Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443210 | A0A072U446 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 2.33e-39 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa1443210 | 0.806841 | 6.762530e-50 | -8.615850e-47 |
| Msa0104570 | Msa1443210 | 0.812328 | 4.481051e-51 | -8.615850e-47 |
| Msa1371270 | Msa1443210 | 0.803715 | 3.053664e-49 | -8.615850e-47 |
| Msa0616230 | Msa1443210 | 0.826134 | 3.204541e-54 | -8.615850e-47 |
| Msa0655710 | Msa1443210 | 0.804666 | 1.936550e-49 | -8.615850e-47 |
| Msa0699560 | Msa1443210 | 0.816189 | 6.287942e-52 | -8.615850e-47 |
| Msa0706690 | Msa1443210 | 0.812239 | 4.684592e-51 | -8.615850e-47 |
| Msa0741970 | Msa1443210 | 0.833894 | 4.103603e-56 | -8.615850e-47 |
| Msa0786230 | Msa1443210 | 0.838107 | 3.499529e-57 | -8.615850e-47 |
| Msa0823170 | Msa1443210 | 0.843014 | 1.818266e-58 | -8.615850e-47 |
| Msa1343460 | Msa1443210 | 0.810887 | 9.217141e-51 | -8.615850e-47 |
| Msa0577650 | Msa1443210 | 0.994968 | 8.227753e-212 | -8.615850e-47 |
| Msa0577740 | Msa1443210 | 0.995703 | 5.475579e-219 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443210 | MtrunA17_Chr8g0377521 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 4.49e-43 | 134 |
| Msa1443210 | MtrunA17_Chr3g0122331 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 1.69e-33 | 109 |
| Msa1443210 | MtrunA17_Chr8g0386301 | 72.059 | 68 | 19 | 0 | 10 | 77 | 2 | 69 | 6.61e-33 | 108 |
| Msa1443210 | MtrunA17_Chr7g0225171 | 67.647 | 68 | 22 | 0 | 10 | 77 | 2 | 69 | 9.75e-31 | 102 |
| Msa1443210 | MtrunA17_Chr7g0225011 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 1.14e-28 | 97.4 |
| Msa1443210 | MtrunA17_Chr8g0347211 | 64.706 | 68 | 24 | 0 | 10 | 77 | 2 | 69 | 6.46e-28 | 95.5 |
| Msa1443210 | MtrunA17_Chr7g0224981 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa1443210 | MtrunA17_Chr7g0224941 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa1443210 | MtrunA17_Chr8g0377511 | 61.765 | 68 | 26 | 0 | 10 | 77 | 2 | 69 | 1.89e-27 | 94.4 |
| Msa1443210 | MtrunA17_Chr7g0225061 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 5.33e-27 | 93.2 |
| Msa1443210 | MtrunA17_Chr7g0225041 | 60.294 | 68 | 27 | 0 | 8 | 75 | 1 | 68 | 5.69e-27 | 93.2 |
| Msa1443210 | MtrunA17_Chr7g0225141 | 57.353 | 68 | 29 | 0 | 10 | 77 | 2 | 69 | 1.21e-24 | 87.4 |
| Msa1443210 | MtrunA17_Chr3g0122341 | 55.224 | 67 | 30 | 0 | 11 | 77 | 3 | 69 | 1.98e-23 | 84.3 |
| Msa1443210 | MtrunA17_Chr7g0225151 | 41.538 | 65 | 38 | 0 | 11 | 75 | 3 | 67 | 1.45e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443210 | AT3G48660.1 | 77.941 | 68 | 15 | 0 | 10 | 77 | 2 | 69 | 5.63e-34 | 112 |
| Msa1443210 | AT5G63500.1 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 8.64e-33 | 108 |
| Msa1443210 | AT3G27027.1 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 1.99e-26 | 92.0 |
| Msa1443210 | AT5G08391.1 | 55.882 | 68 | 30 | 0 | 10 | 77 | 2 | 69 | 1.48e-25 | 90.1 |
| Msa1443210 | AT3G27030.1 | 58.667 | 75 | 31 | 0 | 3 | 77 | 68 | 142 | 4.78e-25 | 90.9 |
| Msa1443210 | AT3G27030.1 | 63.636 | 66 | 24 | 0 | 11 | 76 | 3 | 68 | 2.08e-24 | 89.4 |
| Msa1443210 | AT5G40980.1 | 68.421 | 57 | 18 | 0 | 8 | 64 | 1 | 57 | 6.36e-24 | 85.9 |
| Msa1443210 | AT3G01950.1 | 54.286 | 70 | 32 | 0 | 8 | 77 | 1 | 70 | 6.75e-24 | 85.9 |
| Msa1443210 | AT5G14110.1 | 52.941 | 68 | 32 | 0 | 8 | 75 | 1 | 68 | 1.68e-22 | 82.4 |
| Msa1443210 | AT3G01940.1 | 65.152 | 66 | 23 | 0 | 10 | 75 | 4 | 69 | 2.62e-20 | 76.6 |
| Msa1443210 | AT5G50660.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa1443210 | AT5G50560.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa1443210 | AT5G40960.1 | 40.909 | 66 | 39 | 0 | 11 | 76 | 3 | 68 | 5.30e-11 | 53.1 |
Find 32 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGGAGGGTGGTAGCTTT+TGG | 0.170404 | tig0030384:+31898 | Msa1443210:CDS |
| GTTAGAAAAGAATAGCAATT+TGG | 0.188910 | tig0030384:+31783 | Msa1443210:intron |
| AACAAGTGGTCTCTCTATTT+TGG | 0.192974 | tig0030384:+31930 | Msa1443210:CDS |
| CAAAGTGATGGCTGCTGATT+GGG | 0.288404 | tig0030384:+31807 | Msa1443210:CDS |
| TTAGAAAAGAATAGCAATTT+GGG | 0.330584 | tig0030384:+31784 | Msa1443210:intron |
| TTGATTATCCAGAGTAGATA+TGG | 0.359173 | tig0030384:-32008 | None:intergenic |
| GTCCATACCATCATCTTCTT+CGG | 0.384903 | tig0030384:+31952 | Msa1443210:CDS |
| ACTGTTCCAGCTCCCGGCTA+AGG | 0.387885 | tig0030384:+31879 | Msa1443210:CDS |
| TGCTGATTGGGCTCCGGTGG+TGG | 0.391799 | tig0030384:+31819 | Msa1443210:CDS |
| GCAAAGTGATGGCTGCTGAT+TGG | 0.392576 | tig0030384:+31806 | Msa1443210:CDS |
| CCCTCCCCTTAGCCGGGAGC+TGG | 0.420899 | tig0030384:-31885 | None:intergenic |
| CTGTTCCAGCTCCCGGCTAA+GGG | 0.432627 | tig0030384:+31880 | Msa1443210:CDS |
| CTGTTTGTGCTACTAAGTCC+AGG | 0.452174 | tig0030384:+31853 | Msa1443210:CDS |
| CCAGCTCCCGGCTAAGGGGA+GGG | 0.482266 | tig0030384:+31885 | Msa1443210:CDS |
| GCTACCACCCTCCCCTTAGC+CGG | 0.484903 | tig0030384:-31892 | None:intergenic |
| CTACCACCCTCCCCTTAGCC+GGG | 0.486618 | tig0030384:-31891 | None:intergenic |
| AGGGCTACTGTTCCAGCTCC+CGG | 0.497556 | tig0030384:+31873 | Msa1443210:CDS |
| GGCTGCTGATTGGGCTCCGG+TGG | 0.498987 | tig0030384:+31816 | Msa1443210:CDS |
| TCCAGCTCCCGGCTAAGGGG+AGG | 0.518990 | tig0030384:+31884 | Msa1443210:CDS |
| GTCCGAAGAAGATGATGGTA+TGG | 0.522758 | tig0030384:-31954 | None:intergenic |
| GATGGCTGCTGATTGGGCTC+CGG | 0.524505 | tig0030384:+31813 | Msa1443210:CDS |
| ATTGGTGTCCATATCTACTC+TGG | 0.527323 | tig0030384:+32000 | Msa1443210:CDS |
| GGGAGCTGGAACAGTAGCCC+TGG | 0.543144 | tig0030384:-31871 | None:intergenic |
| GGCTCCGGTGGTGGTATCTG+TGG | 0.570677 | tig0030384:+31828 | Msa1443210:CDS |
| GCTCCCGGCTAAGGGGAGGG+TGG | 0.576467 | tig0030384:+31888 | Msa1443210:CDS |
| TAGCAATTTGGGCAAAGTGA+TGG | 0.580819 | tig0030384:+31795 | Msa1443210:intron |
| TGTTCCAGCTCCCGGCTAAG+GGG | 0.589394 | tig0030384:+31881 | Msa1443210:CDS |
| AACGAGTCCGAAGAAGATGA+TGG | 0.602203 | tig0030384:-31959 | None:intergenic |
| AGCACCACAGATACCACCAC+CGG | 0.611357 | tig0030384:-31832 | None:intergenic |
| TTTGGGAGCATGCAAACAAG+TGG | 0.621437 | tig0030384:+31916 | Msa1443210:CDS |
| TGTTTGTGCTACTAAGTCCA+GGG | 0.634532 | tig0030384:+31854 | Msa1443210:CDS |
| AGAGTAGATATGGACACCAA+TGG | 0.644712 | tig0030384:-31998 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATATAACTGAAT+GGG | - | tig0030384:30259-30278 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | - | tig0030384:30260-30279 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | + | tig0030384:30277-30296 | Msa1443210:intron | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | - | tig0030384:30450-30469 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | - | tig0030384:30487-30506 | None:intergenic | 10.0% |
| !! | CAAAACATAAAAAAAAAAAT+TGG | + | tig0030384:30770-30789 | Msa1443210:intron | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | + | tig0030384:31087-31106 | Msa1443210:intron | 10.0% |
| !! | AAATATTAATATAACTGAAT+GGG | - | tig0030384:30259-30278 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | - | tig0030384:30260-30279 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | + | tig0030384:30277-30296 | Msa1443210:intron | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | - | tig0030384:30450-30469 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | - | tig0030384:30487-30506 | None:intergenic | 10.0% |
| !! | CAAAACATAAAAAAAAAAAT+TGG | + | tig0030384:30770-30789 | Msa1443210:intron | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | + | tig0030384:31087-31106 | Msa1443210:intron | 10.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | - | tig0030384:30404-30423 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | + | tig0030384:30403-30422 | Msa1443210:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | - | tig0030384:30484-30503 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | + | tig0030384:30734-30753 | Msa1443210:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | + | tig0030384:30811-30830 | Msa1443210:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | - | tig0030384:31062-31081 | None:intergenic | 15.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | - | tig0030384:30404-30423 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | + | tig0030384:30403-30422 | Msa1443210:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | - | tig0030384:30484-30503 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | + | tig0030384:30734-30753 | Msa1443210:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | + | tig0030384:30811-30830 | Msa1443210:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | - | tig0030384:31062-31081 | None:intergenic | 15.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | + | tig0030384:30216-30235 | Msa1443210:intron | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | + | tig0030384:30217-30236 | Msa1443210:intron | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | - | tig0030384:30725-30744 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | - | tig0030384:30970-30989 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | + | tig0030384:31127-31146 | Msa1443210:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | + | tig0030384:31236-31255 | Msa1443210:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | + | tig0030384:31237-31256 | Msa1443210:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | - | tig0030384:31405-31424 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | - | tig0030384:31406-31425 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | + | tig0030384:31784-31803 | Msa1443210:intron | 20.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | + | tig0030384:30216-30235 | Msa1443210:intron | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | + | tig0030384:30217-30236 | Msa1443210:intron | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | - | tig0030384:30725-30744 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | - | tig0030384:30970-30989 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | + | tig0030384:31127-31146 | Msa1443210:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | + | tig0030384:31236-31255 | Msa1443210:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | + | tig0030384:31237-31256 | Msa1443210:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | - | tig0030384:31405-31424 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | - | tig0030384:31406-31425 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | + | tig0030384:31784-31803 | Msa1443210:intron | 20.0% |
| ! | AAAAATTCTAATACGATCAC+CGG | - | tig0030384:30545-30564 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | + | tig0030384:30696-30715 | Msa1443210:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | + | tig0030384:30821-30840 | Msa1443210:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | + | tig0030384:31223-31242 | Msa1443210:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | + | tig0030384:31534-31553 | Msa1443210:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | + | tig0030384:31539-31558 | Msa1443210:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | + | tig0030384:31615-31634 | Msa1443210:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | + | tig0030384:31616-31635 | Msa1443210:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | + | tig0030384:31783-31802 | Msa1443210:intron | 25.0% |
| ! | AAAAATTCTAATACGATCAC+CGG | - | tig0030384:30545-30564 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | + | tig0030384:30696-30715 | Msa1443210:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | + | tig0030384:30821-30840 | Msa1443210:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | + | tig0030384:31223-31242 | Msa1443210:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | + | tig0030384:31534-31553 | Msa1443210:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | + | tig0030384:31539-31558 | Msa1443210:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | + | tig0030384:31615-31634 | Msa1443210:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | + | tig0030384:31616-31635 | Msa1443210:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | + | tig0030384:31783-31802 | Msa1443210:intron | 25.0% |
| !! | AACATGATTTTGAAAAAGGG+AGG | + | tig0030384:30220-30239 | Msa1443210:intron | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | - | tig0030384:30377-30396 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | - | tig0030384:30378-30397 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | + | tig0030384:30629-30648 | Msa1443210:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | + | tig0030384:30786-30805 | Msa1443210:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | + | tig0030384:30787-30806 | Msa1443210:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | + | tig0030384:30843-30862 | Msa1443210:intron | 30.0% | |
| TCAACTAGGTCATCTAATAA+GGG | - | tig0030384:30933-30952 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | - | tig0030384:31212-31231 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | - | tig0030384:31598-31617 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | - | tig0030384:31705-31724 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | - | tig0030384:31715-31734 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | + | tig0030384:31712-31731 | Msa1443210:intron | 30.0% | |
| !! | AACATGATTTTGAAAAAGGG+AGG | + | tig0030384:30220-30239 | Msa1443210:intron | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | - | tig0030384:30377-30396 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | - | tig0030384:30378-30397 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | + | tig0030384:30629-30648 | Msa1443210:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | + | tig0030384:30786-30805 | Msa1443210:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | + | tig0030384:30787-30806 | Msa1443210:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | + | tig0030384:30843-30862 | Msa1443210:intron | 30.0% | |
| TCAACTAGGTCATCTAATAA+GGG | - | tig0030384:30933-30952 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | - | tig0030384:31212-31231 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | - | tig0030384:31598-31617 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | - | tig0030384:31705-31724 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | - | tig0030384:31715-31734 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | + | tig0030384:31712-31731 | Msa1443210:intron | 30.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | + | tig0030384:30518-30537 | Msa1443210:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | + | tig0030384:30523-30542 | Msa1443210:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | - | tig0030384:30645-30664 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | + | tig0030384:30788-30807 | Msa1443210:intron | 35.0% |
| !!! | GGAGTGCTACTTTTTTACTT+GGG | - | tig0030384:30904-30923 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | - | tig0030384:30934-30953 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | + | tig0030384:31102-31121 | Msa1443210:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | - | tig0030384:31196-31215 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | - | tig0030384:31200-31219 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | + | tig0030384:31570-31589 | Msa1443210:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | + | tig0030384:31930-31949 | Msa1443210:CDS | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | + | tig0030384:31982-32001 | Msa1443210:CDS | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | - | tig0030384:31986-32005 | None:intergenic | 35.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | + | tig0030384:30518-30537 | Msa1443210:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | + | tig0030384:30523-30542 | Msa1443210:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | - | tig0030384:30645-30664 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | + | tig0030384:30788-30807 | Msa1443210:intron | 35.0% |
| !!! | GGAGTGCTACTTTTTTACTT+GGG | - | tig0030384:30904-30923 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | - | tig0030384:30934-30953 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | + | tig0030384:31102-31121 | Msa1443210:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | - | tig0030384:31196-31215 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | - | tig0030384:31200-31219 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | + | tig0030384:31570-31589 | Msa1443210:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | + | tig0030384:31930-31949 | Msa1443210:CDS | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | + | tig0030384:31982-32001 | Msa1443210:CDS | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | - | tig0030384:31986-32005 | None:intergenic | 35.0% | |
| CTTGAACTATGACTTACACG+TGG | - | tig0030384:30326-30345 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | - | tig0030384:30372-30391 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | - | tig0030384:30525-30544 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | + | tig0030384:30594-30613 | Msa1443210:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | + | tig0030384:30648-30667 | Msa1443210:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | - | tig0030384:30705-30724 | None:intergenic | 40.0% | |
| ! | TGTCTAAAAGTGTGGGGAAA+AGG | + | tig0030384:30794-30813 | Msa1443210:intron | 40.0% |
| !!! | GGGAGTGCTACTTTTTTACT+TGG | - | tig0030384:30905-30924 | None:intergenic | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | - | tig0030384:30929-30948 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATATGAGA+CGG | + | tig0030384:31145-31164 | Msa1443210:intron | 40.0% | |
| TCCTTCCGTCTCATATTAGA+TGG | - | tig0030384:31153-31172 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | - | tig0030384:31396-31415 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | - | tig0030384:31670-31689 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | - | tig0030384:31683-31702 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | + | tig0030384:31795-31814 | Msa1443210:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | + | tig0030384:31854-31873 | Msa1443210:CDS | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | + | tig0030384:31952-31971 | Msa1443210:CDS | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | - | tig0030384:32001-32020 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | + | tig0030384:32000-32019 | Msa1443210:CDS | 40.0% |
| CTTGAACTATGACTTACACG+TGG | - | tig0030384:30326-30345 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | - | tig0030384:30372-30391 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | - | tig0030384:30525-30544 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | + | tig0030384:30594-30613 | Msa1443210:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | + | tig0030384:30648-30667 | Msa1443210:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | - | tig0030384:30705-30724 | None:intergenic | 40.0% | |
| ! | TGTCTAAAAGTGTGGGGAAA+AGG | + | tig0030384:30794-30813 | Msa1443210:intron | 40.0% |
| !!! | GGGAGTGCTACTTTTTTACT+TGG | - | tig0030384:30905-30924 | None:intergenic | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | - | tig0030384:30929-30948 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATATGAGA+CGG | + | tig0030384:31145-31164 | Msa1443210:intron | 40.0% | |
| TCCTTCCGTCTCATATTAGA+TGG | - | tig0030384:31153-31172 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | - | tig0030384:31396-31415 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | - | tig0030384:31670-31689 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | - | tig0030384:31683-31702 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | + | tig0030384:31795-31814 | Msa1443210:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | + | tig0030384:31854-31873 | Msa1443210:CDS | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | + | tig0030384:31952-31971 | Msa1443210:CDS | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | - | tig0030384:32001-32020 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | + | tig0030384:32000-32019 | Msa1443210:CDS | 40.0% |
| GAAAGGATTCTCCTTTCCCA+TGG | + | tig0030384:30358-30377 | Msa1443210:intron | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | - | tig0030384:30665-30684 | None:intergenic | 45.0% | |
| GTCATCTAATAAGGGACGGA+GGG | - | tig0030384:30925-30944 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | - | tig0030384:30947-30966 | None:intergenic | 45.0% | |
| GCCATCTAATATGAGACGGA+AGG | + | tig0030384:31149-31168 | Msa1443210:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | - | tig0030384:31663-31682 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | + | tig0030384:31731-31750 | Msa1443210:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | + | tig0030384:31807-31826 | Msa1443210:CDS | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | + | tig0030384:31853-31872 | Msa1443210:CDS | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | + | tig0030384:31916-31935 | Msa1443210:CDS | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | - | tig0030384:31957-31976 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | - | tig0030384:31962-31981 | None:intergenic | 45.0% | |
| GAAAGGATTCTCCTTTCCCA+TGG | + | tig0030384:30358-30377 | Msa1443210:intron | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | - | tig0030384:30665-30684 | None:intergenic | 45.0% | |
| GTCATCTAATAAGGGACGGA+GGG | - | tig0030384:30925-30944 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | - | tig0030384:30947-30966 | None:intergenic | 45.0% | |
| GCCATCTAATATGAGACGGA+AGG | + | tig0030384:31149-31168 | Msa1443210:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | - | tig0030384:31663-31682 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | + | tig0030384:31731-31750 | Msa1443210:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | + | tig0030384:31807-31826 | Msa1443210:CDS | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | + | tig0030384:31853-31872 | Msa1443210:CDS | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | + | tig0030384:31916-31935 | Msa1443210:CDS | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | - | tig0030384:31957-31976 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | - | tig0030384:31962-31981 | None:intergenic | 45.0% | |
| AGTCATAGTTCAAGTGCCCC+TGG | + | tig0030384:30332-30351 | Msa1443210:intron | 50.0% | |
| ATAGTTCAAGTGCCCCTGGT+GGG | + | tig0030384:30336-30355 | Msa1443210:intron | 50.0% | |
| AGGAGAATCCTTTCCCACCA+GGG | - | tig0030384:30352-30371 | None:intergenic | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | - | tig0030384:30353-30372 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | - | tig0030384:30926-30945 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | - | tig0030384:31655-31674 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | + | tig0030384:31806-31825 | Msa1443210:CDS | 50.0% | |
| AGTCATAGTTCAAGTGCCCC+TGG | + | tig0030384:30332-30351 | Msa1443210:intron | 50.0% | |
| ATAGTTCAAGTGCCCCTGGT+GGG | + | tig0030384:30336-30355 | Msa1443210:intron | 50.0% | |
| AGGAGAATCCTTTCCCACCA+GGG | - | tig0030384:30352-30371 | None:intergenic | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | - | tig0030384:30353-30372 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | - | tig0030384:30926-30945 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | - | tig0030384:31655-31674 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | + | tig0030384:31806-31825 | Msa1443210:CDS | 50.0% | |
| CTTACACGTGGCAGTAGAGC+AGG | - | tig0030384:30314-30333 | None:intergenic | 55.0% | |
| CATAGTTCAAGTGCCCCTGG+TGG | + | tig0030384:30335-30354 | Msa1443210:intron | 55.0% | |
| GGAGAATCCTTTCCCACCAG+GGG | - | tig0030384:30351-30370 | None:intergenic | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | - | tig0030384:31835-31854 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | + | tig0030384:31898-31917 | Msa1443210:CDS | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | + | tig0030384:31899-31918 | Msa1443210:CDS | 55.0% |
| CTTACACGTGGCAGTAGAGC+AGG | - | tig0030384:30314-30333 | None:intergenic | 55.0% | |
| CATAGTTCAAGTGCCCCTGG+TGG | + | tig0030384:30335-30354 | Msa1443210:intron | 55.0% | |
| GGAGAATCCTTTCCCACCAG+GGG | - | tig0030384:30351-30370 | None:intergenic | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | - | tig0030384:31835-31854 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | + | tig0030384:31898-31917 | Msa1443210:CDS | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | + | tig0030384:31899-31918 | Msa1443210:CDS | 55.0% |
| TCAAGTGCCCCTGGTGGGAA+AGG | + | tig0030384:30341-30360 | Msa1443210:intron | 60.0% | |
| ! | GATGGCTGCTGATTGGGCTC+CGG | + | tig0030384:31813-31832 | Msa1443210:CDS | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | + | tig0030384:31873-31892 | Msa1443210:CDS | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | + | tig0030384:31879-31898 | Msa1443210:CDS | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | + | tig0030384:31880-31899 | Msa1443210:CDS | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | + | tig0030384:31881-31900 | Msa1443210:CDS | 60.0% | |
| TCAAGTGCCCCTGGTGGGAA+AGG | + | tig0030384:30341-30360 | Msa1443210:intron | 60.0% | |
| ! | GATGGCTGCTGATTGGGCTC+CGG | + | tig0030384:31813-31832 | Msa1443210:CDS | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | + | tig0030384:31873-31892 | Msa1443210:CDS | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | + | tig0030384:31879-31898 | Msa1443210:CDS | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | + | tig0030384:31880-31899 | Msa1443210:CDS | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | + | tig0030384:31881-31900 | Msa1443210:CDS | 60.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | + | tig0030384:31819-31838 | Msa1443210:CDS | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | + | tig0030384:31828-31847 | Msa1443210:CDS | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | - | tig0030384:31874-31893 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | - | tig0030384:31894-31913 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | - | tig0030384:31895-31914 | None:intergenic | 65.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | + | tig0030384:31819-31838 | Msa1443210:CDS | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | + | tig0030384:31828-31847 | Msa1443210:CDS | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | - | tig0030384:31874-31893 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | - | tig0030384:31894-31913 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | - | tig0030384:31895-31914 | None:intergenic | 65.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | + | tig0030384:31816-31835 | Msa1443210:CDS | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | + | tig0030384:31884-31903 | Msa1443210:CDS | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | + | tig0030384:31885-31904 | Msa1443210:CDS | 70.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | + | tig0030384:31816-31835 | Msa1443210:CDS | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | + | tig0030384:31884-31903 | Msa1443210:CDS | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | + | tig0030384:31885-31904 | Msa1443210:CDS | 70.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | - | tig0030384:31888-31907 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | + | tig0030384:31888-31907 | Msa1443210:CDS | 75.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | - | tig0030384:31888-31907 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | + | tig0030384:31888-31907 | Msa1443210:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030384 | gene | 30194 | 32026 | 30194 | ID=Msa1443210;Name=Msa1443210 |
| tig0030384 | mRNA | 30194 | 32026 | 30194 | ID=Msa1443210-mRNA-1;Parent=Msa1443210;Name=Msa1443210-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.5|1|1|2|0|77 |
| tig0030384 | exon | 30194 | 30198 | 30194 | ID=Msa1443210-mRNA-1:exon:13777;Parent=Msa1443210-mRNA-1 |
| tig0030384 | exon | 31798 | 32026 | 31798 | ID=Msa1443210-mRNA-1:exon:13778;Parent=Msa1443210-mRNA-1 |
| tig0030384 | CDS | 30194 | 30198 | 30194 | ID=Msa1443210-mRNA-1:cds;Parent=Msa1443210-mRNA-1 |
| tig0030384 | CDS | 31798 | 32026 | 31798 | ID=Msa1443210-mRNA-1:cds;Parent=Msa1443210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
