Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741970 | XP_003617458.1 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.99e-112 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741970 | sp|Q682H0|HA22F_ARATH | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.43e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741970 | B7FNC9 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 2.86e-112 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa0741970 | 0.822180 | 2.718826e-53 | -8.615850e-47 |
| Msa0069350 | Msa0741970 | 0.804215 | 2.404417e-49 | -8.615850e-47 |
| Msa0104570 | Msa0741970 | 0.828100 | 1.084490e-54 | -8.615850e-47 |
| Msa0665160 | Msa0741970 | 0.803544 | 3.313757e-49 | -8.615850e-47 |
| Msa0741970 | Msa0781890 | 0.819396 | 1.187085e-52 | -8.615850e-47 |
| Msa0741970 | Msa0786230 | 0.927802 | 7.062883e-92 | -8.615850e-47 |
| Msa0741970 | Msa0823170 | 0.953180 | 4.829482e-111 | -8.615850e-47 |
| Msa0741970 | Msa0862170 | 0.935969 | 3.664934e-97 | -8.615850e-47 |
| Msa0741970 | Msa1060340 | 0.849075 | 4.079955e-60 | -8.615850e-47 |
| Msa0741970 | Msa1360930 | 0.826624 | 2.449167e-54 | -8.615850e-47 |
| Msa0741970 | Msa1404480 | 0.819021 | 1.445566e-52 | -8.615850e-47 |
| Msa0741970 | Msa1443210 | 0.833894 | 4.103603e-56 | -8.615850e-47 |
| Msa0150590 | Msa0741970 | 0.808822 | 2.564331e-50 | -8.615850e-47 |
| Msa0182400 | Msa0741970 | 0.817773 | 2.770847e-52 | -8.615850e-47 |
| Msa0427820 | Msa0741970 | 0.857620 | 1.441722e-62 | -8.615850e-47 |
| Msa0474060 | Msa0741970 | 0.857603 | 1.458541e-62 | -8.615850e-47 |
| Msa0325720 | Msa0741970 | 0.800322 | 1.521653e-48 | -8.615850e-47 |
| Msa0518680 | Msa0741970 | 0.845823 | 3.192568e-59 | -8.615850e-47 |
| Msa0530390 | Msa0741970 | 0.810860 | 9.344343e-51 | -8.615850e-47 |
| Msa0577650 | Msa0741970 | 0.830250 | 3.263984e-55 | -8.615850e-47 |
| Msa0577740 | Msa0741970 | 0.831452 | 1.656170e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741970 | MtrunA17_Chr5g0443431 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.51e-116 | 324 |
| Msa0741970 | MtrunA17_Chr3g0097141 | 79.114 | 158 | 32 | 1 | 1 | 157 | 1 | 158 | 2.23e-94 | 270 |
| Msa0741970 | MtrunA17_Chr4g0060581 | 51.333 | 150 | 71 | 1 | 4 | 153 | 12 | 159 | 1.25e-46 | 149 |
| Msa0741970 | MtrunA17_Chr5g0416561 | 44.578 | 166 | 74 | 2 | 2 | 155 | 64 | 223 | 1.39e-40 | 136 |
| Msa0741970 | MtrunA17_Chr3g0132031 | 48.760 | 121 | 56 | 1 | 1 | 121 | 1 | 115 | 7.23e-34 | 116 |
| Msa0741970 | MtrunA17_Chr8g0386221 | 50.962 | 104 | 51 | 0 | 1 | 104 | 1 | 104 | 5.91e-33 | 112 |
| Msa0741970 | MtrunA17_Chr4g0049651 | 33.088 | 136 | 77 | 2 | 17 | 147 | 20 | 146 | 2.34e-20 | 86.7 |
| Msa0741970 | MtrunA17_Chr4g0049701 | 31.159 | 138 | 81 | 2 | 17 | 149 | 17 | 145 | 9.12e-20 | 84.0 |
| Msa0741970 | MtrunA17_Chr4g0049671 | 32.540 | 126 | 71 | 2 | 27 | 147 | 21 | 137 | 4.73e-17 | 77.0 |
| Msa0741970 | MtrunA17_Chr5g0403731 | 29.688 | 128 | 78 | 2 | 7 | 134 | 28 | 143 | 2.78e-14 | 67.0 |
| Msa0741970 | MtrunA17_Chr5g0427761 | 34.524 | 84 | 55 | 0 | 17 | 100 | 22 | 105 | 5.81e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741970 | AT2G42820.1 | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.47e-74 | 219 |
| Msa0741970 | AT1G74520.1 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0741970 | AT1G74520.2 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0741970 | AT1G69700.1 | 44.966 | 149 | 79 | 1 | 2 | 147 | 9 | 157 | 4.88e-37 | 125 |
| Msa0741970 | AT5G50720.1 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 2.23e-35 | 119 |
| Msa0741970 | AT5G62490.1 | 56.842 | 95 | 41 | 0 | 7 | 101 | 12 | 106 | 1.40e-34 | 119 |
| Msa0741970 | AT4G24960.1 | 45.669 | 127 | 68 | 1 | 8 | 134 | 8 | 133 | 4.15e-32 | 112 |
| Msa0741970 | AT4G24960.3 | 40.441 | 136 | 71 | 1 | 20 | 155 | 1 | 126 | 1.31e-29 | 105 |
| Msa0741970 | AT4G24960.2 | 41.748 | 103 | 59 | 1 | 32 | 134 | 1 | 102 | 7.63e-23 | 87.4 |
| Msa0741970 | AT4G36720.1 | 36.842 | 95 | 56 | 1 | 7 | 101 | 36 | 126 | 5.81e-16 | 72.0 |
Find 44 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAGATTAATGAAGTTT+TGG | 0.269958 | 5_1:-61766197 | None:intergenic |
| AGGACATACGTCAAGAAATT+TGG | 0.280571 | 5_1:+61767070 | Msa0741970:CDS |
| GTCAAGAAATTTGGTAACTA+TGG | 0.297751 | 5_1:+61767079 | Msa0741970:CDS |
| ACCAACAGTGGCTAACATAT+TGG | 0.311228 | 5_1:+61766800 | Msa0741970:CDS |
| GAACGTTATATTGATAGATT+TGG | 0.323087 | 5_1:+61767172 | Msa0741970:CDS |
| ATCACTCTCTCAAATGCATC+TGG | 0.334518 | 5_1:-61767196 | None:intergenic |
| CCAACAGTGGCTAACATATT+GGG | 0.341811 | 5_1:+61766801 | Msa0741970:CDS |
| CAACTTACAAGGTCCTATAT+TGG | 0.344124 | 5_1:+61766857 | Msa0741970:CDS |
| ATATCAATAGGTTTCCCATT+TGG | 0.373951 | 5_1:+61766966 | Msa0741970:intron |
| AGACATTTGGACACAACAAT+AGG | 0.378599 | 5_1:+61766259 | Msa0741970:CDS |
| ATTGCTGAACCTACCAATAT+AGG | 0.380907 | 5_1:-61766870 | None:intergenic |
| AAGCTTCATGTATGGCCAAA+TGG | 0.383376 | 5_1:-61766981 | None:intergenic |
| TGGAGCAATACTAAGACATT+TGG | 0.388072 | 5_1:+61766246 | Msa0741970:CDS |
| AGAGTTGGAGCAAAAGATTA+TGG | 0.394037 | 5_1:-61766172 | None:intergenic |
| CTTCGAGCTTTCAACTTACA+AGG | 0.426910 | 5_1:+61766846 | Msa0741970:CDS |
| AAAATCATCATGGGTGTCCT+TGG | 0.439409 | 5_1:+61766226 | Msa0741970:exon |
| AGCTTCATGTATGGCCAAAT+GGG | 0.440653 | 5_1:-61766980 | None:intergenic |
| GACATTTGGACACAACAATA+GGG | 0.477953 | 5_1:+61766260 | Msa0741970:CDS |
| TATTGAAAGTCCTTCAACCT+TGG | 0.507265 | 5_1:+61766774 | Msa0741970:CDS |
| TTATTCTTCCTATGCCAGCT+TGG | 0.512168 | 5_1:-61767376 | None:intergenic |
| TGGAATCAAATGTTGTATTG+TGG | 0.519588 | 5_1:-61766152 | None:intergenic |
| TGAAGCTTGTGTTCTGCGTA+TGG | 0.521277 | 5_1:+61766996 | Msa0741970:CDS |
| TGTTGGTCATCCAAGGTTGA+AGG | 0.521506 | 5_1:-61766784 | None:intergenic |
| AGAACCTTCTTGTACTCCTC+AGG | 0.524082 | 5_1:-61767115 | None:intergenic |
| CCCAATATGTTAGCCACTGT+TGG | 0.527231 | 5_1:-61766801 | None:intergenic |
| TTTATTCTTAATTAATCCAA+GGG | 0.530381 | 5_1:-61767542 | None:intergenic |
| CAATTTAACCAAGCTGGCAT+AGG | 0.541105 | 5_1:+61767368 | Msa0741970:three_prime_UTR |
| CAGAACACAAGCTTCATGTA+TGG | 0.542978 | 5_1:-61766989 | None:intergenic |
| TAGCCACTGTTGGTCATCCA+AGG | 0.555283 | 5_1:-61766791 | None:intergenic |
| AGGATAAAGAAGCATTACTC+CGG | 0.560010 | 5_1:-61766646 | None:intergenic |
| TTGGTACTGCCAATGTTCAA+TGG | 0.561469 | 5_1:+61767019 | Msa0741970:CDS |
| GCTTGTGTTCTGCGTATGGT+TGG | 0.576715 | 5_1:+61767000 | Msa0741970:CDS |
| GGATAAAGAAGCATTACTCC+GGG | 0.584585 | 5_1:-61766645 | None:intergenic |
| GAGCGTCAATTTAACCAAGC+TGG | 0.586351 | 5_1:+61767362 | Msa0741970:three_prime_UTR |
| TCATAGATACGCATCAATGA+GGG | 0.589923 | 5_1:+61766750 | Msa0741970:intron |
| TCACTCTCTCAAATGCATCT+GGG | 0.598256 | 5_1:-61767195 | None:intergenic |
| ATCATAGATACGCATCAATG+AGG | 0.601236 | 5_1:+61766749 | Msa0741970:intron |
| ACTTCATTAATCTCTCCACC+TGG | 0.615826 | 5_1:+61766202 | Msa0741970:five_prime_UTR |
| TAAGCTGCTCCATTGAACAT+TGG | 0.632735 | 5_1:-61767028 | None:intergenic |
| TTATCCTGAGGAGTACAAGA+AGG | 0.638050 | 5_1:+61767111 | Msa0741970:CDS |
| AATGTCTTAGTATTGCTCCA+AGG | 0.660944 | 5_1:-61766243 | None:intergenic |
| ACATATATGAGAATTATGCA+AGG | 0.691799 | 5_1:+61767050 | Msa0741970:CDS |
| CAACCTTGGATGACCAACAG+TGG | 0.691907 | 5_1:+61766788 | Msa0741970:CDS |
| TGGAAATTACAATTATCCTG+AGG | 0.710511 | 5_1:+61767099 | Msa0741970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTATAATTATCTTTTTAT+TGG | + | chr5_1:61766388-61766407 | Msa0741970:intron | 10.0% |
| !! | TAAAGATATATTTATAACTT+TGG | - | chr5_1:61767252-61767271 | None:intergenic | 10.0% |
| !!! | TTCTATAATTATCTTTTTAT+TGG | + | chr5_1:61766388-61766407 | Msa0741970:intron | 10.0% |
| !! | TAAAGATATATTTATAACTT+TGG | - | chr5_1:61767252-61767271 | None:intergenic | 10.0% |
| !! | AAAAGATAATTATAGAAAAG+TGG | - | chr5_1:61766385-61766404 | None:intergenic | 15.0% |
| !!! | TATAATTATCTTTTTATTGG+TGG | + | chr5_1:61766391-61766410 | Msa0741970:intron | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_1:61766932-61766951 | Msa0741970:intron | 15.0% |
| !! | GCTTAATAAAAAATATCAAT+AGG | + | chr5_1:61766954-61766973 | Msa0741970:intron | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_1:61767545-61767564 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_1:61767546-61767565 | None:intergenic | 15.0% |
| !! | AAAAGATAATTATAGAAAAG+TGG | - | chr5_1:61766385-61766404 | None:intergenic | 15.0% |
| !!! | TATAATTATCTTTTTATTGG+TGG | + | chr5_1:61766391-61766410 | Msa0741970:intron | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_1:61766932-61766951 | Msa0741970:intron | 15.0% |
| !! | GCTTAATAAAAAATATCAAT+AGG | + | chr5_1:61766954-61766973 | Msa0741970:intron | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_1:61767545-61767564 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_1:61767546-61767565 | None:intergenic | 15.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_1:61766490-61766509 | Msa0741970:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_1:61766669-61766688 | None:intergenic | 20.0% |
| !! | TCTATTTCACTTTATATTTC+AGG | + | chr5_1:61767311-61767330 | Msa0741970:intron | 20.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_1:61766490-61766509 | Msa0741970:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_1:61766669-61766688 | None:intergenic | 20.0% |
| !! | TCTATTTCACTTTATATTTC+AGG | + | chr5_1:61767311-61767330 | Msa0741970:intron | 20.0% |
| !! | AATTATCTTTTTATTGGTGG+TGG | + | chr5_1:61766394-61766413 | Msa0741970:intron | 25.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_1:61766551-61766570 | Msa0741970:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTATG+AGG | - | chr5_1:61766613-61766632 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_1:61767050-61767069 | Msa0741970:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_1:61767172-61767191 | Msa0741970:CDS | 25.0% |
| !! | AATTATCTTTTTATTGGTGG+TGG | + | chr5_1:61766394-61766413 | Msa0741970:intron | 25.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_1:61766551-61766570 | Msa0741970:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTATG+AGG | - | chr5_1:61766613-61766632 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_1:61767050-61767069 | Msa0741970:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_1:61767172-61767191 | Msa0741970:CDS | 25.0% |
| TGGAATCAAATGTTGTATTG+TGG | - | chr5_1:61766155-61766174 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_1:61766190-61766209 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_1:61766200-61766219 | None:intergenic | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr5_1:61766439-61766458 | None:intergenic | 30.0% | |
| !! | GTACATGCAATATTTTGAAG+GGG | - | chr5_1:61766531-61766550 | None:intergenic | 30.0% |
| !! | CGTACATGCAATATTTTGAA+GGG | - | chr5_1:61766532-61766551 | None:intergenic | 30.0% |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_1:61766533-61766552 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_1:61766550-61766569 | Msa0741970:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_1:61766966-61766985 | Msa0741970:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_1:61767079-61767098 | Msa0741970:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_1:61767099-61767118 | Msa0741970:CDS | 30.0% | |
| CAAATGTTGTATTGTGGATT+TGG | - | chr5_1:61766149-61766168 | None:intergenic | 30.0% | |
| TGGAATCAAATGTTGTATTG+TGG | - | chr5_1:61766155-61766174 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_1:61766190-61766209 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_1:61766200-61766219 | None:intergenic | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr5_1:61766439-61766458 | None:intergenic | 30.0% | |
| !! | GTACATGCAATATTTTGAAG+GGG | - | chr5_1:61766531-61766550 | None:intergenic | 30.0% |
| !! | CGTACATGCAATATTTTGAA+GGG | - | chr5_1:61766532-61766551 | None:intergenic | 30.0% |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_1:61766533-61766552 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_1:61766550-61766569 | Msa0741970:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_1:61766966-61766985 | Msa0741970:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_1:61767079-61767098 | Msa0741970:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_1:61767099-61767118 | Msa0741970:CDS | 30.0% | |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_1:61766175-61766194 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_1:61766246-61766265 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_1:61766246-61766265 | Msa0741970:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_1:61766259-61766278 | Msa0741970:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_1:61766260-61766279 | Msa0741970:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr5_1:61766434-61766453 | None:intergenic | 35.0% | |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_1:61766569-61766588 | Msa0741970:intron | 35.0% | |
| !!! | ATCCTACTTTTTTGTGTACC+AGG | + | chr5_1:61766622-61766641 | Msa0741970:intron | 35.0% |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_1:61766649-61766668 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_1:61766749-61766768 | Msa0741970:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_1:61766750-61766769 | Msa0741970:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_1:61766774-61766793 | Msa0741970:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_1:61766857-61766876 | Msa0741970:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_1:61766861-61766880 | Msa0741970:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_1:61766873-61766892 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_1:61767070-61767089 | Msa0741970:CDS | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_1:61767526-61767545 | Msa0741970:three_prime_UTR | 35.0% |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_1:61766175-61766194 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_1:61766246-61766265 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_1:61766246-61766265 | Msa0741970:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_1:61766259-61766278 | Msa0741970:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_1:61766260-61766279 | Msa0741970:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr5_1:61766434-61766453 | None:intergenic | 35.0% | |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_1:61766569-61766588 | Msa0741970:intron | 35.0% | |
| !!! | ATCCTACTTTTTTGTGTACC+AGG | + | chr5_1:61766622-61766641 | Msa0741970:intron | 35.0% |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_1:61766649-61766668 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_1:61766749-61766768 | Msa0741970:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_1:61766750-61766769 | Msa0741970:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_1:61766774-61766793 | Msa0741970:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_1:61766857-61766876 | Msa0741970:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_1:61766861-61766880 | Msa0741970:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_1:61766873-61766892 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_1:61767070-61767089 | Msa0741970:CDS | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_1:61767526-61767545 | Msa0741970:three_prime_UTR | 35.0% |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_1:61766202-61766221 | Msa0741970:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_1:61766216-61766235 | Msa0741970:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_1:61766217-61766236 | Msa0741970:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_1:61766223-61766242 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_1:61766226-61766245 | Msa0741970:exon | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr5_1:61766432-61766451 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr5_1:61766433-61766452 | None:intergenic | 40.0% | |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_1:61766648-61766667 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_1:61766800-61766819 | Msa0741970:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_1:61766801-61766820 | Msa0741970:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_1:61766846-61766865 | Msa0741970:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_1:61766983-61767002 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_1:61766984-61767003 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_1:61766992-61767011 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_1:61767019-61767038 | Msa0741970:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_1:61767031-61767050 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_1:61767111-61767130 | Msa0741970:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_1:61767198-61767217 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_1:61767199-61767218 | None:intergenic | 40.0% | |
| CAATTTAACCAAGCTGGCAT+AGG | + | chr5_1:61767368-61767387 | Msa0741970:three_prime_UTR | 40.0% | |
| TTATTCTTCCTATGCCAGCT+TGG | - | chr5_1:61767379-61767398 | None:intergenic | 40.0% | |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_1:61766202-61766221 | Msa0741970:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_1:61766216-61766235 | Msa0741970:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_1:61766217-61766236 | Msa0741970:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_1:61766223-61766242 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_1:61766226-61766245 | Msa0741970:exon | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr5_1:61766432-61766451 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr5_1:61766433-61766452 | None:intergenic | 40.0% | |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_1:61766648-61766667 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_1:61766800-61766819 | Msa0741970:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_1:61766801-61766820 | Msa0741970:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_1:61766846-61766865 | Msa0741970:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_1:61766983-61767002 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_1:61766984-61767003 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_1:61766992-61767011 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_1:61767019-61767038 | Msa0741970:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_1:61767031-61767050 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_1:61767111-61767130 | Msa0741970:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_1:61767198-61767217 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_1:61767199-61767218 | None:intergenic | 40.0% | |
| CAATTTAACCAAGCTGGCAT+AGG | + | chr5_1:61767368-61767387 | Msa0741970:three_prime_UTR | 40.0% | |
| TTATTCTTCCTATGCCAGCT+TGG | - | chr5_1:61767379-61767398 | None:intergenic | 40.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_1:61766220-61766239 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5_1:61766461-61766480 | None:intergenic | 45.0% |
| GGCCTGGTACACAAAAAAGT+AGG | - | chr5_1:61766627-61766646 | None:intergenic | 45.0% | |
| !!! | ACTTTTTTGTGTACCAGGCC+CGG | + | chr5_1:61766627-61766646 | Msa0741970:intron | 45.0% |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_1:61766787-61766806 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_1:61766804-61766823 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_1:61766996-61767015 | Msa0741970:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_1:61767118-61767137 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_1:61767362-61767381 | Msa0741970:three_prime_UTR | 45.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_1:61766220-61766239 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5_1:61766461-61766480 | None:intergenic | 45.0% |
| GGCCTGGTACACAAAAAAGT+AGG | - | chr5_1:61766627-61766646 | None:intergenic | 45.0% | |
| !!! | ACTTTTTTGTGTACCAGGCC+CGG | + | chr5_1:61766627-61766646 | Msa0741970:intron | 45.0% |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_1:61766787-61766806 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_1:61766804-61766823 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_1:61766996-61767015 | Msa0741970:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_1:61767118-61767137 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_1:61767362-61767381 | Msa0741970:three_prime_UTR | 45.0% | |
| CTACGTGAGCTTAGCTCAGT+TGG | - | chr5_1:61766466-61766485 | None:intergenic | 50.0% | |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_1:61766788-61766807 | Msa0741970:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_1:61766794-61766813 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_1:61767000-61767019 | Msa0741970:CDS | 50.0% | |
| CTACGTGAGCTTAGCTCAGT+TGG | - | chr5_1:61766466-61766485 | None:intergenic | 50.0% | |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_1:61766788-61766807 | Msa0741970:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_1:61766794-61766813 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_1:61767000-61767019 | Msa0741970:CDS | 50.0% | |
| AAGGTCCGGGGTTCGAATCT+CGG | - | chr5_1:61766420-61766439 | None:intergenic | 55.0% | |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_1:61766643-61766662 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCGAATCT+CGG | - | chr5_1:61766420-61766439 | None:intergenic | 55.0% | |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_1:61766643-61766662 | None:intergenic | 55.0% |
| GGTGGCCGAGATTCGAACCC+CGG | + | chr5_1:61766412-61766431 | Msa0741970:intron | 65.0% | |
| GGTGGCCGAGATTCGAACCC+CGG | + | chr5_1:61766412-61766431 | Msa0741970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 61766147 | 61767568 | 61766147 | ID=Msa0741970;Name=Msa0741970 |
| chr5_1 | mRNA | 61766147 | 61767568 | 61766147 | ID=Msa0741970-mRNA-1;Parent=Msa0741970;Name=Msa0741970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=88|1|1|1|0.5|0.4|5|209|157 |
| chr5_1 | exon | 61766147 | 61766281 | 61766147 | ID=Msa0741970-mRNA-1:exon:17954;Parent=Msa0741970-mRNA-1 |
| chr5_1 | exon | 61766644 | 61766670 | 61766644 | ID=Msa0741970-mRNA-1:exon:17955;Parent=Msa0741970-mRNA-1 |
| chr5_1 | exon | 61766756 | 61766878 | 61766756 | ID=Msa0741970-mRNA-1:exon:17956;Parent=Msa0741970-mRNA-1 |
| chr5_1 | exon | 61766976 | 61767225 | 61766976 | ID=Msa0741970-mRNA-1:exon:17957;Parent=Msa0741970-mRNA-1 |
| chr5_1 | exon | 61767333 | 61767568 | 61767333 | ID=Msa0741970-mRNA-1:exon:17958;Parent=Msa0741970-mRNA-1 |
| chr5_1 | five_prime_UTR | 61766147 | 61766234 | 61766147 | ID=Msa0741970-mRNA-1:five_prime_utr;Parent=Msa0741970-mRNA-1 |
| chr5_1 | CDS | 61766235 | 61766281 | 61766235 | ID=Msa0741970-mRNA-1:cds;Parent=Msa0741970-mRNA-1 |
| chr5_1 | CDS | 61766644 | 61766670 | 61766644 | ID=Msa0741970-mRNA-1:cds;Parent=Msa0741970-mRNA-1 |
| chr5_1 | CDS | 61766756 | 61766878 | 61766756 | ID=Msa0741970-mRNA-1:cds;Parent=Msa0741970-mRNA-1 |
| chr5_1 | CDS | 61766976 | 61767225 | 61766976 | ID=Msa0741970-mRNA-1:cds;Parent=Msa0741970-mRNA-1 |
| chr5_1 | CDS | 61767333 | 61767359 | 61767333 | ID=Msa0741970-mRNA-1:cds;Parent=Msa0741970-mRNA-1 |
| chr5_1 | three_prime_UTR | 61767360 | 61767568 | 61767360 | ID=Msa0741970-mRNA-1:three_prime_utr;Parent=Msa0741970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
