Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577740 | XP_013446588.1 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 4.88e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577740 | A0A072U446 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 2.33e-39 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104570 | Msa0577740 | 0.806352 | 8.578018e-50 | -8.615850e-47 |
| Msa0577650 | Msa0577740 | 0.998271 | 1.929403e-260 | -8.615850e-47 |
| Msa0577740 | Msa0616230 | 0.820650 | 6.132006e-53 | -8.615850e-47 |
| Msa0577740 | Msa0699560 | 0.810723 | 1.000077e-50 | -8.615850e-47 |
| Msa0577740 | Msa0706690 | 0.806541 | 7.823980e-50 | -8.615850e-47 |
| Msa0577740 | Msa0741970 | 0.831452 | 1.656170e-55 | -8.615850e-47 |
| Msa0577740 | Msa0786230 | 0.839273 | 1.748341e-57 | -8.615850e-47 |
| Msa0577740 | Msa0823170 | 0.842044 | 3.287242e-58 | -8.615850e-47 |
| Msa0577740 | Msa1343460 | 0.803614 | 3.204345e-49 | -8.615850e-47 |
| Msa0577740 | Msa1443210 | 0.995703 | 5.475579e-219 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577740 | MtrunA17_Chr8g0377521 | 100.000 | 70 | 0 | 0 | 8 | 77 | 1 | 70 | 4.49e-43 | 134 |
| Msa0577740 | MtrunA17_Chr3g0122331 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 1.69e-33 | 109 |
| Msa0577740 | MtrunA17_Chr8g0386301 | 72.059 | 68 | 19 | 0 | 10 | 77 | 2 | 69 | 6.61e-33 | 108 |
| Msa0577740 | MtrunA17_Chr7g0225171 | 67.647 | 68 | 22 | 0 | 10 | 77 | 2 | 69 | 9.75e-31 | 102 |
| Msa0577740 | MtrunA17_Chr7g0225011 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 1.14e-28 | 97.4 |
| Msa0577740 | MtrunA17_Chr8g0347211 | 64.706 | 68 | 24 | 0 | 10 | 77 | 2 | 69 | 6.46e-28 | 95.5 |
| Msa0577740 | MtrunA17_Chr7g0224981 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa0577740 | MtrunA17_Chr7g0224941 | 66.176 | 68 | 23 | 0 | 10 | 77 | 2 | 69 | 7.86e-28 | 95.5 |
| Msa0577740 | MtrunA17_Chr8g0377511 | 61.765 | 68 | 26 | 0 | 10 | 77 | 2 | 69 | 1.89e-27 | 94.4 |
| Msa0577740 | MtrunA17_Chr7g0225061 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 5.33e-27 | 93.2 |
| Msa0577740 | MtrunA17_Chr7g0225041 | 60.294 | 68 | 27 | 0 | 8 | 75 | 1 | 68 | 5.69e-27 | 93.2 |
| Msa0577740 | MtrunA17_Chr7g0225141 | 57.353 | 68 | 29 | 0 | 10 | 77 | 2 | 69 | 1.21e-24 | 87.4 |
| Msa0577740 | MtrunA17_Chr3g0122341 | 55.224 | 67 | 30 | 0 | 11 | 77 | 3 | 69 | 1.98e-23 | 84.3 |
| Msa0577740 | MtrunA17_Chr7g0225151 | 41.538 | 65 | 38 | 0 | 11 | 75 | 3 | 67 | 1.45e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577740 | AT3G48660.1 | 77.941 | 68 | 15 | 0 | 10 | 77 | 2 | 69 | 5.63e-34 | 112 |
| Msa0577740 | AT5G63500.1 | 76.471 | 68 | 16 | 0 | 10 | 77 | 2 | 69 | 8.64e-33 | 108 |
| Msa0577740 | AT3G27027.1 | 61.765 | 68 | 26 | 0 | 8 | 75 | 1 | 68 | 1.99e-26 | 92.0 |
| Msa0577740 | AT5G08391.1 | 55.882 | 68 | 30 | 0 | 10 | 77 | 2 | 69 | 1.48e-25 | 90.1 |
| Msa0577740 | AT3G27030.1 | 58.667 | 75 | 31 | 0 | 3 | 77 | 68 | 142 | 4.78e-25 | 90.9 |
| Msa0577740 | AT3G27030.1 | 63.636 | 66 | 24 | 0 | 11 | 76 | 3 | 68 | 2.08e-24 | 89.4 |
| Msa0577740 | AT5G40980.1 | 68.421 | 57 | 18 | 0 | 8 | 64 | 1 | 57 | 6.36e-24 | 85.9 |
| Msa0577740 | AT3G01950.1 | 54.286 | 70 | 32 | 0 | 8 | 77 | 1 | 70 | 6.75e-24 | 85.9 |
| Msa0577740 | AT5G14110.1 | 52.941 | 68 | 32 | 0 | 8 | 75 | 1 | 68 | 1.68e-22 | 82.4 |
| Msa0577740 | AT3G01940.1 | 65.152 | 66 | 23 | 0 | 10 | 75 | 4 | 69 | 2.62e-20 | 76.6 |
| Msa0577740 | AT5G50660.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa0577740 | AT5G50560.1 | 59.016 | 61 | 25 | 0 | 10 | 70 | 2 | 62 | 4.52e-15 | 63.5 |
| Msa0577740 | AT5G40960.1 | 40.909 | 66 | 39 | 0 | 11 | 76 | 3 | 68 | 5.30e-11 | 53.1 |
Find 32 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGGAGGGTGGTAGCTTT+TGG | 0.170404 | 4_1:-82053185 | Msa0577740:CDS |
| GTTAGAAAAGAATAGCAATT+TGG | 0.188910 | 4_1:-82053300 | Msa0577740:intron |
| AACAAGTGGTCTCTCTATTT+TGG | 0.192974 | 4_1:-82053153 | Msa0577740:CDS |
| CAAAGTGATGGCTGCTGATT+GGG | 0.288404 | 4_1:-82053276 | Msa0577740:CDS |
| TTAGAAAAGAATAGCAATTT+GGG | 0.330584 | 4_1:-82053299 | Msa0577740:intron |
| TTGATTATCCAGAGTAGATA+TGG | 0.359173 | 4_1:+82053075 | None:intergenic |
| GTCCATACCATCATCTTCTT+CGG | 0.384903 | 4_1:-82053131 | Msa0577740:CDS |
| ACTGTTCCAGCTCCCGGCTA+AGG | 0.387885 | 4_1:-82053204 | Msa0577740:CDS |
| TGCTGATTGGGCTCCGGTGG+TGG | 0.391799 | 4_1:-82053264 | Msa0577740:CDS |
| GCAAAGTGATGGCTGCTGAT+TGG | 0.392576 | 4_1:-82053277 | Msa0577740:CDS |
| CCCTCCCCTTAGCCGGGAGC+TGG | 0.420899 | 4_1:+82053198 | None:intergenic |
| CTGTTCCAGCTCCCGGCTAA+GGG | 0.432627 | 4_1:-82053203 | Msa0577740:CDS |
| CTGTTTGTGCTACTAAGTCC+AGG | 0.452174 | 4_1:-82053230 | Msa0577740:CDS |
| CCAGCTCCCGGCTAAGGGGA+GGG | 0.482266 | 4_1:-82053198 | Msa0577740:CDS |
| GCTACCACCCTCCCCTTAGC+CGG | 0.484903 | 4_1:+82053191 | None:intergenic |
| CTACCACCCTCCCCTTAGCC+GGG | 0.486618 | 4_1:+82053192 | None:intergenic |
| AGGGCTACTGTTCCAGCTCC+CGG | 0.497556 | 4_1:-82053210 | Msa0577740:CDS |
| GGCTGCTGATTGGGCTCCGG+TGG | 0.498987 | 4_1:-82053267 | Msa0577740:CDS |
| TCCAGCTCCCGGCTAAGGGG+AGG | 0.518990 | 4_1:-82053199 | Msa0577740:CDS |
| GTCCGAAGAAGATGATGGTA+TGG | 0.522758 | 4_1:+82053129 | None:intergenic |
| GATGGCTGCTGATTGGGCTC+CGG | 0.524505 | 4_1:-82053270 | Msa0577740:CDS |
| ATTGGTGTCCATATCTACTC+TGG | 0.527323 | 4_1:-82053083 | Msa0577740:CDS |
| GGGAGCTGGAACAGTAGCCC+TGG | 0.543144 | 4_1:+82053212 | None:intergenic |
| GGCTCCGGTGGTGGTATCTG+TGG | 0.570677 | 4_1:-82053255 | Msa0577740:CDS |
| GCTCCCGGCTAAGGGGAGGG+TGG | 0.576467 | 4_1:-82053195 | Msa0577740:CDS |
| TAGCAATTTGGGCAAAGTGA+TGG | 0.580819 | 4_1:-82053288 | Msa0577740:CDS |
| TGTTCCAGCTCCCGGCTAAG+GGG | 0.589394 | 4_1:-82053202 | Msa0577740:CDS |
| AACGAGTCCGAAGAAGATGA+TGG | 0.602203 | 4_1:+82053124 | None:intergenic |
| AGCACCACAGATACCACCAC+CGG | 0.611357 | 4_1:+82053251 | None:intergenic |
| TTTGGGAGCATGCAAACAAG+TGG | 0.621437 | 4_1:-82053167 | Msa0577740:CDS |
| TGTTTGTGCTACTAAGTCCA+GGG | 0.634532 | 4_1:-82053229 | Msa0577740:CDS |
| AGAGTAGATATGGACACCAA+TGG | 0.644712 | 4_1:+82053085 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATATAACTGAAT+GGG | + | chr4_1:82053144-82053163 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | + | chr4_1:82053145-82053164 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | - | chr4_1:82053163-82053182 | Msa0577740:CDS | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | + | chr4_1:82053336-82053355 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | + | chr4_1:82053373-82053392 | None:intergenic | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | - | chr4_1:82053974-82053993 | Msa0577740:intron | 10.0% |
| !! | AAATATTAATATAACTGAAT+GGG | + | chr4_1:82053144-82053163 | None:intergenic | 10.0% |
| !! | AAAATATTAATATAACTGAA+TGG | + | chr4_1:82053145-82053164 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAACATGTAA+AGG | - | chr4_1:82053163-82053182 | Msa0577740:CDS | 10.0% |
| !!! | AAAAATGATTAAATATTTTG+AGG | + | chr4_1:82053336-82053355 | None:intergenic | 10.0% |
| !!! | GAAGTATTTTTTTAATAATA+AGG | + | chr4_1:82053373-82053392 | None:intergenic | 10.0% |
| !! | TGTATATTAGTATAAAAATA+CGG | - | chr4_1:82053974-82053993 | Msa0577740:intron | 10.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | + | chr4_1:82053290-82053309 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | - | chr4_1:82053289-82053308 | Msa0577740:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | + | chr4_1:82053370-82053389 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | - | chr4_1:82053620-82053639 | Msa0577740:intron | 15.0% |
| !! | ACAAAACGTAAAAAAAAAAT+TGG | - | chr4_1:82053655-82053674 | Msa0577740:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | - | chr4_1:82053697-82053716 | Msa0577740:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | + | chr4_1:82053948-82053967 | None:intergenic | 15.0% |
| !!! | AAACATTATTTTTGACTAAA+AGG | + | chr4_1:82053290-82053309 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAAAAATAATGTT+TGG | - | chr4_1:82053289-82053308 | Msa0577740:intron | 15.0% |
| !!! | GTATTTTTTTAATAATAAGG+AGG | + | chr4_1:82053370-82053389 | None:intergenic | 15.0% |
| !! | TTATCAATATCATATTTGTT+TGG | - | chr4_1:82053620-82053639 | Msa0577740:intron | 15.0% |
| !! | ACAAAACGTAAAAAAAAAAT+TGG | - | chr4_1:82053655-82053674 | Msa0577740:intron | 15.0% |
| !!! | AAAAGGTTAAACTTTATTTA+CGG | - | chr4_1:82053697-82053716 | Msa0577740:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | + | chr4_1:82053948-82053967 | None:intergenic | 15.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | - | chr4_1:82053101-82053120 | Msa0577740:CDS | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | - | chr4_1:82053102-82053121 | Msa0577740:CDS | 20.0% |
| !! | ATCTACGAAAAATTCTAATA+CGG | + | chr4_1:82053438-82053457 | None:intergenic | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | + | chr4_1:82053611-82053630 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | + | chr4_1:82053856-82053875 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | - | chr4_1:82054014-82054033 | Msa0577740:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | - | chr4_1:82054123-82054142 | Msa0577740:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | - | chr4_1:82054124-82054143 | Msa0577740:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | + | chr4_1:82054295-82054314 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | + | chr4_1:82054296-82054315 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | - | chr4_1:82054674-82054693 | Msa0577740:intron | 20.0% |
| !!! | AGATAACATGATTTTGAAAA+AGG | - | chr4_1:82053101-82053120 | Msa0577740:CDS | 20.0% |
| !!! | GATAACATGATTTTGAAAAA+GGG | - | chr4_1:82053102-82053121 | Msa0577740:CDS | 20.0% |
| !! | ATCTACGAAAAATTCTAATA+CGG | + | chr4_1:82053438-82053457 | None:intergenic | 20.0% |
| !!! | GATATTGATAAACTTTTACA+AGG | + | chr4_1:82053611-82053630 | None:intergenic | 20.0% |
| !! | TAAAGATAAAAAATGTGCAT+TGG | + | chr4_1:82053856-82053875 | None:intergenic | 20.0% |
| !! | AAAATTGTATATTGTCAAAC+AGG | - | chr4_1:82054014-82054033 | Msa0577740:intron | 20.0% |
| !! | TTATATATGGATTTGTCTAT+TGG | - | chr4_1:82054123-82054142 | Msa0577740:intron | 20.0% |
| !! | TATATATGGATTTGTCTATT+GGG | - | chr4_1:82054124-82054143 | Msa0577740:intron | 20.0% |
| !! | ATATCATTTCTATTCTACTT+GGG | + | chr4_1:82054295-82054314 | None:intergenic | 20.0% |
| !! | AATATCATTTCTATTCTACT+TGG | + | chr4_1:82054296-82054315 | None:intergenic | 20.0% |
| !! | TTAGAAAAGAATAGCAATTT+GGG | - | chr4_1:82054674-82054693 | Msa0577740:intron | 20.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | - | chr4_1:82053582-82053601 | Msa0577740:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | - | chr4_1:82053707-82053726 | Msa0577740:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | - | chr4_1:82054110-82054129 | Msa0577740:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | - | chr4_1:82054424-82054443 | Msa0577740:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | - | chr4_1:82054429-82054448 | Msa0577740:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | - | chr4_1:82054505-82054524 | Msa0577740:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | - | chr4_1:82054506-82054525 | Msa0577740:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | - | chr4_1:82054673-82054692 | Msa0577740:intron | 25.0% |
| !!! | TTTTTTCCTTCTCTTTTCTA+AGG | - | chr4_1:82053582-82053601 | Msa0577740:intron | 25.0% |
| !! | ACTTTATTTACGGAATTTAC+AGG | - | chr4_1:82053707-82053726 | Msa0577740:intron | 25.0% |
| ! | GTGAGATGACAAATTATATA+TGG | - | chr4_1:82054110-82054129 | Msa0577740:intron | 25.0% |
| ! | AATCGTACAAATATCATTTC+TGG | - | chr4_1:82054424-82054443 | Msa0577740:intron | 25.0% |
| !!! | TACAAATATCATTTCTGGTT+TGG | - | chr4_1:82054429-82054448 | Msa0577740:intron | 25.0% |
| !! | TTTATTTGTTTCTTCGAAGA+TGG | - | chr4_1:82054505-82054524 | Msa0577740:intron | 25.0% |
| !! | TTATTTGTTTCTTCGAAGAT+GGG | - | chr4_1:82054506-82054525 | Msa0577740:intron | 25.0% |
| ! | GTTAGAAAAGAATAGCAATT+TGG | - | chr4_1:82054673-82054692 | Msa0577740:intron | 25.0% |
| !! | AACATGATTTTGAAAAAGGG+AGG | - | chr4_1:82053105-82053124 | Msa0577740:CDS | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | + | chr4_1:82053263-82053282 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | + | chr4_1:82053264-82053283 | None:intergenic | 30.0% | |
| AAAAATTCTAATACGGTCAC+CGG | + | chr4_1:82053431-82053450 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | - | chr4_1:82053515-82053534 | Msa0577740:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | - | chr4_1:82053671-82053690 | Msa0577740:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | - | chr4_1:82053672-82053691 | Msa0577740:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | - | chr4_1:82053729-82053748 | Msa0577740:intron | 30.0% | |
| !!! | GGAGTACTACTTTTTTACTT+GGG | + | chr4_1:82053790-82053809 | None:intergenic | 30.0% |
| TCAACTAGGTCATCTAATAA+GGG | + | chr4_1:82053819-82053838 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | + | chr4_1:82054099-82054118 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | + | chr4_1:82054488-82054507 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | + | chr4_1:82054595-82054614 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | + | chr4_1:82054605-82054624 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | - | chr4_1:82054602-82054621 | Msa0577740:intron | 30.0% | |
| !! | AACATGATTTTGAAAAAGGG+AGG | - | chr4_1:82053105-82053124 | Msa0577740:CDS | 30.0% |
| TTGTTGTGTTCATTTACCAT+GGG | + | chr4_1:82053263-82053282 | None:intergenic | 30.0% | |
| ATTGTTGTGTTCATTTACCA+TGG | + | chr4_1:82053264-82053283 | None:intergenic | 30.0% | |
| AAAAATTCTAATACGGTCAC+CGG | + | chr4_1:82053431-82053450 | None:intergenic | 30.0% | |
| !!! | ATTGATGTTGTAGCCTTTTT+TGG | - | chr4_1:82053515-82053534 | Msa0577740:intron | 30.0% |
| AAATTGGTTGTCTAAAAGTG+TGG | - | chr4_1:82053671-82053690 | Msa0577740:intron | 30.0% | |
| ! | AATTGGTTGTCTAAAAGTGT+GGG | - | chr4_1:82053672-82053691 | Msa0577740:intron | 30.0% |
| GAGCAGAATTAAAATTTGAG+AGG | - | chr4_1:82053729-82053748 | Msa0577740:intron | 30.0% | |
| !!! | GGAGTACTACTTTTTTACTT+GGG | + | chr4_1:82053790-82053809 | None:intergenic | 30.0% |
| TCAACTAGGTCATCTAATAA+GGG | + | chr4_1:82053819-82053838 | None:intergenic | 30.0% | |
| TCATCTCACTTTACTCTTAT+TGG | + | chr4_1:82054099-82054118 | None:intergenic | 30.0% | |
| ! | AAAAAGTAGTTTGTAACGTG+AGG | + | chr4_1:82054488-82054507 | None:intergenic | 30.0% |
| CTTGTTAAATAGGAACGAAA+AGG | + | chr4_1:82054595-82054614 | None:intergenic | 30.0% | |
| !! | CCATTGTAAGCTTGTTAAAT+AGG | + | chr4_1:82054605-82054624 | None:intergenic | 30.0% |
| CCTATTTAACAAGCTTACAA+TGG | - | chr4_1:82054602-82054621 | Msa0577740:intron | 30.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | - | chr4_1:82053404-82053423 | Msa0577740:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | - | chr4_1:82053409-82053428 | Msa0577740:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | + | chr4_1:82053531-82053550 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | - | chr4_1:82053673-82053692 | Msa0577740:intron | 35.0% |
| !!! | GGGAGTACTACTTTTTTACT+TGG | + | chr4_1:82053791-82053810 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | + | chr4_1:82053820-82053839 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | - | chr4_1:82053989-82054008 | Msa0577740:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | + | chr4_1:82054083-82054102 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | + | chr4_1:82054087-82054106 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | - | chr4_1:82054460-82054479 | Msa0577740:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | - | chr4_1:82054820-82054839 | Msa0577740:intron | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | - | chr4_1:82054872-82054891 | Msa0577740:intron | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | + | chr4_1:82054876-82054895 | None:intergenic | 35.0% | |
| ! | GTGACCAAACACTATTTCTT+TGG | - | chr4_1:82053404-82053423 | Msa0577740:intron | 35.0% |
| ! | CAAACACTATTTCTTTGGTC+CGG | - | chr4_1:82053409-82053428 | Msa0577740:intron | 35.0% |
| AGGCTAACAACAACCAAAAA+AGG | + | chr4_1:82053531-82053550 | None:intergenic | 35.0% | |
| ! | ATTGGTTGTCTAAAAGTGTG+GGG | - | chr4_1:82053673-82053692 | Msa0577740:intron | 35.0% |
| !!! | GGGAGTACTACTTTTTTACT+TGG | + | chr4_1:82053791-82053810 | None:intergenic | 35.0% |
| GTCAACTAGGTCATCTAATA+AGG | + | chr4_1:82053820-82053839 | None:intergenic | 35.0% | |
| AAATACGGTCAAAGTATGTC+AGG | - | chr4_1:82053989-82054008 | Msa0577740:intron | 35.0% | |
| TTATTGGAGTTGTTCTTGGA+TGG | + | chr4_1:82054083-82054102 | None:intergenic | 35.0% | |
| ACTCTTATTGGAGTTGTTCT+TGG | + | chr4_1:82054087-82054106 | None:intergenic | 35.0% | |
| ATGTGTAACATCAATGTGCA+AGG | - | chr4_1:82054460-82054479 | Msa0577740:intron | 35.0% | |
| ! | AACAAGTGGTCTCTCTATTT+TGG | - | chr4_1:82054820-82054839 | Msa0577740:intron | 35.0% |
| !! | ACCATTTTTCTACTTGCCAT+TGG | - | chr4_1:82054872-82054891 | Msa0577740:intron | 35.0% |
| ACCAATGGCAAGTAGAAAAA+TGG | + | chr4_1:82054876-82054895 | None:intergenic | 35.0% | |
| CTTGAACTATGACTTACACG+TGG | + | chr4_1:82053212-82053231 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | + | chr4_1:82053258-82053277 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | + | chr4_1:82053411-82053430 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | - | chr4_1:82053480-82053499 | Msa0577740:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | - | chr4_1:82053534-82053553 | Msa0577740:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | + | chr4_1:82053591-82053610 | None:intergenic | 40.0% | |
| ! | TTGGTTGTCTAAAAGTGTGG+GGG | - | chr4_1:82053674-82053693 | Msa0577740:intron | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | + | chr4_1:82053815-82053834 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATAAGAGA+CGG | - | chr4_1:82054032-82054051 | Msa0577740:intron | 40.0% | |
| TCCTTCCGTCTCTTATTAGA+TGG | + | chr4_1:82054040-82054059 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | + | chr4_1:82054286-82054305 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | + | chr4_1:82054560-82054579 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | + | chr4_1:82054573-82054592 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | - | chr4_1:82054685-82054704 | Msa0577740:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | - | chr4_1:82054744-82054763 | Msa0577740:intron | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | - | chr4_1:82054842-82054861 | Msa0577740:intron | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | + | chr4_1:82054891-82054910 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | - | chr4_1:82054890-82054909 | Msa0577740:intron | 40.0% |
| CTTGAACTATGACTTACACG+TGG | + | chr4_1:82053212-82053231 | None:intergenic | 40.0% | |
| GTGTTCATTTACCATGGGAA+AGG | + | chr4_1:82053258-82053277 | None:intergenic | 40.0% | |
| CGGACCAAAGAAATAGTGTT+TGG | + | chr4_1:82053411-82053430 | None:intergenic | 40.0% | |
| ! | GCTTCAAGTCTGATTTGTCT+TGG | - | chr4_1:82053480-82053499 | Msa0577740:intron | 40.0% |
| !! | TTGGTTGTTGTTAGCCTTTG+TGG | - | chr4_1:82053534-82053553 | Msa0577740:intron | 40.0% |
| AGGTGTCCTTAGAAAAGAGA+AGG | + | chr4_1:82053591-82053610 | None:intergenic | 40.0% | |
| ! | TTGGTTGTCTAAAAGTGTGG+GGG | - | chr4_1:82053674-82053693 | Msa0577740:intron | 40.0% |
| CTAGGTCATCTAATAAGGGA+CGG | + | chr4_1:82053815-82053834 | None:intergenic | 40.0% | |
| ACAGGCCATCTAATAAGAGA+CGG | - | chr4_1:82054032-82054051 | Msa0577740:intron | 40.0% | |
| TCCTTCCGTCTCTTATTAGA+TGG | + | chr4_1:82054040-82054059 | None:intergenic | 40.0% | |
| ! | CTATTCTACTTGGGTGTTGT+TGG | + | chr4_1:82054286-82054305 | None:intergenic | 40.0% |
| ATGTGTGAGGCAATTGATTG+AGG | + | chr4_1:82054560-82054579 | None:intergenic | 40.0% | |
| GTGATTCTGATCTATGTGTG+AGG | + | chr4_1:82054573-82054592 | None:intergenic | 40.0% | |
| TAGCAATTTGGGCAAAGTGA+TGG | - | chr4_1:82054685-82054704 | Msa0577740:intron | 40.0% | |
| ! | TGTTTGTGCTACTAAGTCCA+GGG | - | chr4_1:82054744-82054763 | Msa0577740:intron | 40.0% |
| GTCCATACCATCATCTTCTT+CGG | - | chr4_1:82054842-82054861 | Msa0577740:intron | 40.0% | |
| AGAGTAGATATGGACACCAA+TGG | + | chr4_1:82054891-82054910 | None:intergenic | 40.0% | |
| ! | ATTGGTGTCCATATCTACTC+TGG | - | chr4_1:82054890-82054909 | Msa0577740:intron | 40.0% |
| AGTCATAGTTCAAGTGCACC+TGG | - | chr4_1:82053218-82053237 | Msa0577740:CDS | 45.0% | |
| ATAGTTCAAGTGCACCTGGT+GGG | - | chr4_1:82053222-82053241 | Msa0577740:CDS | 45.0% | |
| GAAAGGATTCTCCTTTCCCA+TGG | - | chr4_1:82053244-82053263 | Msa0577740:CDS | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | + | chr4_1:82053551-82053570 | None:intergenic | 45.0% | |
| ! | GTCTAAAAGTGTGGGGGAAA+AGG | - | chr4_1:82053680-82053699 | Msa0577740:intron | 45.0% |
| GTCATCTAATAAGGGACGGA+GGG | + | chr4_1:82053811-82053830 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | + | chr4_1:82053833-82053852 | None:intergenic | 45.0% | |
| GCCATCTAATAAGAGACGGA+AGG | - | chr4_1:82054036-82054055 | Msa0577740:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | + | chr4_1:82054553-82054572 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | - | chr4_1:82054621-82054640 | Msa0577740:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | - | chr4_1:82054697-82054716 | Msa0577740:intron | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | - | chr4_1:82054743-82054762 | Msa0577740:intron | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | - | chr4_1:82054806-82054825 | Msa0577740:intron | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | + | chr4_1:82054847-82054866 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | + | chr4_1:82054852-82054871 | None:intergenic | 45.0% | |
| AGTCATAGTTCAAGTGCACC+TGG | - | chr4_1:82053218-82053237 | Msa0577740:CDS | 45.0% | |
| ATAGTTCAAGTGCACCTGGT+GGG | - | chr4_1:82053222-82053241 | Msa0577740:CDS | 45.0% | |
| GAAAGGATTCTCCTTTCCCA+TGG | - | chr4_1:82053244-82053263 | Msa0577740:CDS | 45.0% | |
| GACGAACAAGAAAGCCACAA+AGG | + | chr4_1:82053551-82053570 | None:intergenic | 45.0% | |
| ! | GTCTAAAAGTGTGGGGGAAA+AGG | - | chr4_1:82053680-82053699 | Msa0577740:intron | 45.0% |
| GTCATCTAATAAGGGACGGA+GGG | + | chr4_1:82053811-82053830 | None:intergenic | 45.0% | |
| TACGTGTGTCAGAGTCAACT+AGG | + | chr4_1:82053833-82053852 | None:intergenic | 45.0% | |
| GCCATCTAATAAGAGACGGA+AGG | - | chr4_1:82054036-82054055 | Msa0577740:intron | 45.0% | |
| AGGCAATTGATTGAGGCTGA+TGG | + | chr4_1:82054553-82054572 | None:intergenic | 45.0% | |
| ATGGATCACACAGCAGATTG+TGG | - | chr4_1:82054621-82054640 | Msa0577740:intron | 45.0% | |
| ! | CAAAGTGATGGCTGCTGATT+GGG | - | chr4_1:82054697-82054716 | Msa0577740:intron | 45.0% |
| ! | CTGTTTGTGCTACTAAGTCC+AGG | - | chr4_1:82054743-82054762 | Msa0577740:intron | 45.0% |
| ! | TTTGGGAGCATGCAAACAAG+TGG | - | chr4_1:82054806-82054825 | Msa0577740:intron | 45.0% |
| ! | GTCCGAAGAAGATGATGGTA+TGG | + | chr4_1:82054847-82054866 | None:intergenic | 45.0% |
| AACGAGTCCGAAGAAGATGA+TGG | + | chr4_1:82054852-82054871 | None:intergenic | 45.0% | |
| CATAGTTCAAGTGCACCTGG+TGG | - | chr4_1:82053221-82053240 | Msa0577740:CDS | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | + | chr4_1:82053239-82053258 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | + | chr4_1:82053812-82053831 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | + | chr4_1:82054545-82054564 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | - | chr4_1:82054696-82054715 | Msa0577740:intron | 50.0% | |
| CATAGTTCAAGTGCACCTGG+TGG | - | chr4_1:82053221-82053240 | Msa0577740:CDS | 50.0% | |
| AAGGAGAATCCTTTCCCACC+AGG | + | chr4_1:82053239-82053258 | None:intergenic | 50.0% | |
| GGTCATCTAATAAGGGACGG+AGG | + | chr4_1:82053812-82053831 | None:intergenic | 50.0% | |
| GATTGAGGCTGATGGAAGCA+AGG | + | chr4_1:82054545-82054564 | None:intergenic | 50.0% | |
| GCAAAGTGATGGCTGCTGAT+TGG | - | chr4_1:82054696-82054715 | Msa0577740:intron | 50.0% | |
| CTTACACGTGGCAGTAGAGC+AGG | + | chr4_1:82053200-82053219 | None:intergenic | 55.0% | |
| TCAAGTGCACCTGGTGGGAA+AGG | - | chr4_1:82053227-82053246 | Msa0577740:CDS | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | + | chr4_1:82054725-82054744 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | - | chr4_1:82054788-82054807 | Msa0577740:intron | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | - | chr4_1:82054789-82054808 | Msa0577740:intron | 55.0% |
| CTTACACGTGGCAGTAGAGC+AGG | + | chr4_1:82053200-82053219 | None:intergenic | 55.0% | |
| TCAAGTGCACCTGGTGGGAA+AGG | - | chr4_1:82053227-82053246 | Msa0577740:CDS | 55.0% | |
| AGCACCACAGATACCACCAC+CGG | + | chr4_1:82054725-82054744 | None:intergenic | 55.0% | |
| ! | AAGGGGAGGGTGGTAGCTTT+TGG | - | chr4_1:82054788-82054807 | Msa0577740:intron | 55.0% |
| ! | AGGGGAGGGTGGTAGCTTTT+GGG | - | chr4_1:82054789-82054808 | Msa0577740:intron | 55.0% |
| ! | GATGGCTGCTGATTGGGCTC+CGG | - | chr4_1:82054703-82054722 | Msa0577740:intron | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | - | chr4_1:82054763-82054782 | Msa0577740:intron | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | - | chr4_1:82054769-82054788 | Msa0577740:intron | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | - | chr4_1:82054770-82054789 | Msa0577740:intron | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | - | chr4_1:82054771-82054790 | Msa0577740:intron | 60.0% | |
| ! | GATGGCTGCTGATTGGGCTC+CGG | - | chr4_1:82054703-82054722 | Msa0577740:intron | 60.0% |
| AGGGCTACTGTTCCAGCTCC+CGG | - | chr4_1:82054763-82054782 | Msa0577740:intron | 60.0% | |
| ACTGTTCCAGCTCCCGGCTA+AGG | - | chr4_1:82054769-82054788 | Msa0577740:intron | 60.0% | |
| CTGTTCCAGCTCCCGGCTAA+GGG | - | chr4_1:82054770-82054789 | Msa0577740:intron | 60.0% | |
| TGTTCCAGCTCCCGGCTAAG+GGG | - | chr4_1:82054771-82054790 | Msa0577740:intron | 60.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | - | chr4_1:82054709-82054728 | Msa0577740:intron | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | - | chr4_1:82054718-82054737 | Msa0577740:intron | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | + | chr4_1:82054764-82054783 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | + | chr4_1:82054784-82054803 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | + | chr4_1:82054785-82054804 | None:intergenic | 65.0% | |
| ! | TGCTGATTGGGCTCCGGTGG+TGG | - | chr4_1:82054709-82054728 | Msa0577740:intron | 65.0% |
| ! | GGCTCCGGTGGTGGTATCTG+TGG | - | chr4_1:82054718-82054737 | Msa0577740:intron | 65.0% |
| GGGAGCTGGAACAGTAGCCC+TGG | + | chr4_1:82054764-82054783 | None:intergenic | 65.0% | |
| CTACCACCCTCCCCTTAGCC+GGG | + | chr4_1:82054784-82054803 | None:intergenic | 65.0% | |
| GCTACCACCCTCCCCTTAGC+CGG | + | chr4_1:82054785-82054804 | None:intergenic | 65.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | - | chr4_1:82054706-82054725 | Msa0577740:intron | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | - | chr4_1:82054774-82054793 | Msa0577740:intron | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | - | chr4_1:82054775-82054794 | Msa0577740:intron | 70.0% | |
| ! | GGCTGCTGATTGGGCTCCGG+TGG | - | chr4_1:82054706-82054725 | Msa0577740:intron | 70.0% |
| TCCAGCTCCCGGCTAAGGGG+AGG | - | chr4_1:82054774-82054793 | Msa0577740:intron | 70.0% | |
| CCAGCTCCCGGCTAAGGGGA+GGG | - | chr4_1:82054775-82054794 | Msa0577740:intron | 70.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | + | chr4_1:82054778-82054797 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | - | chr4_1:82054778-82054797 | Msa0577740:intron | 75.0% | |
| CCCTCCCCTTAGCCGGGAGC+TGG | + | chr4_1:82054778-82054797 | None:intergenic | 75.0% | |
| GCTCCCGGCTAAGGGGAGGG+TGG | - | chr4_1:82054778-82054797 | Msa0577740:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82053079 | 82054916 | 82053079 | ID=Msa0577740;Name=Msa0577740 |
| chr4_1 | mRNA | 82053079 | 82054916 | 82053079 | ID=Msa0577740-mRNA-1;Parent=Msa0577740;Name=Msa0577740-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.5|0|0|2|0|77 |
| chr4_1 | exon | 82054912 | 82054916 | 82054912 | ID=Msa0577740-mRNA-1:exon:29655;Parent=Msa0577740-mRNA-1 |
| chr4_1 | exon | 82053079 | 82053307 | 82053079 | ID=Msa0577740-mRNA-1:exon:29654;Parent=Msa0577740-mRNA-1 |
| chr4_1 | CDS | 82054912 | 82054916 | 82054912 | ID=Msa0577740-mRNA-1:cds;Parent=Msa0577740-mRNA-1 |
| chr4_1 | CDS | 82053079 | 82053307 | 82053079 | ID=Msa0577740-mRNA-1:cds;Parent=Msa0577740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
