AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616230 MtrunA17_Chr8g0375551 98.496 133 0 1 1 133 34 164 6.92e-94 268
Msa0616230 MtrunA17_Chr5g0410051 36.842 76 47 1 14 89 50 124 7.58e-14 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616230 AT1G31940.1 46.939 49 26 0 18 66 53 101 3.22e-12 60.5
Msa0616230 AT2G35585.1 41.818 55 31 1 14 67 48 102 4.84e-11 57.4

Find 68 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAAATAGTGATATTC+TGG 0.208224 4_2:-65997771 None:intergenic
CGCTTTCGCACTCCTCGAGC+TGG 0.260475 4_2:-65997664 None:intergenic
CCATTGATCAAAAGGGTAAT+TGG 0.293161 4_2:+65996500 Msa0616230:five_prime_UTR
AAAGGAGAGTGAGCATAAAA+AGG 0.300414 4_2:-65996300 None:intergenic
TTTATAGTTATATATGCTAA+TGG 0.325570 4_2:+65996415 Msa0616230:five_prime_UTR
TTAGATAGACAAATGTTTGT+AGG 0.331683 4_2:+65998071 Msa0616230:three_prime_UTR
TCTTCATGCACCAATGCTTC+CGG 0.370311 4_2:-65997916 None:intergenic
TTTCTTGTCCATTGATCAAA+AGG 0.371603 4_2:+65996492 Msa0616230:five_prime_UTR
GGCTCCATAGGATGTTCAAC+TGG 0.393061 4_2:-65996793 None:intergenic
TTATAGTTATATATGCTAAT+GGG 0.403730 4_2:+65996416 Msa0616230:five_prime_UTR
AGGAAGAGAGGTGAGATGTC+TGG 0.414508 4_2:+65997604 Msa0616230:CDS
GCTTTCGCACTCCTCGAGCT+GGG 0.417036 4_2:-65997663 None:intergenic
TTTCCCAGTTGAACATCCTA+TGG 0.422933 4_2:+65996789 Msa0616230:CDS
TTAGCTCGGTTGGTGAGTTA+AGG 0.434129 4_2:-65998153 None:intergenic
ACACTAATGACTGAAGATTC+AGG 0.437311 4_2:-65996850 None:intergenic
ACCCTCACTCATGGATCATC+AGG 0.442814 4_2:+65997694 Msa0616230:CDS
TTGGAAAATAGTGATATTCT+GGG 0.444826 4_2:-65997770 None:intergenic
TTTCCAAGTGCTTCAGCAGT+TGG 0.454811 4_2:+65997786 Msa0616230:CDS
AGAGGTGAGATGTCTGGGTC+TGG 0.464003 4_2:+65997610 Msa0616230:CDS
TTCACTTAGGAAAGAGAAAG+AGG 0.470639 4_2:-65996333 None:intergenic
AATTGGAGAATTTATTGATA+CGG 0.474812 4_2:+65996517 Msa0616230:five_prime_UTR
AGAGGAACACAGAAAGCATA+AGG 0.478521 4_2:+65997584 Msa0616230:CDS
CAGTCATAGAGTTAGTTAAG+AGG 0.484753 4_2:-65996467 None:intergenic
AACGACATATGATGAAAACT+TGG 0.485073 4_2:-65997942 None:intergenic
GTAAGATTTATGTTTCACTT+AGG 0.493864 4_2:-65996346 None:intergenic
TGTCCAACTGCTGAAGCACT+TGG 0.496596 4_2:-65997789 None:intergenic
TCTTCATCCGGTGGCTCCAT+AGG 0.504589 4_2:-65996805 None:intergenic
GGGTCTGGACAAAGAACAGC+TGG 0.506189 4_2:+65997625 Msa0616230:CDS
AGATGTGGCATTCTCATCAA+TGG 0.507933 4_2:-65997733 None:intergenic
ATATTCTGGGATTGTAGAGG+AGG 0.508528 4_2:-65997757 None:intergenic
CGGCATCACACCCTCACTCA+TGG 0.508751 4_2:+65997685 Msa0616230:CDS
GAAAGAGGAGAAGAAATGAA+AGG 0.518038 4_2:-65996318 None:intergenic
CCTTGCATGGAATGTTGTGA+TGG 0.518542 4_2:-65997840 None:intergenic
GTCCACATAGTTAGCTCGGT+TGG 0.520181 4_2:-65998163 None:intergenic
ATGACTGAAGATTCAGGCAT+TGG 0.525006 4_2:-65996844 None:intergenic
GCCACCGGATGAAGATCGTC+CGG 0.527419 4_2:+65996813 Msa0616230:CDS
GGAAGAGAGGTGAGATGTCT+GGG 0.529996 4_2:+65997605 Msa0616230:CDS
AAAATGAATCCCTCCTTGCA+TGG 0.531998 4_2:-65997853 None:intergenic
AGAGCAAAGACCGGAAGCAT+TGG 0.532791 4_2:+65997906 Msa0616230:three_prime_UTR
CAGCTCGAGGAGTGCGAAAG+CGG 0.537056 4_2:+65997665 Msa0616230:CDS
TGGACAAAGAACAGCTGGCA+TGG 0.537925 4_2:+65997630 Msa0616230:CDS
ATGAAAGGATGCATGAAAAG+AGG 0.540753 4_2:+65997566 Msa0616230:CDS
TCAGGCATTGGACATTTCAC+CGG 0.545910 4_2:-65996832 None:intergenic
TATTCTGGGATTGTAGAGGA+GGG 0.548828 4_2:-65997756 None:intergenic
CTTGCATGGAATGTTGTGAT+GGG 0.556419 4_2:-65997839 None:intergenic
TTCACCGGACGATCTTCATC+CGG 0.561909 4_2:-65996817 None:intergenic
TACACAGAACAGTATCATCA+TGG 0.562804 4_2:+65996711 Msa0616230:exon
CTTTCGCACTCCTCGAGCTG+GGG 0.565176 4_2:-65997662 None:intergenic
TGAACATCCTATGGAGCCAC+CGG 0.581194 4_2:+65996798 Msa0616230:CDS
ACAGAAAGCATAAGGAAGAG+AGG 0.581626 4_2:+65997592 Msa0616230:CDS
TTCTTGTCCATTGATCAAAA+GGG 0.584575 4_2:+65996493 Msa0616230:five_prime_UTR
ACGACATATGATGAAAACTT+GGG 0.591479 4_2:-65997941 None:intergenic
ACTTAAAATAGAGCAAAGAC+CGG 0.595654 4_2:+65997897 Msa0616230:three_prime_UTR
CAACCCTCTGATGATGATGA+TGG 0.596745 4_2:-65996750 None:intergenic
CACAACATTCCATGCAAGGA+GGG 0.597092 4_2:+65997844 Msa0616230:three_prime_UTR
ACTGTTCTGTGTAGTTACAC+TGG 0.597328 4_2:-65996701 None:intergenic
TCCTGATGATCCATGAGTGA+GGG 0.599861 4_2:-65997695 None:intergenic
GACACAGATGCCCCAGCTCG+AGG 0.604247 4_2:+65997652 Msa0616230:CDS
CCATCACAACATTCCATGCA+AGG 0.608498 4_2:+65997840 Msa0616230:three_prime_UTR
ACCGGACGATCTTCATCCGG+TGG 0.608873 4_2:-65996814 None:intergenic
GATTGTAGAGGAGGGAGATG+TGG 0.615192 4_2:-65997748 None:intergenic
GTGATATTCTGGGATTGTAG+AGG 0.620846 4_2:-65997760 None:intergenic
ACCACCATCATCATCATCAG+AGG 0.627709 4_2:+65996746 Msa0616230:CDS
GCTCCATAGGATGTTCAACT+GGG 0.634698 4_2:-65996792 None:intergenic
CCACCATCATCATCATCAGA+GGG 0.645144 4_2:+65996747 Msa0616230:CDS
CTCCTGATGATCCATGAGTG+AGG 0.684933 4_2:-65997696 None:intergenic
TCACAACATTCCATGCAAGG+AGG 0.689773 4_2:+65997843 Msa0616230:three_prime_UTR
CCCTCTGATGATGATGATGG+TGG 0.719053 4_2:-65996747 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAATAATAAAACTAAA+AGG + chr4_2:65997117-65997136 Msa0616230:intron 10.0%
!! ATACTAATAATAAAACTAAA+AGG + chr4_2:65997117-65997136 Msa0616230:intron 10.0%
!! TTTATAGTTATATATGCTAA+TGG + chr4_2:65996415-65996434 Msa0616230:five_prime_UTR 15.0%
!! TTATAGTTATATATGCTAAT+GGG + chr4_2:65996416-65996435 Msa0616230:five_prime_UTR 15.0%
!!! CAACTAATTTTGTATATTTT+AGG + chr4_2:65996642-65996661 Msa0616230:intron 15.0%
!! TTTATAGTTATATATGCTAA+TGG + chr4_2:65996415-65996434 Msa0616230:five_prime_UTR 15.0%
!! TTATAGTTATATATGCTAAT+GGG + chr4_2:65996416-65996435 Msa0616230:five_prime_UTR 15.0%
!!! CAACTAATTTTGTATATTTT+AGG + chr4_2:65996642-65996661 Msa0616230:intron 15.0%
!! AATTGGAGAATTTATTGATA+CGG + chr4_2:65996517-65996536 Msa0616230:five_prime_UTR 20.0%
!!! TTGTATATTTTAGGAAGAAA+AGG + chr4_2:65996651-65996670 Msa0616230:intron 20.0%
!! CAAAATGTCTAATGAATATT+TGG - chr4_2:65997236-65997255 None:intergenic 20.0%
!!! CAAATATTCATTAGACATTT+TGG + chr4_2:65997234-65997253 Msa0616230:intron 20.0%
!! AACAATTATTGACAAATGTT+TGG + chr4_2:65997371-65997390 Msa0616230:intron 20.0%
!! ATAAAGCATGAAGATAAAAA+TGG - chr4_2:65997432-65997451 None:intergenic 20.0%
!!! TTATTTCACTAAAACTTGTT+TGG + chr4_2:65997448-65997467 Msa0616230:intron 20.0%
!!! TGTTGTTATGTTAGATTTTA+AGG + chr4_2:65998096-65998115 Msa0616230:three_prime_UTR 20.0%
!!! AAAATGAATTTTAAGGTCTT+GGG - chr4_2:65998128-65998147 None:intergenic 20.0%
!! AATTGGAGAATTTATTGATA+CGG + chr4_2:65996517-65996536 Msa0616230:five_prime_UTR 20.0%
!!! TTGTATATTTTAGGAAGAAA+AGG + chr4_2:65996651-65996670 Msa0616230:intron 20.0%
!! CAAAATGTCTAATGAATATT+TGG - chr4_2:65997236-65997255 None:intergenic 20.0%
!!! CAAATATTCATTAGACATTT+TGG + chr4_2:65997234-65997253 Msa0616230:intron 20.0%
!! AACAATTATTGACAAATGTT+TGG + chr4_2:65997371-65997390 Msa0616230:intron 20.0%
!! ATAAAGCATGAAGATAAAAA+TGG - chr4_2:65997432-65997451 None:intergenic 20.0%
!!! TTATTTCACTAAAACTTGTT+TGG + chr4_2:65997448-65997467 Msa0616230:intron 20.0%
!!! TGTTGTTATGTTAGATTTTA+AGG + chr4_2:65998096-65998115 Msa0616230:three_prime_UTR 20.0%
!!! AAAATGAATTTTAAGGTCTT+GGG - chr4_2:65998128-65998147 None:intergenic 20.0%
! GTAAGATTTATGTTTCACTT+AGG - chr4_2:65996349-65996368 None:intergenic 25.0%
! GACACATTATTATATGAACA+CGG - chr4_2:65997034-65997053 None:intergenic 25.0%
! TATTTGGATAGATATATCAC+AGG - chr4_2:65997220-65997239 None:intergenic 25.0%
! AAGGAAATCAATATAGTTCT+AGG - chr4_2:65997330-65997349 None:intergenic 25.0%
!!! TAGAACTATATTGATTTCCT+TGG + chr4_2:65997329-65997348 Msa0616230:intron 25.0%
!! AAAACTTGTTTGGATTCTTT+AGG + chr4_2:65997458-65997477 Msa0616230:intron 25.0%
! TTGGAAAATAGTGATATTCT+GGG - chr4_2:65997773-65997792 None:intergenic 25.0%
! TTAGATAGACAAATGTTTGT+AGG + chr4_2:65998071-65998090 Msa0616230:three_prime_UTR 25.0%
!!! CAAAATGAATTTTAAGGTCT+TGG - chr4_2:65998129-65998148 None:intergenic 25.0%
!! GGAATGCAAAATGAATTTTA+AGG - chr4_2:65998135-65998154 None:intergenic 25.0%
! GTAAGATTTATGTTTCACTT+AGG - chr4_2:65996349-65996368 None:intergenic 25.0%
! GACACATTATTATATGAACA+CGG - chr4_2:65997034-65997053 None:intergenic 25.0%
! TATTTGGATAGATATATCAC+AGG - chr4_2:65997220-65997239 None:intergenic 25.0%
! AAGGAAATCAATATAGTTCT+AGG - chr4_2:65997330-65997349 None:intergenic 25.0%
!!! TAGAACTATATTGATTTCCT+TGG + chr4_2:65997329-65997348 Msa0616230:intron 25.0%
!! AAAACTTGTTTGGATTCTTT+AGG + chr4_2:65997458-65997477 Msa0616230:intron 25.0%
! TTGGAAAATAGTGATATTCT+GGG - chr4_2:65997773-65997792 None:intergenic 25.0%
! TTAGATAGACAAATGTTTGT+AGG + chr4_2:65998071-65998090 Msa0616230:three_prime_UTR 25.0%
!!! CAAAATGAATTTTAAGGTCT+TGG - chr4_2:65998129-65998148 None:intergenic 25.0%
!! GGAATGCAAAATGAATTTTA+AGG - chr4_2:65998135-65998154 None:intergenic 25.0%
AAAAAGGAGTAAGAGAGAAT+GGG - chr4_2:65996287-65996306 None:intergenic 30.0%
TAAAAAGGAGTAAGAGAGAA+TGG - chr4_2:65996288-65996307 None:intergenic 30.0%
TTTCTTGTCCATTGATCAAA+AGG + chr4_2:65996492-65996511 Msa0616230:five_prime_UTR 30.0%
TTCTTGTCCATTGATCAAAA+GGG + chr4_2:65996493-65996512 Msa0616230:five_prime_UTR 30.0%
!! TATTTTAGGAAGAAAAGGAG+AGG + chr4_2:65996656-65996675 Msa0616230:intron 30.0%
!! ATTTTAGGAAGAAAAGGAGA+GGG + chr4_2:65996657-65996676 Msa0616230:intron 30.0%
GTTACCTACTTATCTTAAGA+TGG + chr4_2:65996896-65996915 Msa0616230:intron 30.0%
TTTGCCATCTTAAGATAAGT+AGG - chr4_2:65996903-65996922 None:intergenic 30.0%
! ATAATGTGTCACTAAACACT+AGG + chr4_2:65997044-65997063 Msa0616230:intron 30.0%
! GACTAGAATCAGCTTTTAAA+TGG + chr4_2:65997139-65997158 Msa0616230:intron 30.0%
! TTCATTAGACATTTTGGACT+AGG + chr4_2:65997240-65997259 Msa0616230:intron 30.0%
! TCATTAGACATTTTGGACTA+GGG + chr4_2:65997241-65997260 Msa0616230:intron 30.0%
AATGTTTGGCAACAATTTAC+CGG + chr4_2:65997385-65997404 Msa0616230:intron 30.0%
CTTGGAAAATAGTGATATTC+TGG - chr4_2:65997774-65997793 None:intergenic 30.0%
ACTTAAAATAGAGCAAAGAC+CGG + chr4_2:65997897-65997916 Msa0616230:three_prime_UTR 30.0%
ACGACATATGATGAAAACTT+GGG - chr4_2:65997944-65997963 None:intergenic 30.0%
AACGACATATGATGAAAACT+TGG - chr4_2:65997945-65997964 None:intergenic 30.0%
AAAAAGGAGTAAGAGAGAAT+GGG - chr4_2:65996287-65996306 None:intergenic 30.0%
TAAAAAGGAGTAAGAGAGAA+TGG - chr4_2:65996288-65996307 None:intergenic 30.0%
TTTCTTGTCCATTGATCAAA+AGG + chr4_2:65996492-65996511 Msa0616230:five_prime_UTR 30.0%
TTCTTGTCCATTGATCAAAA+GGG + chr4_2:65996493-65996512 Msa0616230:five_prime_UTR 30.0%
!! TATTTTAGGAAGAAAAGGAG+AGG + chr4_2:65996656-65996675 Msa0616230:intron 30.0%
!! ATTTTAGGAAGAAAAGGAGA+GGG + chr4_2:65996657-65996676 Msa0616230:intron 30.0%
GTTACCTACTTATCTTAAGA+TGG + chr4_2:65996896-65996915 Msa0616230:intron 30.0%
TTTGCCATCTTAAGATAAGT+AGG - chr4_2:65996903-65996922 None:intergenic 30.0%
! ATAATGTGTCACTAAACACT+AGG + chr4_2:65997044-65997063 Msa0616230:intron 30.0%
! GACTAGAATCAGCTTTTAAA+TGG + chr4_2:65997139-65997158 Msa0616230:intron 30.0%
! TTCATTAGACATTTTGGACT+AGG + chr4_2:65997240-65997259 Msa0616230:intron 30.0%
! TCATTAGACATTTTGGACTA+GGG + chr4_2:65997241-65997260 Msa0616230:intron 30.0%
AATGTTTGGCAACAATTTAC+CGG + chr4_2:65997385-65997404 Msa0616230:intron 30.0%
CTTGGAAAATAGTGATATTC+TGG - chr4_2:65997774-65997793 None:intergenic 30.0%
ACTTAAAATAGAGCAAAGAC+CGG + chr4_2:65997897-65997916 Msa0616230:three_prime_UTR 30.0%
ACGACATATGATGAAAACTT+GGG - chr4_2:65997944-65997963 None:intergenic 30.0%
AACGACATATGATGAAAACT+TGG - chr4_2:65997945-65997964 None:intergenic 30.0%
AAAGGAGAGTGAGCATAAAA+AGG - chr4_2:65996303-65996322 None:intergenic 35.0%
GAAAGAGGAGAAGAAATGAA+AGG - chr4_2:65996321-65996340 None:intergenic 35.0%
TTCACTTAGGAAAGAGAAAG+AGG - chr4_2:65996336-65996355 None:intergenic 35.0%
AAAGAAGCTGAGAAAAATGC+TGG - chr4_2:65996385-65996404 None:intergenic 35.0%
! CATTTTTCTCAGCTTCTTTC+TGG + chr4_2:65996386-65996405 Msa0616230:five_prime_UTR 35.0%
CAGTCATAGAGTTAGTTAAG+AGG - chr4_2:65996470-65996489 None:intergenic 35.0%
! CCAATTACCCTTTTGATCAA+TGG - chr4_2:65996503-65996522 None:intergenic 35.0%
CCATTGATCAAAAGGGTAAT+TGG + chr4_2:65996500-65996519 Msa0616230:five_prime_UTR 35.0%
! AGCTGCTGCTATATATGTTT+TGG - chr4_2:65996591-65996610 None:intergenic 35.0%
TACACAGAACAGTATCATCA+TGG + chr4_2:65996711-65996730 Msa0616230:exon 35.0%
ACACTAATGACTGAAGATTC+AGG - chr4_2:65996853-65996872 None:intergenic 35.0%
ATTATATGAACACGGCTACA+AGG - chr4_2:65997026-65997045 None:intergenic 35.0%
ACCAATTTGGAAATTTCAGG+TGG + chr4_2:65997074-65997093 Msa0616230:intron 35.0%
ACCACCTGAAATTTCCAAAT+TGG - chr4_2:65997078-65997097 None:intergenic 35.0%
!! CATTAGACATTTTGGACTAG+GGG + chr4_2:65997242-65997261 Msa0616230:intron 35.0%
ACATTTAACAACTGCTACCA+AGG - chr4_2:65997349-65997368 None:intergenic 35.0%
! CATGACTTTTACAGGATGAA+AGG + chr4_2:65997551-65997570 Msa0616230:intron 35.0%
ATGAAAGGATGCATGAAAAG+AGG + chr4_2:65997566-65997585 Msa0616230:CDS 35.0%
AAAGGAGAGTGAGCATAAAA+AGG - chr4_2:65996303-65996322 None:intergenic 35.0%
GAAAGAGGAGAAGAAATGAA+AGG - chr4_2:65996321-65996340 None:intergenic 35.0%
TTCACTTAGGAAAGAGAAAG+AGG - chr4_2:65996336-65996355 None:intergenic 35.0%
AAAGAAGCTGAGAAAAATGC+TGG - chr4_2:65996385-65996404 None:intergenic 35.0%
! CATTTTTCTCAGCTTCTTTC+TGG + chr4_2:65996386-65996405 Msa0616230:five_prime_UTR 35.0%
CAGTCATAGAGTTAGTTAAG+AGG - chr4_2:65996470-65996489 None:intergenic 35.0%
! CCAATTACCCTTTTGATCAA+TGG - chr4_2:65996503-65996522 None:intergenic 35.0%
CCATTGATCAAAAGGGTAAT+TGG + chr4_2:65996500-65996519 Msa0616230:five_prime_UTR 35.0%
! AGCTGCTGCTATATATGTTT+TGG - chr4_2:65996591-65996610 None:intergenic 35.0%
TACACAGAACAGTATCATCA+TGG + chr4_2:65996711-65996730 Msa0616230:exon 35.0%
ACACTAATGACTGAAGATTC+AGG - chr4_2:65996853-65996872 None:intergenic 35.0%
ATTATATGAACACGGCTACA+AGG - chr4_2:65997026-65997045 None:intergenic 35.0%
ACCAATTTGGAAATTTCAGG+TGG + chr4_2:65997074-65997093 Msa0616230:intron 35.0%
ACCACCTGAAATTTCCAAAT+TGG - chr4_2:65997078-65997097 None:intergenic 35.0%
!! CATTAGACATTTTGGACTAG+GGG + chr4_2:65997242-65997261 Msa0616230:intron 35.0%
ACATTTAACAACTGCTACCA+AGG - chr4_2:65997349-65997368 None:intergenic 35.0%
! CATGACTTTTACAGGATGAA+AGG + chr4_2:65997551-65997570 Msa0616230:intron 35.0%
ATGAAAGGATGCATGAAAAG+AGG + chr4_2:65997566-65997585 Msa0616230:CDS 35.0%
ACTGTTCTGTGTAGTTACAC+TGG - chr4_2:65996704-65996723 None:intergenic 40.0%
TTTCCCAGTTGAACATCCTA+TGG + chr4_2:65996789-65996808 Msa0616230:CDS 40.0%
ATGACTGAAGATTCAGGCAT+TGG - chr4_2:65996847-65996866 None:intergenic 40.0%
TGTCACTAAACACTAGGCTA+AGG + chr4_2:65997050-65997069 Msa0616230:intron 40.0%
GTCACTAAACACTAGGCTAA+GGG + chr4_2:65997051-65997070 Msa0616230:intron 40.0%
GGGACCAATTTGGAAATTTC+AGG + chr4_2:65997071-65997090 Msa0616230:intron 40.0%
CTAGAAAGAGAAGCTGCAAA+GGG - chr4_2:65997272-65997291 None:intergenic 40.0%
CAACAATTTACCGGTCATTC+TGG + chr4_2:65997394-65997413 Msa0616230:intron 40.0%
TCAGTAGTTTCCAGAATGAC+CGG - chr4_2:65997407-65997426 None:intergenic 40.0%
!! TGCAGTTCATTCTGAAGTTC+AGG + chr4_2:65997507-65997526 Msa0616230:intron 40.0%
!! GCAGTTCATTCTGAAGTTCA+GGG + chr4_2:65997508-65997527 Msa0616230:intron 40.0%
! CTGACAAGCATGACTTTTAC+AGG + chr4_2:65997543-65997562 Msa0616230:intron 40.0%
! AGAGGAACACAGAAAGCATA+AGG + chr4_2:65997584-65997603 Msa0616230:CDS 40.0%
! ACAGAAAGCATAAGGAAGAG+AGG + chr4_2:65997592-65997611 Msa0616230:CDS 40.0%
AGATGTGGCATTCTCATCAA+TGG - chr4_2:65997736-65997755 None:intergenic 40.0%
!! TATTCTGGGATTGTAGAGGA+GGG - chr4_2:65997759-65997778 None:intergenic 40.0%
!! ATATTCTGGGATTGTAGAGG+AGG - chr4_2:65997760-65997779 None:intergenic 40.0%
!! GTGATATTCTGGGATTGTAG+AGG - chr4_2:65997763-65997782 None:intergenic 40.0%
CTTGCATGGAATGTTGTGAT+GGG - chr4_2:65997842-65997861 None:intergenic 40.0%
AAAATGAATCCCTCCTTGCA+TGG - chr4_2:65997856-65997875 None:intergenic 40.0%
ACTGTTCTGTGTAGTTACAC+TGG - chr4_2:65996704-65996723 None:intergenic 40.0%
TTTCCCAGTTGAACATCCTA+TGG + chr4_2:65996789-65996808 Msa0616230:CDS 40.0%
ATGACTGAAGATTCAGGCAT+TGG - chr4_2:65996847-65996866 None:intergenic 40.0%
TGTCACTAAACACTAGGCTA+AGG + chr4_2:65997050-65997069 Msa0616230:intron 40.0%
GTCACTAAACACTAGGCTAA+GGG + chr4_2:65997051-65997070 Msa0616230:intron 40.0%
GGGACCAATTTGGAAATTTC+AGG + chr4_2:65997071-65997090 Msa0616230:intron 40.0%
CTAGAAAGAGAAGCTGCAAA+GGG - chr4_2:65997272-65997291 None:intergenic 40.0%
CAACAATTTACCGGTCATTC+TGG + chr4_2:65997394-65997413 Msa0616230:intron 40.0%
TCAGTAGTTTCCAGAATGAC+CGG - chr4_2:65997407-65997426 None:intergenic 40.0%
!! TGCAGTTCATTCTGAAGTTC+AGG + chr4_2:65997507-65997526 Msa0616230:intron 40.0%
!! GCAGTTCATTCTGAAGTTCA+GGG + chr4_2:65997508-65997527 Msa0616230:intron 40.0%
! CTGACAAGCATGACTTTTAC+AGG + chr4_2:65997543-65997562 Msa0616230:intron 40.0%
! AGAGGAACACAGAAAGCATA+AGG + chr4_2:65997584-65997603 Msa0616230:CDS 40.0%
! ACAGAAAGCATAAGGAAGAG+AGG + chr4_2:65997592-65997611 Msa0616230:CDS 40.0%
AGATGTGGCATTCTCATCAA+TGG - chr4_2:65997736-65997755 None:intergenic 40.0%
!! TATTCTGGGATTGTAGAGGA+GGG - chr4_2:65997759-65997778 None:intergenic 40.0%
!! ATATTCTGGGATTGTAGAGG+AGG - chr4_2:65997760-65997779 None:intergenic 40.0%
!! GTGATATTCTGGGATTGTAG+AGG - chr4_2:65997763-65997782 None:intergenic 40.0%
CTTGCATGGAATGTTGTGAT+GGG - chr4_2:65997842-65997861 None:intergenic 40.0%
AAAATGAATCCCTCCTTGCA+TGG - chr4_2:65997856-65997875 None:intergenic 40.0%
! GCTAATGGGATTTTCATGCG+AGG + chr4_2:65996430-65996449 Msa0616230:five_prime_UTR 45.0%
ACCACCATCATCATCATCAG+AGG + chr4_2:65996746-65996765 Msa0616230:CDS 45.0%
CCACCATCATCATCATCAGA+GGG + chr4_2:65996747-65996766 Msa0616230:CDS 45.0%
! CAACCCTCTGATGATGATGA+TGG - chr4_2:65996753-65996772 None:intergenic 45.0%
GCTCCATAGGATGTTCAACT+GGG - chr4_2:65996795-65996814 None:intergenic 45.0%
!! TCAGGCATTGGACATTTCAC+CGG - chr4_2:65996835-65996854 None:intergenic 45.0%
ATGGCAAAGCATGCTTTGCA+TGG + chr4_2:65996915-65996934 Msa0616230:intron 45.0%
ACTAGGCTAAGGGACCAATT+TGG + chr4_2:65997061-65997080 Msa0616230:intron 45.0%
GCTAGAAAGAGAAGCTGCAA+AGG - chr4_2:65997273-65997292 None:intergenic 45.0%
TCCTGATGATCCATGAGTGA+GGG - chr4_2:65997698-65997717 None:intergenic 45.0%
TTTCCAAGTGCTTCAGCAGT+TGG + chr4_2:65997786-65997805 Msa0616230:CDS 45.0%
CCTTGCATGGAATGTTGTGA+TGG - chr4_2:65997843-65997862 None:intergenic 45.0%
CCATCACAACATTCCATGCA+AGG + chr4_2:65997840-65997859 Msa0616230:three_prime_UTR 45.0%
TCACAACATTCCATGCAAGG+AGG + chr4_2:65997843-65997862 Msa0616230:three_prime_UTR 45.0%
CACAACATTCCATGCAAGGA+GGG + chr4_2:65997844-65997863 Msa0616230:three_prime_UTR 45.0%
TCTTCATGCACCAATGCTTC+CGG - chr4_2:65997919-65997938 None:intergenic 45.0%
! GCTAATGGGATTTTCATGCG+AGG + chr4_2:65996430-65996449 Msa0616230:five_prime_UTR 45.0%
ACCACCATCATCATCATCAG+AGG + chr4_2:65996746-65996765 Msa0616230:CDS 45.0%
CCACCATCATCATCATCAGA+GGG + chr4_2:65996747-65996766 Msa0616230:CDS 45.0%
! CAACCCTCTGATGATGATGA+TGG - chr4_2:65996753-65996772 None:intergenic 45.0%
GCTCCATAGGATGTTCAACT+GGG - chr4_2:65996795-65996814 None:intergenic 45.0%
!! TCAGGCATTGGACATTTCAC+CGG - chr4_2:65996835-65996854 None:intergenic 45.0%
ATGGCAAAGCATGCTTTGCA+TGG + chr4_2:65996915-65996934 Msa0616230:intron 45.0%
ACTAGGCTAAGGGACCAATT+TGG + chr4_2:65997061-65997080 Msa0616230:intron 45.0%
GCTAGAAAGAGAAGCTGCAA+AGG - chr4_2:65997273-65997292 None:intergenic 45.0%
TCCTGATGATCCATGAGTGA+GGG - chr4_2:65997698-65997717 None:intergenic 45.0%
TTTCCAAGTGCTTCAGCAGT+TGG + chr4_2:65997786-65997805 Msa0616230:CDS 45.0%
CCTTGCATGGAATGTTGTGA+TGG - chr4_2:65997843-65997862 None:intergenic 45.0%
CCATCACAACATTCCATGCA+AGG + chr4_2:65997840-65997859 Msa0616230:three_prime_UTR 45.0%
TCACAACATTCCATGCAAGG+AGG + chr4_2:65997843-65997862 Msa0616230:three_prime_UTR 45.0%
CACAACATTCCATGCAAGGA+GGG + chr4_2:65997844-65997863 Msa0616230:three_prime_UTR 45.0%
TCTTCATGCACCAATGCTTC+CGG - chr4_2:65997919-65997938 None:intergenic 45.0%
!! CCCTCTGATGATGATGATGG+TGG - chr4_2:65996750-65996769 None:intergenic 50.0%
GGCTCCATAGGATGTTCAAC+TGG - chr4_2:65996796-65996815 None:intergenic 50.0%
TGAACATCCTATGGAGCCAC+CGG + chr4_2:65996798-65996817 Msa0616230:CDS 50.0%
TTCACCGGACGATCTTCATC+CGG - chr4_2:65996820-65996839 None:intergenic 50.0%
AGGAAGAGAGGTGAGATGTC+TGG + chr4_2:65997604-65997623 Msa0616230:CDS 50.0%
GGAAGAGAGGTGAGATGTCT+GGG + chr4_2:65997605-65997624 Msa0616230:CDS 50.0%
TGGACAAAGAACAGCTGGCA+TGG + chr4_2:65997630-65997649 Msa0616230:CDS 50.0%
ACCCTCACTCATGGATCATC+AGG + chr4_2:65997694-65997713 Msa0616230:CDS 50.0%
CTCCTGATGATCCATGAGTG+AGG - chr4_2:65997699-65997718 None:intergenic 50.0%
GATTGTAGAGGAGGGAGATG+TGG - chr4_2:65997751-65997770 None:intergenic 50.0%
! TGTCCAACTGCTGAAGCACT+TGG - chr4_2:65997792-65997811 None:intergenic 50.0%
! AGAGCAAAGACCGGAAGCAT+TGG + chr4_2:65997906-65997925 Msa0616230:three_prime_UTR 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_2:65996242-65996261 None:intergenic 50.0%
!! CCCTCTGATGATGATGATGG+TGG - chr4_2:65996750-65996769 None:intergenic 50.0%
GGCTCCATAGGATGTTCAAC+TGG - chr4_2:65996796-65996815 None:intergenic 50.0%
TGAACATCCTATGGAGCCAC+CGG + chr4_2:65996798-65996817 Msa0616230:CDS 50.0%
TTCACCGGACGATCTTCATC+CGG - chr4_2:65996820-65996839 None:intergenic 50.0%
AGGAAGAGAGGTGAGATGTC+TGG + chr4_2:65997604-65997623 Msa0616230:CDS 50.0%
GGAAGAGAGGTGAGATGTCT+GGG + chr4_2:65997605-65997624 Msa0616230:CDS 50.0%
TGGACAAAGAACAGCTGGCA+TGG + chr4_2:65997630-65997649 Msa0616230:CDS 50.0%
ACCCTCACTCATGGATCATC+AGG + chr4_2:65997694-65997713 Msa0616230:CDS 50.0%
CTCCTGATGATCCATGAGTG+AGG - chr4_2:65997699-65997718 None:intergenic 50.0%
GATTGTAGAGGAGGGAGATG+TGG - chr4_2:65997751-65997770 None:intergenic 50.0%
! TGTCCAACTGCTGAAGCACT+TGG - chr4_2:65997792-65997811 None:intergenic 50.0%
! AGAGCAAAGACCGGAAGCAT+TGG + chr4_2:65997906-65997925 Msa0616230:three_prime_UTR 50.0%
TCTTCATCCGGTGGCTCCAT+AGG - chr4_2:65996808-65996827 None:intergenic 55.0%
AGAGGTGAGATGTCTGGGTC+TGG + chr4_2:65997610-65997629 Msa0616230:CDS 55.0%
GGGTCTGGACAAAGAACAGC+TGG + chr4_2:65997625-65997644 Msa0616230:CDS 55.0%
TCTTCATCCGGTGGCTCCAT+AGG - chr4_2:65996808-65996827 None:intergenic 55.0%
AGAGGTGAGATGTCTGGGTC+TGG + chr4_2:65997610-65997629 Msa0616230:CDS 55.0%
GGGTCTGGACAAAGAACAGC+TGG + chr4_2:65997625-65997644 Msa0616230:CDS 55.0%
GCCACCGGATGAAGATCGTC+CGG + chr4_2:65996813-65996832 Msa0616230:CDS 60.0%
ACCGGACGATCTTCATCCGG+TGG - chr4_2:65996817-65996836 None:intergenic 60.0%
CTTTCGCACTCCTCGAGCTG+GGG - chr4_2:65997665-65997684 None:intergenic 60.0%
GCTTTCGCACTCCTCGAGCT+GGG - chr4_2:65997666-65997685 None:intergenic 60.0%
! CAGCTCGAGGAGTGCGAAAG+CGG + chr4_2:65997665-65997684 Msa0616230:CDS 60.0%
CGGCATCACACCCTCACTCA+TGG + chr4_2:65997685-65997704 Msa0616230:CDS 60.0%
GCCACCGGATGAAGATCGTC+CGG + chr4_2:65996813-65996832 Msa0616230:CDS 60.0%
ACCGGACGATCTTCATCCGG+TGG - chr4_2:65996817-65996836 None:intergenic 60.0%
CTTTCGCACTCCTCGAGCTG+GGG - chr4_2:65997665-65997684 None:intergenic 60.0%
GCTTTCGCACTCCTCGAGCT+GGG - chr4_2:65997666-65997685 None:intergenic 60.0%
! CAGCTCGAGGAGTGCGAAAG+CGG + chr4_2:65997665-65997684 Msa0616230:CDS 60.0%
CGGCATCACACCCTCACTCA+TGG + chr4_2:65997685-65997704 Msa0616230:CDS 60.0%
GACACAGATGCCCCAGCTCG+AGG + chr4_2:65997652-65997671 Msa0616230:CDS 65.0%
CGCTTTCGCACTCCTCGAGC+TGG - chr4_2:65997667-65997686 None:intergenic 65.0%
GACACAGATGCCCCAGCTCG+AGG + chr4_2:65997652-65997671 Msa0616230:CDS 65.0%
CGCTTTCGCACTCCTCGAGC+TGG - chr4_2:65997667-65997686 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65996242 65998172 65996242 ID=Msa0616230;Name=Msa0616230
chr4_2 mRNA 65996242 65998172 65996242 ID=Msa0616230-mRNA-1;Parent=Msa0616230;Name=Msa0616230-mRNA-1;_AED=0.16;_eAED=0.16;_QI=363|1|1|1|0.5|0.33|3|347|133
chr4_2 exon 65996242 65996538 65996242 ID=Msa0616230-mRNA-1:exon:18748;Parent=Msa0616230-mRNA-1
chr4_2 exon 65996664 65996870 65996664 ID=Msa0616230-mRNA-1:exon:18749;Parent=Msa0616230-mRNA-1
chr4_2 exon 65997565 65998172 65997565 ID=Msa0616230-mRNA-1:exon:18750;Parent=Msa0616230-mRNA-1
chr4_2 five_prime_UTR 65996242 65996538 65996242 ID=Msa0616230-mRNA-1:five_prime_utr;Parent=Msa0616230-mRNA-1
chr4_2 five_prime_UTR 65996664 65996729 65996664 ID=Msa0616230-mRNA-1:five_prime_utr;Parent=Msa0616230-mRNA-1
chr4_2 CDS 65996730 65996870 65996730 ID=Msa0616230-mRNA-1:cds;Parent=Msa0616230-mRNA-1
chr4_2 CDS 65997565 65997825 65997565 ID=Msa0616230-mRNA-1:cds;Parent=Msa0616230-mRNA-1
chr4_2 three_prime_UTR 65997826 65998172 65997826 ID=Msa0616230-mRNA-1:three_prime_utr;Parent=Msa0616230-mRNA-1
Gene Sequence

>Msa0616230

ATGGAAGTGTATCATCACCACCATCATCATCATCAGAGGGTTGATAACAACACAGATTTTTTCCCAGTTGAACATCCTATGGAGCCACCGGATGAAGATCGTCCGGTGAAATGTCCAATGCCTGAATCTTCAGTCATTAGTGATGAAAGGATGCATGAAAAGAGGAACACAGAAAGCATAAGGAAGAGAGGTGAGATGTCTGGGTCTGGACAAAGAACAGCTGGCATGGACACAGATGCCCCAGCTCGAGGAGTGCGAAAGCGGCATCACACCCTCACTCATGGATCATCAGGAGACATTGTGATGACTCCATTGATGAGAATGCCACATCTCCCTCCTCTACAATCCCAGAATATCACTATTTTCCAAGTGCTTCAGCAGTTGGACAAGTTTGAGTCTTAA

Protein sequence

>Msa0616230

MEVYHHHHHHHQRVDNNTDFFPVEHPMEPPDEDRPVKCPMPESSVISDERMHEKRNTESIRKRGEMSGSGQRTAGMDTDAPARGVRKRHHTLTHGSSGDIVMTPLMRMPHLPPLQSQNITIFQVLQQLDKFES*