AlfalfaGEDB | Msa0699560

M. sativa cultivar zhongmu-4 / Msa0699560

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699560	XP_039684437.1	98.496	133	0	1	1	133	34	164	7.52e-90	268

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699560	A0A396GU48	98.496	133	0	1	1	133	34	164	3.59e-90	268

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0699560	0.828536	8.513768e-55	-8.615850e-47
Msa0009780	Msa0699560	0.808879	2.492730e-50	-8.615850e-47
Msa0050530	Msa0699560	0.837926	3.896313e-57	-8.615850e-47
Msa0089540	Msa0699560	0.802512	5.415758e-49	-8.615850e-47
Msa0100600	Msa0699560	0.829581	4.752504e-55	-8.615850e-47
Msa0100890	Msa0699560	0.842479	2.522317e-58	-8.615850e-47
Msa0104570	Msa0699560	0.800943	1.136907e-48	-8.615850e-47
Msa0114600	Msa0699560	0.813096	3.042369e-51	-8.615850e-47
Msa0616230	Msa0699560	0.991339	3.982259e-187	-8.615850e-47
Msa0653160	Msa0699560	0.842291	2.828160e-58	-8.615850e-47
Msa0655710	Msa0699560	0.954714	1.586579e-112	-8.615850e-47
Msa0657210	Msa0699560	0.814970	1.174324e-51	-8.615850e-47
Msa0660260	Msa0699560	0.821099	4.832917e-53	-8.615850e-47
Msa0688620	Msa0699560	0.834970	2.201972e-56	-8.615850e-47
Msa0695560	Msa0699560	0.804463	2.134065e-49	-8.615850e-47
Msa0699560	Msa0701250	0.821687	3.536714e-53	-8.615850e-47
Msa0699560	Msa0706690	0.845314	4.386179e-59	-8.615850e-47
Msa0699560	Msa0749190	0.838379	2.977466e-57	-8.615850e-47
Msa0699560	Msa0750520	0.837556	4.846924e-57	-8.615850e-47
Msa0699560	Msa0831820	0.821067	4.917457e-53	-8.615850e-47
Msa0699560	Msa0876630	0.815473	9.080661e-52	-8.615850e-47
Msa0699560	Msa0929900	0.803760	2.988550e-49	-8.615850e-47
Msa0699560	Msa0970040	0.801025	1.093944e-48	-8.615850e-47
Msa0699560	Msa0978980	0.828365	9.363525e-55	-8.615850e-47
Msa0699560	Msa0999950	0.805692	1.180533e-49	-8.615850e-47
Msa0699560	Msa1004780	0.808879	2.492730e-50	-8.615850e-47
Msa0699560	Msa1033420	0.825922	3.598524e-54	-8.615850e-47
Msa0699560	Msa1071410	0.833936	4.004122e-56	-8.615850e-47
Msa0699560	Msa1073060	0.817325	3.497380e-52	-8.615850e-47
Msa0699560	Msa1085680	0.813507	2.471766e-51	-8.615850e-47
Msa0699560	Msa1136970	-0.807500	4.903609e-50	-8.615850e-47
Msa0699560	Msa1138800	0.804854	1.768845e-49	-8.615850e-47
Msa0699560	Msa1144990	0.837794	4.211403e-57	-8.615850e-47
Msa0699560	Msa1154630	0.814526	1.473192e-51	-8.615850e-47
Msa0699560	Msa1212700	0.818564	1.835445e-52	-8.615850e-47
Msa0699560	Msa1212920	0.832992	6.887274e-56	-8.615850e-47
Msa0699560	Msa1267930	0.821758	3.406169e-53	-8.615850e-47
Msa0699560	Msa1308860	0.829293	5.583855e-55	-8.615850e-47
Msa0699560	Msa1331650	0.820672	6.059628e-53	-8.615850e-47
Msa0699560	Msa1343460	0.852468	4.525375e-61	-8.615850e-47
Msa0699560	Msa1356450	0.805170	1.519148e-49	-8.615850e-47
Msa0699560	Msa1368170	0.834529	2.844153e-56	-8.615850e-47
Msa0699560	Msa1371270	0.844200	8.760520e-59	-8.615850e-47
Msa0699560	Msa1372030	0.821126	4.764975e-53	-8.615850e-47
Msa0699560	Msa1377140	0.826037	3.380266e-54	-8.615850e-47
Msa0699560	Msa1381800	0.834051	3.748096e-56	-8.615850e-47
Msa0699560	Msa1385570	0.813823	2.105930e-51	-8.615850e-47
Msa0699560	Msa1417930	0.816059	6.720678e-52	-8.615850e-47
Msa0699560	Msa1420830	0.820958	5.208277e-53	-8.615850e-47
Msa0699560	Msa1424370	0.801342	9.419990e-49	-8.615850e-47
Msa0699560	Msa1443210	0.816189	6.287942e-52	-8.615850e-47
Msa0699560	Msa1453030	0.826750	2.285754e-54	-8.615850e-47
Msa0135230	Msa0699560	0.807184	5.720352e-50	-8.615850e-47
Msa0173380	Msa0699560	0.811147	8.097723e-51	-8.615850e-47
Msa0191570	Msa0699560	0.828822	7.261797e-55	-8.615850e-47
Msa0214210	Msa0699560	0.810542	1.094365e-50	-8.615850e-47
Msa0233570	Msa0699560	0.822463	2.336745e-53	-8.615850e-47
Msa0237240	Msa0699560	0.816437	5.533183e-52	-8.615850e-47
Msa0388250	Msa0699560	0.812364	4.399302e-51	-8.615850e-47
Msa0274650	Msa0699560	0.832359	9.886411e-56	-8.615850e-47
Msa0312250	Msa0699560	0.813256	2.806121e-51	-8.615850e-47
Msa0541740	Msa0699560	0.826560	2.536982e-54	-8.615850e-47
Msa0557850	Msa0699560	0.808511	2.987212e-50	-8.615850e-47
Msa0562360	Msa0699560	0.946491	4.171772e-105	-8.615850e-47
Msa0571350	Msa0699560	0.839578	1.457077e-57	-8.615850e-47
Msa0576330	Msa0699560	0.816126	6.495048e-52	-8.615850e-47
Msa0577650	Msa0699560	0.805782	1.130376e-49	-8.615850e-47
Msa0577740	Msa0699560	0.810723	1.000077e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699560	MtrunA17_Chr8g0375551	98.496	133	0	1	1	133	34	164	6.92e-94	268
Msa0699560	MtrunA17_Chr5g0410051	36.842	76	47	1	14	89	50	124	7.58e-14	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699560	AT1G31940.1	46.939	49	26	0	18	66	53	101	3.22e-12	60.5
Msa0699560	AT2G35585.1	41.818	55	31	1	14	67	48	102	4.84e-11	57.4

Find 68 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGAAAATAGTGATATTC+TGG	0.208224	4_4:-70300049	None:intergenic
CGCTTTCGCACTCCTCGAGC+TGG	0.260475	4_4:-70299942	None:intergenic
CCATTGATCAAAAGGGTAAT+TGG	0.293161	4_4:+70298778	Msa0699560:five_prime_UTR
AAAGGAGAGTGAGCATAAAA+AGG	0.300414	4_4:-70298578	None:intergenic
TTTATAGTTATATATGCTAA+TGG	0.325570	4_4:+70298693	Msa0699560:five_prime_UTR
TTAGATAGACAAATGTTTGT+AGG	0.331683	4_4:+70300349	Msa0699560:three_prime_UTR
TCTTCATGCACCAATGCTTC+CGG	0.370311	4_4:-70300194	None:intergenic
TTTCTTGTCCATTGATCAAA+AGG	0.371603	4_4:+70298770	Msa0699560:five_prime_UTR
GGCTCCATAGGATGTTCAAC+TGG	0.393061	4_4:-70299071	None:intergenic
TTATAGTTATATATGCTAAT+GGG	0.403730	4_4:+70298694	Msa0699560:five_prime_UTR
AGGAAGAGAGGTGAGATGTC+TGG	0.414508	4_4:+70299882	Msa0699560:CDS
GCTTTCGCACTCCTCGAGCT+GGG	0.417036	4_4:-70299941	None:intergenic
TTTCCCAGTTGAACATCCTA+TGG	0.422933	4_4:+70299067	Msa0699560:CDS
TTAGCTCGGTTGGTGAGTTA+AGG	0.434129	4_4:-70300431	None:intergenic
ACACTAATGACTGAAGATTC+AGG	0.437311	4_4:-70299128	None:intergenic
ACCCTCACTCATGGATCATC+AGG	0.442814	4_4:+70299972	Msa0699560:CDS
TTGGAAAATAGTGATATTCT+GGG	0.444826	4_4:-70300048	None:intergenic
TTTCCAAGTGCTTCAGCAGT+TGG	0.454811	4_4:+70300064	Msa0699560:CDS
AGAGGTGAGATGTCTGGGTC+TGG	0.464003	4_4:+70299888	Msa0699560:CDS
TTCACTTAGGAAAGAGAAAG+AGG	0.470639	4_4:-70298611	None:intergenic
AATTGGAGAATTTATTGATA+CGG	0.474812	4_4:+70298795	Msa0699560:five_prime_UTR
AGAGGAACACAGAAAGCATA+AGG	0.478521	4_4:+70299862	Msa0699560:CDS
CAGTCATAGAGTTAGTTAAG+AGG	0.484753	4_4:-70298745	None:intergenic
AACGACATATGATGAAAACT+TGG	0.485073	4_4:-70300220	None:intergenic
GTAAGATTTATGTTTCACTT+AGG	0.493864	4_4:-70298624	None:intergenic
TGTCCAACTGCTGAAGCACT+TGG	0.496596	4_4:-70300067	None:intergenic
TCTTCATCCGGTGGCTCCAT+AGG	0.504589	4_4:-70299083	None:intergenic
GGGTCTGGACAAAGAACAGC+TGG	0.506189	4_4:+70299903	Msa0699560:CDS
AGATGTGGCATTCTCATCAA+TGG	0.507933	4_4:-70300011	None:intergenic
ATATTCTGGGATTGTAGAGG+AGG	0.508528	4_4:-70300035	None:intergenic
CGGCATCACACCCTCACTCA+TGG	0.508751	4_4:+70299963	Msa0699560:CDS
GAAAGAGGAGAAGAAATGAA+AGG	0.518038	4_4:-70298596	None:intergenic
CCTTGCATGGAATGTTGTGA+TGG	0.518542	4_4:-70300118	None:intergenic
GTCCACATAGTTAGCTCGGT+TGG	0.520181	4_4:-70300441	None:intergenic
ATGACTGAAGATTCAGGCAT+TGG	0.525006	4_4:-70299122	None:intergenic
GCCACCGGATGAAGATCGTC+CGG	0.527419	4_4:+70299091	Msa0699560:CDS
GGAAGAGAGGTGAGATGTCT+GGG	0.529996	4_4:+70299883	Msa0699560:CDS
AAAATGAATCCCTCCTTGCA+TGG	0.531998	4_4:-70300131	None:intergenic
AGAGCAAAGACCGGAAGCAT+TGG	0.532791	4_4:+70300184	Msa0699560:three_prime_UTR
CAGCTCGAGGAGTGCGAAAG+CGG	0.537056	4_4:+70299943	Msa0699560:CDS
TGGACAAAGAACAGCTGGCA+TGG	0.537925	4_4:+70299908	Msa0699560:CDS
ATGAAAGGATGCATGAAAAG+AGG	0.540753	4_4:+70299844	Msa0699560:CDS
TCAGGCATTGGACATTTCAC+CGG	0.545910	4_4:-70299110	None:intergenic
TATTCTGGGATTGTAGAGGA+GGG	0.548828	4_4:-70300034	None:intergenic
CTTGCATGGAATGTTGTGAT+GGG	0.556419	4_4:-70300117	None:intergenic
TTCACCGGACGATCTTCATC+CGG	0.561909	4_4:-70299095	None:intergenic
TACACAGAACAGTATCATCA+TGG	0.562804	4_4:+70298989	Msa0699560:exon
CTTTCGCACTCCTCGAGCTG+GGG	0.565176	4_4:-70299940	None:intergenic
TGAACATCCTATGGAGCCAC+CGG	0.581194	4_4:+70299076	Msa0699560:CDS
ACAGAAAGCATAAGGAAGAG+AGG	0.581626	4_4:+70299870	Msa0699560:CDS
TTCTTGTCCATTGATCAAAA+GGG	0.584575	4_4:+70298771	Msa0699560:five_prime_UTR
ACGACATATGATGAAAACTT+GGG	0.591479	4_4:-70300219	None:intergenic
ACTTAAAATAGAGCAAAGAC+CGG	0.595654	4_4:+70300175	Msa0699560:three_prime_UTR
CAACCCTCTGATGATGATGA+TGG	0.596745	4_4:-70299028	None:intergenic
CACAACATTCCATGCAAGGA+GGG	0.597092	4_4:+70300122	Msa0699560:three_prime_UTR
ACTGTTCTGTGTAGTTACAC+TGG	0.597328	4_4:-70298979	None:intergenic
TCCTGATGATCCATGAGTGA+GGG	0.599861	4_4:-70299973	None:intergenic
GACACAGATGCCCCAGCTCG+AGG	0.604247	4_4:+70299930	Msa0699560:CDS
CCATCACAACATTCCATGCA+AGG	0.608498	4_4:+70300118	Msa0699560:three_prime_UTR
ACCGGACGATCTTCATCCGG+TGG	0.608873	4_4:-70299092	None:intergenic
GATTGTAGAGGAGGGAGATG+TGG	0.615192	4_4:-70300026	None:intergenic
GTGATATTCTGGGATTGTAG+AGG	0.620846	4_4:-70300038	None:intergenic
ACCACCATCATCATCATCAG+AGG	0.627709	4_4:+70299024	Msa0699560:CDS
GCTCCATAGGATGTTCAACT+GGG	0.634698	4_4:-70299070	None:intergenic
CCACCATCATCATCATCAGA+GGG	0.645144	4_4:+70299025	Msa0699560:CDS
CTCCTGATGATCCATGAGTG+AGG	0.684933	4_4:-70299974	None:intergenic
TCACAACATTCCATGCAAGG+AGG	0.689773	4_4:+70300121	Msa0699560:three_prime_UTR
CCCTCTGATGATGATGATGG+TGG	0.719053	4_4:-70299025	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATACTAATAATAAAACTAAA+AGG	+	chr4_4:70299395-70299414	Msa0699560:intron	10.0%
!!	ATACTAATAATAAAACTAAA+AGG	+	chr4_4:70299395-70299414	Msa0699560:intron	10.0%
!!	TTTATAGTTATATATGCTAA+TGG	+	chr4_4:70298693-70298712	Msa0699560:five_prime_UTR	15.0%
!!	TTATAGTTATATATGCTAAT+GGG	+	chr4_4:70298694-70298713	Msa0699560:five_prime_UTR	15.0%
!!!	CAACTAATTTTGTATATTTT+AGG	+	chr4_4:70298920-70298939	Msa0699560:intron	15.0%
!!	TTTATAGTTATATATGCTAA+TGG	+	chr4_4:70298693-70298712	Msa0699560:five_prime_UTR	15.0%
!!	TTATAGTTATATATGCTAAT+GGG	+	chr4_4:70298694-70298713	Msa0699560:five_prime_UTR	15.0%
!!!	CAACTAATTTTGTATATTTT+AGG	+	chr4_4:70298920-70298939	Msa0699560:intron	15.0%
!!	AATTGGAGAATTTATTGATA+CGG	+	chr4_4:70298795-70298814	Msa0699560:five_prime_UTR	20.0%
!!!	TTGTATATTTTAGGAAGAAA+AGG	+	chr4_4:70298929-70298948	Msa0699560:intron	20.0%
!!	CAAAATGTCTAATGAATATT+TGG	-	chr4_4:70299514-70299533	None:intergenic	20.0%
!!!	CAAATATTCATTAGACATTT+TGG	+	chr4_4:70299512-70299531	Msa0699560:intron	20.0%
!!	AACAATTATTGACAAATGTT+TGG	+	chr4_4:70299649-70299668	Msa0699560:intron	20.0%
!!	ATAAAGCATGAAGATAAAAA+TGG	-	chr4_4:70299710-70299729	None:intergenic	20.0%
!!!	TTATTTCACTAAAACTTGTT+TGG	+	chr4_4:70299726-70299745	Msa0699560:intron	20.0%
!!!	TGTTGTTATGTTAGATTTTA+AGG	+	chr4_4:70300374-70300393	Msa0699560:three_prime_UTR	20.0%
!!!	AAAATGAATTTTAAGGTCTT+GGG	-	chr4_4:70300406-70300425	None:intergenic	20.0%
!!	AATTGGAGAATTTATTGATA+CGG	+	chr4_4:70298795-70298814	Msa0699560:five_prime_UTR	20.0%
!!!	TTGTATATTTTAGGAAGAAA+AGG	+	chr4_4:70298929-70298948	Msa0699560:intron	20.0%
!!	CAAAATGTCTAATGAATATT+TGG	-	chr4_4:70299514-70299533	None:intergenic	20.0%
!!!	CAAATATTCATTAGACATTT+TGG	+	chr4_4:70299512-70299531	Msa0699560:intron	20.0%
!!	AACAATTATTGACAAATGTT+TGG	+	chr4_4:70299649-70299668	Msa0699560:intron	20.0%
!!	ATAAAGCATGAAGATAAAAA+TGG	-	chr4_4:70299710-70299729	None:intergenic	20.0%
!!!	TTATTTCACTAAAACTTGTT+TGG	+	chr4_4:70299726-70299745	Msa0699560:intron	20.0%
!!!	TGTTGTTATGTTAGATTTTA+AGG	+	chr4_4:70300374-70300393	Msa0699560:three_prime_UTR	20.0%
!!!	AAAATGAATTTTAAGGTCTT+GGG	-	chr4_4:70300406-70300425	None:intergenic	20.0%
!	GTAAGATTTATGTTTCACTT+AGG	-	chr4_4:70298627-70298646	None:intergenic	25.0%
!	GACACATTATTATATGAACA+CGG	-	chr4_4:70299312-70299331	None:intergenic	25.0%
!	TATTTGGATAGATATATCAC+AGG	-	chr4_4:70299498-70299517	None:intergenic	25.0%
!	AAGGAAATCAATATAGTTCT+AGG	-	chr4_4:70299608-70299627	None:intergenic	25.0%
!!!	TAGAACTATATTGATTTCCT+TGG	+	chr4_4:70299607-70299626	Msa0699560:intron	25.0%
!!	AAAACTTGTTTGGATTCTTT+AGG	+	chr4_4:70299736-70299755	Msa0699560:intron	25.0%
!	TTGGAAAATAGTGATATTCT+GGG	-	chr4_4:70300051-70300070	None:intergenic	25.0%
!	TTAGATAGACAAATGTTTGT+AGG	+	chr4_4:70300349-70300368	Msa0699560:three_prime_UTR	25.0%
!!!	CAAAATGAATTTTAAGGTCT+TGG	-	chr4_4:70300407-70300426	None:intergenic	25.0%
!!	GGAATGCAAAATGAATTTTA+AGG	-	chr4_4:70300413-70300432	None:intergenic	25.0%
!	GTAAGATTTATGTTTCACTT+AGG	-	chr4_4:70298627-70298646	None:intergenic	25.0%
!	GACACATTATTATATGAACA+CGG	-	chr4_4:70299312-70299331	None:intergenic	25.0%
!	TATTTGGATAGATATATCAC+AGG	-	chr4_4:70299498-70299517	None:intergenic	25.0%
!	AAGGAAATCAATATAGTTCT+AGG	-	chr4_4:70299608-70299627	None:intergenic	25.0%
!!!	TAGAACTATATTGATTTCCT+TGG	+	chr4_4:70299607-70299626	Msa0699560:intron	25.0%
!!	AAAACTTGTTTGGATTCTTT+AGG	+	chr4_4:70299736-70299755	Msa0699560:intron	25.0%
!	TTGGAAAATAGTGATATTCT+GGG	-	chr4_4:70300051-70300070	None:intergenic	25.0%
!	TTAGATAGACAAATGTTTGT+AGG	+	chr4_4:70300349-70300368	Msa0699560:three_prime_UTR	25.0%
!!!	CAAAATGAATTTTAAGGTCT+TGG	-	chr4_4:70300407-70300426	None:intergenic	25.0%
!!	GGAATGCAAAATGAATTTTA+AGG	-	chr4_4:70300413-70300432	None:intergenic	25.0%
	AAAAAGGAGTAAGAGAGAAT+GGG	-	chr4_4:70298565-70298584	None:intergenic	30.0%
	TAAAAAGGAGTAAGAGAGAA+TGG	-	chr4_4:70298566-70298585	None:intergenic	30.0%
	TTTCTTGTCCATTGATCAAA+AGG	+	chr4_4:70298770-70298789	Msa0699560:five_prime_UTR	30.0%
	TTCTTGTCCATTGATCAAAA+GGG	+	chr4_4:70298771-70298790	Msa0699560:five_prime_UTR	30.0%
!!	TATTTTAGGAAGAAAAGGAG+AGG	+	chr4_4:70298934-70298953	Msa0699560:intron	30.0%
!!	ATTTTAGGAAGAAAAGGAGA+GGG	+	chr4_4:70298935-70298954	Msa0699560:intron	30.0%
	GTTACCTACTTATCTTAAGA+TGG	+	chr4_4:70299174-70299193	Msa0699560:intron	30.0%
	TTTGCCATCTTAAGATAAGT+AGG	-	chr4_4:70299181-70299200	None:intergenic	30.0%
!	ATAATGTGTCACTAAACACT+AGG	+	chr4_4:70299322-70299341	Msa0699560:intron	30.0%
!	GACTAGAATCAGCTTTTAAA+TGG	+	chr4_4:70299417-70299436	Msa0699560:intron	30.0%
!	TTCATTAGACATTTTGGACT+AGG	+	chr4_4:70299518-70299537	Msa0699560:intron	30.0%
!	TCATTAGACATTTTGGACTA+GGG	+	chr4_4:70299519-70299538	Msa0699560:intron	30.0%
	AATGTTTGGCAACAATTTAC+CGG	+	chr4_4:70299663-70299682	Msa0699560:intron	30.0%
	CTTGGAAAATAGTGATATTC+TGG	-	chr4_4:70300052-70300071	None:intergenic	30.0%
	ACTTAAAATAGAGCAAAGAC+CGG	+	chr4_4:70300175-70300194	Msa0699560:three_prime_UTR	30.0%
	ACGACATATGATGAAAACTT+GGG	-	chr4_4:70300222-70300241	None:intergenic	30.0%
	AACGACATATGATGAAAACT+TGG	-	chr4_4:70300223-70300242	None:intergenic	30.0%
	AAAAAGGAGTAAGAGAGAAT+GGG	-	chr4_4:70298565-70298584	None:intergenic	30.0%
	TAAAAAGGAGTAAGAGAGAA+TGG	-	chr4_4:70298566-70298585	None:intergenic	30.0%
	TTTCTTGTCCATTGATCAAA+AGG	+	chr4_4:70298770-70298789	Msa0699560:five_prime_UTR	30.0%
	TTCTTGTCCATTGATCAAAA+GGG	+	chr4_4:70298771-70298790	Msa0699560:five_prime_UTR	30.0%
!!	TATTTTAGGAAGAAAAGGAG+AGG	+	chr4_4:70298934-70298953	Msa0699560:intron	30.0%
!!	ATTTTAGGAAGAAAAGGAGA+GGG	+	chr4_4:70298935-70298954	Msa0699560:intron	30.0%
	GTTACCTACTTATCTTAAGA+TGG	+	chr4_4:70299174-70299193	Msa0699560:intron	30.0%
	TTTGCCATCTTAAGATAAGT+AGG	-	chr4_4:70299181-70299200	None:intergenic	30.0%
!	ATAATGTGTCACTAAACACT+AGG	+	chr4_4:70299322-70299341	Msa0699560:intron	30.0%
!	GACTAGAATCAGCTTTTAAA+TGG	+	chr4_4:70299417-70299436	Msa0699560:intron	30.0%
!	TTCATTAGACATTTTGGACT+AGG	+	chr4_4:70299518-70299537	Msa0699560:intron	30.0%
!	TCATTAGACATTTTGGACTA+GGG	+	chr4_4:70299519-70299538	Msa0699560:intron	30.0%
	AATGTTTGGCAACAATTTAC+CGG	+	chr4_4:70299663-70299682	Msa0699560:intron	30.0%
	CTTGGAAAATAGTGATATTC+TGG	-	chr4_4:70300052-70300071	None:intergenic	30.0%
	ACTTAAAATAGAGCAAAGAC+CGG	+	chr4_4:70300175-70300194	Msa0699560:three_prime_UTR	30.0%
	ACGACATATGATGAAAACTT+GGG	-	chr4_4:70300222-70300241	None:intergenic	30.0%
	AACGACATATGATGAAAACT+TGG	-	chr4_4:70300223-70300242	None:intergenic	30.0%
	AAAGGAGAGTGAGCATAAAA+AGG	-	chr4_4:70298581-70298600	None:intergenic	35.0%
	GAAAGAGGAGAAGAAATGAA+AGG	-	chr4_4:70298599-70298618	None:intergenic	35.0%
	TTCACTTAGGAAAGAGAAAG+AGG	-	chr4_4:70298614-70298633	None:intergenic	35.0%
	AAAGAAGCTGAGAAAAATGC+TGG	-	chr4_4:70298663-70298682	None:intergenic	35.0%
!	CATTTTTCTCAGCTTCTTTC+TGG	+	chr4_4:70298664-70298683	Msa0699560:five_prime_UTR	35.0%
	CAGTCATAGAGTTAGTTAAG+AGG	-	chr4_4:70298748-70298767	None:intergenic	35.0%
!	CCAATTACCCTTTTGATCAA+TGG	-	chr4_4:70298781-70298800	None:intergenic	35.0%
	CCATTGATCAAAAGGGTAAT+TGG	+	chr4_4:70298778-70298797	Msa0699560:five_prime_UTR	35.0%
!	AGCTGCTGCTATATATGTTT+TGG	-	chr4_4:70298869-70298888	None:intergenic	35.0%
	TACACAGAACAGTATCATCA+TGG	+	chr4_4:70298989-70299008	Msa0699560:exon	35.0%
	ACACTAATGACTGAAGATTC+AGG	-	chr4_4:70299131-70299150	None:intergenic	35.0%
	ATTATATGAACACGGCTACA+AGG	-	chr4_4:70299304-70299323	None:intergenic	35.0%
	ACCAATTTGGAAATTTCAGG+TGG	+	chr4_4:70299352-70299371	Msa0699560:intron	35.0%
	ACCACCTGAAATTTCCAAAT+TGG	-	chr4_4:70299356-70299375	None:intergenic	35.0%
!!	CATTAGACATTTTGGACTAG+GGG	+	chr4_4:70299520-70299539	Msa0699560:intron	35.0%
	ACATTTAACAACTGCTACCA+AGG	-	chr4_4:70299627-70299646	None:intergenic	35.0%
!	CATGACTTTTACAGGATGAA+AGG	+	chr4_4:70299829-70299848	Msa0699560:intron	35.0%
	ATGAAAGGATGCATGAAAAG+AGG	+	chr4_4:70299844-70299863	Msa0699560:CDS	35.0%
	AAAGGAGAGTGAGCATAAAA+AGG	-	chr4_4:70298581-70298600	None:intergenic	35.0%
	GAAAGAGGAGAAGAAATGAA+AGG	-	chr4_4:70298599-70298618	None:intergenic	35.0%
	TTCACTTAGGAAAGAGAAAG+AGG	-	chr4_4:70298614-70298633	None:intergenic	35.0%
	AAAGAAGCTGAGAAAAATGC+TGG	-	chr4_4:70298663-70298682	None:intergenic	35.0%
!	CATTTTTCTCAGCTTCTTTC+TGG	+	chr4_4:70298664-70298683	Msa0699560:five_prime_UTR	35.0%
	CAGTCATAGAGTTAGTTAAG+AGG	-	chr4_4:70298748-70298767	None:intergenic	35.0%
!	CCAATTACCCTTTTGATCAA+TGG	-	chr4_4:70298781-70298800	None:intergenic	35.0%
	CCATTGATCAAAAGGGTAAT+TGG	+	chr4_4:70298778-70298797	Msa0699560:five_prime_UTR	35.0%
!	AGCTGCTGCTATATATGTTT+TGG	-	chr4_4:70298869-70298888	None:intergenic	35.0%
	TACACAGAACAGTATCATCA+TGG	+	chr4_4:70298989-70299008	Msa0699560:exon	35.0%
	ACACTAATGACTGAAGATTC+AGG	-	chr4_4:70299131-70299150	None:intergenic	35.0%
	ATTATATGAACACGGCTACA+AGG	-	chr4_4:70299304-70299323	None:intergenic	35.0%
	ACCAATTTGGAAATTTCAGG+TGG	+	chr4_4:70299352-70299371	Msa0699560:intron	35.0%
	ACCACCTGAAATTTCCAAAT+TGG	-	chr4_4:70299356-70299375	None:intergenic	35.0%
!!	CATTAGACATTTTGGACTAG+GGG	+	chr4_4:70299520-70299539	Msa0699560:intron	35.0%
	ACATTTAACAACTGCTACCA+AGG	-	chr4_4:70299627-70299646	None:intergenic	35.0%
!	CATGACTTTTACAGGATGAA+AGG	+	chr4_4:70299829-70299848	Msa0699560:intron	35.0%
	ATGAAAGGATGCATGAAAAG+AGG	+	chr4_4:70299844-70299863	Msa0699560:CDS	35.0%
	ACTGTTCTGTGTAGTTACAC+TGG	-	chr4_4:70298982-70299001	None:intergenic	40.0%
	TTTCCCAGTTGAACATCCTA+TGG	+	chr4_4:70299067-70299086	Msa0699560:CDS	40.0%
	ATGACTGAAGATTCAGGCAT+TGG	-	chr4_4:70299125-70299144	None:intergenic	40.0%
	TGTCACTAAACACTAGGCTA+AGG	+	chr4_4:70299328-70299347	Msa0699560:intron	40.0%
	GTCACTAAACACTAGGCTAA+GGG	+	chr4_4:70299329-70299348	Msa0699560:intron	40.0%
	GGGACCAATTTGGAAATTTC+AGG	+	chr4_4:70299349-70299368	Msa0699560:intron	40.0%
	CTAGAAAGAGAAGCTGCAAA+GGG	-	chr4_4:70299550-70299569	None:intergenic	40.0%
	CAACAATTTACCGGTCATTC+TGG	+	chr4_4:70299672-70299691	Msa0699560:intron	40.0%
	TCAGTAGTTTCCAGAATGAC+CGG	-	chr4_4:70299685-70299704	None:intergenic	40.0%
!!	TGCAGTTCATTCTGAAGTTC+AGG	+	chr4_4:70299785-70299804	Msa0699560:intron	40.0%
!!	GCAGTTCATTCTGAAGTTCA+GGG	+	chr4_4:70299786-70299805	Msa0699560:intron	40.0%
!	CTGACAAGCATGACTTTTAC+AGG	+	chr4_4:70299821-70299840	Msa0699560:intron	40.0%
!	AGAGGAACACAGAAAGCATA+AGG	+	chr4_4:70299862-70299881	Msa0699560:CDS	40.0%
!	ACAGAAAGCATAAGGAAGAG+AGG	+	chr4_4:70299870-70299889	Msa0699560:CDS	40.0%
	AGATGTGGCATTCTCATCAA+TGG	-	chr4_4:70300014-70300033	None:intergenic	40.0%
!!	TATTCTGGGATTGTAGAGGA+GGG	-	chr4_4:70300037-70300056	None:intergenic	40.0%
!!	ATATTCTGGGATTGTAGAGG+AGG	-	chr4_4:70300038-70300057	None:intergenic	40.0%
!!	GTGATATTCTGGGATTGTAG+AGG	-	chr4_4:70300041-70300060	None:intergenic	40.0%
	CTTGCATGGAATGTTGTGAT+GGG	-	chr4_4:70300120-70300139	None:intergenic	40.0%
	AAAATGAATCCCTCCTTGCA+TGG	-	chr4_4:70300134-70300153	None:intergenic	40.0%
	ACTGTTCTGTGTAGTTACAC+TGG	-	chr4_4:70298982-70299001	None:intergenic	40.0%
	TTTCCCAGTTGAACATCCTA+TGG	+	chr4_4:70299067-70299086	Msa0699560:CDS	40.0%
	ATGACTGAAGATTCAGGCAT+TGG	-	chr4_4:70299125-70299144	None:intergenic	40.0%
	TGTCACTAAACACTAGGCTA+AGG	+	chr4_4:70299328-70299347	Msa0699560:intron	40.0%
	GTCACTAAACACTAGGCTAA+GGG	+	chr4_4:70299329-70299348	Msa0699560:intron	40.0%
	GGGACCAATTTGGAAATTTC+AGG	+	chr4_4:70299349-70299368	Msa0699560:intron	40.0%
	CTAGAAAGAGAAGCTGCAAA+GGG	-	chr4_4:70299550-70299569	None:intergenic	40.0%
	CAACAATTTACCGGTCATTC+TGG	+	chr4_4:70299672-70299691	Msa0699560:intron	40.0%
	TCAGTAGTTTCCAGAATGAC+CGG	-	chr4_4:70299685-70299704	None:intergenic	40.0%
!!	TGCAGTTCATTCTGAAGTTC+AGG	+	chr4_4:70299785-70299804	Msa0699560:intron	40.0%
!!	GCAGTTCATTCTGAAGTTCA+GGG	+	chr4_4:70299786-70299805	Msa0699560:intron	40.0%
!	CTGACAAGCATGACTTTTAC+AGG	+	chr4_4:70299821-70299840	Msa0699560:intron	40.0%
!	AGAGGAACACAGAAAGCATA+AGG	+	chr4_4:70299862-70299881	Msa0699560:CDS	40.0%
!	ACAGAAAGCATAAGGAAGAG+AGG	+	chr4_4:70299870-70299889	Msa0699560:CDS	40.0%
	AGATGTGGCATTCTCATCAA+TGG	-	chr4_4:70300014-70300033	None:intergenic	40.0%
!!	TATTCTGGGATTGTAGAGGA+GGG	-	chr4_4:70300037-70300056	None:intergenic	40.0%
!!	ATATTCTGGGATTGTAGAGG+AGG	-	chr4_4:70300038-70300057	None:intergenic	40.0%
!!	GTGATATTCTGGGATTGTAG+AGG	-	chr4_4:70300041-70300060	None:intergenic	40.0%
	CTTGCATGGAATGTTGTGAT+GGG	-	chr4_4:70300120-70300139	None:intergenic	40.0%
	AAAATGAATCCCTCCTTGCA+TGG	-	chr4_4:70300134-70300153	None:intergenic	40.0%
!	GCTAATGGGATTTTCATGCG+AGG	+	chr4_4:70298708-70298727	Msa0699560:five_prime_UTR	45.0%
	ACCACCATCATCATCATCAG+AGG	+	chr4_4:70299024-70299043	Msa0699560:CDS	45.0%
	CCACCATCATCATCATCAGA+GGG	+	chr4_4:70299025-70299044	Msa0699560:CDS	45.0%
!	CAACCCTCTGATGATGATGA+TGG	-	chr4_4:70299031-70299050	None:intergenic	45.0%
	GCTCCATAGGATGTTCAACT+GGG	-	chr4_4:70299073-70299092	None:intergenic	45.0%
!!	TCAGGCATTGGACATTTCAC+CGG	-	chr4_4:70299113-70299132	None:intergenic	45.0%
	ATGGCAAAGCATGCTTTGCA+TGG	+	chr4_4:70299193-70299212	Msa0699560:intron	45.0%
	ACTAGGCTAAGGGACCAATT+TGG	+	chr4_4:70299339-70299358	Msa0699560:intron	45.0%
	GCTAGAAAGAGAAGCTGCAA+AGG	-	chr4_4:70299551-70299570	None:intergenic	45.0%
	TCCTGATGATCCATGAGTGA+GGG	-	chr4_4:70299976-70299995	None:intergenic	45.0%
	TTTCCAAGTGCTTCAGCAGT+TGG	+	chr4_4:70300064-70300083	Msa0699560:CDS	45.0%
	CCTTGCATGGAATGTTGTGA+TGG	-	chr4_4:70300121-70300140	None:intergenic	45.0%
	CCATCACAACATTCCATGCA+AGG	+	chr4_4:70300118-70300137	Msa0699560:three_prime_UTR	45.0%
	TCACAACATTCCATGCAAGG+AGG	+	chr4_4:70300121-70300140	Msa0699560:three_prime_UTR	45.0%
	CACAACATTCCATGCAAGGA+GGG	+	chr4_4:70300122-70300141	Msa0699560:three_prime_UTR	45.0%
	TCTTCATGCACCAATGCTTC+CGG	-	chr4_4:70300197-70300216	None:intergenic	45.0%
!	GCTAATGGGATTTTCATGCG+AGG	+	chr4_4:70298708-70298727	Msa0699560:five_prime_UTR	45.0%
	ACCACCATCATCATCATCAG+AGG	+	chr4_4:70299024-70299043	Msa0699560:CDS	45.0%
	CCACCATCATCATCATCAGA+GGG	+	chr4_4:70299025-70299044	Msa0699560:CDS	45.0%
!	CAACCCTCTGATGATGATGA+TGG	-	chr4_4:70299031-70299050	None:intergenic	45.0%
	GCTCCATAGGATGTTCAACT+GGG	-	chr4_4:70299073-70299092	None:intergenic	45.0%
!!	TCAGGCATTGGACATTTCAC+CGG	-	chr4_4:70299113-70299132	None:intergenic	45.0%
	ATGGCAAAGCATGCTTTGCA+TGG	+	chr4_4:70299193-70299212	Msa0699560:intron	45.0%
	ACTAGGCTAAGGGACCAATT+TGG	+	chr4_4:70299339-70299358	Msa0699560:intron	45.0%
	GCTAGAAAGAGAAGCTGCAA+AGG	-	chr4_4:70299551-70299570	None:intergenic	45.0%
	TCCTGATGATCCATGAGTGA+GGG	-	chr4_4:70299976-70299995	None:intergenic	45.0%
	TTTCCAAGTGCTTCAGCAGT+TGG	+	chr4_4:70300064-70300083	Msa0699560:CDS	45.0%
	CCTTGCATGGAATGTTGTGA+TGG	-	chr4_4:70300121-70300140	None:intergenic	45.0%
	CCATCACAACATTCCATGCA+AGG	+	chr4_4:70300118-70300137	Msa0699560:three_prime_UTR	45.0%
	TCACAACATTCCATGCAAGG+AGG	+	chr4_4:70300121-70300140	Msa0699560:three_prime_UTR	45.0%
	CACAACATTCCATGCAAGGA+GGG	+	chr4_4:70300122-70300141	Msa0699560:three_prime_UTR	45.0%
	TCTTCATGCACCAATGCTTC+CGG	-	chr4_4:70300197-70300216	None:intergenic	45.0%
!!	CCCTCTGATGATGATGATGG+TGG	-	chr4_4:70299028-70299047	None:intergenic	50.0%
	GGCTCCATAGGATGTTCAAC+TGG	-	chr4_4:70299074-70299093	None:intergenic	50.0%
	TGAACATCCTATGGAGCCAC+CGG	+	chr4_4:70299076-70299095	Msa0699560:CDS	50.0%
	TTCACCGGACGATCTTCATC+CGG	-	chr4_4:70299098-70299117	None:intergenic	50.0%
	AGGAAGAGAGGTGAGATGTC+TGG	+	chr4_4:70299882-70299901	Msa0699560:CDS	50.0%
	GGAAGAGAGGTGAGATGTCT+GGG	+	chr4_4:70299883-70299902	Msa0699560:CDS	50.0%
	TGGACAAAGAACAGCTGGCA+TGG	+	chr4_4:70299908-70299927	Msa0699560:CDS	50.0%
	ACCCTCACTCATGGATCATC+AGG	+	chr4_4:70299972-70299991	Msa0699560:CDS	50.0%
	CTCCTGATGATCCATGAGTG+AGG	-	chr4_4:70299977-70299996	None:intergenic	50.0%
	GATTGTAGAGGAGGGAGATG+TGG	-	chr4_4:70300029-70300048	None:intergenic	50.0%
!	TGTCCAACTGCTGAAGCACT+TGG	-	chr4_4:70300070-70300089	None:intergenic	50.0%
!	AGAGCAAAGACCGGAAGCAT+TGG	+	chr4_4:70300184-70300203	Msa0699560:three_prime_UTR	50.0%
	AGAGAGAGAGAGAGAGAGAG+AGG	-	chr4_4:70298520-70298539	None:intergenic	50.0%
!!	CCCTCTGATGATGATGATGG+TGG	-	chr4_4:70299028-70299047	None:intergenic	50.0%
	GGCTCCATAGGATGTTCAAC+TGG	-	chr4_4:70299074-70299093	None:intergenic	50.0%
	TGAACATCCTATGGAGCCAC+CGG	+	chr4_4:70299076-70299095	Msa0699560:CDS	50.0%
	TTCACCGGACGATCTTCATC+CGG	-	chr4_4:70299098-70299117	None:intergenic	50.0%
	AGGAAGAGAGGTGAGATGTC+TGG	+	chr4_4:70299882-70299901	Msa0699560:CDS	50.0%
	GGAAGAGAGGTGAGATGTCT+GGG	+	chr4_4:70299883-70299902	Msa0699560:CDS	50.0%
	TGGACAAAGAACAGCTGGCA+TGG	+	chr4_4:70299908-70299927	Msa0699560:CDS	50.0%
	ACCCTCACTCATGGATCATC+AGG	+	chr4_4:70299972-70299991	Msa0699560:CDS	50.0%
	CTCCTGATGATCCATGAGTG+AGG	-	chr4_4:70299977-70299996	None:intergenic	50.0%
	GATTGTAGAGGAGGGAGATG+TGG	-	chr4_4:70300029-70300048	None:intergenic	50.0%
!	TGTCCAACTGCTGAAGCACT+TGG	-	chr4_4:70300070-70300089	None:intergenic	50.0%
!	AGAGCAAAGACCGGAAGCAT+TGG	+	chr4_4:70300184-70300203	Msa0699560:three_prime_UTR	50.0%
	TCTTCATCCGGTGGCTCCAT+AGG	-	chr4_4:70299086-70299105	None:intergenic	55.0%
	AGAGGTGAGATGTCTGGGTC+TGG	+	chr4_4:70299888-70299907	Msa0699560:CDS	55.0%
	GGGTCTGGACAAAGAACAGC+TGG	+	chr4_4:70299903-70299922	Msa0699560:CDS	55.0%
	TCTTCATCCGGTGGCTCCAT+AGG	-	chr4_4:70299086-70299105	None:intergenic	55.0%
	AGAGGTGAGATGTCTGGGTC+TGG	+	chr4_4:70299888-70299907	Msa0699560:CDS	55.0%
	GGGTCTGGACAAAGAACAGC+TGG	+	chr4_4:70299903-70299922	Msa0699560:CDS	55.0%
	GCCACCGGATGAAGATCGTC+CGG	+	chr4_4:70299091-70299110	Msa0699560:CDS	60.0%
	ACCGGACGATCTTCATCCGG+TGG	-	chr4_4:70299095-70299114	None:intergenic	60.0%
	CTTTCGCACTCCTCGAGCTG+GGG	-	chr4_4:70299943-70299962	None:intergenic	60.0%
	GCTTTCGCACTCCTCGAGCT+GGG	-	chr4_4:70299944-70299963	None:intergenic	60.0%
!	CAGCTCGAGGAGTGCGAAAG+CGG	+	chr4_4:70299943-70299962	Msa0699560:CDS	60.0%
	CGGCATCACACCCTCACTCA+TGG	+	chr4_4:70299963-70299982	Msa0699560:CDS	60.0%
	GCCACCGGATGAAGATCGTC+CGG	+	chr4_4:70299091-70299110	Msa0699560:CDS	60.0%
	ACCGGACGATCTTCATCCGG+TGG	-	chr4_4:70299095-70299114	None:intergenic	60.0%
	CTTTCGCACTCCTCGAGCTG+GGG	-	chr4_4:70299943-70299962	None:intergenic	60.0%
	GCTTTCGCACTCCTCGAGCT+GGG	-	chr4_4:70299944-70299963	None:intergenic	60.0%
!	CAGCTCGAGGAGTGCGAAAG+CGG	+	chr4_4:70299943-70299962	Msa0699560:CDS	60.0%
	CGGCATCACACCCTCACTCA+TGG	+	chr4_4:70299963-70299982	Msa0699560:CDS	60.0%
	GACACAGATGCCCCAGCTCG+AGG	+	chr4_4:70299930-70299949	Msa0699560:CDS	65.0%
	CGCTTTCGCACTCCTCGAGC+TGG	-	chr4_4:70299945-70299964	None:intergenic	65.0%
	GACACAGATGCCCCAGCTCG+AGG	+	chr4_4:70299930-70299949	Msa0699560:CDS	65.0%
	CGCTTTCGCACTCCTCGAGC+TGG	-	chr4_4:70299945-70299964	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	70298520	70300450	70298520	ID=Msa0699560;Name=Msa0699560
chr4_4	mRNA	70298520	70300450	70298520	ID=Msa0699560-mRNA-1;Parent=Msa0699560;Name=Msa0699560-mRNA-1;_AED=0.16;_eAED=0.16;_QI=363\|1\|1\|1\|0.5\|0.33\|3\|347\|133
chr4_4	exon	70298520	70298816	70298520	ID=Msa0699560-mRNA-1:exon:21242;Parent=Msa0699560-mRNA-1
chr4_4	exon	70298942	70299148	70298942	ID=Msa0699560-mRNA-1:exon:21243;Parent=Msa0699560-mRNA-1
chr4_4	exon	70299843	70300450	70299843	ID=Msa0699560-mRNA-1:exon:21244;Parent=Msa0699560-mRNA-1
chr4_4	five_prime_UTR	70298520	70298816	70298520	ID=Msa0699560-mRNA-1:five_prime_utr;Parent=Msa0699560-mRNA-1
chr4_4	five_prime_UTR	70298942	70299007	70298942	ID=Msa0699560-mRNA-1:five_prime_utr;Parent=Msa0699560-mRNA-1
chr4_4	CDS	70299008	70299148	70299008	ID=Msa0699560-mRNA-1:cds;Parent=Msa0699560-mRNA-1
chr4_4	CDS	70299843	70300103	70299843	ID=Msa0699560-mRNA-1:cds;Parent=Msa0699560-mRNA-1
chr4_4	three_prime_UTR	70300104	70300450	70300104	ID=Msa0699560-mRNA-1:three_prime_utr;Parent=Msa0699560-mRNA-1

Gene Sequence

>Msa0699560

ATGGAAGTGTATCATCACCACCATCATCATCATCAGAGGGTTGATAACAACACAGATTTTTTCCCAGTTGAACATCCTATGGAGCCACCGGATGAAGATCGTCCGGTGAAATGTCCAATGCCTGAATCTTCAGTCATTAGTGATGAAAGGATGCATGAAAAGAGGAACACAGAAAGCATAAGGAAGAGAGGTGAGATGTCTGGGTCTGGACAAAGAACAGCTGGCATGGACACAGATGCCCCAGCTCGAGGAGTGCGAAAGCGGCATCACACCCTCACTCATGGATCATCAGGAGACATTGTGATGACTCCATTGATGAGAATGCCACATCTCCCTCCTCTACAATCCCAGAATATCACTATTTTCCAAGTGCTTCAGCAGTTGGACAAGTTTGAGTCTTAA

Protein sequence

>Msa0699560

MEVYHHHHHHHQRVDNNTDFFPVEHPMEPPDEDRPVKCPMPESSVISDERMHEKRNTESIRKRGEMSGSGQRTAGMDTDAPARGVRKRHHTLTHGSSGDIVMTPLMRMPHLPPLQSQNITIFQVLQQLDKFES*