Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104570 | sp|A2Z3C4|6PGL4_ORYSI | 62.810 | 242 | 87 | 3 | 78 | 316 | 80 | 321 | 5.61e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104570 | A0A072VFQ2 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005390 | Msa0104570 | 0.813520 | 2.455342e-51 | -8.615850e-47 |
| Msa0006840 | Msa0104570 | 0.815904 | 7.278759e-52 | -8.615850e-47 |
| Msa0009780 | Msa0104570 | 0.940258 | 3.174463e-100 | -8.615850e-47 |
| Msa0050530 | Msa0104570 | 0.811313 | 7.453381e-51 | -8.615850e-47 |
| Msa0053850 | Msa0104570 | 0.812639 | 3.830890e-51 | -8.615850e-47 |
| Msa0064120 | Msa0104570 | 0.828833 | 7.214852e-55 | -8.615850e-47 |
| Msa0069350 | Msa0104570 | 0.852470 | 4.521752e-61 | -8.615850e-47 |
| Msa0100890 | Msa0104570 | 0.819227 | 1.297643e-52 | -8.615850e-47 |
| Msa0104570 | Msa0150590 | 0.854807 | 9.622184e-62 | -8.615850e-47 |
| Msa0104570 | Msa0155180 | 0.836835 | 7.412715e-57 | -8.615850e-47 |
| Msa0104570 | Msa0159980 | 0.810994 | 8.740754e-51 | -8.615850e-47 |
| Msa0104570 | Msa0177970 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
| Msa0104570 | Msa0241040 | 0.840408 | 8.854159e-58 | -8.615850e-47 |
| Msa0104570 | Msa0278840 | 0.839942 | 1.171642e-57 | -8.615850e-47 |
| Msa0104570 | Msa0420430 | 0.812113 | 4.992959e-51 | -8.615850e-47 |
| Msa0104570 | Msa0427820 | 0.843584 | 1.280806e-58 | -8.615850e-47 |
| Msa0104570 | Msa0474060 | 0.832642 | 8.415255e-56 | -8.615850e-47 |
| Msa0104570 | Msa0518680 | 0.847553 | 1.075481e-59 | -8.615850e-47 |
| Msa0104570 | Msa0541740 | 0.803696 | 3.081380e-49 | -8.615850e-47 |
| Msa0104570 | Msa0557850 | 0.817825 | 2.697902e-52 | -8.615850e-47 |
| Msa0104570 | Msa0576330 | 0.821751 | 3.417616e-53 | -8.615850e-47 |
| Msa0104570 | Msa0577650 | 0.803571 | 3.271963e-49 | -8.615850e-47 |
| Msa0104570 | Msa0577740 | 0.806352 | 8.578018e-50 | -8.615850e-47 |
| Msa0104570 | Msa0616230 | 0.812582 | 3.942431e-51 | -8.615850e-47 |
| Msa0104570 | Msa0653160 | 0.842754 | 2.131267e-58 | -8.615850e-47 |
| Msa0104570 | Msa0655710 | 0.823006 | 1.746867e-53 | -8.615850e-47 |
| Msa0104570 | Msa0657210 | 0.802147 | 6.440126e-49 | -8.615850e-47 |
| Msa0104570 | Msa0687370 | 0.806400 | 8.378770e-50 | -8.615850e-47 |
| Msa0104570 | Msa0695560 | 0.829317 | 5.507505e-55 | -8.615850e-47 |
| Msa0104570 | Msa0699560 | 0.800943 | 1.136907e-48 | -8.615850e-47 |
| Msa0104570 | Msa0701250 | 0.800692 | 1.278935e-48 | -8.615850e-47 |
| Msa0104570 | Msa0741970 | 0.828100 | 1.084490e-54 | -8.615850e-47 |
| Msa0104570 | Msa0750520 | 0.800083 | 1.702138e-48 | -8.615850e-47 |
| Msa0104570 | Msa0764770 | 0.833082 | 6.541254e-56 | -8.615850e-47 |
| Msa0104570 | Msa0799170 | 0.804235 | 2.380738e-49 | -8.615850e-47 |
| Msa0104570 | Msa0823170 | 0.800153 | 1.647528e-48 | -8.615850e-47 |
| Msa0104570 | Msa0844400 | 0.820635 | 6.180378e-53 | -8.615850e-47 |
| Msa0104570 | Msa1033420 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa0104570 | Msa1060300 | 0.809698 | 1.664065e-50 | -8.615850e-47 |
| Msa0104570 | Msa1060340 | 0.815948 | 7.116857e-52 | -8.615850e-47 |
| Msa0104570 | Msa1073060 | 0.802578 | 5.250402e-49 | -8.615850e-47 |
| Msa0104570 | Msa1085680 | 0.817382 | 3.394561e-52 | -8.615850e-47 |
| Msa0104570 | Msa1105540 | 0.820403 | 6.986345e-53 | -8.615850e-47 |
| Msa0104570 | Msa1105580 | 0.815922 | 7.212456e-52 | -8.615850e-47 |
| Msa0104570 | Msa1144990 | 0.812232 | 4.702609e-51 | -8.615850e-47 |
| Msa0104570 | Msa1148930 | 0.814294 | 1.657382e-51 | -8.615850e-47 |
| Msa0104570 | Msa1191550 | 0.836622 | 8.400720e-57 | -8.615850e-47 |
| Msa0104570 | Msa1227760 | 0.852107 | 5.734361e-61 | -8.615850e-47 |
| Msa0104570 | Msa1267930 | 0.801131 | 1.040417e-48 | -8.615850e-47 |
| Msa0104570 | Msa1270840 | 0.834286 | 3.272969e-56 | -8.615850e-47 |
| Msa0104570 | Msa1308860 | 0.809702 | 1.660465e-50 | -8.615850e-47 |
| Msa0104570 | Msa1360930 | 0.809557 | 1.783970e-50 | -8.615850e-47 |
| Msa0104570 | Msa1369410 | 0.839326 | 1.694222e-57 | -8.615850e-47 |
| Msa0104570 | Msa1372030 | 0.801507 | 8.717046e-49 | -8.615850e-47 |
| Msa0104570 | Msa1389310 | 0.813503 | 2.476227e-51 | -8.615850e-47 |
| Msa0104570 | Msa1443210 | 0.812328 | 4.481051e-51 | -8.615850e-47 |
| Msa0104570 | Msa1465040 | 0.831517 | 1.596385e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104570 | MtrunA17_Chr1g0158821 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 637 |
| Msa0104570 | MtrunA17_Chr1g0158811 | 62.848 | 323 | 111 | 6 | 1 | 318 | 1 | 319 | 1.77e-137 | 392 |
| Msa0104570 | MtrunA17_Chr3g0127471 | 59.744 | 313 | 119 | 5 | 7 | 316 | 1 | 309 | 8.38e-122 | 352 |
| Msa0104570 | MtrunA17_Chr5g0419391 | 48.347 | 242 | 122 | 3 | 78 | 316 | 18 | 259 | 1.50e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104570 | AT5G24400.1 | 50.654 | 306 | 139 | 4 | 13 | 316 | 30 | 325 | 2.29e-101 | 301 |
| Msa0104570 | AT3G49360.1 | 51.639 | 244 | 110 | 3 | 78 | 316 | 11 | 251 | 6.21e-83 | 251 |
| Msa0104570 | AT5G24420.1 | 49.213 | 254 | 122 | 3 | 68 | 316 | 1 | 252 | 4.47e-79 | 241 |
| Msa0104570 | AT1G13700.2 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 3.24e-78 | 239 |
| Msa0104570 | AT1G13700.3 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 3.24e-78 | 239 |
| Msa0104570 | AT1G13700.1 | 47.541 | 244 | 123 | 3 | 80 | 318 | 20 | 263 | 3.24e-78 | 239 |
| Msa0104570 | AT5G24410.1 | 50.410 | 244 | 113 | 3 | 78 | 316 | 17 | 257 | 2.48e-77 | 237 |
Find 83 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTATGCTATTAGATA+TGG | 0.219132 | 1_3:-12509724 | Msa0104570:CDS |
| AATAGCATAAGATCAAATTT+TGG | 0.228100 | 1_3:+12509732 | None:intergenic |
| TGCTTGTGACCAAACGTCTT+AGG | 0.231392 | 1_3:+12509787 | None:intergenic |
| CATGTAGCTTCTTTGTTTCC+AGG | 0.258573 | 1_3:-12509690 | Msa0104570:CDS |
| GGAGAGGTCAGCAACATATT+TGG | 0.269169 | 1_3:+12510716 | None:intergenic |
| TTTATTGAGCAAAATAAGTA+TGG | 0.285866 | 1_3:-12508996 | Msa0104570:three_prime_UTR |
| GGAGCATCTTGCTGTGTCTT+TGG | 0.286314 | 1_3:-12510739 | Msa0104570:CDS |
| CCACCAACATGAATTCTCTT+AGG | 0.287083 | 1_3:+12510813 | None:intergenic |
| AGCAGCAATTGAAATATATA+AGG | 0.290973 | 1_3:+12509200 | None:intergenic |
| AATATTGCTATGGTTGTTAC+TGG | 0.299118 | 1_3:-12509558 | Msa0104570:CDS |
| TTGCTATCAACGTGAGTCTT+TGG | 0.304718 | 1_3:+12510209 | None:intergenic |
| ATCCTCTCCGGCGGCGGTTT+AGG | 0.316898 | 1_3:+12509615 | None:intergenic |
| TGGACAAGGGTGCTGCTTCA+AGG | 0.364070 | 1_3:-12509431 | Msa0104570:CDS |
| GTCATTGGTGTCACCTCAAT+TGG | 0.367130 | 1_3:-12510886 | Msa0104570:CDS |
| CTGGACCCGTCAAGTATCTA+AGG | 0.376988 | 1_3:-12510647 | Msa0104570:intron |
| ATAGGAAGCTTATTATCATT+AGG | 0.380697 | 1_3:+12509492 | None:intergenic |
| AACCATTTGATATCTCCTTC+AGG | 0.389182 | 1_3:+12509456 | None:intergenic |
| AGGAGATATCAAATGGTTCT+TGG | 0.390569 | 1_3:-12509451 | Msa0104570:CDS |
| ATATCAAAATCATCCCTAAC+TGG | 0.394516 | 1_3:-12509759 | Msa0104570:CDS |
| GATCTTATGCTATTAGATAT+GGG | 0.400581 | 1_3:-12509723 | Msa0104570:CDS |
| GTGCTGCTTCAAGGCTCTAT+AGG | 0.417306 | 1_3:-12509422 | Msa0104570:CDS |
| GCTTGTGACCAAACGTCTTA+GGG | 0.422653 | 1_3:+12509788 | None:intergenic |
| TGAGACAACCCTAAGACGTT+TGG | 0.427530 | 1_3:-12509796 | Msa0104570:CDS |
| GAAGTCACATTGTGTCTTAG+AGG | 0.429893 | 1_3:+12510843 | None:intergenic |
| AAGAAAATAAAGCAATATGA+TGG | 0.435650 | 1_3:-12509176 | Msa0104570:three_prime_UTR |
| GCTATGGTTGTTACTGGTGC+TGG | 0.441325 | 1_3:-12509552 | Msa0104570:CDS |
| AATTCACAATTTCAGGAAGC+TGG | 0.444188 | 1_3:-12510303 | Msa0104570:intron |
| TTGTGTTTGTGACTTATGTT+TGG | 0.447295 | 1_3:+12510920 | None:intergenic |
| GTTTACTCTGCACTTGAGAA+AGG | 0.447789 | 1_3:-12509516 | Msa0104570:CDS |
| CAATCGATAGTGTCACAATA+TGG | 0.447946 | 1_3:+12510272 | None:intergenic |
| CATTGTTTCTAACTAATCAA+TGG | 0.450887 | 1_3:-12510994 | Msa0104570:exon |
| TGCTACTTCAAATATTGCTA+TGG | 0.455962 | 1_3:-12509568 | Msa0104570:CDS |
| ACAATCATCAACCATGTCAT+TGG | 0.469484 | 1_3:-12510901 | Msa0104570:CDS |
| CTTAGATACTTGACGGGTCC+AGG | 0.470356 | 1_3:+12510648 | None:intergenic |
| TTGGAATGCAACATGCTTTG+TGG | 0.479757 | 1_3:+12510939 | None:intergenic |
| TGCTGCTCCATCAGCTGGTA+GGG | 0.490513 | 1_3:+12509827 | None:intergenic |
| ATGTAGCTTCTTTGTTTCCA+GGG | 0.494234 | 1_3:-12509689 | Msa0104570:CDS |
| AAAGAAGCTACATGTCCATC+AGG | 0.494933 | 1_3:+12509699 | None:intergenic |
| AAAGTAATCCTCTCCGGCGG+CGG | 0.497561 | 1_3:+12509609 | None:intergenic |
| TCATTCACTGCAGGGTACCC+TGG | 0.499722 | 1_3:+12509672 | None:intergenic |
| CCTAAGAGAATTCATGTTGG+TGG | 0.500842 | 1_3:-12510813 | Msa0104570:CDS |
| ACATCTGCTGCTCCATCAGC+TGG | 0.514811 | 1_3:+12509822 | None:intergenic |
| TCAATTGTGTTCACATTGAG+TGG | 0.517319 | 1_3:+12509855 | None:intergenic |
| AAGCAATATGATGGGACTGC+TGG | 0.518393 | 1_3:-12509167 | Msa0104570:three_prime_UTR |
| TAATAAGCTTCCTATTCAAA+AGG | 0.521966 | 1_3:-12509484 | Msa0104570:CDS |
| GAGAATTCATGTTGGTGGCT+TGG | 0.523036 | 1_3:-12510808 | Msa0104570:CDS |
| CTGCTGCTCCATCAGCTGGT+AGG | 0.523186 | 1_3:+12509826 | None:intergenic |
| TCATTGGTGTCACCTCAATT+GGG | 0.523821 | 1_3:-12510885 | Msa0104570:CDS |
| CGTTAGAATGAATGTTGCTC+GGG | 0.526852 | 1_3:+12509375 | None:intergenic |
| ACAATACCTTAGATACTTGA+CGG | 0.530977 | 1_3:+12510641 | None:intergenic |
| TTTGAAGTAGCATTAATCAC+TGG | 0.530984 | 1_3:+12509579 | None:intergenic |
| CTATTAGATATGGGACCTGA+TGG | 0.532418 | 1_3:-12509714 | Msa0104570:CDS |
| CAATTGTGTTCACATTGAGT+GGG | 0.534779 | 1_3:+12509856 | None:intergenic |
| ATCCTGAAGGAGATATCAAA+TGG | 0.537202 | 1_3:-12509458 | Msa0104570:CDS |
| TATCAAATGGTTCTTGGACA+AGG | 0.539582 | 1_3:-12509445 | Msa0104570:CDS |
| TGCTTTGTGGAGTGCATGAA+AGG | 0.542015 | 1_3:+12510952 | None:intergenic |
| AGAAAATAAAGCAATATGAT+GGG | 0.544826 | 1_3:-12509175 | Msa0104570:three_prime_UTR |
| GATGATTCCCTACCAGCTGA+TGG | 0.545667 | 1_3:-12509834 | Msa0104570:CDS |
| ATGGATCGTATATATAGTGT+TGG | 0.550526 | 1_3:+12509305 | None:intergenic |
| ACGTTAGAATGAATGTTGCT+CGG | 0.555026 | 1_3:+12509374 | None:intergenic |
| TCATGTTGGTGGCTTGGTGA+AGG | 0.564204 | 1_3:-12510802 | Msa0104570:CDS |
| AAGTCACATTGTGTCTTAGA+GGG | 0.566952 | 1_3:+12510844 | None:intergenic |
| TTTCAGTCTCATTCACTGCA+GGG | 0.571958 | 1_3:+12509664 | None:intergenic |
| AATGTAAAAGTAATCCTCTC+CGG | 0.574221 | 1_3:+12509603 | None:intergenic |
| CAATACCTTAGATACTTGAC+GGG | 0.575298 | 1_3:+12510642 | None:intergenic |
| ATCAAATGGTTCTTGGACAA+GGG | 0.578434 | 1_3:-12509444 | Msa0104570:CDS |
| ATTCAAAAGGTGAATCCTGA+AGG | 0.582947 | 1_3:-12509471 | Msa0104570:CDS |
| CACCTAAACCGCCGCCGGAG+AGG | 0.588803 | 1_3:-12509617 | Msa0104570:CDS |
| TAACGATAGCTTCATCTCCA+AGG | 0.599323 | 1_3:-12510174 | Msa0104570:intron |
| CATATTGTGACACTATCGAT+TGG | 0.601292 | 1_3:-12510271 | Msa0104570:CDS |
| ACACTATCGATTGGTCTAAG+TGG | 0.610653 | 1_3:-12510262 | Msa0104570:CDS |
| AATTGTGTTCACATTGAGTG+GGG | 0.620392 | 1_3:+12509857 | None:intergenic |
| GCTTTGTGGAGTGCATGAAA+GGG | 0.623902 | 1_3:+12510953 | None:intergenic |
| AAACCTAAGAGAATTCATGT+TGG | 0.624267 | 1_3:-12510816 | Msa0104570:CDS |
| GAATGCACCTAAACCGCCGC+CGG | 0.626616 | 1_3:-12509622 | Msa0104570:CDS |
| GGATGTGCATGTGCTAAGCA+AGG | 0.627699 | 1_3:-12510760 | Msa0104570:CDS |
| TTATCGAGTGAAATTCATGC+AGG | 0.629948 | 1_3:+12509266 | None:intergenic |
| ATTGTGTTCACATTGAGTGG+GGG | 0.652455 | 1_3:+12509858 | None:intergenic |
| TCGATAGTGTCACAATATGG+TGG | 0.659952 | 1_3:+12510275 | None:intergenic |
| GTAAAAGTAATCCTCTCCGG+CGG | 0.709915 | 1_3:+12509606 | None:intergenic |
| GGCATCAATGAATAACAACA+AGG | 0.718422 | 1_3:-12510781 | Msa0104570:CDS |
| TTGAGGTGACACCAATGACA+TGG | 0.719081 | 1_3:+12510890 | None:intergenic |
| GGGTCCAGGAGACAAAACGA+CGG | 0.806572 | 1_3:+12510662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTCTACTAAAA+AGG | + | chr1_3:12509560-12509579 | None:intergenic | 10.0% |
| !!! | TTTTTAGTAGAAAAATAAAA+TGG | - | chr1_3:12509559-12509578 | Msa0104570:CDS | 10.0% |
| !! | TGTATAGATATTATTATTAA+AGG | - | chr1_3:12509947-12509966 | Msa0104570:intron | 10.0% |
| !! | ATTCTCAAAGTTAATTATTT+GGG | - | chr1_3:12509621-12509640 | Msa0104570:CDS | 15.0% |
| !! | TTAAAGGTTAATTAAGTAAA+TGG | - | chr1_3:12509963-12509982 | Msa0104570:intron | 15.0% |
| !!! | TTTTTCTTTTTGAATGTAAA+TGG | - | chr1_3:12510918-12510937 | Msa0104570:CDS | 15.0% |
| !! | GATTCTCAAAGTTAATTATT+TGG | - | chr1_3:12509620-12509639 | Msa0104570:CDS | 20.0% |
| !! | AATGAAAATCTAGATATTTC+CGG | + | chr1_3:12509992-12510011 | None:intergenic | 20.0% |
| !!! | ATAGCATAAGATCAAATTTT+GGG | + | chr1_3:12510239-12510258 | None:intergenic | 20.0% |
| !!! | AATAGCATAAGATCAAATTT+TGG | + | chr1_3:12510240-12510259 | None:intergenic | 20.0% |
| !! | AAGAAAATAAAGCAATATGA+TGG | - | chr1_3:12510793-12510812 | Msa0104570:CDS | 20.0% |
| !! | AGAAAATAAAGCAATATGAT+GGG | - | chr1_3:12510794-12510813 | Msa0104570:CDS | 20.0% |
| !!! | AATAAAAACACACACATTTT+AGG | + | chr1_3:12510959-12510978 | None:intergenic | 20.0% |
| !! | TTTATTGAGCAAAATAAGTA+TGG | - | chr1_3:12510973-12510992 | Msa0104570:CDS | 20.0% |
| !!! | CATTGTTTCTAACTAATCAA+TGG | - | chr1_3:12508975-12508994 | Msa0104570:three_prime_UTR | 25.0% |
| !! | CTTCTCTCTAATGTATTTTT+CGG | + | chr1_3:12509277-12509296 | None:intergenic | 25.0% |
| ! | GAAAAATACATTAGAGAGAA+GGG | - | chr1_3:12509276-12509295 | Msa0104570:three_prime_UTR | 25.0% |
| !!! | TTTTTAAAGAGTAAGATGCT+AGG | + | chr1_3:12509365-12509384 | None:intergenic | 25.0% |
| !! | AGCATCTTACTCTTTAAAAA+TGG | - | chr1_3:12509365-12509384 | Msa0104570:three_prime_UTR | 25.0% |
| !! | TACTCTTTAAAAATGGATAG+AGG | - | chr1_3:12509372-12509391 | Msa0104570:three_prime_UTR | 25.0% |
| ! | TATTTATTGCCAATTGTCTA+GGG | + | chr1_3:12509527-12509546 | None:intergenic | 25.0% |
| ! | ATTCTTGAATTCACAATTTC+AGG | - | chr1_3:12509659-12509678 | Msa0104570:CDS | 25.0% |
| ! | ATGAAAATCTAGATATTTCC+GGG | + | chr1_3:12509991-12510010 | None:intergenic | 25.0% |
| ! | CTAAGTCACATTATTGTATT+TGG | - | chr1_3:12510076-12510095 | Msa0104570:intron | 25.0% |
| ! | TGATCTTATGCTATTAGATA+TGG | - | chr1_3:12510245-12510264 | Msa0104570:CDS | 25.0% |
| ! | GATCTTATGCTATTAGATAT+GGG | - | chr1_3:12510246-12510265 | Msa0104570:CDS | 25.0% |
| ! | ATAGGAAGCTTATTATCATT+AGG | + | chr1_3:12510480-12510499 | None:intergenic | 25.0% |
| ! | TAATAAGCTTCCTATTCAAA+AGG | - | chr1_3:12510485-12510504 | Msa0104570:intron | 25.0% |
| !!! | TATACGATCCATTTTTAAGA+TGG | - | chr1_3:12510675-12510694 | Msa0104570:CDS | 25.0% |
| ! | AGCAGCAATTGAAATATATA+AGG | + | chr1_3:12510772-12510791 | None:intergenic | 25.0% |
| TTGTGTTTGTGACTTATGTT+TGG | + | chr1_3:12509052-12509071 | None:intergenic | 30.0% | |
| AAACCTAAGAGAATTCATGT+TGG | - | chr1_3:12509153-12509172 | Msa0104570:three_prime_UTR | 30.0% | |
| CGAAAAATACATTAGAGAGA+AGG | - | chr1_3:12509275-12509294 | Msa0104570:three_prime_UTR | 30.0% | |
| ACAATACCTTAGATACTTGA+CGG | + | chr1_3:12509331-12509350 | None:intergenic | 30.0% | |
| TGATAGAGTTAAAATCTCCT+TGG | + | chr1_3:12509448-12509467 | None:intergenic | 30.0% | |
| CTATTTATTGCCAATTGTCT+AGG | + | chr1_3:12509528-12509547 | None:intergenic | 30.0% | |
| TAATGTATGTATGTCTACCT+TGG | + | chr1_3:12509815-12509834 | None:intergenic | 30.0% | |
| AGAATGTGAATGCAAAACAA+AGG | + | chr1_3:12509880-12509899 | None:intergenic | 30.0% | |
| TTAATTAAGTAAATGGTCCC+CGG | - | chr1_3:12509970-12509989 | Msa0104570:intron | 30.0% | |
| TGAAAATCTAGATATTTCCG+GGG | + | chr1_3:12509990-12510009 | None:intergenic | 30.0% | |
| ! | TGTTGACGGAAAATTTTAGA+GGG | + | chr1_3:12510049-12510068 | None:intergenic | 30.0% |
| ! | ATGTTGACGGAAAATTTTAG+AGG | + | chr1_3:12510050-12510069 | None:intergenic | 30.0% |
| GTCACATTATTGTATTTGGA+AGG | - | chr1_3:12510080-12510099 | Msa0104570:intron | 30.0% | |
| ATATCAAAATCATCCCTAAC+TGG | - | chr1_3:12510210-12510229 | Msa0104570:CDS | 30.0% | |
| AGTGAATGAGACTGAAAAAT+GGG | - | chr1_3:12510311-12510330 | Msa0104570:intron | 30.0% | |
| AATGTAAAAGTAATCCTCTC+CGG | + | chr1_3:12510369-12510388 | None:intergenic | 30.0% | |
| ! | TTTGAAGTAGCATTAATCAC+TGG | + | chr1_3:12510393-12510412 | None:intergenic | 30.0% |
| ! | TGCTACTTCAAATATTGCTA+TGG | - | chr1_3:12510401-12510420 | Msa0104570:intron | 30.0% |
| AATATTGCTATGGTTGTTAC+TGG | - | chr1_3:12510411-12510430 | Msa0104570:intron | 30.0% | |
| ATGGATCGTATATATAGTGT+TGG | + | chr1_3:12510667-12510686 | None:intergenic | 30.0% | |
| ! | CTATGCTTCTTTTATTGTCT+TGG | + | chr1_3:12510883-12510902 | None:intergenic | 30.0% |
| ACAATCATCAACCATGTCAT+TGG | - | chr1_3:12509068-12509087 | Msa0104570:three_prime_UTR | 35.0% | |
| !! | AAGTGTTTTTGTCCCAATTG+AGG | + | chr1_3:12509099-12509118 | None:intergenic | 35.0% |
| AAGTCACATTGTGTCTTAGA+GGG | + | chr1_3:12509128-12509147 | None:intergenic | 35.0% | |
| GGCATCAATGAATAACAACA+AGG | - | chr1_3:12509188-12509207 | Msa0104570:three_prime_UTR | 35.0% | |
| !! | CTCTAATGTATTTTTCGGAG+AGG | + | chr1_3:12509272-12509291 | None:intergenic | 35.0% |
| CAATACCTTAGATACTTGAC+GGG | + | chr1_3:12509330-12509349 | None:intergenic | 35.0% | |
| AGTTAAAATCTCCTTGGAGA+TGG | + | chr1_3:12509442-12509461 | None:intergenic | 35.0% | |
| AATTCACAATTTCAGGAAGC+TGG | - | chr1_3:12509666-12509685 | Msa0104570:CDS | 35.0% | |
| CAATCGATAGTGTCACAATA+TGG | + | chr1_3:12509700-12509719 | None:intergenic | 35.0% | |
| CATATTGTGACACTATCGAT+TGG | - | chr1_3:12509698-12509717 | Msa0104570:CDS | 35.0% | |
| ! | GTCTAAGTGGCACATATTTT+TGG | - | chr1_3:12509720-12509739 | Msa0104570:CDS | 35.0% |
| !!! | TAAGTGGCACATATTTTTGG+TGG | - | chr1_3:12509723-12509742 | Msa0104570:CDS | 35.0% |
| !! | GACTTAGTTCTGAATGTTGA+CGG | + | chr1_3:12510063-12510082 | None:intergenic | 35.0% |
| AATTGTGTTCACATTGAGTG+GGG | + | chr1_3:12510115-12510134 | None:intergenic | 35.0% | |
| CAATTGTGTTCACATTGAGT+GGG | + | chr1_3:12510116-12510135 | None:intergenic | 35.0% | |
| TCAATTGTGTTCACATTGAG+TGG | + | chr1_3:12510117-12510136 | None:intergenic | 35.0% | |
| !! | AAATTTTGGGAAGCCAGTTA+GGG | + | chr1_3:12510226-12510245 | None:intergenic | 35.0% |
| ! | ATGTAGCTTCTTTGTTTCCA+GGG | - | chr1_3:12510280-12510299 | Msa0104570:CDS | 35.0% |
| CAGTGAATGAGACTGAAAAA+TGG | - | chr1_3:12510310-12510329 | Msa0104570:intron | 35.0% | |
| ! | TCAGGATTCACCTTTTGAAT+AGG | + | chr1_3:12510498-12510517 | None:intergenic | 35.0% |
| ATTCAAAAGGTGAATCCTGA+AGG | - | chr1_3:12510498-12510517 | Msa0104570:intron | 35.0% | |
| ATCCTGAAGGAGATATCAAA+TGG | - | chr1_3:12510511-12510530 | Msa0104570:intron | 35.0% | |
| AACCATTTGATATCTCCTTC+AGG | + | chr1_3:12510516-12510535 | None:intergenic | 35.0% | |
| AGGAGATATCAAATGGTTCT+TGG | - | chr1_3:12510518-12510537 | Msa0104570:intron | 35.0% | |
| TATCAAATGGTTCTTGGACA+AGG | - | chr1_3:12510524-12510543 | Msa0104570:intron | 35.0% | |
| ATCAAATGGTTCTTGGACAA+GGG | - | chr1_3:12510525-12510544 | Msa0104570:intron | 35.0% | |
| ACGTTAGAATGAATGTTGCT+CGG | + | chr1_3:12510598-12510617 | None:intergenic | 35.0% | |
| !!! | ACGATCCATTTTTAAGATGG+TGG | - | chr1_3:12510678-12510697 | Msa0104570:CDS | 35.0% |
| !!! | CGATCCATTTTTAAGATGGT+GGG | - | chr1_3:12510679-12510698 | Msa0104570:CDS | 35.0% |
| TTATCGAGTGAAATTCATGC+AGG | + | chr1_3:12510706-12510725 | None:intergenic | 35.0% | |
| TTGGAATGCAACATGCTTTG+TGG | + | chr1_3:12509033-12509052 | None:intergenic | 40.0% | |
| !! | TCATTGGTGTCACCTCAATT+GGG | - | chr1_3:12509084-12509103 | Msa0104570:three_prime_UTR | 40.0% |
| GAAGTCACATTGTGTCTTAG+AGG | + | chr1_3:12509129-12509148 | None:intergenic | 40.0% | |
| CCACCAACATGAATTCTCTT+AGG | + | chr1_3:12509159-12509178 | None:intergenic | 40.0% | |
| CCTAAGAGAATTCATGTTGG+TGG | - | chr1_3:12509156-12509175 | Msa0104570:three_prime_UTR | 40.0% | |
| TTAGGTGTCAACTCAGTGTT+AGG | + | chr1_3:12509494-12509513 | None:intergenic | 40.0% | |
| ! | TAACACTGAGTTGACACCTA+AGG | - | chr1_3:12509493-12509512 | Msa0104570:CDS | 40.0% |
| AGTTGACACCTAAGGCTATT+TGG | - | chr1_3:12509501-12509520 | Msa0104570:CDS | 40.0% | |
| TCGATAGTGTCACAATATGG+TGG | + | chr1_3:12509697-12509716 | None:intergenic | 40.0% | |
| !! | ACACTATCGATTGGTCTAAG+TGG | - | chr1_3:12509707-12509726 | Msa0104570:CDS | 40.0% |
| TTGCTATCAACGTGAGTCTT+TGG | + | chr1_3:12509763-12509782 | None:intergenic | 40.0% | |
| TAACGATAGCTTCATCTCCA+AGG | - | chr1_3:12509795-12509814 | Msa0104570:CDS | 40.0% | |
| ATTGTGTTCACATTGAGTGG+GGG | + | chr1_3:12510114-12510133 | None:intergenic | 40.0% | |
| !! | CAAATTTTGGGAAGCCAGTT+AGG | + | chr1_3:12510227-12510246 | None:intergenic | 40.0% |
| CTATTAGATATGGGACCTGA+TGG | - | chr1_3:12510255-12510274 | Msa0104570:CDS | 40.0% | |
| AAAGAAGCTACATGTCCATC+AGG | + | chr1_3:12510273-12510292 | None:intergenic | 40.0% | |
| ! | CATGTAGCTTCTTTGTTTCC+AGG | - | chr1_3:12510279-12510298 | Msa0104570:CDS | 40.0% |
| TTTCAGTCTCATTCACTGCA+GGG | + | chr1_3:12510308-12510327 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTCATTCACTGC+AGG | + | chr1_3:12510309-12510328 | None:intergenic | 40.0% |
| GTTTACTCTGCACTTGAGAA+AGG | - | chr1_3:12510453-12510472 | Msa0104570:intron | 40.0% | |
| CGTTAGAATGAATGTTGCTC+GGG | + | chr1_3:12510597-12510616 | None:intergenic | 40.0% | |
| AGGTCCCACCATCTTAAAAA+TGG | + | chr1_3:12510686-12510705 | None:intergenic | 40.0% | |
| GCTTTGTGGAGTGCATGAAA+GGG | + | chr1_3:12509019-12509038 | None:intergenic | 45.0% | |
| TGCTTTGTGGAGTGCATGAA+AGG | + | chr1_3:12509020-12509039 | None:intergenic | 45.0% | |
| TTGAGGTGACACCAATGACA+TGG | + | chr1_3:12509082-12509101 | None:intergenic | 45.0% | |
| !! | GTCATTGGTGTCACCTCAAT+TGG | - | chr1_3:12509083-12509102 | Msa0104570:three_prime_UTR | 45.0% |
| !! | GAGAATTCATGTTGGTGGCT+TGG | - | chr1_3:12509161-12509180 | Msa0104570:three_prime_UTR | 45.0% |
| GGAGAGGTCAGCAACATATT+TGG | + | chr1_3:12509256-12509275 | None:intergenic | 45.0% | |
| CAAGTTAACGACCATCTCCA+AGG | - | chr1_3:12509428-12509447 | Msa0104570:CDS | 45.0% | |
| GCTATTTGGCCCTAGACAAT+TGG | - | chr1_3:12509515-12509534 | Msa0104570:CDS | 45.0% | |
| TTCACATTGAGTGGGGGAAT+TGG | + | chr1_3:12510108-12510127 | None:intergenic | 45.0% | |
| TGAGACAACCCTAAGACGTT+TGG | - | chr1_3:12510173-12510192 | Msa0104570:intron | 45.0% | |
| GCTTGTGACCAAACGTCTTA+GGG | + | chr1_3:12510184-12510203 | None:intergenic | 45.0% | |
| TGCTTGTGACCAAACGTCTT+AGG | + | chr1_3:12510185-12510204 | None:intergenic | 45.0% | |
| GTAAAAGTAATCCTCTCCGG+CGG | + | chr1_3:12510366-12510385 | None:intergenic | 45.0% | |
| ! | AAGCAATATGATGGGACTGC+TGG | - | chr1_3:12510802-12510821 | Msa0104570:CDS | 45.0% |
| !! | TCATGTTGGTGGCTTGGTGA+AGG | - | chr1_3:12509167-12509186 | Msa0104570:three_prime_UTR | 50.0% |
| GGATGTGCATGTGCTAAGCA+AGG | - | chr1_3:12509209-12509228 | Msa0104570:three_prime_UTR | 50.0% | |
| ! | GGAGCATCTTGCTGTGTCTT+TGG | - | chr1_3:12509230-12509249 | Msa0104570:three_prime_UTR | 50.0% |
| !! | TTCACCGTCGTTTTGTCTCC+TGG | - | chr1_3:12509303-12509322 | Msa0104570:three_prime_UTR | 50.0% |
| ! | CTTAGATACTTGACGGGTCC+AGG | + | chr1_3:12509324-12509343 | None:intergenic | 50.0% |
| CTGGACCCGTCAAGTATCTA+AGG | - | chr1_3:12509322-12509341 | Msa0104570:three_prime_UTR | 50.0% | |
| ! | GTCTAGGGCCAAATAGCCTT+AGG | + | chr1_3:12509512-12509531 | None:intergenic | 50.0% |
| GATGATTCCCTACCAGCTGA+TGG | - | chr1_3:12510135-12510154 | Msa0104570:intron | 50.0% | |
| GCTATGGTTGTTACTGGTGC+TGG | - | chr1_3:12510417-12510436 | Msa0104570:intron | 50.0% | |
| !! | GTGCTGCTTCAAGGCTCTAT+AGG | - | chr1_3:12510547-12510566 | Msa0104570:intron | 50.0% |
| GGGTCCAGGAGACAAAACGA+CGG | + | chr1_3:12509310-12509329 | None:intergenic | 55.0% | |
| TGCTGCTCCATCAGCTGGTA+GGG | + | chr1_3:12510145-12510164 | None:intergenic | 55.0% | |
| ACATCTGCTGCTCCATCAGC+TGG | + | chr1_3:12510150-12510169 | None:intergenic | 55.0% | |
| ! | TCATTCACTGCAGGGTACCC+TGG | + | chr1_3:12510300-12510319 | None:intergenic | 55.0% |
| AAAGTAATCCTCTCCGGCGG+CGG | + | chr1_3:12510363-12510382 | None:intergenic | 55.0% | |
| !! | TGGACAAGGGTGCTGCTTCA+AGG | - | chr1_3:12510538-12510557 | Msa0104570:intron | 55.0% |
| CTGCTGCTCCATCAGCTGGT+AGG | + | chr1_3:12510146-12510165 | None:intergenic | 60.0% | |
| GAATGCACCTAAACCGCCGC+CGG | - | chr1_3:12510347-12510366 | Msa0104570:intron | 60.0% | |
| ATCCTCTCCGGCGGCGGTTT+AGG | + | chr1_3:12510357-12510376 | None:intergenic | 65.0% | |
| CACCTAAACCGCCGCCGGAG+AGG | - | chr1_3:12510352-12510371 | Msa0104570:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12508941 | 12511050 | 12508941 | ID=Msa0104570;Name=Msa0104570 |
| chr1_3 | mRNA | 12508941 | 12511050 | 12508941 | ID=Msa0104570-mRNA-1;Parent=Msa0104570;Name=Msa0104570-mRNA-1;_AED=0.22;_eAED=0.22;_QI=53|1|1|1|1|1|3|478|318 |
| chr1_3 | exon | 12508941 | 12509889 | 12508941 | ID=Msa0104570-mRNA-1:exon:5001;Parent=Msa0104570-mRNA-1 |
| chr1_3 | exon | 12510175 | 12510310 | 12510175 | ID=Msa0104570-mRNA-1:exon:5000;Parent=Msa0104570-mRNA-1 |
| chr1_3 | exon | 12510648 | 12511050 | 12510648 | ID=Msa0104570-mRNA-1:exon:4999;Parent=Msa0104570-mRNA-1 |
| chr1_3 | five_prime_UTR | 12510998 | 12511050 | 12510998 | ID=Msa0104570-mRNA-1:five_prime_utr;Parent=Msa0104570-mRNA-1 |
| chr1_3 | CDS | 12510648 | 12510997 | 12510648 | ID=Msa0104570-mRNA-1:cds;Parent=Msa0104570-mRNA-1 |
| chr1_3 | CDS | 12510175 | 12510310 | 12510175 | ID=Msa0104570-mRNA-1:cds;Parent=Msa0104570-mRNA-1 |
| chr1_3 | CDS | 12509419 | 12509889 | 12509419 | ID=Msa0104570-mRNA-1:cds;Parent=Msa0104570-mRNA-1 |
| chr1_3 | three_prime_UTR | 12508941 | 12509418 | 12508941 | ID=Msa0104570-mRNA-1:three_prime_utr;Parent=Msa0104570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
