Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823170 | XP_003617458.1 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.99e-112 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823170 | sp|Q682H0|HA22F_ARATH | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.43e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823170 | B7FNC9 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 2.86e-112 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa0823170 | 0.822194 | 2.698551e-53 | -8.615850e-47 |
| Msa0104570 | Msa0823170 | 0.800153 | 1.647528e-48 | -8.615850e-47 |
| Msa0627090 | Msa0823170 | 0.826131 | 3.210455e-54 | -8.615850e-47 |
| Msa0665160 | Msa0823170 | 0.830735 | 2.483780e-55 | -8.615850e-47 |
| Msa0741970 | Msa0823170 | 0.953180 | 4.829482e-111 | -8.615850e-47 |
| Msa0781890 | Msa0823170 | 0.839707 | 1.348849e-57 | -8.615850e-47 |
| Msa0786230 | Msa0823170 | 0.978196 | 2.542260e-145 | -8.615850e-47 |
| Msa0823170 | Msa0862170 | 0.929708 | 4.712382e-93 | -8.615850e-47 |
| Msa0823170 | Msa1060340 | 0.822935 | 1.814857e-53 | -8.615850e-47 |
| Msa0823170 | Msa1218150 | 0.803404 | 3.543018e-49 | -8.615850e-47 |
| Msa0823170 | Msa1219820 | 0.806610 | 7.564884e-50 | -8.615850e-47 |
| Msa0823170 | Msa1360930 | 0.834616 | 2.704707e-56 | -8.615850e-47 |
| Msa0823170 | Msa1401520 | 0.811546 | 6.631096e-51 | -8.615850e-47 |
| Msa0823170 | Msa1404480 | 0.848372 | 6.390898e-60 | -8.615850e-47 |
| Msa0823170 | Msa1443210 | 0.843014 | 1.818266e-58 | -8.615850e-47 |
| Msa0155180 | Msa0823170 | 0.805439 | 1.334236e-49 | -8.615850e-47 |
| Msa0182400 | Msa0823170 | 0.846455 | 2.149136e-59 | -8.615850e-47 |
| Msa0427820 | Msa0823170 | 0.850603 | 1.525939e-60 | -8.615850e-47 |
| Msa0474060 | Msa0823170 | 0.849875 | 2.442379e-60 | -8.615850e-47 |
| Msa0268100 | Msa0823170 | 0.810069 | 1.384621e-50 | -8.615850e-47 |
| Msa0518680 | Msa0823170 | 0.824851 | 6.450862e-54 | -8.615850e-47 |
| Msa0530390 | Msa0823170 | 0.831306 | 1.798820e-55 | -8.615850e-47 |
| Msa0577650 | Msa0823170 | 0.838164 | 3.382648e-57 | -8.615850e-47 |
| Msa0577740 | Msa0823170 | 0.842044 | 3.287242e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823170 | MtrunA17_Chr5g0443431 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.51e-116 | 324 |
| Msa0823170 | MtrunA17_Chr3g0097141 | 79.114 | 158 | 32 | 1 | 1 | 157 | 1 | 158 | 2.23e-94 | 270 |
| Msa0823170 | MtrunA17_Chr4g0060581 | 51.333 | 150 | 71 | 1 | 4 | 153 | 12 | 159 | 1.25e-46 | 149 |
| Msa0823170 | MtrunA17_Chr5g0416561 | 44.578 | 166 | 74 | 2 | 2 | 155 | 64 | 223 | 1.39e-40 | 136 |
| Msa0823170 | MtrunA17_Chr3g0132031 | 48.760 | 121 | 56 | 1 | 1 | 121 | 1 | 115 | 7.23e-34 | 116 |
| Msa0823170 | MtrunA17_Chr8g0386221 | 50.962 | 104 | 51 | 0 | 1 | 104 | 1 | 104 | 5.91e-33 | 112 |
| Msa0823170 | MtrunA17_Chr4g0049651 | 33.088 | 136 | 77 | 2 | 17 | 147 | 20 | 146 | 2.34e-20 | 86.7 |
| Msa0823170 | MtrunA17_Chr4g0049701 | 31.159 | 138 | 81 | 2 | 17 | 149 | 17 | 145 | 9.12e-20 | 84.0 |
| Msa0823170 | MtrunA17_Chr4g0049671 | 32.540 | 126 | 71 | 2 | 27 | 147 | 21 | 137 | 4.73e-17 | 77.0 |
| Msa0823170 | MtrunA17_Chr5g0403731 | 29.688 | 128 | 78 | 2 | 7 | 134 | 28 | 143 | 2.78e-14 | 67.0 |
| Msa0823170 | MtrunA17_Chr5g0427761 | 34.524 | 84 | 55 | 0 | 17 | 100 | 22 | 105 | 5.81e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823170 | AT2G42820.1 | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.47e-74 | 219 |
| Msa0823170 | AT1G74520.1 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0823170 | AT1G74520.2 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0823170 | AT1G69700.1 | 44.966 | 149 | 79 | 1 | 2 | 147 | 9 | 157 | 4.88e-37 | 125 |
| Msa0823170 | AT5G50720.1 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 2.23e-35 | 119 |
| Msa0823170 | AT5G62490.1 | 56.842 | 95 | 41 | 0 | 7 | 101 | 12 | 106 | 1.40e-34 | 119 |
| Msa0823170 | AT4G24960.1 | 45.669 | 127 | 68 | 1 | 8 | 134 | 8 | 133 | 4.15e-32 | 112 |
| Msa0823170 | AT4G24960.3 | 40.441 | 136 | 71 | 1 | 20 | 155 | 1 | 126 | 1.31e-29 | 105 |
| Msa0823170 | AT4G24960.2 | 41.748 | 103 | 59 | 1 | 32 | 134 | 1 | 102 | 7.63e-23 | 87.4 |
| Msa0823170 | AT4G36720.1 | 36.842 | 95 | 56 | 1 | 7 | 101 | 36 | 126 | 5.81e-16 | 72.0 |
Find 45 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAGATTAATGAAGTTT+TGG | 0.269958 | 5_3:-61820642 | None:intergenic |
| AGGACATACGTCAAGAAATT+TGG | 0.280571 | 5_3:+61821522 | Msa0823170:CDS |
| GTCAAGAAATTTGGTAACTA+TGG | 0.297751 | 5_3:+61821531 | Msa0823170:CDS |
| ACCAACAGTGGCTAACATAT+TGG | 0.311228 | 5_3:+61821252 | Msa0823170:CDS |
| GAACGTTATATTGATAGATT+TGG | 0.323087 | 5_3:+61821624 | Msa0823170:CDS |
| CCAACAGTGGCTAACATATT+GGG | 0.341811 | 5_3:+61821253 | Msa0823170:CDS |
| CAACTTACAAGGTCCTATAT+TGG | 0.344124 | 5_3:+61821309 | Msa0823170:CDS |
| ATCACTCTCTCAAATGCATC+TGG | 0.360770 | 5_3:-61821648 | None:intergenic |
| ATATCAATAGGTTTCCCATT+TGG | 0.373951 | 5_3:+61821418 | Msa0823170:intron |
| AGACATTTGGACACAACAAT+AGG | 0.378599 | 5_3:+61820704 | Msa0823170:CDS |
| ATTGCTGAACCTACCAATAT+AGG | 0.380907 | 5_3:-61821322 | None:intergenic |
| AAGCTTCATGTATGGCCAAA+TGG | 0.383376 | 5_3:-61821433 | None:intergenic |
| TGGAGCAATACTAAGACATT+TGG | 0.388072 | 5_3:+61820691 | Msa0823170:CDS |
| AGAGTTGGAGCAAAAGATTA+TGG | 0.394037 | 5_3:-61820617 | None:intergenic |
| CTTCGAGCTTTCAACTTACA+AGG | 0.426910 | 5_3:+61821298 | Msa0823170:CDS |
| AAAATCATCATGGGTGTCCT+TGG | 0.439409 | 5_3:+61820671 | Msa0823170:exon |
| AGCTTCATGTATGGCCAAAT+GGG | 0.440653 | 5_3:-61821432 | None:intergenic |
| TTCTTCTTCCCATGCCAGCT+TGG | 0.474007 | 5_3:-61821828 | None:intergenic |
| GACATTTGGACACAACAATA+GGG | 0.477953 | 5_3:+61820705 | Msa0823170:CDS |
| TCAATTTAACCAAGCTGGCA+TGG | 0.493645 | 5_3:+61821819 | Msa0823170:three_prime_UTR |
| TATTGAAAGTCCTTCAACCT+TGG | 0.507265 | 5_3:+61821226 | Msa0823170:CDS |
| TGAAGCTTGTGTTCTGCGTA+TGG | 0.521277 | 5_3:+61821448 | Msa0823170:CDS |
| TGTTGGTCATCCAAGGTTGA+AGG | 0.521506 | 5_3:-61821236 | None:intergenic |
| AGAACCTTCTTGTACTCCTC+AGG | 0.524082 | 5_3:-61821567 | None:intergenic |
| CCCAATATGTTAGCCACTGT+TGG | 0.527231 | 5_3:-61821253 | None:intergenic |
| ATGGAATCAATGTTGTATTG+TGG | 0.528844 | 5_3:-61820598 | None:intergenic |
| TTTATTCTTAATTAATCCAA+GGG | 0.530381 | 5_3:-61821999 | None:intergenic |
| CAATTTAACCAAGCTGGCAT+GGG | 0.541105 | 5_3:+61821820 | Msa0823170:three_prime_UTR |
| CAGAACACAAGCTTCATGTA+TGG | 0.542978 | 5_3:-61821441 | None:intergenic |
| TAGCCACTGTTGGTCATCCA+AGG | 0.555283 | 5_3:-61821243 | None:intergenic |
| AGGATAAAGAAGCATTACTC+CGG | 0.560010 | 5_3:-61821098 | None:intergenic |
| TTGGTACTGCCAATGTTCAA+TGG | 0.561469 | 5_3:+61821471 | Msa0823170:CDS |
| GCTTGTGTTCTGCGTATGGT+TGG | 0.576715 | 5_3:+61821452 | Msa0823170:CDS |
| GGATAAAGAAGCATTACTCC+GGG | 0.584585 | 5_3:-61821097 | None:intergenic |
| GAGCGTCAATTTAACCAAGC+TGG | 0.586351 | 5_3:+61821814 | Msa0823170:three_prime_UTR |
| TCATAGATACGCATCAATGA+GGG | 0.589923 | 5_3:+61821202 | Msa0823170:intron |
| ATCATAGATACGCATCAATG+AGG | 0.601236 | 5_3:+61821201 | Msa0823170:intron |
| TCACTCTCTCAAATGCATCT+GGG | 0.601880 | 5_3:-61821647 | None:intergenic |
| ACTTCATTAATCTCTCCACC+TGG | 0.615826 | 5_3:+61820647 | Msa0823170:five_prime_UTR |
| TAAGCTGCTCCATTGAACAT+TGG | 0.632735 | 5_3:-61821480 | None:intergenic |
| TTATCCTGAGGAGTACAAGA+AGG | 0.638050 | 5_3:+61821563 | Msa0823170:CDS |
| AATGTCTTAGTATTGCTCCA+AGG | 0.660944 | 5_3:-61820688 | None:intergenic |
| ACATATATGAGAATTATGCA+AGG | 0.691799 | 5_3:+61821502 | Msa0823170:CDS |
| CAACCTTGGATGACCAACAG+TGG | 0.691907 | 5_3:+61821240 | Msa0823170:CDS |
| TGGAAATTACAATTATCCTG+AGG | 0.710511 | 5_3:+61821551 | Msa0823170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATCTTATCTTTTTAT+TGG | + | chr5_3:61820840-61820859 | Msa0823170:intron | 10.0% |
| !!! | TAATTATCTTATCTTTTTAT+TGG | + | chr5_3:61820840-61820859 | Msa0823170:intron | 10.0% |
| !! | ATAAGATAATTATAGAAAAG+TGG | - | chr5_3:61820832-61820851 | None:intergenic | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_3:61821384-61821403 | Msa0823170:intron | 15.0% |
| !! | GCTTAATAAAAAATATCAAT+AGG | + | chr5_3:61821406-61821425 | Msa0823170:intron | 15.0% |
| !! | TAAAGATATATTTGTAACTT+TGG | - | chr5_3:61821704-61821723 | None:intergenic | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_3:61822002-61822021 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_3:61822003-61822022 | None:intergenic | 15.0% |
| !! | ATAAGATAATTATAGAAAAG+TGG | - | chr5_3:61820832-61820851 | None:intergenic | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_3:61821384-61821403 | Msa0823170:intron | 15.0% |
| !! | GCTTAATAAAAAATATCAAT+AGG | + | chr5_3:61821406-61821425 | Msa0823170:intron | 15.0% |
| !! | TAAAGATATATTTGTAACTT+TGG | - | chr5_3:61821704-61821723 | None:intergenic | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_3:61822002-61822021 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_3:61822003-61822022 | None:intergenic | 15.0% |
| !!! | TTATCTTATCTTTTTATTGG+TGG | + | chr5_3:61820843-61820862 | Msa0823170:intron | 20.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_3:61820942-61820961 | Msa0823170:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_3:61821121-61821140 | None:intergenic | 20.0% |
| !! | TCTATTTCACTTTATATTTC+AGG | + | chr5_3:61821763-61821782 | Msa0823170:intron | 20.0% |
| !!! | TTATCTTATCTTTTTATTGG+TGG | + | chr5_3:61820843-61820862 | Msa0823170:intron | 20.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_3:61820942-61820961 | Msa0823170:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_3:61821121-61821140 | None:intergenic | 20.0% |
| !! | TCTATTTCACTTTATATTTC+AGG | + | chr5_3:61821763-61821782 | Msa0823170:intron | 20.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_3:61821003-61821022 | Msa0823170:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTAAG+AGG | - | chr5_3:61821065-61821084 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_3:61821502-61821521 | Msa0823170:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_3:61821624-61821643 | Msa0823170:CDS | 25.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_3:61821003-61821022 | Msa0823170:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTAAG+AGG | - | chr5_3:61821065-61821084 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_3:61821502-61821521 | Msa0823170:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_3:61821624-61821643 | Msa0823170:CDS | 25.0% |
| ATGGAATCAATGTTGTATTG+TGG | - | chr5_3:61820601-61820620 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_3:61820635-61820654 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_3:61820645-61820664 | None:intergenic | 30.0% |
| ! | TCTTATCTTTTTATTGGTGG+TGG | + | chr5_3:61820846-61820865 | Msa0823170:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr5_3:61820891-61820910 | None:intergenic | 30.0% | |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_3:61820985-61821004 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_3:61821002-61821021 | Msa0823170:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_3:61821418-61821437 | Msa0823170:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_3:61821531-61821550 | Msa0823170:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_3:61821551-61821570 | Msa0823170:CDS | 30.0% | |
| TCAATGTTGTATTGTGGATT+TGG | - | chr5_3:61820595-61820614 | None:intergenic | 30.0% | |
| ATGGAATCAATGTTGTATTG+TGG | - | chr5_3:61820601-61820620 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_3:61820635-61820654 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_3:61820645-61820664 | None:intergenic | 30.0% |
| ! | TCTTATCTTTTTATTGGTGG+TGG | + | chr5_3:61820846-61820865 | Msa0823170:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr5_3:61820891-61820910 | None:intergenic | 30.0% | |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_3:61820985-61821004 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_3:61821002-61821021 | Msa0823170:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_3:61821418-61821437 | Msa0823170:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_3:61821531-61821550 | Msa0823170:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_3:61821551-61821570 | Msa0823170:CDS | 30.0% | |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_3:61820620-61820639 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_3:61820691-61820710 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_3:61820691-61820710 | Msa0823170:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_3:61820704-61820723 | Msa0823170:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_3:61820705-61820724 | Msa0823170:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr5_3:61820886-61820905 | None:intergenic | 35.0% | |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_3:61821021-61821040 | Msa0823170:intron | 35.0% | |
| !!! | ATCCTACTTTTTTGTGTACC+AGG | + | chr5_3:61821074-61821093 | Msa0823170:intron | 35.0% |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_3:61821101-61821120 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_3:61821201-61821220 | Msa0823170:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_3:61821202-61821221 | Msa0823170:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_3:61821226-61821245 | Msa0823170:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_3:61821309-61821328 | Msa0823170:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_3:61821313-61821332 | Msa0823170:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_3:61821325-61821344 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_3:61821522-61821541 | Msa0823170:CDS | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_3:61821983-61822002 | Msa0823170:three_prime_UTR | 35.0% |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_3:61820620-61820639 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_3:61820691-61820710 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_3:61820691-61820710 | Msa0823170:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_3:61820704-61820723 | Msa0823170:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_3:61820705-61820724 | Msa0823170:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr5_3:61820886-61820905 | None:intergenic | 35.0% | |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_3:61821021-61821040 | Msa0823170:intron | 35.0% | |
| !!! | ATCCTACTTTTTTGTGTACC+AGG | + | chr5_3:61821074-61821093 | Msa0823170:intron | 35.0% |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_3:61821101-61821120 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_3:61821201-61821220 | Msa0823170:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_3:61821202-61821221 | Msa0823170:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_3:61821226-61821245 | Msa0823170:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_3:61821309-61821328 | Msa0823170:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_3:61821313-61821332 | Msa0823170:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_3:61821325-61821344 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_3:61821522-61821541 | Msa0823170:CDS | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_3:61821983-61822002 | Msa0823170:three_prime_UTR | 35.0% |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_3:61820647-61820666 | Msa0823170:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_3:61820661-61820680 | Msa0823170:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_3:61820662-61820681 | Msa0823170:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_3:61820668-61820687 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_3:61820671-61820690 | Msa0823170:exon | 40.0% | |
| !!! | ATCTTTTTATTGGTGGTGGC+CGG | + | chr5_3:61820850-61820869 | Msa0823170:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | - | chr5_3:61820884-61820903 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr5_3:61820885-61820904 | None:intergenic | 40.0% | |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_3:61821100-61821119 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_3:61821252-61821271 | Msa0823170:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_3:61821253-61821272 | Msa0823170:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_3:61821298-61821317 | Msa0823170:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_3:61821435-61821454 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_3:61821436-61821455 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_3:61821444-61821463 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_3:61821471-61821490 | Msa0823170:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_3:61821483-61821502 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_3:61821563-61821582 | Msa0823170:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_3:61821650-61821669 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_3:61821651-61821670 | None:intergenic | 40.0% | |
| TCAATTTAACCAAGCTGGCA+TGG | + | chr5_3:61821819-61821838 | Msa0823170:three_prime_UTR | 40.0% | |
| CAATTTAACCAAGCTGGCAT+GGG | + | chr5_3:61821820-61821839 | Msa0823170:three_prime_UTR | 40.0% | |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_3:61820647-61820666 | Msa0823170:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_3:61820661-61820680 | Msa0823170:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_3:61820662-61820681 | Msa0823170:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_3:61820668-61820687 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_3:61820671-61820690 | Msa0823170:exon | 40.0% | |
| !!! | ATCTTTTTATTGGTGGTGGC+CGG | + | chr5_3:61820850-61820869 | Msa0823170:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | - | chr5_3:61820884-61820903 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr5_3:61820885-61820904 | None:intergenic | 40.0% | |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_3:61821100-61821119 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_3:61821252-61821271 | Msa0823170:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_3:61821253-61821272 | Msa0823170:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_3:61821298-61821317 | Msa0823170:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_3:61821435-61821454 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_3:61821436-61821455 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_3:61821444-61821463 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_3:61821471-61821490 | Msa0823170:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_3:61821483-61821502 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_3:61821563-61821582 | Msa0823170:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_3:61821650-61821669 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_3:61821651-61821670 | None:intergenic | 40.0% | |
| TCAATTTAACCAAGCTGGCA+TGG | + | chr5_3:61821819-61821838 | Msa0823170:three_prime_UTR | 40.0% | |
| CAATTTAACCAAGCTGGCAT+GGG | + | chr5_3:61821820-61821839 | Msa0823170:three_prime_UTR | 40.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_3:61820665-61820684 | None:intergenic | 45.0% |
| !!! | TCTTTTTATTGGTGGTGGCC+GGG | + | chr5_3:61820851-61820870 | Msa0823170:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5_3:61820913-61820932 | None:intergenic | 45.0% |
| GGCCTGGTACACAAAAAAGT+AGG | - | chr5_3:61821079-61821098 | None:intergenic | 45.0% | |
| !!! | ACTTTTTTGTGTACCAGGCC+CGG | + | chr5_3:61821079-61821098 | Msa0823170:intron | 45.0% |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_3:61821239-61821258 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_3:61821256-61821275 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_3:61821448-61821467 | Msa0823170:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_3:61821570-61821589 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_3:61821814-61821833 | Msa0823170:three_prime_UTR | 45.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_3:61820665-61820684 | None:intergenic | 45.0% |
| !!! | TCTTTTTATTGGTGGTGGCC+GGG | + | chr5_3:61820851-61820870 | Msa0823170:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5_3:61820913-61820932 | None:intergenic | 45.0% |
| GGCCTGGTACACAAAAAAGT+AGG | - | chr5_3:61821079-61821098 | None:intergenic | 45.0% | |
| !!! | ACTTTTTTGTGTACCAGGCC+CGG | + | chr5_3:61821079-61821098 | Msa0823170:intron | 45.0% |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_3:61821239-61821258 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_3:61821256-61821275 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_3:61821448-61821467 | Msa0823170:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_3:61821570-61821589 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_3:61821814-61821833 | Msa0823170:three_prime_UTR | 45.0% | |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_3:61821240-61821259 | Msa0823170:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_3:61821246-61821265 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_3:61821452-61821471 | Msa0823170:CDS | 50.0% | |
| TTCTTCTTCCCATGCCAGCT+TGG | - | chr5_3:61821831-61821850 | None:intergenic | 50.0% | |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_3:61821240-61821259 | Msa0823170:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_3:61821246-61821265 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_3:61821452-61821471 | Msa0823170:CDS | 50.0% | |
| TTCTTCTTCCCATGCCAGCT+TGG | - | chr5_3:61821831-61821850 | None:intergenic | 50.0% | |
| CCACGTGAGCTTAGCTCAGT+TGG | - | chr5_3:61820918-61820937 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+TGG | + | chr5_3:61820915-61820934 | Msa0823170:intron | 55.0% | |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_3:61821095-61821114 | None:intergenic | 55.0% |
| CCACGTGAGCTTAGCTCAGT+TGG | - | chr5_3:61820918-61820937 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+TGG | + | chr5_3:61820915-61820934 | Msa0823170:intron | 55.0% | |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_3:61821095-61821114 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCGAATCC+CGG | - | chr5_3:61820872-61820891 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAATCC+CGG | - | chr5_3:61820872-61820891 | None:intergenic | 60.0% | |
| GGTGGCCGGGATTCGAACCC+CGG | + | chr5_3:61820864-61820883 | Msa0823170:intron | 70.0% | |
| GGTGGCCGGGATTCGAACCC+CGG | + | chr5_3:61820864-61820883 | Msa0823170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 61820593 | 61822025 | 61820593 | ID=Msa0823170;Name=Msa0823170 |
| chr5_3 | mRNA | 61820593 | 61822025 | 61820593 | ID=Msa0823170-mRNA-1;Parent=Msa0823170;Name=Msa0823170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=87|1|1|1|0.5|0.4|5|214|157 |
| chr5_3 | exon | 61820593 | 61820726 | 61820593 | ID=Msa0823170-mRNA-1:exon:19108;Parent=Msa0823170-mRNA-1 |
| chr5_3 | exon | 61821096 | 61821122 | 61821096 | ID=Msa0823170-mRNA-1:exon:19109;Parent=Msa0823170-mRNA-1 |
| chr5_3 | exon | 61821208 | 61821330 | 61821208 | ID=Msa0823170-mRNA-1:exon:19110;Parent=Msa0823170-mRNA-1 |
| chr5_3 | exon | 61821428 | 61821677 | 61821428 | ID=Msa0823170-mRNA-1:exon:19111;Parent=Msa0823170-mRNA-1 |
| chr5_3 | exon | 61821785 | 61822025 | 61821785 | ID=Msa0823170-mRNA-1:exon:19112;Parent=Msa0823170-mRNA-1 |
| chr5_3 | five_prime_UTR | 61820593 | 61820679 | 61820593 | ID=Msa0823170-mRNA-1:five_prime_utr;Parent=Msa0823170-mRNA-1 |
| chr5_3 | CDS | 61820680 | 61820726 | 61820680 | ID=Msa0823170-mRNA-1:cds;Parent=Msa0823170-mRNA-1 |
| chr5_3 | CDS | 61821096 | 61821122 | 61821096 | ID=Msa0823170-mRNA-1:cds;Parent=Msa0823170-mRNA-1 |
| chr5_3 | CDS | 61821208 | 61821330 | 61821208 | ID=Msa0823170-mRNA-1:cds;Parent=Msa0823170-mRNA-1 |
| chr5_3 | CDS | 61821428 | 61821677 | 61821428 | ID=Msa0823170-mRNA-1:cds;Parent=Msa0823170-mRNA-1 |
| chr5_3 | CDS | 61821785 | 61821811 | 61821785 | ID=Msa0823170-mRNA-1:cds;Parent=Msa0823170-mRNA-1 |
| chr5_3 | three_prime_UTR | 61821812 | 61822025 | 61821812 | ID=Msa0823170-mRNA-1:three_prime_utr;Parent=Msa0823170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
