Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801360 | XP_003612502.1 | 95.131 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 8.63e-160 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801360 | G7K428 | 95.131 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 4.12e-160 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0801360 | 0.835986 | 1.219129e-56 | -8.615850e-47 |
| Msa0035400 | Msa0801360 | 0.847472 | 1.131865e-59 | -8.615850e-47 |
| Msa0042980 | Msa0801360 | -0.800180 | 1.626707e-48 | -8.615850e-47 |
| Msa0044710 | Msa0801360 | 0.812918 | 3.328493e-51 | -8.615850e-47 |
| Msa0064550 | Msa0801360 | 0.821349 | 4.232222e-53 | -8.615850e-47 |
| Msa0067150 | Msa0801360 | 0.818933 | 1.513585e-52 | -8.615850e-47 |
| Msa0105700 | Msa0801360 | 0.800349 | 1.502818e-48 | -8.615850e-47 |
| Msa0109490 | Msa0801360 | 0.817717 | 2.853224e-52 | -8.615850e-47 |
| Msa0111310 | Msa0801360 | 0.806730 | 7.136253e-50 | -8.615850e-47 |
| Msa0617830 | Msa0801360 | 0.827690 | 1.360682e-54 | -8.615850e-47 |
| Msa0628100 | Msa0801360 | 0.825775 | 3.899149e-54 | -8.615850e-47 |
| Msa0629440 | Msa0801360 | -0.803546 | 3.310671e-49 | -8.615850e-47 |
| Msa0640380 | Msa0801360 | 0.818323 | 2.081287e-52 | -8.615850e-47 |
| Msa0656680 | Msa0801360 | 0.809897 | 1.507830e-50 | -8.615850e-47 |
| Msa0659890 | Msa0801360 | 0.803814 | 2.913160e-49 | -8.615850e-47 |
| Msa0661890 | Msa0801360 | 0.812465 | 4.181501e-51 | -8.615850e-47 |
| Msa0667070 | Msa0801360 | -0.814684 | 1.359099e-51 | -8.615850e-47 |
| Msa0672120 | Msa0801360 | 0.815269 | 1.008120e-51 | -8.615850e-47 |
| Msa0676100 | Msa0801360 | 0.805378 | 1.373939e-49 | -8.615850e-47 |
| Msa0678820 | Msa0801360 | 0.816403 | 5.629643e-52 | -8.615850e-47 |
| Msa0684850 | Msa0801360 | 0.801996 | 6.918223e-49 | -8.615850e-47 |
| Msa0704730 | Msa0801360 | 0.826495 | 2.629225e-54 | -8.615850e-47 |
| Msa0705420 | Msa0801360 | 0.822845 | 1.904903e-53 | -8.615850e-47 |
| Msa0706600 | Msa0801360 | 0.819034 | 1.435690e-52 | -8.615850e-47 |
| Msa0709660 | Msa0801360 | 0.811050 | 8.500075e-51 | -8.615850e-47 |
| Msa0714340 | Msa0801360 | 0.822222 | 2.659280e-53 | -8.615850e-47 |
| Msa0714380 | Msa0801360 | 0.814738 | 1.322356e-51 | -8.615850e-47 |
| Msa0715680 | Msa0801360 | 0.810833 | 9.467649e-51 | -8.615850e-47 |
| Msa0746980 | Msa0801360 | 0.817256 | 3.623041e-52 | -8.615850e-47 |
| Msa0755080 | Msa0801360 | 0.800790 | 1.221907e-48 | -8.615850e-47 |
| Msa0756310 | Msa0801360 | 0.838798 | 2.321985e-57 | -8.615850e-47 |
| Msa0759970 | Msa0801360 | 0.883034 | 6.313566e-71 | -8.615850e-47 |
| Msa0795920 | Msa0801360 | 0.801495 | 8.764951e-49 | -8.615850e-47 |
| Msa0801360 | Msa0818440 | 0.841761 | 3.906412e-58 | -8.615850e-47 |
| Msa0801360 | Msa0818550 | 0.838123 | 3.465952e-57 | -8.615850e-47 |
| Msa0801360 | Msa0828570 | 0.836809 | 7.528289e-57 | -8.615850e-47 |
| Msa0801360 | Msa0834450 | 0.804410 | 2.189897e-49 | -8.615850e-47 |
| Msa0801360 | Msa0835730 | 0.815698 | 8.090650e-52 | -8.615850e-47 |
| Msa0801360 | Msa0839830 | 0.996016 | 1.974091e-222 | -8.615850e-47 |
| Msa0801360 | Msa0860920 | 0.804654 | 1.947760e-49 | -8.615850e-47 |
| Msa0801360 | Msa0877890 | 0.813091 | 3.050900e-51 | -8.615850e-47 |
| Msa0801360 | Msa0878880 | 0.832208 | 1.077761e-55 | -8.615850e-47 |
| Msa0801360 | Msa0893350 | 0.806418 | 8.304438e-50 | -8.615850e-47 |
| Msa0801360 | Msa0898860 | 0.841524 | 4.509682e-58 | -8.615850e-47 |
| Msa0801360 | Msa0928030 | 0.843068 | 1.758947e-58 | -8.615850e-47 |
| Msa0801360 | Msa0944550 | 0.843405 | 1.429881e-58 | -8.615850e-47 |
| Msa0801360 | Msa0964430 | 0.835151 | 1.982274e-56 | -8.615850e-47 |
| Msa0801360 | Msa0982270 | 0.828079 | 1.097180e-54 | -8.615850e-47 |
| Msa0801360 | Msa1012920 | 0.816929 | 4.292101e-52 | -8.615850e-47 |
| Msa0801360 | Msa1031810 | 0.831616 | 1.508858e-55 | -8.615850e-47 |
| Msa0801360 | Msa1054410 | 0.827349 | 1.642951e-54 | -8.615850e-47 |
| Msa0801360 | Msa1070850 | 0.859427 | 4.168531e-63 | -8.615850e-47 |
| Msa0801360 | Msa1075590 | 0.802496 | 5.458697e-49 | -8.615850e-47 |
| Msa0801360 | Msa1079730 | -0.836833 | 7.421639e-57 | -8.615850e-47 |
| Msa0801360 | Msa1118750 | 0.827648 | 1.393244e-54 | -8.615850e-47 |
| Msa0801360 | Msa1129210 | 0.827285 | 1.702461e-54 | -8.615850e-47 |
| Msa0801360 | Msa1141250 | -0.820436 | 6.865150e-53 | -8.615850e-47 |
| Msa0801360 | Msa1149750 | 0.813355 | 2.669419e-51 | -8.615850e-47 |
| Msa0801360 | Msa1158670 | 0.832305 | 1.019809e-55 | -8.615850e-47 |
| Msa0801360 | Msa1162980 | 0.827300 | 1.687889e-54 | -8.615850e-47 |
| Msa0801360 | Msa1168040 | -0.834714 | 2.555255e-56 | -8.615850e-47 |
| Msa0801360 | Msa1172930 | 0.800476 | 1.416041e-48 | -8.615850e-47 |
| Msa0801360 | Msa1174870 | 0.822254 | 2.613924e-53 | -8.615850e-47 |
| Msa0801360 | Msa1180050 | 0.808049 | 3.748823e-50 | -8.615850e-47 |
| Msa0801360 | Msa1187520 | 0.875950 | 2.055796e-68 | -8.615850e-47 |
| Msa0801360 | Msa1204600 | -0.814856 | 1.244940e-51 | -8.615850e-47 |
| Msa0801360 | Msa1212760 | 0.877765 | 4.834497e-69 | -8.615850e-47 |
| Msa0801360 | Msa1212980 | 0.850717 | 1.417607e-60 | -8.615850e-47 |
| Msa0801360 | Msa1217810 | 0.800215 | 1.599671e-48 | -8.615850e-47 |
| Msa0801360 | Msa1232270 | 0.850364 | 1.781502e-60 | -8.615850e-47 |
| Msa0801360 | Msa1234690 | 0.809167 | 2.162963e-50 | -8.615850e-47 |
| Msa0801360 | Msa1234730 | 0.806081 | 9.783015e-50 | -8.615850e-47 |
| Msa0801360 | Msa1241820 | 0.878117 | 3.638764e-69 | -8.615850e-47 |
| Msa0801360 | Msa1241990 | 0.801594 | 8.363775e-49 | -8.615850e-47 |
| Msa0801360 | Msa1260130 | 0.854434 | 1.233981e-61 | -8.615850e-47 |
| Msa0801360 | Msa1270770 | 0.805677 | 1.189059e-49 | -8.615850e-47 |
| Msa0801360 | Msa1282920 | 0.867378 | 1.430698e-65 | -8.615850e-47 |
| Msa0801360 | Msa1292730 | 0.814654 | 1.379847e-51 | -8.615850e-47 |
| Msa0801360 | Msa1296880 | 0.805698 | 1.177307e-49 | -8.615850e-47 |
| Msa0801360 | Msa1300050 | 0.834638 | 2.669032e-56 | -8.615850e-47 |
| Msa0801360 | Msa1307740 | 0.825395 | 4.798946e-54 | -8.615850e-47 |
| Msa0801360 | Msa1313050 | 0.848269 | 6.825038e-60 | -8.615850e-47 |
| Msa0801360 | Msa1315110 | 0.807352 | 5.271567e-50 | -8.615850e-47 |
| Msa0801360 | Msa1322190 | 0.818478 | 1.919425e-52 | -8.615850e-47 |
| Msa0801360 | Msa1354090 | 0.825909 | 3.625447e-54 | -8.615850e-47 |
| Msa0801360 | Msa1378470 | 0.828428 | 9.038844e-55 | -8.615850e-47 |
| Msa0801360 | Msa1391490 | 0.816762 | 4.678457e-52 | -8.615850e-47 |
| Msa0801360 | Msa1395440 | 0.825206 | 5.320292e-54 | -8.615850e-47 |
| Msa0801360 | Msa1397970 | 0.800334 | 1.513297e-48 | -8.615850e-47 |
| Msa0801360 | Msa1398800 | 0.819336 | 1.225006e-52 | -8.615850e-47 |
| Msa0801360 | Msa1421870 | 0.824243 | 8.968201e-54 | -8.615850e-47 |
| Msa0801360 | Msa1427830 | 0.826824 | 2.194816e-54 | -8.615850e-47 |
| Msa0801360 | Msa1432790 | 0.804824 | 1.794146e-49 | -8.615850e-47 |
| Msa0801360 | Msa1434240 | 0.823837 | 1.117161e-53 | -8.615850e-47 |
| Msa0801360 | Msa1434660 | 0.803779 | 2.962376e-49 | -8.615850e-47 |
| Msa0801360 | Msa1439530 | 0.806980 | 6.320694e-50 | -8.615850e-47 |
| Msa0801360 | Msa1450020 | 0.821913 | 3.135490e-53 | -8.615850e-47 |
| Msa0801360 | Msa1454110 | 0.813419 | 2.584191e-51 | -8.615850e-47 |
| Msa0801360 | Msa1465960 | 0.811442 | 6.985974e-51 | -8.615850e-47 |
| Msa0129360 | Msa0801360 | 0.831209 | 1.899919e-55 | -8.615850e-47 |
| Msa0136390 | Msa0801360 | 0.803724 | 3.041298e-49 | -8.615850e-47 |
| Msa0142420 | Msa0801360 | 0.820488 | 6.679280e-53 | -8.615850e-47 |
| Msa0154270 | Msa0801360 | 0.824436 | 8.078553e-54 | -8.615850e-47 |
| Msa0155610 | Msa0801360 | 0.826158 | 3.161951e-54 | -8.615850e-47 |
| Msa0176040 | Msa0801360 | 0.804472 | 2.124935e-49 | -8.615850e-47 |
| Msa0178350 | Msa0801360 | 0.804498 | 2.098642e-49 | -8.615850e-47 |
| Msa0178990 | Msa0801360 | 0.805587 | 1.242314e-49 | -8.615850e-47 |
| Msa0182930 | Msa0801360 | 0.803156 | 3.987594e-49 | -8.615850e-47 |
| Msa0183370 | Msa0801360 | 0.806592 | 7.632873e-50 | -8.615850e-47 |
| Msa0197180 | Msa0801360 | 0.809105 | 2.230756e-50 | -8.615850e-47 |
| Msa0198440 | Msa0801360 | 0.831654 | 1.476880e-55 | -8.615850e-47 |
| Msa0200840 | Msa0801360 | 0.804817 | 1.800357e-49 | -8.615850e-47 |
| Msa0200870 | Msa0801360 | 0.805326 | 1.408698e-49 | -8.615850e-47 |
| Msa0222340 | Msa0801360 | 0.805548 | 1.266062e-49 | -8.615850e-47 |
| Msa0225880 | Msa0801360 | 0.820765 | 5.769676e-53 | -8.615850e-47 |
| Msa0376340 | Msa0801360 | 0.817170 | 3.788003e-52 | -8.615850e-47 |
| Msa0377280 | Msa0801360 | 0.826113 | 3.242179e-54 | -8.615850e-47 |
| Msa0379410 | Msa0801360 | 0.816305 | 5.923187e-52 | -8.615850e-47 |
| Msa0388840 | Msa0801360 | 0.849449 | 3.210028e-60 | -8.615850e-47 |
| Msa0389810 | Msa0801360 | 0.826269 | 2.975882e-54 | -8.615850e-47 |
| Msa0401340 | Msa0801360 | 0.803554 | 3.297669e-49 | -8.615850e-47 |
| Msa0404690 | Msa0801360 | 0.815450 | 9.189781e-52 | -8.615850e-47 |
| Msa0412190 | Msa0801360 | 0.840826 | 6.882611e-58 | -8.615850e-47 |
| Msa0418430 | Msa0801360 | 0.831108 | 2.012430e-55 | -8.615850e-47 |
| Msa0419620 | Msa0801360 | -0.801938 | 7.110306e-49 | -8.615850e-47 |
| Msa0435010 | Msa0801360 | 0.824335 | 8.534437e-54 | -8.615850e-47 |
| Msa0448120 | Msa0801360 | 0.808893 | 2.475624e-50 | -8.615850e-47 |
| Msa0462590 | Msa0801360 | 0.847715 | 9.705726e-60 | -8.615850e-47 |
| Msa0465800 | Msa0801360 | 0.838640 | 2.550981e-57 | -8.615850e-47 |
| Msa0468130 | Msa0801360 | 0.823708 | 1.197729e-53 | -8.615850e-47 |
| Msa0472740 | Msa0801360 | 0.848631 | 5.418262e-60 | -8.615850e-47 |
| Msa0475240 | Msa0801360 | 0.840101 | 1.065175e-57 | -8.615850e-47 |
| Msa0479100 | Msa0801360 | 0.806706 | 7.219940e-50 | -8.615850e-47 |
| Msa0240780 | Msa0801360 | 0.820396 | 7.011716e-53 | -8.615850e-47 |
| Msa0242260 | Msa0801360 | -0.805457 | 1.322963e-49 | -8.615850e-47 |
| Msa0243470 | Msa0801360 | 0.822327 | 2.513061e-53 | -8.615850e-47 |
| Msa0260470 | Msa0801360 | 0.822985 | 1.766701e-53 | -8.615850e-47 |
| Msa0278670 | Msa0801360 | 0.832663 | 8.310976e-56 | -8.615850e-47 |
| Msa0281270 | Msa0801360 | 0.813156 | 2.951886e-51 | -8.615850e-47 |
| Msa0281940 | Msa0801360 | 0.836624 | 8.389311e-57 | -8.615850e-47 |
| Msa0282170 | Msa0801360 | 0.834339 | 3.172820e-56 | -8.615850e-47 |
| Msa0304110 | Msa0801360 | 0.819850 | 9.351012e-53 | -8.615850e-47 |
| Msa0307470 | Msa0801360 | 0.829853 | 4.080516e-55 | -8.615850e-47 |
| Msa0309550 | Msa0801360 | 0.809910 | 1.497973e-50 | -8.615850e-47 |
| Msa0316750 | Msa0801360 | 0.804034 | 2.622397e-49 | -8.615850e-47 |
| Msa0318070 | Msa0801360 | 0.836050 | 1.174198e-56 | -8.615850e-47 |
| Msa0320440 | Msa0801360 | 0.801831 | 7.479609e-49 | -8.615850e-47 |
| Msa0341190 | Msa0801360 | 0.827952 | 1.177029e-54 | -8.615850e-47 |
| Msa0347610 | Msa0801360 | 0.820139 | 8.033434e-53 | -8.615850e-47 |
| Msa0358290 | Msa0801360 | 0.812259 | 4.638344e-51 | -8.615850e-47 |
| Msa0511720 | Msa0801360 | -0.805944 | 1.045211e-49 | -8.615850e-47 |
| Msa0516160 | Msa0801360 | 0.823391 | 1.420456e-53 | -8.615850e-47 |
| Msa0530950 | Msa0801360 | 0.833421 | 5.385465e-56 | -8.615850e-47 |
| Msa0540070 | Msa0801360 | 0.801865 | 7.359066e-49 | -8.615850e-47 |
| Msa0543900 | Msa0801360 | 0.822754 | 1.999655e-53 | -8.615850e-47 |
| Msa0568240 | Msa0801360 | 0.803958 | 2.718360e-49 | -8.615850e-47 |
| Msa0570330 | Msa0801360 | 0.835130 | 2.007358e-56 | -8.615850e-47 |
| Msa0576600 | Msa0801360 | 0.816800 | 4.588865e-52 | -8.615850e-47 |
| Msa0577120 | Msa0801360 | 0.849161 | 3.861757e-60 | -8.615850e-47 |
| Msa0578730 | Msa0801360 | 0.801867 | 7.353874e-49 | -8.615850e-47 |
| Msa0593810 | Msa0801360 | 0.830991 | 2.149323e-55 | -8.615850e-47 |
| Msa0599770 | Msa0801360 | 0.801078 | 1.066989e-48 | -8.615850e-47 |
| Msa0601920 | Msa0801360 | -0.802218 | 6.227308e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801360 | MtrunA17_Chr5g0408291 | 95.131 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 7.94e-164 | 454 |
| Msa0801360 | MtrunA17_Chr4g0034241 | 44.762 | 210 | 107 | 3 | 64 | 267 | 56 | 262 | 1.17e-55 | 179 |
| Msa0801360 | MtrunA17_Chr4g0042851 | 38.983 | 177 | 94 | 3 | 95 | 265 | 123 | 291 | 8.26e-40 | 139 |
| Msa0801360 | MtrunA17_Chr3g0089821 | 41.429 | 70 | 27 | 1 | 198 | 267 | 8 | 63 | 9.20e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801360 | AT4G19390.1 | 65.746 | 181 | 62 | 0 | 87 | 267 | 93 | 273 | 1.84e-83 | 251 |
| Msa0801360 | AT4G19390.2 | 65.698 | 172 | 59 | 0 | 96 | 267 | 14 | 185 | 2.03e-79 | 238 |
| Msa0801360 | AT5G13720.1 | 49.198 | 187 | 79 | 4 | 92 | 267 | 80 | 261 | 2.34e-53 | 174 |
Find 57 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATGGTGTTATCGTAAA+TGG | 0.175867 | 5_3:+15156921 | None:intergenic |
| TGTTGGGATATAAGAGTTTC+AGG | 0.199603 | 5_3:-15156845 | Msa0801360:CDS |
| TCTGATAGATCAAATCTATT+TGG | 0.202531 | 5_3:-15155086 | Msa0801360:CDS |
| TTAAACATGTATGCAAATTA+AGG | 0.228466 | 5_3:+15154719 | None:intergenic |
| CCGCTTGTTGCTTCCAATTC+GGG | 0.241751 | 5_3:-15156753 | Msa0801360:CDS |
| TGTCGGTTTCTTGCTATTCT+TGG | 0.241873 | 5_3:-15156201 | Msa0801360:CDS |
| ATTCTGTACATATTAATATT+AGG | 0.264478 | 5_3:-15154607 | Msa0801360:three_prime_UTR |
| GAGAGTCAAGGTTGTTGATT+TGG | 0.287553 | 5_3:+15156987 | None:intergenic |
| GCCGCTTGTTGCTTCCAATT+CGG | 0.314099 | 5_3:-15156754 | Msa0801360:CDS |
| TGAAATATGTTGCATGTCTT+AGG | 0.315083 | 5_3:-15154583 | Msa0801360:three_prime_UTR |
| GGAACGGTGATGCTAGTCTT+TGG | 0.339539 | 5_3:-15155176 | Msa0801360:CDS |
| AACAGAATCAAAACCCGAAT+TGG | 0.359828 | 5_3:+15156740 | None:intergenic |
| CTTCTCAGGAACGACCAAAA+TGG | 0.370797 | 5_3:-15154937 | Msa0801360:intron |
| CCTGAGAAAGTTTCATGGTT+GGG | 0.381029 | 5_3:+15156958 | None:intergenic |
| GTTTGGTGCCACTAGTTGTT+TGG | 0.381707 | 5_3:+15157112 | None:intergenic |
| TGATTCTGTTGTATCTCATC+AGG | 0.392515 | 5_3:-15156727 | Msa0801360:CDS |
| AATTCTATATTCAGCTCATA+TGG | 0.410293 | 5_3:-15156882 | Msa0801360:CDS |
| ATTTGGCTTATTCACTTTGA+AGG | 0.417143 | 5_3:-15155069 | Msa0801360:intron |
| TATTCAGCTCATATGGCAAA+AGG | 0.425103 | 5_3:-15156875 | Msa0801360:CDS |
| ATAGTGATGCTGCTTCTGAT+TGG | 0.427966 | 5_3:-15154866 | Msa0801360:CDS |
| CAATGCCTGAGAAAGTTTCA+TGG | 0.433779 | 5_3:+15156953 | None:intergenic |
| GGCAAAAGGGTCTCTGTGTT+GGG | 0.437813 | 5_3:-15156861 | Msa0801360:CDS |
| TCTATGCCTTCTAACTTCCC+TGG | 0.450735 | 5_3:+15156699 | None:intergenic |
| GAGATGCCAGGGAAGTTAGA+AGG | 0.458831 | 5_3:-15156705 | Msa0801360:CDS |
| TCATCACTCATGAGAATGTA+AGG | 0.461535 | 5_3:-15154693 | Msa0801360:three_prime_UTR |
| CATGAAACTTTCTCAGGCAT+TGG | 0.473115 | 5_3:-15156952 | Msa0801360:CDS |
| TTTGTTTGACAGAAGTAAGA+AGG | 0.477435 | 5_3:-15154843 | Msa0801360:CDS |
| TGGCAAAAGGGTCTCTGTGT+TGG | 0.477475 | 5_3:-15156862 | Msa0801360:CDS |
| TGTAGGTGATTTATAGATGT+CGG | 0.486045 | 5_3:-15156218 | Msa0801360:intron |
| TGACAGTGAATTAAAGATGA+TGG | 0.495193 | 5_3:+15156906 | None:intergenic |
| CACTATCACATGACCAACCT+TGG | 0.497716 | 5_3:+15154883 | None:intergenic |
| CCCAACCATGAAACTTTCTC+AGG | 0.502486 | 5_3:-15156958 | Msa0801360:exon |
| TTTGCTGTCCAAGCTGAATG+AGG | 0.509196 | 5_3:-15154750 | Msa0801360:CDS |
| TTAATTAGCCTCATTCAGCT+TGG | 0.510184 | 5_3:+15154742 | None:intergenic |
| CAAATCCACAGGAGTTTGAA+TGG | 0.513144 | 5_3:+15154817 | None:intergenic |
| ATCAATTCTATGCTTCATCA+AGG | 0.516481 | 5_3:-15156157 | Msa0801360:intron |
| GCCTGAGAAAGTTTCATGGT+TGG | 0.517051 | 5_3:+15156957 | None:intergenic |
| GCAATTGAATTACTTTACTA+CGG | 0.524763 | 5_3:+15155523 | None:intergenic |
| AATAGATTTGATCTATCAGA+AGG | 0.529196 | 5_3:+15155089 | None:intergenic |
| ATTCAGCTCATATGGCAAAA+GGG | 0.535020 | 5_3:-15156874 | Msa0801360:CDS |
| GTGATGCTAGTCTTTGGAAT+GGG | 0.541127 | 5_3:-15155170 | Msa0801360:CDS |
| TATCAGTGTCAAACACAAGA+TGG | 0.541440 | 5_3:+15157059 | None:intergenic |
| GAAGCAACAAGCGGCGATGA+CGG | 0.551159 | 5_3:+15156762 | None:intergenic |
| AAGTTAGAAGGCATAGAAGA+AGG | 0.553417 | 5_3:-15156693 | Msa0801360:CDS |
| CAGAAGCATAGCAAATCCAC+AGG | 0.569222 | 5_3:+15154806 | None:intergenic |
| GGTGATGCTAGTCTTTGGAA+TGG | 0.578084 | 5_3:-15155171 | Msa0801360:CDS |
| AAAAGACTCTGCAACAAATG+TGG | 0.581983 | 5_3:+15155563 | None:intergenic |
| CAATTGCTGATAGAAGCTCT+TGG | 0.584191 | 5_3:-15155507 | Msa0801360:intron |
| GTTGGGATTTCAGAGAGTCA+AGG | 0.603072 | 5_3:+15156975 | None:intergenic |
| CATAGAAGAAGGCATTGAGA+AGG | 0.605938 | 5_3:-15156682 | Msa0801360:intron |
| AATGAACTGAAAACCAAGGT+TGG | 0.611400 | 5_3:-15154896 | Msa0801360:CDS |
| AATTCTCTCCAAACAACTAG+TGG | 0.627133 | 5_3:-15157120 | Msa0801360:five_prime_UTR |
| GGCTACCATTCAAACTCCTG+TGG | 0.627628 | 5_3:-15154822 | Msa0801360:CDS |
| TATCTCATCAGGAGATGCCA+GGG | 0.638918 | 5_3:-15156716 | Msa0801360:CDS |
| CCCGAATTGGAAGCAACAAG+CGG | 0.640431 | 5_3:+15156753 | None:intergenic |
| TGGCACCAAACCAAAGACAA+AGG | 0.677264 | 5_3:-15157100 | Msa0801360:five_prime_UTR |
| AGTGAATGAACTGAAAACCA+AGG | 0.699304 | 5_3:-15154900 | Msa0801360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATAACAAACAATTAA+AGG | + | chr5_3:15155381-15155400 | None:intergenic | 15.0% |
| !!! | GTCTTGTTTTTTTTTTTTTT+TGG | + | chr5_3:15155586-15155605 | None:intergenic | 15.0% |
| !!! | AACAAATTATACAAACTTTT+AGG | + | chr5_3:15156213-15156232 | None:intergenic | 15.0% |
| !! | ATTCTGTACATATTAATATT+AGG | - | chr5_3:15157065-15157084 | Msa0801360:five_prime_UTR | 15.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | - | chr5_3:15155149-15155168 | Msa0801360:CDS | 20.0% |
| !!! | TCTATGAATAGTTTTGAATT+TGG | - | chr5_3:15155398-15155417 | Msa0801360:intron | 20.0% |
| !!! | AGATTTGCTTAACTAAATTT+GGG | + | chr5_3:15155862-15155881 | None:intergenic | 20.0% |
| !! | AATTCTTCATATAATCAACT+TGG | - | chr5_3:15156264-15156283 | Msa0801360:intron | 20.0% |
| !!! | GTTTTTATATTCAACCATTT+TGG | + | chr5_3:15156752-15156771 | None:intergenic | 20.0% |
| !! | TTAAACATGTATGCAAATTA+AGG | + | chr5_3:15156956-15156975 | None:intergenic | 20.0% |
| ! | AATTCTATATTCAGCTCATA+TGG | - | chr5_3:15154790-15154809 | Msa0801360:CDS | 25.0% |
| !!! | GCTGTTTTAAGTAGTTAATT+AGG | - | chr5_3:15155121-15155140 | Msa0801360:CDS | 25.0% |
| !!! | TTGTAATCATTGGTTTGATT+TGG | - | chr5_3:15155309-15155328 | Msa0801360:intron | 25.0% |
| !! | TCACAAAAGCATACTATTAA+AGG | + | chr5_3:15155631-15155650 | None:intergenic | 25.0% |
| !! | AATAGTATGCTTTTGTGATT+TGG | - | chr5_3:15155633-15155652 | Msa0801360:intron | 25.0% |
| ! | TATGATAGCATATTAGAATC+TGG | + | chr5_3:15155724-15155743 | None:intergenic | 25.0% |
| !! | GAGATTTGCTTAACTAAATT+TGG | + | chr5_3:15155863-15155882 | None:intergenic | 25.0% |
| ! | TTGAGAAAGTGAATAATCTT+CGG | + | chr5_3:15155980-15155999 | None:intergenic | 25.0% |
| ! | ATTATTCACTTTCTCAAACT+GGG | - | chr5_3:15155983-15156002 | Msa0801360:intron | 25.0% |
| ! | ATTATTCAATTTGACATGCA+GGG | - | chr5_3:15156084-15156103 | Msa0801360:intron | 25.0% |
| ! | GCAATTGAATTACTTTACTA+CGG | + | chr5_3:15156152-15156171 | None:intergenic | 25.0% |
| !!! | GTTAGACCTAAATTTTAACA+CGG | + | chr5_3:15156316-15156335 | None:intergenic | 25.0% |
| ! | AATAGATTTGATCTATCAGA+AGG | + | chr5_3:15156586-15156605 | None:intergenic | 25.0% |
| ! | TCTGATAGATCAAATCTATT+TGG | - | chr5_3:15156586-15156605 | Msa0801360:intron | 25.0% |
| ! | ATTTTCCTTTGTCTTTGGTT+TGG | + | chr5_3:15154580-15154599 | None:intergenic | 30.0% |
| ! | GATGAATTTTCCTTTGTCTT+TGG | + | chr5_3:15154585-15154604 | None:intergenic | 30.0% |
| TGACAGTGAATTAAAGATGA+TGG | + | chr5_3:15154769-15154788 | None:intergenic | 30.0% | |
| TTCTTCTTCGTTGTAATCAT+TGG | - | chr5_3:15155299-15155318 | Msa0801360:intron | 30.0% | |
| ! | GTTTTTCTGATGTATTGTGT+AGG | - | chr5_3:15155437-15155456 | Msa0801360:intron | 30.0% |
| TGTAGGTGATTTATAGATGT+CGG | - | chr5_3:15155454-15155473 | Msa0801360:intron | 30.0% | |
| !! | TTGCTATTCTTGGAGTTTTT+GGG | - | chr5_3:15155481-15155500 | Msa0801360:intron | 30.0% |
| ATCAATTCTATGCTTCATCA+AGG | - | chr5_3:15155515-15155534 | Msa0801360:CDS | 30.0% | |
| ACTGAATAGTAACTACAAGT+GGG | - | chr5_3:15155656-15155675 | Msa0801360:intron | 30.0% | |
| ! | ACTCTAAAAGCTATCTCATA+TGG | + | chr5_3:15155824-15155843 | None:intergenic | 30.0% |
| GATTATTCACTTTCTCAAAC+TGG | - | chr5_3:15155982-15156001 | Msa0801360:intron | 30.0% | |
| CATTATTCAATTTGACATGC+AGG | - | chr5_3:15156083-15156102 | Msa0801360:intron | 30.0% | |
| !!! | ATTTGTTGCAGAGTCTTTTT+TGG | - | chr5_3:15156113-15156132 | Msa0801360:intron | 30.0% |
| !!! | TTTGTTGCAGAGTCTTTTTT+GGG | - | chr5_3:15156114-15156133 | Msa0801360:intron | 30.0% |
| CTGATACCGTGTTAAAATTT+AGG | - | chr5_3:15156307-15156326 | Msa0801360:intron | 30.0% | |
| GTTAGGCTTAAATTTGAAGA+TGG | - | chr5_3:15156368-15156387 | Msa0801360:intron | 30.0% | |
| TGTGATTCTCTTCTTTCTAA+CGG | - | chr5_3:15156439-15156458 | Msa0801360:intron | 30.0% | |
| ! | CATGTAGATCTCTATCTTTT+AGG | - | chr5_3:15156475-15156494 | Msa0801360:intron | 30.0% |
| !! | AGATCTCTATCTTTTAGGAA+CGG | - | chr5_3:15156480-15156499 | Msa0801360:intron | 30.0% |
| ! | ATTTGGCTTATTCACTTTGA+AGG | - | chr5_3:15156603-15156622 | Msa0801360:intron | 30.0% |
| !! | AAATCCTACTGACTTTGATA+AGG | + | chr5_3:15156660-15156679 | None:intergenic | 30.0% |
| TTTGTTTGACAGAAGTAAGA+AGG | - | chr5_3:15156829-15156848 | Msa0801360:CDS | 30.0% | |
| TGAAATATGTTGCATGTCTT+AGG | - | chr5_3:15157089-15157108 | Msa0801360:five_prime_UTR | 30.0% | |
| AATTCTCTCCAAACAACTAG+TGG | - | chr5_3:15154552-15154571 | Msa0801360:three_prime_UTR | 35.0% | |
| TATCAGTGTCAAACACAAGA+TGG | + | chr5_3:15154616-15154635 | None:intergenic | 35.0% | |
| !! | GATGATGGTGTTATCGTAAA+TGG | + | chr5_3:15154754-15154773 | None:intergenic | 35.0% |
| TATTCAGCTCATATGGCAAA+AGG | - | chr5_3:15154797-15154816 | Msa0801360:CDS | 35.0% | |
| ATTCAGCTCATATGGCAAAA+GGG | - | chr5_3:15154798-15154817 | Msa0801360:CDS | 35.0% | |
| TGTTGGGATATAAGAGTTTC+AGG | - | chr5_3:15154827-15154846 | Msa0801360:CDS | 35.0% | |
| AACAGAATCAAAACCCGAAT+TGG | + | chr5_3:15154935-15154954 | None:intergenic | 35.0% | |
| TGATTCTGTTGTATCTCATC+AGG | - | chr5_3:15154945-15154964 | Msa0801360:intron | 35.0% | |
| ! | AAGTTAGAAGGCATAGAAGA+AGG | - | chr5_3:15154979-15154998 | Msa0801360:intron | 35.0% |
| !!! | CTTGCTATTCTTGGAGTTTT+TGG | - | chr5_3:15155480-15155499 | Msa0801360:intron | 35.0% |
| GACTGAATAGTAACTACAAG+TGG | - | chr5_3:15155655-15155674 | Msa0801360:intron | 35.0% | |
| TAAAAGCTAGCTCATCATTG+AGG | + | chr5_3:15155687-15155706 | None:intergenic | 35.0% | |
| AAAAGCTATCTCATATGGTG+AGG | + | chr5_3:15155819-15155838 | None:intergenic | 35.0% | |
| !!! | CTTTTAGAGTTGAGTTAAGC+TGG | - | chr5_3:15155834-15155853 | Msa0801360:intron | 35.0% |
| TTAACCCTTGGTACGAATTA+AGG | - | chr5_3:15155909-15155928 | Msa0801360:intron | 35.0% | |
| CTTTCCTTAATTCGTACCAA+GGG | + | chr5_3:15155916-15155935 | None:intergenic | 35.0% | |
| ACTTTCCTTAATTCGTACCA+AGG | + | chr5_3:15155917-15155936 | None:intergenic | 35.0% | |
| AAAAGACTCTGCAACAAATG+TGG | + | chr5_3:15156112-15156131 | None:intergenic | 35.0% | |
| !!! | AGAGTCTTTTTTGGGATACT+TGG | - | chr5_3:15156122-15156141 | Msa0801360:intron | 35.0% |
| CTAACTCATCGTTACAAAAC+TGG | + | chr5_3:15156353-15156372 | None:intergenic | 35.0% | |
| !! | CAGTTTTGTAACGATGAGTT+AGG | - | chr5_3:15156351-15156370 | Msa0801360:intron | 35.0% |
| GACAACACTAACACAAAAGT+AGG | + | chr5_3:15156398-15156417 | None:intergenic | 35.0% | |
| ! | AGTGTTGTCATTGTTCTAAG+AGG | - | chr5_3:15156409-15156428 | Msa0801360:intron | 35.0% |
| TGACTTTGATAAGGTTGACT+AGG | + | chr5_3:15156651-15156670 | None:intergenic | 35.0% | |
| TCAACCTTATCAAAGTCAGT+AGG | - | chr5_3:15156653-15156672 | Msa0801360:intron | 35.0% | |
| TCAAAGTCAGTAGGATTTAG+TGG | - | chr5_3:15156662-15156681 | Msa0801360:intron | 35.0% | |
| AGTGAATGAACTGAAAACCA+AGG | - | chr5_3:15156772-15156791 | Msa0801360:CDS | 35.0% | |
| AATGAACTGAAAACCAAGGT+TGG | - | chr5_3:15156776-15156795 | Msa0801360:CDS | 35.0% | |
| ! | TTAATTAGCCTCATTCAGCT+TGG | + | chr5_3:15156933-15156952 | None:intergenic | 35.0% |
| TCATCACTCATGAGAATGTA+AGG | - | chr5_3:15156979-15156998 | Msa0801360:five_prime_UTR | 35.0% | |
| ! | GAGAGTCAAGGTTGTTGATT+TGG | + | chr5_3:15154688-15154707 | None:intergenic | 40.0% |
| CCTGAGAAAGTTTCATGGTT+GGG | + | chr5_3:15154717-15154736 | None:intergenic | 40.0% | |
| CAATGCCTGAGAAAGTTTCA+TGG | + | chr5_3:15154722-15154741 | None:intergenic | 40.0% | |
| CATGAAACTTTCTCAGGCAT+TGG | - | chr5_3:15154720-15154739 | Msa0801360:three_prime_UTR | 40.0% | |
| !! | CATAGAAGAAGGCATTGAGA+AGG | - | chr5_3:15154990-15155009 | Msa0801360:intron | 40.0% |
| TCAAATAAGCCGATCCAAAC+TGG | - | chr5_3:15155247-15155266 | Msa0801360:intron | 40.0% | |
| GTCTTACAACCAGTTTGGAT+CGG | + | chr5_3:15155259-15155278 | None:intergenic | 40.0% | |
| CACATGTCTTACAACCAGTT+TGG | + | chr5_3:15155264-15155283 | None:intergenic | 40.0% | |
| AGACATGTGTTGAGAGTTTG+TGG | - | chr5_3:15155275-15155294 | Msa0801360:intron | 40.0% | |
| !! | TGTCGGTTTCTTGCTATTCT+TGG | - | chr5_3:15155471-15155490 | Msa0801360:intron | 40.0% |
| !!! | GGAGTTTTTGGGTCTTTGAT+TGG | - | chr5_3:15155492-15155511 | Msa0801360:intron | 40.0% |
| TCTCATATGGTGAGGTTTGT+AGG | + | chr5_3:15155811-15155830 | None:intergenic | 40.0% | |
| CCTGACATGTACTTACGAAT+TGG | + | chr5_3:15155888-15155907 | None:intergenic | 40.0% | |
| CCAATTCGTAAGTACATGTC+AGG | - | chr5_3:15155885-15155904 | Msa0801360:intron | 40.0% | |
| CAATTGCTGATAGAAGCTCT+TGG | - | chr5_3:15156165-15156184 | Msa0801360:CDS | 40.0% | |
| !! | GTGATGCTAGTCTTTGGAAT+GGG | - | chr5_3:15156502-15156521 | Msa0801360:intron | 40.0% |
| TTCCAATGTTTCTCCTTCTC+AGG | - | chr5_3:15156721-15156740 | Msa0801360:CDS | 40.0% | |
| TTCCTGAGAAGGAGAAACAT+TGG | + | chr5_3:15156726-15156745 | None:intergenic | 40.0% | |
| ! | ATAGTGATGCTGCTTCTGAT+TGG | - | chr5_3:15156806-15156825 | Msa0801360:CDS | 40.0% |
| CAAATCCACAGGAGTTTGAA+TGG | + | chr5_3:15156858-15156877 | None:intergenic | 40.0% | |
| !! | GTTTGGTGCCACTAGTTGTT+TGG | + | chr5_3:15154563-15154582 | None:intergenic | 45.0% |
| TGGCACCAAACCAAAGACAA+AGG | - | chr5_3:15154572-15154591 | Msa0801360:three_prime_UTR | 45.0% | |
| GTTGGGATTTCAGAGAGTCA+AGG | + | chr5_3:15154700-15154719 | None:intergenic | 45.0% | |
| CCCAACCATGAAACTTTCTC+AGG | - | chr5_3:15154714-15154733 | Msa0801360:three_prime_UTR | 45.0% | |
| GCCTGAGAAAGTTTCATGGT+TGG | + | chr5_3:15154718-15154737 | None:intergenic | 45.0% | |
| TATCTCATCAGGAGATGCCA+GGG | - | chr5_3:15154956-15154975 | Msa0801360:intron | 45.0% | |
| TCTATGCCTTCTAACTTCCC+TGG | + | chr5_3:15154976-15154995 | None:intergenic | 45.0% | |
| CTGCACATTTACAGGGATCT+AGG | + | chr5_3:15155757-15155776 | None:intergenic | 45.0% | |
| CACAGGACTGCACATTTACA+GGG | + | chr5_3:15155764-15155783 | None:intergenic | 45.0% | |
| TCACAGGACTGCACATTTAC+AGG | + | chr5_3:15155765-15155784 | None:intergenic | 45.0% | |
| GGTTTGTAGGACTAGACATC+CGG | + | chr5_3:15155798-15155817 | None:intergenic | 45.0% | |
| TACATGTCAGGCTTAACCCT+TGG | - | chr5_3:15155897-15155916 | Msa0801360:intron | 45.0% | |
| !! | GTATCAGAGCCTATCGATTC+GGG | + | chr5_3:15156294-15156313 | None:intergenic | 45.0% |
| ! | GGTATCAGAGCCTATCGATT+CGG | + | chr5_3:15156295-15156314 | None:intergenic | 45.0% |
| !! | GGTGATGCTAGTCTTTGGAA+TGG | - | chr5_3:15156501-15156520 | Msa0801360:intron | 45.0% |
| AGCATCAAAATGCAGCAGAG+AGG | + | chr5_3:15156699-15156718 | None:intergenic | 45.0% | |
| !! | CATTTTGGTCGTTCCTGAGA+AGG | + | chr5_3:15156737-15156756 | None:intergenic | 45.0% |
| CTTCTCAGGAACGACCAAAA+TGG | - | chr5_3:15156735-15156754 | Msa0801360:CDS | 45.0% | |
| CACTATCACATGACCAACCT+TGG | + | chr5_3:15156792-15156811 | None:intergenic | 45.0% | |
| ! | CAGAAGCATAGCAAATCCAC+AGG | + | chr5_3:15156869-15156888 | None:intergenic | 45.0% |
| ! | TTTGCTGTCCAAGCTGAATG+AGG | - | chr5_3:15156922-15156941 | Msa0801360:CDS | 45.0% |
| TGGCAAAAGGGTCTCTGTGT+TGG | - | chr5_3:15154810-15154829 | Msa0801360:CDS | 50.0% | |
| GGCAAAAGGGTCTCTGTGTT+GGG | - | chr5_3:15154811-15154830 | Msa0801360:CDS | 50.0% | |
| ! | GCCGCTTGTTGCTTCCAATT+CGG | - | chr5_3:15154918-15154937 | Msa0801360:CDS | 50.0% |
| CCCGAATTGGAAGCAACAAG+CGG | + | chr5_3:15154922-15154941 | None:intergenic | 50.0% | |
| ! | CCGCTTGTTGCTTCCAATTC+GGG | - | chr5_3:15154919-15154938 | Msa0801360:CDS | 50.0% |
| GTATCTCATCAGGAGATGCC+AGG | - | chr5_3:15154955-15154974 | Msa0801360:intron | 50.0% | |
| GAGATGCCAGGGAAGTTAGA+AGG | - | chr5_3:15154967-15154986 | Msa0801360:intron | 50.0% | |
| GTCCTGTGAATTTCACGCTC+CGG | - | chr5_3:15155776-15155795 | Msa0801360:intron | 50.0% | |
| ATCCGGAGCGTGAAATTCAC+AGG | + | chr5_3:15155781-15155800 | None:intergenic | 50.0% | |
| CTTGGATAGCCCGAATCGAT+AGG | - | chr5_3:15156282-15156301 | Msa0801360:intron | 50.0% | |
| !! | GGAACGGTGATGCTAGTCTT+TGG | - | chr5_3:15156496-15156515 | Msa0801360:intron | 50.0% |
| GGCTACCATTCAAACTCCTG+TGG | - | chr5_3:15156850-15156869 | Msa0801360:CDS | 50.0% | |
| GAAGCAACAAGCGGCGATGA+CGG | + | chr5_3:15154913-15154932 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15154549 | 15157145 | 15154549 | ID=Msa0801360;Name=Msa0801360 |
| chr5_3 | mRNA | 15154549 | 15157145 | 15154549 | ID=Msa0801360-mRNA-1;Parent=Msa0801360;Name=Msa0801360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172|1|1|1|1|1|5|193|267 |
| chr5_3 | exon | 15154549 | 15154951 | 15154549 | ID=Msa0801360-mRNA-1:exon:6354;Parent=Msa0801360-mRNA-1 |
| chr5_3 | exon | 15155070 | 15155212 | 15155070 | ID=Msa0801360-mRNA-1:exon:6353;Parent=Msa0801360-mRNA-1 |
| chr5_3 | exon | 15155508 | 15155589 | 15155508 | ID=Msa0801360-mRNA-1:exon:6352;Parent=Msa0801360-mRNA-1 |
| chr5_3 | exon | 15156158 | 15156235 | 15156158 | ID=Msa0801360-mRNA-1:exon:6351;Parent=Msa0801360-mRNA-1 |
| chr5_3 | exon | 15156683 | 15157145 | 15156683 | ID=Msa0801360-mRNA-1:exon:6350;Parent=Msa0801360-mRNA-1 |
| chr5_3 | five_prime_UTR | 15156974 | 15157145 | 15156974 | ID=Msa0801360-mRNA-1:five_prime_utr;Parent=Msa0801360-mRNA-1 |
| chr5_3 | CDS | 15156683 | 15156973 | 15156683 | ID=Msa0801360-mRNA-1:cds;Parent=Msa0801360-mRNA-1 |
| chr5_3 | CDS | 15156158 | 15156235 | 15156158 | ID=Msa0801360-mRNA-1:cds;Parent=Msa0801360-mRNA-1 |
| chr5_3 | CDS | 15155508 | 15155589 | 15155508 | ID=Msa0801360-mRNA-1:cds;Parent=Msa0801360-mRNA-1 |
| chr5_3 | CDS | 15155070 | 15155212 | 15155070 | ID=Msa0801360-mRNA-1:cds;Parent=Msa0801360-mRNA-1 |
| chr5_3 | CDS | 15154742 | 15154951 | 15154742 | ID=Msa0801360-mRNA-1:cds;Parent=Msa0801360-mRNA-1 |
| chr5_3 | three_prime_UTR | 15154549 | 15154741 | 15154549 | ID=Msa0801360-mRNA-1:three_prime_utr;Parent=Msa0801360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
