AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080610 MtrunA17_Chr7g0267151 98.099 263 5 0 2 264 3 265 0.0 525
Msa1080610 MtrunA17_Chr1g0177361 83.883 273 29 6 1 264 1 267 1.05e-153 429
Msa1080610 MtrunA17_Chr4g0052651 31.111 180 114 3 73 247 6 180 6.68e-23 93.6
Msa1080610 MtrunA17_Chr4g0070091 30.994 171 102 5 59 228 66 221 4.15e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080610 AT5G06290.1 90.741 216 18 2 50 264 59 273 5.35e-144 405
Msa1080610 AT3G11630.1 91.667 204 16 1 62 264 63 266 6.00e-140 394
Msa1080610 AT5G06290.2 87.845 181 20 2 50 229 59 238 2.55e-113 326
Msa1080610 AT1G48130.1 30.114 176 118 2 73 247 6 177 5.14e-23 94.0
Msa1080610 AT3G26060.3 34.194 155 90 4 74 227 10 153 1.16e-16 75.5
Msa1080610 AT3G26060.1 33.758 157 88 5 74 227 72 215 2.94e-16 75.9
Msa1080610 AT3G26060.2 33.758 157 88 5 74 227 73 216 3.25e-16 75.9

Find 104 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGTGTACACCTTGATTT+TGG 0.190910 7_2:+80151099 Msa1080610:three_prime_UTR
TTGCGCATCATAACTTAAAA+TGG 0.199343 7_2:-80151056 None:intergenic
GGGAGGGAAGTGCGTAGTTT+AGG 0.215883 7_2:-80146473 None:intergenic
AATAATACTTTCATTTATAA+TGG 0.234593 7_2:+80151184 Msa1080610:three_prime_UTR
GTTAAACTATCTGAATATAT+TGG 0.248804 7_2:+80147914 Msa1080610:CDS
TTGGGAGAGAAGAGGATGTT+AGG 0.252613 7_2:-80146392 None:intergenic
GGGAGAGAATTGGAGGAATT+GGG 0.258409 7_2:-80146452 None:intergenic
ATACTTTATCTCTCTATCTT+TGG 0.267768 7_2:+80146289 Msa1080610:five_prime_UTR
AGTACTCTTTGCTAAGTTTA+GGG 0.275142 7_2:-80150933 None:intergenic
AAGTACTCTTTGCTAAGTTT+AGG 0.277836 7_2:-80150934 None:intergenic
ATGTGGTGGAGAAGATAATT+TGG 0.278915 7_2:-80146411 None:intergenic
AGGGAGAGAATTGGAGGAAT+TGG 0.282783 7_2:-80146453 None:intergenic
GGAACTTAATACAGAGATAT+TGG 0.285595 7_2:+80148114 Msa1080610:CDS
GGAGGGAAGTGCGTAGTTTA+GGG 0.295279 7_2:-80146472 None:intergenic
GTATCGATTGGGGATGTAAA+AGG 0.296126 7_2:+80151011 Msa1080610:three_prime_UTR
AAGTTTAGGGTCTGGTTTCA+TGG 0.308012 7_2:-80150920 None:intergenic
CCCGATGAAGTTTGCCCTGC+TGG 0.308593 7_2:+80150877 Msa1080610:CDS
TGGGAGAGAAGAGGATGTTA+GGG 0.369953 7_2:-80146391 None:intergenic
TGCCCTGCTGGGTGGAAGCC+TGG 0.371090 7_2:+80150889 Msa1080610:CDS
TGTGGTGGAGAAGATAATTT+GGG 0.380711 7_2:-80146410 None:intergenic
AAATCCATATCAAAATCTTA+TGG 0.385045 7_2:+80150293 Msa1080610:CDS
TTCACATTTGTTTGCCCCAC+AGG 0.386111 7_2:+80147974 Msa1080610:CDS
TTAAACTATCTGAATATATT+GGG 0.386115 7_2:+80147915 Msa1080610:CDS
CCAGCAGGGCAAACTTCATC+GGG 0.387505 7_2:-80150877 None:intergenic
ACAGCCTCAGCTTCAAAATC+TGG 0.388070 7_2:-80147795 None:intergenic
TGTAGTTCTCGCACCTTGCA+TGG 0.388525 7_2:+80150204 Msa1080610:intron
GTGTCAAAATTTACCTGATC+AGG 0.391100 7_2:-80150326 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.396767 7_2:+80150313 Msa1080610:CDS
ACCATCAACAACCTCGGAAT+TGG 0.399693 7_2:+80150651 Msa1080610:CDS
GCGTAGTTTAGGGAGAGAAT+TGG 0.401138 7_2:-80146462 None:intergenic
ACAGATAAGAACAGAAGAAA+TGG 0.403614 7_2:-80151143 None:intergenic
AGAAGCAGATGGAGCTGAGC+AGG 0.404326 7_2:-80146354 None:intergenic
AGGAGCGGTTGAGGGAAAGA+GGG 0.413713 7_2:-80146493 None:intergenic
GGTTTCATGGACTTCTCACC+AGG 0.417997 7_2:-80150907 None:intergenic
TCACCAGGCTTCCACCCAGC+AGG 0.418832 7_2:-80150892 None:intergenic
GAGAAGAAGAGGAGCGGTTG+AGG 0.419127 7_2:-80146502 None:intergenic
GAGGAGCGGTTGAGGGAAAG+AGG 0.420689 7_2:-80146494 None:intergenic
TCTTTGCTAAGTTTAGGGTC+TGG 0.422181 7_2:-80150928 None:intergenic
ACTGCTCATCTGTATCGATT+GGG 0.429908 7_2:+80151000 Msa1080610:three_prime_UTR
ACCAATTCCGAGGTTGTTGA+TGG 0.432822 7_2:-80150652 None:intergenic
GACAGAAAGTCCGGTGGTCT+CGG 0.433149 7_2:+80150236 Msa1080610:CDS
AACTGCTCATCTGTATCGAT+TGG 0.445433 7_2:+80150999 Msa1080610:three_prime_UTR
GAACTTAATACAGAGATATT+GGG 0.451651 7_2:+80148115 Msa1080610:CDS
GGCGCAGCGTTCCCAACTAA+TGG 0.459593 7_2:-80147774 None:intergenic
AAGAGCGAACTACCATTAGT+TGG 0.460962 7_2:+80147762 Msa1080610:intron
TTTGGCTTCTTCTACCTCAC+AGG 0.463915 7_2:+80146307 Msa1080610:five_prime_UTR
CCCAGCAGGGCAAACTTCAT+CGG 0.471666 7_2:-80150878 None:intergenic
AGCGGTTGAGGGAAAGAGGG+AGG 0.482247 7_2:-80146490 None:intergenic
GGAGAGAATTGGAGGAATTG+GGG 0.485152 7_2:-80146451 None:intergenic
TGACCGCCATGCAGAATTTG+CGG 0.486264 7_2:+80148093 Msa1080610:CDS
GTGTTGTTATTAAAGCATAT+CGG 0.494699 7_2:+80151081 Msa1080610:three_prime_UTR
TGTTCATTATTGACAAGGAA+GGG 0.497591 7_2:+80150613 Msa1080610:CDS
ATGCTTCACCTCCACCCATT+CGG 0.501591 7_2:-80146215 None:intergenic
TTCTGTGATTTAAGTAAGCA+AGG 0.504638 7_2:+80151225 Msa1080610:three_prime_UTR
GCGGTTGAGGGAAAGAGGGA+GGG 0.507328 7_2:-80146489 None:intergenic
GAAACTGCGGCGAGAAGAAG+AGG 0.508647 7_2:-80146513 None:intergenic
CTTACTTAAATCACAGAACA+AGG 0.511073 7_2:-80151220 None:intergenic
AGAAGAAGAGGAGCGGTTGA+GGG 0.511653 7_2:-80146501 None:intergenic
GTAGTTCTCGCACCTTGCAT+GGG 0.512924 7_2:+80150205 Msa1080610:intron
CATAATTCACTCCAAAATCA+AGG 0.515253 7_2:-80151110 None:intergenic
AAACAAATGTGAAGTCCAAT+GGG 0.523515 7_2:-80147964 None:intergenic
TAGTTTAGGGAGAGAATTGG+AGG 0.527220 7_2:-80146459 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 7_2:+80150612 Msa1080610:CDS
AAGATAATTTGGGAGAGAAG+AGG 0.533309 7_2:-80146400 None:intergenic
AGAGCGAACTACCATTAGTT+GGG 0.537134 7_2:+80147763 Msa1080610:intron
CAAACAAATGTGAAGTCCAA+TGG 0.543653 7_2:-80147965 None:intergenic
GAGAGAGAAGAAAGATGTGG+TGG 0.544776 7_2:-80146425 None:intergenic
CCGATGAAGTTTGCCCTGCT+GGG 0.550218 7_2:+80150878 Msa1080610:CDS
GCAGGCCTTGCAATACGTGC+AGG 0.551362 7_2:+80150849 Msa1080610:intron
AGAATTGGAGGAATTGGGGA+TGG 0.555868 7_2:-80146447 None:intergenic
GTTCTCCTGCACGTATTGCA+AGG 0.557103 7_2:-80150854 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 7_2:+80150614 Msa1080610:CDS
AGGTGGGGTTGGAGCCTCTG+AGG 0.558608 7_2:+80146260 Msa1080610:five_prime_UTR
TGAGACAAAGAGAACACTCC+AGG 0.563249 7_2:+80150686 Msa1080610:CDS
GTTCAAACAGACAGAAAGTC+CGG 0.564704 7_2:+80150227 Msa1080610:CDS
GGTTGTTGATGGTAGAATGT+TGG 0.565020 7_2:-80150641 None:intergenic
TGAAATAGTGTCCGAATGGG+TGG 0.576276 7_2:+80146204 Msa1080610:five_prime_UTR
CACCAGGCTTCCACCCAGCA+GGG 0.584088 7_2:-80150891 None:intergenic
GAAGATAAGAGAGAAGCAGA+TGG 0.588346 7_2:-80146365 None:intergenic
TGTCTGTTTGAACCCATGCA+AGG 0.591033 7_2:-80150217 None:intergenic
CTGCTCATCTGTATCGATTG+GGG 0.599468 7_2:+80151001 Msa1080610:three_prime_UTR
ATTTAGGGGATAGCATTGAG+AGG 0.608578 7_2:+80150588 Msa1080610:intron
GTTCAAGTCACCGAGACCAC+CGG 0.609395 7_2:-80150246 None:intergenic
TCATCACACTCACTCAAACA+TGG 0.612785 7_2:+80146331 Msa1080610:exon
AACTTGAAATAGTGTCCGAA+TGG 0.617017 7_2:+80146200 Msa1080610:five_prime_UTR
ACTTGAAATAGTGTCCGAAT+GGG 0.618416 7_2:+80146201 Msa1080610:five_prime_UTR
CAACACTTCTACCAATTCCG+AGG 0.625459 7_2:-80150662 None:intergenic
TAAGTTCCGCAAATTCTGCA+TGG 0.626665 7_2:-80148099 None:intergenic
AGGATTGTTCATTATTGACA+AGG 0.639152 7_2:+80150608 Msa1080610:CDS
ATGGAGAGAGAAGAAAGATG+TGG 0.640784 7_2:-80146428 None:intergenic
CATTCTACCATCAACAACCT+CGG 0.642105 7_2:+80150645 Msa1080610:CDS
GGGTGTTTCAGTTGACAGTG+TGG 0.646005 7_2:+80148135 Msa1080610:CDS
TTGGTGACATCAGATACTAA+AGG 0.646692 7_2:-80150272 None:intergenic
AATAGTGTCCGAATGGGTGG+AGG 0.656627 7_2:+80146207 Msa1080610:five_prime_UTR
ATGAAGTTTGCCCTGCTGGG+TGG 0.658136 7_2:+80150881 Msa1080610:CDS
TTACTTAAATCACAGAACAA+GGG 0.660306 7_2:-80151219 None:intergenic
TAAAGTATATTATACCTCAG+AGG 0.685656 7_2:-80146274 None:intergenic
TGCGGCGAGAAGAAGAGGAG+CGG 0.686466 7_2:-80146508 None:intergenic
AAGCTTTAACGACGAAACTG+CGG 0.686884 7_2:-80146526 None:intergenic
GTTCCGCAAATTCTGCATGG+CGG 0.722852 7_2:-80148096 None:intergenic
GTGAGTGTGATGAGCCTGTG+AGG 0.729084 7_2:-80146321 None:intergenic
AAAGGGTCGACCAACCTGTG+GGG 0.742883 7_2:-80147988 None:intergenic
CAAACAGACAGAAAGTCCGG+TGG 0.767889 7_2:+80150230 Msa1080610:CDS
CAGCAGGGCAAACTTCATCG+GGG 0.776185 7_2:-80150876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATACTAATCT+AGG + chr7_2:80148516-80148535 Msa1080610:intron 10.0%
!! TAAAGAAAATGTAAATAAAA+GGG - chr7_2:80148624-80148643 None:intergenic 10.0%
!! TATATATATATATATGAGTT+AGG - chr7_2:80149788-80149807 None:intergenic 10.0%
!!! TTTAATTTCAATATATTATC+TGG + chr7_2:80150407-80150426 Msa1080610:intron 10.0%
!! AATAATACTTTCATTTATAA+TGG + chr7_2:80151184-80151203 Msa1080610:three_prime_UTR 10.0%
!! TGAGTTTATAAAATTACTTT+CGG + chr7_2:80146669-80146688 Msa1080610:intron 15.0%
!!! ACTTTTTATAATGTAGTATA+AGG + chr7_2:80146820-80146839 Msa1080610:intron 15.0%
!!! CTTTTTATAATGTAGTATAA+GGG + chr7_2:80146821-80146840 Msa1080610:intron 15.0%
!!! TTTTTCAATTAAGAATACAT+GGG - chr7_2:80147024-80147043 None:intergenic 15.0%
!!! TTTTTTCAATTAAGAATACA+TGG - chr7_2:80147025-80147044 None:intergenic 15.0%
!! TTGAATAATTAAAAACAAGA+TGG + chr7_2:80147542-80147561 Msa1080610:intron 15.0%
!! TTAAACTATCTGAATATATT+GGG + chr7_2:80147915-80147934 Msa1080610:CDS 15.0%
!! AGGACTAATTATTAAAATTA+AGG - chr7_2:80148171-80148190 None:intergenic 15.0%
!! TCAATAAATTATAAATGTCT+GGG - chr7_2:80148225-80148244 None:intergenic 15.0%
!! ATCAATAAATTATAAATGTC+TGG - chr7_2:80148226-80148245 None:intergenic 15.0%
!! CTAAAGAAAATGTAAATAAA+AGG - chr7_2:80148625-80148644 None:intergenic 15.0%
!!! TTATTTATAAATTAGTTTGC+TGG - chr7_2:80148718-80148737 None:intergenic 15.0%
!! ATATATATATATATAGAGAC+AGG + chr7_2:80148822-80148841 Msa1080610:intron 15.0%
!! AATATGTATTATTATTGACA+TGG + chr7_2:80149342-80149361 Msa1080610:intron 15.0%
!! ATATGTATTATTATTGACAT+GGG + chr7_2:80149343-80149362 Msa1080610:intron 15.0%
!! TTAAATCTAATTAAGAAACA+TGG + chr7_2:80149394-80149413 Msa1080610:intron 15.0%
!! TAAATCTAATTAAGAAACAT+GGG + chr7_2:80149395-80149414 Msa1080610:intron 15.0%
!! ATTTATTCATTTCATTGTTA+AGG - chr7_2:80149687-80149706 None:intergenic 15.0%
!!! TTTTTTATTCCACTTTTTTT+CGG + chr7_2:80150534-80150553 Msa1080610:intron 15.0%
!!! TAACATCCATCTTATTTTTT+AGG + chr7_2:80146240-80146259 Msa1080610:five_prime_UTR 20.0%
!! AAGTTTCATTAAAATGAGTT+TGG + chr7_2:80146714-80146733 Msa1080610:intron 20.0%
!! TAAGCTATAAGCTAAAAAAT+TGG - chr7_2:80146861-80146880 None:intergenic 20.0%
!! ATATTTATAAGCTAGTACAA+CGG + chr7_2:80147084-80147103 Msa1080610:intron 20.0%
!!! CTATCTTTTACAAATTCAAT+CGG + chr7_2:80147115-80147134 Msa1080610:intron 20.0%
!! GTTAAACTATCTGAATATAT+TGG + chr7_2:80147914-80147933 Msa1080610:CDS 20.0%
!! TACAACTATAGTTTACTAAA+GGG - chr7_2:80148008-80148027 None:intergenic 20.0%
!! ATATAAGAGTTAACAATAGA+AGG - chr7_2:80148191-80148210 None:intergenic 20.0%
!! CAATAAATTATAAATGTCTG+GGG - chr7_2:80148224-80148243 None:intergenic 20.0%
!! ATTTATTGATATGACATTGT+TGG + chr7_2:80148236-80148255 Msa1080610:intron 20.0%
!! GTATATATAAAAAACGTGAA+GGG - chr7_2:80148510-80148529 None:intergenic 20.0%
!! AGTATATATAAAAAACGTGA+AGG - chr7_2:80148511-80148530 None:intergenic 20.0%
!! CATTAGATTAATTAAATGGA+TGG - chr7_2:80148895-80148914 None:intergenic 20.0%
!! CATCCATTTAATTAATCTAA+TGG + chr7_2:80148893-80148912 Msa1080610:intron 20.0%
!! ACACCATTAGATTAATTAAA+TGG - chr7_2:80148899-80148918 None:intergenic 20.0%
!! ATCAAATATTGAATTGATTG+TGG - chr7_2:80149308-80149327 None:intergenic 20.0%
!!! ATTTTAATTGAATCGAATAG+TGG - chr7_2:80149372-80149391 None:intergenic 20.0%
!!! TTTTTTTTGCTATGATCAAT+TGG + chr7_2:80149567-80149586 Msa1080610:intron 20.0%
!!! ATTCTTTGTTTTGATCTTAA+TGG - chr7_2:80149715-80149734 None:intergenic 20.0%
!! ATTAAGATCAAAACAAAGAA+TGG + chr7_2:80149714-80149733 Msa1080610:intron 20.0%
!!! ATTTTGACTTTCCATTATTT+AGG - chr7_2:80149970-80149989 None:intergenic 20.0%
!!! ATAAGATTTTGATATGGATT+TGG - chr7_2:80150294-80150313 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG + chr7_2:80150293-80150312 Msa1080610:CDS 20.0%
!!! TATTATCTGGAATGAAATAT+AGG + chr7_2:80150420-80150439 Msa1080610:intron 20.0%
!!! ATCCATCTTATTTTTTAGGT+GGG + chr7_2:80146244-80146263 Msa1080610:five_prime_UTR 25.0%
! TAAAGTATATTATACCTCAG+AGG - chr7_2:80146277-80146296 None:intergenic 25.0%
! ATACTTTATCTCTCTATCTT+TGG + chr7_2:80146289-80146308 Msa1080610:five_prime_UTR 25.0%
!! TGATACCATCTTAGAATTTT+AGG + chr7_2:80147343-80147362 Msa1080610:intron 25.0%
! AAGTTACAACAGTCAATAAT+TGG - chr7_2:80147655-80147674 None:intergenic 25.0%
! CTACAACTATAGTTTACTAA+AGG - chr7_2:80148009-80148028 None:intergenic 25.0%
! GAACTTAATACAGAGATATT+GGG + chr7_2:80148115-80148134 Msa1080610:CDS 25.0%
!!! TGAACACTCTTTATTTTCTT+CGG - chr7_2:80148359-80148378 None:intergenic 25.0%
!!! ATAAAGAGTGTTCAAAGATT+TGG + chr7_2:80148365-80148384 Msa1080610:intron 25.0%
! AAAATATGTAAGACAGTAAG+TGG - chr7_2:80148392-80148411 None:intergenic 25.0%
!!! GTTTTAAACTCAGTTTGTAT+AGG + chr7_2:80148663-80148682 Msa1080610:intron 25.0%
!!! AGAAAATTTTGGGGATAATT+AGG - chr7_2:80148989-80149008 None:intergenic 25.0%
! AAGTAGAATTGAGTAATTCA+TGG - chr7_2:80149041-80149060 None:intergenic 25.0%
! ATTTAGGGAATAATTAGACA+CGG - chr7_2:80148916-80148935 None:intergenic 25.0%
!!! AGAAAATTTTGGGGATAATT+AGG - chr7_2:80148989-80149008 None:intergenic 25.0%
! AAGTAGAATTGAGTAATTCA+TGG - chr7_2:80149041-80149060 None:intergenic 25.0%
! ATTCATTTCATTGTTAAGGT+GGG - chr7_2:80149683-80149702 None:intergenic 25.0%
! TATTCATTTCATTGTTAAGG+TGG - chr7_2:80149684-80149703 None:intergenic 25.0%
! AACTATTCTATTCTTCCATA+CGG - chr7_2:80149933-80149952 None:intergenic 25.0%
! TATGGAAGAATAGAATAGTT+TGG + chr7_2:80149933-80149952 Msa1080610:intron 25.0%
! ATGGAAGAATAGAATAGTTT+GGG + chr7_2:80149934-80149953 Msa1080610:intron 25.0%
!!! AACACCATAAGATTTTGATA+TGG - chr7_2:80150300-80150319 None:intergenic 25.0%
! CAAAAGACATTGAATTTGAT+AGG - chr7_2:80150384-80150403 None:intergenic 25.0%
! AAAAAACAGATGACTAAATG+TGG - chr7_2:80150754-80150773 None:intergenic 25.0%
! GTAGAACATAGAAAGATAAA+AGG - chr7_2:80150789-80150808 None:intergenic 25.0%
!! GTGTTGTTATTAAAGCATAT+CGG + chr7_2:80151081-80151100 Msa1080610:three_prime_UTR 25.0%
! TTACTTAAATCACAGAACAA+GGG - chr7_2:80151222-80151241 None:intergenic 25.0%
!!! CATCCATCTTATTTTTTAGG+TGG + chr7_2:80146243-80146262 Msa1080610:five_prime_UTR 30.0%
!!! TCCATCTTATTTTTTAGGTG+GGG + chr7_2:80146245-80146264 Msa1080610:five_prime_UTR 30.0%
!! TGAGCTTATGTGTTTTGTTA+TGG + chr7_2:80146578-80146597 Msa1080610:intron 30.0%
GCATCTATCAATTGATAAAC+TGG - chr7_2:80146630-80146649 None:intergenic 30.0%
CCAAACACTACAAATTCAAT+CGG + chr7_2:80147150-80147169 Msa1080610:intron 30.0%
TATACATCTTAGCCTCTATT+TGG - chr7_2:80147231-80147250 None:intergenic 30.0%
AAATAGAGGCTAAGATGTAT+AGG + chr7_2:80147230-80147249 Msa1080610:intron 30.0%
AATAGAGGCTAAGATGTATA+GGG + chr7_2:80147231-80147250 Msa1080610:intron 30.0%
CTAAGATGTATAGGGTAAAA+TGG + chr7_2:80147239-80147258 Msa1080610:intron 30.0%
TATTAGAGACATTGCTTTCA+TGG + chr7_2:80147274-80147293 Msa1080610:intron 30.0%
AGTCTATCCAAAGATTCATT+GGG - chr7_2:80147322-80147341 None:intergenic 30.0%
AAGTCTATCCAAAGATTCAT+TGG - chr7_2:80147323-80147342 None:intergenic 30.0%
!! ACCATCTTAGAATTTTAGGT+TGG + chr7_2:80147347-80147366 Msa1080610:intron 30.0%
!!! CCATCTTAGAATTTTAGGTT+GGG + chr7_2:80147348-80147367 Msa1080610:intron 30.0%
AAGATATAAGGTCTGAACAT+GGG - chr7_2:80147430-80147449 None:intergenic 30.0%
! TTTTGATCAGGAGTTTATCA+AGG + chr7_2:80147818-80147837 Msa1080610:CDS 30.0%
! AACTAAAGCAATGTCTTTTC+AGG + chr7_2:80147892-80147911 Msa1080610:intron 30.0%
AAACAAATGTGAAGTCCAAT+GGG - chr7_2:80147967-80147986 None:intergenic 30.0%
AGGGTGAACAAGAAAATATT+TGG - chr7_2:80148035-80148054 None:intergenic 30.0%
TAGACGAGAAACAAATGTTA+GGG - chr7_2:80148054-80148073 None:intergenic 30.0%
GGAACTTAATACAGAGATAT+TGG + chr7_2:80148114-80148133 Msa1080610:CDS 30.0%
AATCATGAACTATACATGTG+CGG - chr7_2:80148415-80148434 None:intergenic 30.0%
CACATGTATAGTTCATGATT+AGG + chr7_2:80148415-80148434 Msa1080610:intron 30.0%
TTAAATGGATGGATCAGATT+TGG - chr7_2:80148884-80148903 None:intergenic 30.0%
!! AAATTTTGGGGATAATTAGG+CGG - chr7_2:80148986-80149005 None:intergenic 30.0%
! AGATGGTGTAGAAAATTTTG+GGG - chr7_2:80148998-80149017 None:intergenic 30.0%
! GAGATGGTGTAGAAAATTTT+GGG - chr7_2:80148999-80149018 None:intergenic 30.0%
! AGAGATGGTGTAGAAAATTT+TGG - chr7_2:80149000-80149019 None:intergenic 30.0%
! AATTTTCTACACCATCTCTT+TGG + chr7_2:80149001-80149020 Msa1080610:intron 30.0%
!! AAATTTTGGGGATAATTAGG+CGG - chr7_2:80148986-80149005 None:intergenic 30.0%
! AGATGGTGTAGAAAATTTTG+GGG - chr7_2:80148998-80149017 None:intergenic 30.0%
! GAGATGGTGTAGAAAATTTT+GGG - chr7_2:80148999-80149018 None:intergenic 30.0%
! AGAGATGGTGTAGAAAATTT+TGG - chr7_2:80149000-80149019 None:intergenic 30.0%
! AATTTTCTACACCATCTCTT+TGG + chr7_2:80149001-80149020 Msa1080610:intron 30.0%
AGAAGAATCTGAATTGTTGT+TGG - chr7_2:80149262-80149281 None:intergenic 30.0%
ATGAGATTGGGATCAAATTA+AGG + chr7_2:80149422-80149441 Msa1080610:intron 30.0%
TTGGGATCAAATTAAGGAAT+TGG + chr7_2:80149428-80149447 Msa1080610:intron 30.0%
TTAAGGAATTGGATTTGAGT+AGG + chr7_2:80149439-80149458 Msa1080610:intron 30.0%
TCAATTGGTATTTGATTGTG+TGG + chr7_2:80149582-80149601 Msa1080610:intron 30.0%
TTCATTTCATTGTTAAGGTG+GGG - chr7_2:80149682-80149701 None:intergenic 30.0%
GATCAAAACAAAGAATGGTT+AGG + chr7_2:80149719-80149738 Msa1080610:intron 30.0%
AACAAAGAATGGTTAGGATT+TGG + chr7_2:80149725-80149744 Msa1080610:intron 30.0%
GCAGAGGAAAATTAAAACTA+AGG - chr7_2:80149898-80149917 None:intergenic 30.0%
!!! TTTTAATTTTCCTCTGCAAC+CGG + chr7_2:80149901-80149920 Msa1080610:intron 30.0%
TGGAAGAATAGAATAGTTTG+GGG + chr7_2:80149935-80149954 Msa1080610:intron 30.0%
TGACTTTCCATTATTTAGGA+AGG - chr7_2:80149966-80149985 None:intergenic 30.0%
TGGAAAGTCAAAATATCAGT+TGG + chr7_2:80149976-80149995 Msa1080610:intron 30.0%
! TCTTTTTATGTCCAATCCAA+AGG + chr7_2:80150133-80150152 Msa1080610:intron 30.0%
TGAAATATAGGATGCTTTCA+AGG + chr7_2:80150432-80150451 Msa1080610:intron 30.0%
TGCAAATGTTTCGATGATTT+AGG + chr7_2:80150572-80150591 Msa1080610:intron 30.0%
GCAAATGTTTCGATGATTTA+GGG + chr7_2:80150573-80150592 Msa1080610:intron 30.0%
CAAATGTTTCGATGATTTAG+GGG + chr7_2:80150574-80150593 Msa1080610:intron 30.0%
AGGATTGTTCATTATTGACA+AGG + chr7_2:80150608-80150627 Msa1080610:CDS 30.0%
TTGTTCATTATTGACAAGGA+AGG + chr7_2:80150612-80150631 Msa1080610:CDS 30.0%
TGTTCATTATTGACAAGGAA+GGG + chr7_2:80150613-80150632 Msa1080610:CDS 30.0%
AGTACTCTTTGCTAAGTTTA+GGG - chr7_2:80150936-80150955 None:intergenic 30.0%
AAGTACTCTTTGCTAAGTTT+AGG - chr7_2:80150937-80150956 None:intergenic 30.0%
TTGCGCATCATAACTTAAAA+TGG - chr7_2:80151059-80151078 None:intergenic 30.0%
CATAATTCACTCCAAAATCA+AGG - chr7_2:80151113-80151132 None:intergenic 30.0%
ACAGATAAGAACAGAAGAAA+TGG - chr7_2:80151146-80151165 None:intergenic 30.0%
CTTACTTAAATCACAGAACA+AGG - chr7_2:80151223-80151242 None:intergenic 30.0%
TTCTGTGATTTAAGTAAGCA+AGG + chr7_2:80151225-80151244 Msa1080610:three_prime_UTR 30.0%
AACTTGAAATAGTGTCCGAA+TGG + chr7_2:80146200-80146219 Msa1080610:five_prime_UTR 35.0%
ACTTGAAATAGTGTCCGAAT+GGG + chr7_2:80146201-80146220 Msa1080610:five_prime_UTR 35.0%
ACCCCACCTAAAAAATAAGA+TGG - chr7_2:80146249-80146268 None:intergenic 35.0%
!!! TCTTATTTTTTAGGTGGGGT+TGG + chr7_2:80146249-80146268 Msa1080610:five_prime_UTR 35.0%
AAGATAATTTGGGAGAGAAG+AGG - chr7_2:80146403-80146422 None:intergenic 35.0%
! TGTGGTGGAGAAGATAATTT+GGG - chr7_2:80146413-80146432 None:intergenic 35.0%
! ATGTGGTGGAGAAGATAATT+TGG - chr7_2:80146414-80146433 None:intergenic 35.0%
ACACATAAGCTCAACAAAGA+GGG - chr7_2:80146571-80146590 None:intergenic 35.0%
AACACATAAGCTCAACAAAG+AGG - chr7_2:80146572-80146591 None:intergenic 35.0%
TAGATGCGATAGTCTATGTT+TGG + chr7_2:80146643-80146662 Msa1080610:intron 35.0%
ATGTAGTATAAGGGTCTATC+TGG + chr7_2:80146830-80146849 Msa1080610:intron 35.0%
!!! ACGGGTCATTTTTAGTCAAA+TGG - chr7_2:80146896-80146915 None:intergenic 35.0%
TTGACTAAAAATGACCCGTT+TGG + chr7_2:80146897-80146916 Msa1080610:intron 35.0%
AGAAAGCGATTGTTACCAAA+CGG - chr7_2:80146915-80146934 None:intergenic 35.0%
CCGATTGAATTTGTAGTGTT+TGG - chr7_2:80147153-80147172 None:intergenic 35.0%
! CGCTAACTTTTACCAAATAG+AGG + chr7_2:80147216-80147235 Msa1080610:intron 35.0%
! CCCAACCTAAAATTCTAAGA+TGG - chr7_2:80147351-80147370 None:intergenic 35.0%
GAAGATATAAGGTCTGAACA+TGG - chr7_2:80147431-80147450 None:intergenic 35.0%
GTCTCACATTGGAAGATATA+AGG - chr7_2:80147442-80147461 None:intergenic 35.0%
TATTCACTGCAATGCAACAA+TGG - chr7_2:80147481-80147500 None:intergenic 35.0%
TATTTCATTCATTTGCGTGC+TGG + chr7_2:80147620-80147639 Msa1080610:intron 35.0%
! TATCCTCTTTTTCTACCCAT+TGG + chr7_2:80147949-80147968 Msa1080610:CDS 35.0%
CAAACAAATGTGAAGTCCAA+TGG - chr7_2:80147968-80147987 None:intergenic 35.0%
GTAGACGAGAAACAAATGTT+AGG - chr7_2:80148055-80148074 None:intergenic 35.0%
AGTTCATGATTAGGAGTTCT+AGG + chr7_2:80148424-80148443 Msa1080610:intron 35.0%
GTTCATGATTAGGAGTTCTA+GGG + chr7_2:80148425-80148444 Msa1080610:intron 35.0%
! TTGTGTAGTTTCTAGGTTGA+GGG + chr7_2:80148582-80148601 Msa1080610:intron 35.0%
!! AAATTAGTTTGCTGGTCTAG+TGG - chr7_2:80148710-80148729 None:intergenic 35.0%
TTCCCTAAATTGCTAATGTG+AGG + chr7_2:80148926-80148945 Msa1080610:intron 35.0%
CACCTCACATTAGCAATTTA+GGG - chr7_2:80148931-80148950 None:intergenic 35.0%
TCACCTCACATTAGCAATTT+AGG - chr7_2:80148932-80148951 None:intergenic 35.0%
AATTAGGCGGAGATTAAACA+AGG - chr7_2:80148973-80148992 None:intergenic 35.0%
ATTGAGTAATTCATGGACGT+TGG - chr7_2:80149034-80149053 None:intergenic 35.0%
TTCCCTAAATTGCTAATGTG+AGG + chr7_2:80148926-80148945 Msa1080610:intron 35.0%
CACCTCACATTAGCAATTTA+GGG - chr7_2:80148931-80148950 None:intergenic 35.0%
TCACCTCACATTAGCAATTT+AGG - chr7_2:80148932-80148951 None:intergenic 35.0%
AATTAGGCGGAGATTAAACA+AGG - chr7_2:80148973-80148992 None:intergenic 35.0%
ATTGAGTAATTCATGGACGT+TGG - chr7_2:80149034-80149053 None:intergenic 35.0%
GAATTAACTTCGTGTATCCA+TGG + chr7_2:80149236-80149255 Msa1080610:intron 35.0%
CAATTCAGATTCTTCTTCAC+TGG + chr7_2:80149266-80149285 Msa1080610:intron 35.0%
CAAGAAAGACGATGAAACTA+TGG + chr7_2:80149462-80149481 Msa1080610:intron 35.0%
ATTAAAACTAAGGAGTCCAG+TGG - chr7_2:80149888-80149907 None:intergenic 35.0%
GGAAGTTCCTTCCTAAATAA+TGG + chr7_2:80149956-80149975 Msa1080610:intron 35.0%
ATCAAGAAGAAGCAGACTTT+AGG - chr7_2:80150163-80150182 None:intergenic 35.0%
GTCTGCTTCTTCTTGATTAT+CGG + chr7_2:80150166-80150185 Msa1080610:intron 35.0%
! TTGGTGACATCAGATACTAA+AGG - chr7_2:80150275-80150294 None:intergenic 35.0%
GTGTCAAAATTTACCTGATC+AGG - chr7_2:80150329-80150348 None:intergenic 35.0%
!! AGTAGTGAATAGCTTTGTCT+AGG + chr7_2:80150479-80150498 Msa1080610:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG + chr7_2:80150614-80150633 Msa1080610:CDS 35.0%
GCAAGCTACATATAATTACC+TGG - chr7_2:80150707-80150726 None:intergenic 35.0%
TGCAAGTCCAATGCATATAT+GGG - chr7_2:80150832-80150851 None:intergenic 35.0%
!!! TAGCAAAGAGTACTTTTCTG+CGG + chr7_2:80150942-80150961 Msa1080610:CDS 35.0%
TCATCACACTCACTCAAACA+TGG + chr7_2:80146331-80146350 Msa1080610:exon 40.0%
GAAGATAAGAGAGAAGCAGA+TGG - chr7_2:80146368-80146387 None:intergenic 40.0%
ATGGAGAGAGAAGAAAGATG+TGG - chr7_2:80146431-80146450 None:intergenic 40.0%
TAGTTTAGGGAGAGAATTGG+AGG - chr7_2:80146462-80146481 None:intergenic 40.0%
! AAGCTTTAACGACGAAACTG+CGG - chr7_2:80146529-80146548 None:intergenic 40.0%
CACATAAGCTCAACAAAGAG+GGG - chr7_2:80146570-80146589 None:intergenic 40.0%
GAAAGCGATTGTTACCAAAC+GGG - chr7_2:80146914-80146933 None:intergenic 40.0%
ATGGACACATGCACAACATT+AGG + chr7_2:80147293-80147312 Msa1080610:intron 40.0%
TAGGTAGCCCAATGAATCTT+TGG + chr7_2:80147312-80147331 Msa1080610:intron 40.0%
! ATTTGTTACGCGTCTCACAT+TGG - chr7_2:80147453-80147472 None:intergenic 40.0%
TTCAACGCTTATAAGCCTCA+AGG - chr7_2:80147585-80147604 None:intergenic 40.0%
!! GAGGCTTATAAGCGTTGAAA+TGG + chr7_2:80147586-80147605 Msa1080610:intron 40.0%
AAGAGCGAACTACCATTAGT+TGG + chr7_2:80147762-80147781 Msa1080610:intron 40.0%
AGAGCGAACTACCATTAGTT+GGG + chr7_2:80147763-80147782 Msa1080610:intron 40.0%
AGTCCAATGGGTAGAAAAAG+AGG - chr7_2:80147955-80147974 None:intergenic 40.0%
TAAGTTCCGCAAATTCTGCA+TGG - chr7_2:80148102-80148121 None:intergenic 40.0%
ATGAAATTTGCACCTGACAG+TGG + chr7_2:80148550-80148569 Msa1080610:intron 40.0%
AAGTGCGTTGTGTAGTTTCT+AGG + chr7_2:80148575-80148594 Msa1080610:intron 40.0%
! GTTGTGTAGTTTCTAGGTTG+AGG + chr7_2:80148581-80148600 Msa1080610:intron 40.0%
! ATCTGAATTGTTGTTGGCCA+TGG - chr7_2:80149256-80149275 None:intergenic 40.0%
TTCAGATTCTTCTTCACTGG+TGG + chr7_2:80149269-80149288 Msa1080610:intron 40.0%
AAACATGGGAGCTATGAGAT+TGG + chr7_2:80149409-80149428 Msa1080610:intron 40.0%
AACATGGGAGCTATGAGATT+GGG + chr7_2:80149410-80149429 Msa1080610:intron 40.0%
CATCTGTAGTCAGAAGATCA+AGG - chr7_2:80150040-80150059 None:intergenic 40.0%
TAATGCATGCATGTGCTAGT+AGG - chr7_2:80150080-80150099 None:intergenic 40.0%
GTTCAAACAGACAGAAAGTC+CGG + chr7_2:80150227-80150246 Msa1080610:CDS 40.0%
ATAGACCACAGTTTAGATCG+TGG - chr7_2:80150351-80150370 None:intergenic 40.0%
GACACAGATCCGAAAAAAAG+TGG - chr7_2:80150546-80150565 None:intergenic 40.0%
! ATTTAGGGGATAGCATTGAG+AGG + chr7_2:80150588-80150607 Msa1080610:intron 40.0%
!! GGTTGTTGATGGTAGAATGT+TGG - chr7_2:80150644-80150663 None:intergenic 40.0%
AAATGTGGTCATTCCTGGTA+TGG - chr7_2:80150739-80150758 None:intergenic 40.0%
TGACTAAATGTGGTCATTCC+TGG - chr7_2:80150744-80150763 None:intergenic 40.0%
GTTTGTCCCCATATATGCAT+TGG + chr7_2:80150822-80150841 Msa1080610:intron 40.0%
GCAAGTCCAATGCATATATG+GGG - chr7_2:80150831-80150850 None:intergenic 40.0%
CTGCAAGTCCAATGCATATA+TGG - chr7_2:80150833-80150852 None:intergenic 40.0%
CATATATGCATTGGACTTGC+AGG + chr7_2:80150831-80150850 Msa1080610:intron 40.0%
! AAGTTTAGGGTCTGGTTTCA+TGG - chr7_2:80150923-80150942 None:intergenic 40.0%
! TCTTTGCTAAGTTTAGGGTC+TGG - chr7_2:80150931-80150950 None:intergenic 40.0%
! AACTGCTCATCTGTATCGAT+TGG + chr7_2:80150999-80151018 Msa1080610:three_prime_UTR 40.0%
!! ACTGCTCATCTGTATCGATT+GGG + chr7_2:80151000-80151019 Msa1080610:three_prime_UTR 40.0%
!! GTATCGATTGGGGATGTAAA+AGG + chr7_2:80151011-80151030 Msa1080610:three_prime_UTR 40.0%
! ATCGGTGTACACCTTGATTT+TGG + chr7_2:80151099-80151118 Msa1080610:three_prime_UTR 40.0%
TGAAATAGTGTCCGAATGGG+TGG + chr7_2:80146204-80146223 Msa1080610:five_prime_UTR 45.0%
! TTTGGCTTCTTCTACCTCAC+AGG + chr7_2:80146307-80146326 Msa1080610:five_prime_UTR 45.0%
TGGGAGAGAAGAGGATGTTA+GGG - chr7_2:80146394-80146413 None:intergenic 45.0%
TTGGGAGAGAAGAGGATGTT+AGG - chr7_2:80146395-80146414 None:intergenic 45.0%
GAGAGAGAAGAAAGATGTGG+TGG - chr7_2:80146428-80146447 None:intergenic 45.0%
AGAATTGGAGGAATTGGGGA+TGG - chr7_2:80146450-80146469 None:intergenic 45.0%
GGAGAGAATTGGAGGAATTG+GGG - chr7_2:80146454-80146473 None:intergenic 45.0%
GGGAGAGAATTGGAGGAATT+GGG - chr7_2:80146455-80146474 None:intergenic 45.0%
AGGGAGAGAATTGGAGGAAT+TGG - chr7_2:80146456-80146475 None:intergenic 45.0%
GCGTAGTTTAGGGAGAGAAT+TGG - chr7_2:80146465-80146484 None:intergenic 45.0%
!! CCTTACGAGTCGGTTTTGTA+AGG - chr7_2:80147384-80147403 None:intergenic 45.0%
!! CCTTACAAAACCGACTCGTA+AGG + chr7_2:80147381-80147400 Msa1080610:intron 45.0%
GCAATCTTCACCTTACGAGT+CGG - chr7_2:80147394-80147413 None:intergenic 45.0%
AACGCTTATAAGCCTCAAGG+AGG - chr7_2:80147582-80147601 None:intergenic 45.0%
ACAGCCTCAGCTTCAAAATC+TGG - chr7_2:80147798-80147817 None:intergenic 45.0%
!!! AGCTGAGGCTGTTTTTGATC+AGG + chr7_2:80147806-80147825 Msa1080610:CDS 45.0%
TTCACATTTGTTTGCCCCAC+AGG + chr7_2:80147974-80147993 Msa1080610:CDS 45.0%
CTTCGGTAGCAGATATGCAT+AGG - chr7_2:80148342-80148361 None:intergenic 45.0%
!! GAGTTCTAGGGAAATCTGCA+TGG + chr7_2:80148437-80148456 Msa1080610:intron 45.0%
!! AAAAAACGTGAAGGGTGCCA+CGG - chr7_2:80148502-80148521 None:intergenic 45.0%
TTGGTGTGTCTCCAAAGAGA+TGG - chr7_2:80149015-80149034 None:intergenic 45.0%
TTGGTGTGTCTCCAAAGAGA+TGG - chr7_2:80149015-80149034 None:intergenic 45.0%
! ATTCTTCTTCACTGGTGGTG+TGG + chr7_2:80149274-80149293 Msa1080610:intron 45.0%
ACCGTAAGGATACCAGACAT+AGG + chr7_2:80149614-80149633 Msa1080610:intron 45.0%
CCCTATGTCTGGTATCCTTA+CGG - chr7_2:80149618-80149637 None:intergenic 45.0%
CCGTAAGGATACCAGACATA+GGG + chr7_2:80149615-80149634 Msa1080610:intron 45.0%
TAAGGATACCAGACATAGGG+AGG + chr7_2:80149618-80149637 Msa1080610:intron 45.0%
ATCTTCTTCCTCCCTATGTC+TGG - chr7_2:80149629-80149648 None:intergenic 45.0%
TCAACGAATTCGTTGACACC+TGG + chr7_2:80149750-80149769 Msa1080610:intron 45.0%
AAAACTAAGGAGTCCAGTGG+CGG - chr7_2:80149885-80149904 None:intergenic 45.0%
TTCTTCCATACGGATGTAGC+CGG - chr7_2:80149923-80149942 None:intergenic 45.0%
!! CTTTAGGAGTGCCTTTGGAT+TGG - chr7_2:80150147-80150166 None:intergenic 45.0%
TGTCTGTTTGAACCCATGCA+AGG - chr7_2:80150220-80150239 None:intergenic 45.0%
TGGTGTTCTCATTCCTGATC+AGG + chr7_2:80150313-80150332 Msa1080610:CDS 45.0%
TGACACCACGATCTAAACTG+TGG + chr7_2:80150343-80150362 Msa1080610:intron 45.0%
TGAGACAAAGAGAACACTCC+AGG + chr7_2:80150686-80150705 Msa1080610:CDS 45.0%
TCATTCCTGGTATGGTGCAT+TGG - chr7_2:80150731-80150750 None:intergenic 45.0%
! TACTTTTCTGCGGTGTAGTG+TGG + chr7_2:80150952-80150971 Msa1080610:exon 45.0%
!! CTGCTCATCTGTATCGATTG+GGG + chr7_2:80151001-80151020 Msa1080610:three_prime_UTR 45.0%
AATAGTGTCCGAATGGGTGG+AGG + chr7_2:80146207-80146226 Msa1080610:five_prime_UTR 50.0%
ATGCTTCACCTCCACCCATT+CGG - chr7_2:80146218-80146237 None:intergenic 50.0%
! GGAGGGAAGTGCGTAGTTTA+GGG - chr7_2:80146475-80146494 None:intergenic 50.0%
AGAAGAAGAGGAGCGGTTGA+GGG - chr7_2:80146504-80146523 None:intergenic 50.0%
AAGCCTCAAGGAGGAAGAGT+CGG - chr7_2:80147573-80147592 None:intergenic 50.0%
!!! TGCGCCAGATTTTGAAGCTG+AGG + chr7_2:80147791-80147810 Msa1080610:CDS 50.0%
CATTTGTTTGCCCCACAGGT+TGG + chr7_2:80147978-80147997 Msa1080610:intron 50.0%
TAAAGGGTCGACCAACCTGT+GGG - chr7_2:80147992-80148011 None:intergenic 50.0%
TGACCGCCATGCAGAATTTG+CGG + chr7_2:80148093-80148112 Msa1080610:CDS 50.0%
GTTCCGCAAATTCTGCATGG+CGG - chr7_2:80148099-80148118 None:intergenic 50.0%
GGGTGTTTCAGTTGACAGTG+TGG + chr7_2:80148135-80148154 Msa1080610:CDS 50.0%
ATCTGCATGGACTCCTTCAG+TGG + chr7_2:80148450-80148469 Msa1080610:intron 50.0%
CAACGCACTTAACCACTGTC+AGG - chr7_2:80148565-80148584 None:intergenic 50.0%
TCAACGAATCCGTTGACACC+TGG - chr7_2:80148859-80148878 None:intergenic 50.0%
TGTGGAAGAACCTGACCGTA+AGG + chr7_2:80149600-80149619 Msa1080610:intron 50.0%
TGTCTGGTATCCTTACGGTC+AGG - chr7_2:80149613-80149632 None:intergenic 50.0%
! CGTTGACACCTGGTGTCAAA+CGG + chr7_2:80149760-80149779 Msa1080610:intron 50.0%
GTTAGGATCCGTTTGACACC+AGG - chr7_2:80149771-80149790 None:intergenic 50.0%
TTTCAATCAAGCTCCGCCAC+TGG + chr7_2:80149869-80149888 Msa1080610:intron 50.0%
!! GCAGACTTTAGGAGTGCCTT+TGG - chr7_2:80150152-80150171 None:intergenic 50.0%
TGTAGTTCTCGCACCTTGCA+TGG + chr7_2:80150204-80150223 Msa1080610:intron 50.0%
GTAGTTCTCGCACCTTGCAT+GGG + chr7_2:80150205-80150224 Msa1080610:intron 50.0%
CAAACAGACAGAAAGTCCGG+TGG + chr7_2:80150230-80150249 Msa1080610:CDS 50.0%
TTGCACCAATGCACCATACC+AGG + chr7_2:80150723-80150742 Msa1080610:intron 50.0%
GTTCTCCTGCACGTATTGCA+AGG - chr7_2:80150857-80150876 None:intergenic 50.0%
GGTTTCATGGACTTCTCACC+AGG - chr7_2:80150910-80150929 None:intergenic 50.0%
GTGAGTGTGATGAGCCTGTG+AGG - chr7_2:80146324-80146343 None:intergenic 55.0%
AGAAGCAGATGGAGCTGAGC+AGG - chr7_2:80146357-80146376 None:intergenic 55.0%
! GGGAGGGAAGTGCGTAGTTT+AGG - chr7_2:80146476-80146495 None:intergenic 55.0%
AGGAGCGGTTGAGGGAAAGA+GGG - chr7_2:80146496-80146515 None:intergenic 55.0%
GAGAAGAAGAGGAGCGGTTG+AGG - chr7_2:80146505-80146524 None:intergenic 55.0%
GAAACTGCGGCGAGAAGAAG+AGG - chr7_2:80146516-80146535 None:intergenic 55.0%
TTCCCGACTCTTCCTCCTTG+AGG + chr7_2:80147567-80147586 Msa1080610:intron 55.0%
AGCCTCAAGGAGGAAGAGTC+GGG - chr7_2:80147572-80147591 None:intergenic 55.0%
AAAGGGTCGACCAACCTGTG+GGG - chr7_2:80147991-80148010 None:intergenic 55.0%
CTAAAGGGTCGACCAACCTG+TGG - chr7_2:80147993-80148012 None:intergenic 55.0%
TGCATGGACTCCTTCAGTGG+CGG + chr7_2:80148453-80148472 Msa1080610:intron 55.0%
! TTCAGTGGCGGGGCTTCTAT+GGG + chr7_2:80148465-80148484 Msa1080610:intron 55.0%
AGACAGGATCCGTTGACACC+AGG + chr7_2:80148838-80148857 Msa1080610:intron 55.0%
! CCGTTGACACCTGGTGTCAA+CGG - chr7_2:80148850-80148869 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG + chr7_2:80148847-80148866 Msa1080610:intron 55.0%
TGCAACCGGCTACATCCGTA+TGG + chr7_2:80149915-80149934 Msa1080610:intron 55.0%
GACAGAAAGTCCGGTGGTCT+CGG + chr7_2:80150236-80150255 Msa1080610:CDS 55.0%
GTTCAAGTCACCGAGACCAC+CGG - chr7_2:80150249-80150268 None:intergenic 55.0%
CAGCAGGGCAAACTTCATCG+GGG - chr7_2:80150879-80150898 None:intergenic 55.0%
CCAGCAGGGCAAACTTCATC+GGG - chr7_2:80150880-80150899 None:intergenic 55.0%
CCCAGCAGGGCAAACTTCAT+CGG - chr7_2:80150881-80150900 None:intergenic 55.0%
CCGATGAAGTTTGCCCTGCT+GGG + chr7_2:80150878-80150897 Msa1080610:CDS 55.0%
ATGAAGTTTGCCCTGCTGGG+TGG + chr7_2:80150881-80150900 Msa1080610:CDS 55.0%
GCGGTTGAGGGAAAGAGGGA+GGG - chr7_2:80146492-80146511 None:intergenic 60.0%
AGCGGTTGAGGGAAAGAGGG+AGG - chr7_2:80146493-80146512 None:intergenic 60.0%
GAGGAGCGGTTGAGGGAAAG+AGG - chr7_2:80146497-80146516 None:intergenic 60.0%
TGCGGCGAGAAGAAGAGGAG+CGG - chr7_2:80146511-80146530 None:intergenic 60.0%
GGCGCAGCGTTCCCAACTAA+TGG - chr7_2:80147777-80147796 None:intergenic 60.0%
GCATGGACTCCTTCAGTGGC+GGG + chr7_2:80148454-80148473 Msa1080610:intron 60.0%
CATGGACTCCTTCAGTGGCG+GGG + chr7_2:80148455-80148474 Msa1080610:intron 60.0%
CATAGAAGCCCCGCCACTGA+AGG - chr7_2:80148466-80148485 None:intergenic 60.0%
! CTTCAGTGGCGGGGCTTCTA+TGG + chr7_2:80148464-80148483 Msa1080610:intron 60.0%
TATGGGCCGGGTTAATGCCG+TGG + chr7_2:80148482-80148501 Msa1080610:intron 60.0%
! AGGGTGCCACGGCATTAACC+CGG - chr7_2:80148491-80148510 None:intergenic 60.0%
ACGGATGTAGCCGGTTGCAG+AGG - chr7_2:80149914-80149933 None:intergenic 60.0%
GCAGGCCTTGCAATACGTGC+AGG + chr7_2:80150849-80150868 Msa1080610:intron 60.0%
CCCGATGAAGTTTGCCCTGC+TGG + chr7_2:80150877-80150896 Msa1080610:CDS 60.0%
AGGTGGGGTTGGAGCCTCTG+AGG + chr7_2:80146260-80146279 Msa1080610:five_prime_UTR 65.0%
CACCAGGCTTCCACCCAGCA+GGG - chr7_2:80150894-80150913 None:intergenic 65.0%
TCACCAGGCTTCCACCCAGC+AGG - chr7_2:80150895-80150914 None:intergenic 65.0%
! GTGGCGGGGCTTCTATGGGC+CGG + chr7_2:80148469-80148488 Msa1080610:intron 70.0%
TGGCGGGGCTTCTATGGGCC+GGG + chr7_2:80148470-80148489 Msa1080610:intron 70.0%
TGCCCTGCTGGGTGGAAGCC+TGG + chr7_2:80150889-80150908 Msa1080610:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80146166 80151263 80146166 ID=Msa1080610;Name=Msa1080610
chr7_2 mRNA 80146166 80151263 80146166 ID=Msa1080610-mRNA-1;Parent=Msa1080610;Name=Msa1080610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=184|1|1|1|1|1|7|294|264
chr7_2 exon 80146166 80146550 80146166 ID=Msa1080610-mRNA-1:exon:20239;Parent=Msa1080610-mRNA-1
chr7_2 exon 80147765 80147839 80147765 ID=Msa1080610-mRNA-1:exon:20240;Parent=Msa1080610-mRNA-1
chr7_2 exon 80147914 80147995 80147914 ID=Msa1080610-mRNA-1:exon:20241;Parent=Msa1080610-mRNA-1
chr7_2 exon 80148077 80148156 80148077 ID=Msa1080610-mRNA-1:exon:20242;Parent=Msa1080610-mRNA-1
chr7_2 exon 80150209 80150334 80150209 ID=Msa1080610-mRNA-1:exon:20243;Parent=Msa1080610-mRNA-1
chr7_2 exon 80150594 80150707 80150594 ID=Msa1080610-mRNA-1:exon:20244;Parent=Msa1080610-mRNA-1
chr7_2 exon 80150853 80151263 80150853 ID=Msa1080610-mRNA-1:exon:20245;Parent=Msa1080610-mRNA-1
chr7_2 five_prime_UTR 80146166 80146349 80146166 ID=Msa1080610-mRNA-1:five_prime_utr;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80146350 80146550 80146350 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80147765 80147839 80147765 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80147914 80147995 80147914 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80148077 80148156 80148077 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80150209 80150334 80150209 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80150594 80150707 80150594 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 CDS 80150853 80150969 80150853 ID=Msa1080610-mRNA-1:cds;Parent=Msa1080610-mRNA-1
chr7_2 three_prime_UTR 80150970 80151263 80150970 ID=Msa1080610-mRNA-1:three_prime_utr;Parent=Msa1080610-mRNA-1
Gene Sequence

>Msa1080610

ATGGCCTGCTCAGCTCCATCTGCTTCTCTCTTATCTTCAAACCCTAACATCCTCTTCTCTCCCAAATTATCTTCTCCACCACATCTTTCTTCTCTCTCCATCCCCAATTCCTCCAATTCTCTCCCTAAACTACGCACTTCCCTCCCTCTTTCCCTCAACCGCTCCTCTTCTTCTCGCCGCAGTTTCGTCGTTAAAGCTTCTAGCGAACTACCATTAGTTGGGAACGCTGCGCCAGATTTTGAAGCTGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTTAAACTATCTGAATATATTGGGAAGAAATATGTTATCCTCTTTTTCTACCCATTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGCCATGCAGAATTTGCGGAACTTAATACAGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGGTTCAAACAGACAGAAAGTCCGGTGGTCTCGGTGACTTGAACTATCCTTTAGTATCTGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGGGATAGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATCCAACATTCTACCATCAACAACCTCGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTCCAGGCCTTGCAATACGTGCAGGAGAACCCCGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAACCAGACCCTAAACTTAGCAAAGAGTACTTTTCTGCGGTGTAG

Protein sequence

>Msa1080610

MACSAPSASLLSSNPNILFSPKLSSPPHLSSLSIPNSSNSLPKLRTSLPLSLNRSSSSRRSFVVKASSELPLVGNAAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFAELNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV*