AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380270 MtrunA17_Chr3g0145711 98.305 472 4 1 1 472 1 468 0.0 947
Msa0380270 MtrunA17_Chr7g0233361 34.448 299 169 10 80 365 87 371 9.31e-34 132
Msa0380270 MtrunA17_Chr8g0376561 30.537 298 182 8 80 364 52 337 2.15e-31 125
Msa0380270 MtrunA17_Chr7g0244421 27.946 297 197 8 80 364 83 374 8.44e-21 95.1
Msa0380270 MtrunA17_Chr8g0382871 25.373 335 219 11 79 395 82 403 2.13e-17 84.7
Msa0380270 MtrunA17_Chr3g0106581 25.524 286 182 8 41 313 51 318 6.98e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380270 AT3G48730.1 80.127 473 88 3 1 472 5 472 0.0 781
Msa0380270 AT5G63570.1 79.560 455 88 2 18 472 25 474 0.0 755
Msa0380270 AT5G63570.2 82.725 411 71 0 62 472 1 411 0.0 719
Msa0380270 AT5G46180.1 28.882 322 204 8 80 388 59 368 4.46e-30 122
Msa0380270 AT1G80600.1 29.773 309 170 10 80 365 77 361 9.47e-26 109
Msa0380270 AT3G08860.2 26.667 315 206 11 80 378 83 388 3.74e-20 93.2
Msa0380270 AT3G08860.1 26.667 315 206 11 80 378 83 388 5.55e-20 92.8
Msa0380270 AT4G39660.1 25.519 337 216 11 79 395 77 398 1.42e-19 91.7
Msa0380270 AT4G39660.2 25.538 325 207 11 91 395 14 323 3.13e-19 90.1
Msa0380270 AT2G38400.1 25.444 338 214 10 79 395 79 399 1.90e-16 82.0
Msa0380270 AT2G38400.2 25.444 338 214 10 79 395 79 399 2.08e-16 82.0
Msa0380270 AT3G22200.2 22.969 357 211 12 73 382 72 411 6.69e-14 74.3
Msa0380270 AT3G22200.1 22.969 357 211 12 73 382 63 402 6.79e-14 74.3

Find 159 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 3_1:+81965267 Msa0380270:CDS
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 3_1:+81964230 Msa0380270:CDS
ATTAGATCTATGTATTATTA+TGG 0.232859 3_1:+81965486 Msa0380270:three_prime_UTR
CCGAACTCGTTCTTTGACTA+TGG 0.262819 3_1:+81963908 Msa0380270:CDS
TGGAGGTAGGAGAGATATTA+TGG 0.268158 3_1:+81964968 Msa0380270:CDS
CATTGACTATGTTGGTTCTT+GGG 0.275476 3_1:+81964214 Msa0380270:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 3_1:-81964645 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 3_1:+81965387 Msa0380270:CDS
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 3_1:+81965388 Msa0380270:CDS
CTTGATGATCTTCTCTTTGC+CGG 0.295779 3_1:-81964529 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 3_1:-81964789 None:intergenic
ATATGTGGTGGGCATATAAA+TGG 0.309935 3_1:+81965176 Msa0380270:CDS
TTCCCCAGAGTTGTTATATC+AGG 0.310573 3_1:-81964912 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 3_1:+81964213 Msa0380270:CDS
ATGGCTGCTTCGGGTATTGC+AGG 0.331193 3_1:+81963831 Msa0380270:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 3_1:+81965268 Msa0380270:CDS
AGAAACTCTGAAGCGTATTA+AGG 0.338134 3_1:+81965067 Msa0380270:CDS
GAACCTGTTGTTGGAAATTC+CGG 0.340485 3_1:+81964750 Msa0380270:CDS
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 3_1:+81965295 Msa0380270:CDS
GAATACTTGGACAAAATTAC+AGG 0.342820 3_1:+81965104 Msa0380270:CDS
ATGGTCAGATTTGTCAATTC+CGG 0.345817 3_1:+81964462 Msa0380270:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 3_1:+81965186 Msa0380270:CDS
GGGCATATAAATGGGATGTT+TGG 0.352503 3_1:+81965185 Msa0380270:CDS
GCACCTTCACAGTTTGAGGC+TGG 0.354758 3_1:+81965317 Msa0380270:CDS
TCATTCTGAAATGGCTGCTT+CGG 0.355637 3_1:+81963821 Msa0380270:exon
TCCAAGTATTCATAAGTTCC+TGG 0.359322 3_1:-81965092 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 3_1:-81964627 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 3_1:+81965313 Msa0380270:CDS
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 3_1:-81964655 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 3_1:-81964783 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 3_1:-81964718 None:intergenic
CATTCTGAAATGGCTGCTTC+GGG 0.408622 3_1:+81963822 Msa0380270:exon
TATTGGTCACGCTGATGATC+AGG 0.409676 3_1:+81964247 Msa0380270:CDS
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 3_1:+81964443 Msa0380270:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 3_1:-81965267 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 3_1:+81964585 Msa0380270:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 3_1:+81964375 Msa0380270:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 3_1:+81965028 Msa0380270:CDS
GTCTTCCTCGAACCTGTTGT+TGG 0.431603 3_1:+81964741 Msa0380270:CDS
CACCTTCACAGTTTGAGGCT+GGG 0.433643 3_1:+81965318 Msa0380270:CDS
TCTTATCTATCATTCTGAAA+TGG 0.436545 3_1:+81963812 Msa0380270:exon
CTACCTGCCTTAACAAGAAA+AGG 0.436782 3_1:-81964582 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 3_1:+81964948 Msa0380270:CDS
AAACCGGAATTTCCAACAAC+AGG 0.445497 3_1:-81964753 None:intergenic
ACAACTCTGGGGAAGATCAT+TGG 0.450763 3_1:+81964921 Msa0380270:CDS
CCACATGCGAGCACCTTTGA+CGG 0.452870 3_1:-81964171 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 3_1:+81964861 Msa0380270:CDS
TCAGCGTGACCAATAATTGC+AGG 0.459493 3_1:-81964239 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 3_1:+81964215 Msa0380270:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 3_1:+81965331 Msa0380270:CDS
AAATCTGACCATTTCAATGC+TGG 0.463786 3_1:-81964451 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 3_1:+81964510 Msa0380270:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 3_1:+81964908 Msa0380270:CDS
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 3_1:-81964617 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 3_1:+81964086 Msa0380270:intron
ACTCCTGATATAACAACTCT+GGG 0.468947 3_1:+81964909 Msa0380270:CDS
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 3_1:+81964987 Msa0380270:CDS
AGAGAAGATCATCAAGTTTG+AGG 0.471292 3_1:+81964536 Msa0380270:CDS
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 3_1:+81965119 Msa0380270:CDS
AAGACAAGGTGCACCAAAGC+TGG 0.477394 3_1:-81964388 None:intergenic
GAGAAGATCATCAAGTTTGA+GGG 0.481387 3_1:+81964537 Msa0380270:CDS
TTTGACGGAATCAATGATGA+TGG 0.482061 3_1:-81964156 None:intergenic
GACCATTGCTGCTGCTGAGA+AGG 0.485730 3_1:+81965379 Msa0380270:CDS
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 3_1:-81964517 None:intergenic
TTCGGTGCTGGGCTTCTGGT+CGG 0.486793 3_1:-81963940 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 3_1:+81965134 Msa0380270:CDS
AACCAACATAGTCAATGTAT+TGG 0.491453 3_1:-81964208 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 3_1:-81964122 None:intergenic
AAGAAGAGAAGCAATTGAGA+AGG 0.496897 3_1:-81963860 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 3_1:+81964843 Msa0380270:CDS
GCCAGGAACTTATGAATACT+TGG 0.499909 3_1:+81965091 Msa0380270:CDS
AGGAAATAACATGAAGATGC+AGG 0.500720 3_1:-81965641 None:intergenic
GCTGGACCTATGTACCAGGC+TGG 0.502027 3_1:+81965005 Msa0380270:CDS
AACAGCAGCAAAGTCATTGA+AGG 0.503512 3_1:-81964679 None:intergenic
CCATAGTCAAAGAACGAGTT+CGG 0.503585 3_1:-81963908 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 3_1:+81965041 Msa0380270:CDS
AGAAGAGAAGCAATTGAGAA+GGG 0.505692 3_1:-81963859 None:intergenic
TTCCGGCACAGAAGCATGCA+TGG 0.507223 3_1:+81964479 Msa0380270:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 3_1:+81964125 Msa0380270:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 3_1:-81964869 None:intergenic
ATCATCATTGATTCCGTCAA+AGG 0.509370 3_1:+81964158 Msa0380270:CDS
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 3_1:+81965146 Msa0380270:CDS
AACCAATACATTGACTATGT+TGG 0.510475 3_1:+81964206 Msa0380270:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 3_1:-81964104 None:intergenic
TATTATGGAGACCGTGGCTC+CGG 0.513114 3_1:+81964983 Msa0380270:CDS
AACGTCCCAGCCTGGTACAT+AGG 0.518158 3_1:-81965011 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 3_1:-81965002 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 3_1:+81965284 Msa0380270:CDS
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 3_1:-81965381 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 3_1:+81964618 Msa0380270:CDS
GGTGCTGGGCTTCTGGTCGG+TGG 0.527286 3_1:-81963937 None:intergenic
TGAAAACACTCTAGCTGAGA+TGG 0.530589 3_1:+81964413 Msa0380270:CDS
CTACCTCCATATGCACCTAC+TGG 0.530999 3_1:-81964954 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 3_1:+81964128 Msa0380270:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 3_1:+81964171 Msa0380270:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 3_1:+81965017 Msa0380270:CDS
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 3_1:-81964820 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 3_1:+81965142 Msa0380270:CDS
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 3_1:-81964769 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 3_1:+81964882 Msa0380270:CDS
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 3_1:+81965074 Msa0380270:CDS
CTGGACCTATGTACCAGGCT+GGG 0.542962 3_1:+81965006 Msa0380270:CDS
AATTTCCAACAACAGGTTCG+AGG 0.544211 3_1:-81964746 None:intergenic
TGCCGGTATAAGCACGGGCA+AGG 0.545023 3_1:-81964512 None:intergenic
CTTCCTGTATCTAGTCTCAT+CGG 0.545827 3_1:+81965540 Msa0380270:three_prime_UTR
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 3_1:-81965345 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 3_1:+81965001 Msa0380270:CDS
AATCTGACCATTTCAATGCT+GGG 0.551104 3_1:-81964450 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 3_1:+81964182 Msa0380270:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 3_1:+81964600 Msa0380270:CDS
TCCCACTCAACGTCCCAGCC+TGG 0.554590 3_1:-81965019 None:intergenic
ACCCATGCATGCTTCTGTGC+CGG 0.554652 3_1:-81964481 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 3_1:+81964363 Msa0380270:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 3_1:-81964518 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 3_1:-81964994 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 3_1:-81964636 None:intergenic
ACACCGATGAGACTAGATAC+AGG 0.575451 3_1:-81965543 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 3_1:-81964678 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 3_1:+81965164 Msa0380270:CDS
TATGTGGTGGGCATATAAAT+GGG 0.582602 3_1:+81965177 Msa0380270:CDS
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 3_1:+81965269 Msa0380270:CDS
TAACTTCATCAAACACGAGA+AGG 0.585499 3_1:-81964836 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 3_1:+81965147 Msa0380270:CDS
TGGCTGCTTCGGGTATTGCA+GGG 0.586719 3_1:+81963832 Msa0380270:CDS
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 3_1:-81964616 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 3_1:+81964864 Msa0380270:CDS
AAGTTTGAGGGATGTTATCA+CGG 0.591307 3_1:+81964549 Msa0380270:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 3_1:+81965161 Msa0380270:CDS
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 3_1:-81964358 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 3_1:-81965044 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 3_1:+81964924 Msa0380270:CDS
CAGTAGGTGCATATGGAGGT+AGG 0.601307 3_1:+81964955 Msa0380270:CDS
AGAAGCTTTCGCAGCTGCAA+AGG 0.604865 3_1:+81963986 Msa0380270:CDS
CAGGGCATGCAATATGTGGT+GGG 0.605835 3_1:+81965165 Msa0380270:CDS
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 3_1:+81965018 Msa0380270:CDS
CTGGGGAAGATCATTGGAGG+GGG 0.612965 3_1:+81964927 Msa0380270:CDS
AACTTCATCAAACACGAGAA+GGG 0.614126 3_1:-81964835 None:intergenic
TCCGGCACAGAAGCATGCAT+GGG 0.618306 3_1:+81964480 Msa0380270:CDS
TTGACGGAATCAATGATGAT+GGG 0.620093 3_1:-81964155 None:intergenic
AACAGGTTCGAGGAAGACTA+CGG 0.621214 3_1:-81964736 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 3_1:+81964172 Msa0380270:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 3_1:-81965320 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 3_1:+81964705 Msa0380270:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 3_1:-81965227 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 3_1:-81964613 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 3_1:-81964509 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 3_1:-81964677 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 3_1:+81964977 Msa0380270:CDS
TCTGGGGAAGATCATTGGAG+GGG 0.662523 3_1:+81964926 Msa0380270:CDS
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 3_1:-81964676 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 3_1:+81964925 Msa0380270:CDS
TAACAAGAAAAGGATCAGCA+TGG 0.678181 3_1:-81964572 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 3_1:+81964803 Msa0380270:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 3_1:+81964951 Msa0380270:CDS
GGCAGCTTTAGGAACACCAG+GGG 0.703847 3_1:-81964634 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 3_1:-81964635 None:intergenic
AGGCATTATAAGTCGAACAA+CGG 0.716492 3_1:-81965621 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 3_1:+81964089 Msa0380270:intron
CTCCTGATATAACAACTCTG+GGG 0.744293 3_1:+81964910 Msa0380270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATAAAAGTTTGA+AGG - chr3_1:81964327-81964346 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr3_1:81964329-81964348 Msa0380270:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr3_1:81965459-81965478 Msa0380270:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr3_1:81965486-81965505 Msa0380270:three_prime_UTR 15.0%
!! AATTAAACATAAAAGTTTGA+AGG - chr3_1:81964327-81964346 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr3_1:81964329-81964348 Msa0380270:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr3_1:81965459-81965478 Msa0380270:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr3_1:81965486-81965505 Msa0380270:three_prime_UTR 15.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr3_1:81964073-81964092 Msa0380270:intron 20.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr3_1:81964073-81964092 Msa0380270:intron 20.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr3_1:81963812-81963831 Msa0380270:exon 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr3_1:81964292-81964311 None:intergenic 25.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr3_1:81963812-81963831 Msa0380270:exon 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr3_1:81964292-81964311 None:intergenic 25.0%
! AACCAATACATTGACTATGT+TGG + chr3_1:81964206-81964225 Msa0380270:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr3_1:81964211-81964230 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3_1:81964786-81964805 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3_1:81965104-81965123 Msa0380270:CDS 30.0%
! AACCAATACATTGACTATGT+TGG + chr3_1:81964206-81964225 Msa0380270:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr3_1:81964211-81964230 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3_1:81964786-81964805 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3_1:81965104-81965123 Msa0380270:CDS 30.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr3_1:81963862-81963881 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr3_1:81963863-81963882 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr3_1:81963961-81963980 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr3_1:81964086-81964105 Msa0380270:intron 35.0%
TTGACGGAATCAATGATGAT+GGG - chr3_1:81964158-81964177 None:intergenic 35.0%
TTTGACGGAATCAATGATGA+TGG - chr3_1:81964159-81964178 None:intergenic 35.0%
!! ATCATCATTGATTCCGTCAA+AGG + chr3_1:81964158-81964177 Msa0380270:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3_1:81964213-81964232 Msa0380270:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3_1:81964214-81964233 Msa0380270:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3_1:81964215-81964234 Msa0380270:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3_1:81964405-81964424 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3_1:81964453-81964472 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr3_1:81964454-81964473 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3_1:81964462-81964481 Msa0380270:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3_1:81964536-81964555 Msa0380270:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3_1:81964537-81964556 Msa0380270:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3_1:81964549-81964568 Msa0380270:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3_1:81964575-81964594 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3_1:81964575-81964594 Msa0380270:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3_1:81964705-81964724 Msa0380270:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3_1:81964772-81964791 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3_1:81964838-81964857 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3_1:81964839-81964858 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3_1:81964843-81964862 Msa0380270:CDS 35.0%
AACTCCTGATATAACAACTC+TGG + chr3_1:81964908-81964927 Msa0380270:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3_1:81964909-81964928 Msa0380270:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3_1:81965067-81965086 Msa0380270:CDS 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3_1:81965095-81965114 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3_1:81965176-81965195 Msa0380270:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3_1:81965177-81965196 Msa0380270:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3_1:81965186-81965205 Msa0380270:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3_1:81965203-81965222 Msa0380270:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3_1:81965268-81965287 Msa0380270:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3_1:81965269-81965288 Msa0380270:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr3_1:81965624-81965643 None:intergenic 35.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr3_1:81963862-81963881 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr3_1:81963863-81963882 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr3_1:81963961-81963980 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr3_1:81964086-81964105 Msa0380270:intron 35.0%
TTGACGGAATCAATGATGAT+GGG - chr3_1:81964158-81964177 None:intergenic 35.0%
TTTGACGGAATCAATGATGA+TGG - chr3_1:81964159-81964178 None:intergenic 35.0%
!! ATCATCATTGATTCCGTCAA+AGG + chr3_1:81964158-81964177 Msa0380270:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3_1:81964213-81964232 Msa0380270:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3_1:81964214-81964233 Msa0380270:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3_1:81964215-81964234 Msa0380270:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3_1:81964405-81964424 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3_1:81964453-81964472 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr3_1:81964454-81964473 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3_1:81964462-81964481 Msa0380270:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3_1:81964536-81964555 Msa0380270:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3_1:81964537-81964556 Msa0380270:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3_1:81964549-81964568 Msa0380270:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3_1:81964575-81964594 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3_1:81964575-81964594 Msa0380270:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3_1:81964705-81964724 Msa0380270:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3_1:81964772-81964791 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3_1:81964838-81964857 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3_1:81964839-81964858 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3_1:81964843-81964862 Msa0380270:CDS 35.0%
AACTCCTGATATAACAACTC+TGG + chr3_1:81964908-81964927 Msa0380270:CDS 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3_1:81964909-81964928 Msa0380270:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3_1:81965067-81965086 Msa0380270:CDS 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3_1:81965095-81965114 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3_1:81965176-81965195 Msa0380270:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3_1:81965177-81965196 Msa0380270:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3_1:81965186-81965205 Msa0380270:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3_1:81965203-81965222 Msa0380270:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3_1:81965268-81965287 Msa0380270:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3_1:81965269-81965288 Msa0380270:CDS 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr3_1:81965624-81965643 None:intergenic 35.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr3_1:81963821-81963840 Msa0380270:exon 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr3_1:81963911-81963930 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3_1:81964125-81964144 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3_1:81964125-81964144 Msa0380270:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3_1:81964363-81964382 Msa0380270:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3_1:81964375-81964394 Msa0380270:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3_1:81964413-81964432 Msa0380270:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3_1:81964532-81964551 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3_1:81964579-81964598 Msa0380270:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3_1:81964585-81964604 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3_1:81964585-81964604 Msa0380270:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3_1:81964681-81964700 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3_1:81964682-81964701 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3_1:81964749-81964768 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3_1:81964750-81964769 Msa0380270:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG - chr3_1:81964756-81964775 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3_1:81964792-81964811 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3_1:81964910-81964929 Msa0380270:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3_1:81964915-81964934 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3_1:81964968-81964987 Msa0380270:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3_1:81965091-81965110 Msa0380270:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3_1:81965119-81965138 Msa0380270:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3_1:81965142-81965161 Msa0380270:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3_1:81965185-81965204 Msa0380270:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3_1:81965230-81965249 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3_1:81965270-81965289 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3_1:81965267-81965286 Msa0380270:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3_1:81965295-81965314 Msa0380270:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr3_1:81965540-81965559 Msa0380270:three_prime_UTR 40.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr3_1:81963821-81963840 Msa0380270:exon 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr3_1:81963911-81963930 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3_1:81964125-81964144 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3_1:81964125-81964144 Msa0380270:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3_1:81964363-81964382 Msa0380270:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3_1:81964375-81964394 Msa0380270:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3_1:81964413-81964432 Msa0380270:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3_1:81964532-81964551 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3_1:81964579-81964598 Msa0380270:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3_1:81964585-81964604 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3_1:81964585-81964604 Msa0380270:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3_1:81964681-81964700 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3_1:81964682-81964701 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3_1:81964749-81964768 None:intergenic 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3_1:81964750-81964769 Msa0380270:CDS 40.0%
AAACCGGAATTTCCAACAAC+AGG - chr3_1:81964756-81964775 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3_1:81964792-81964811 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3_1:81964910-81964929 Msa0380270:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3_1:81964915-81964934 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3_1:81964968-81964987 Msa0380270:CDS 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3_1:81965091-81965110 Msa0380270:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3_1:81965119-81965138 Msa0380270:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3_1:81965142-81965161 Msa0380270:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3_1:81965185-81965204 Msa0380270:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3_1:81965230-81965249 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3_1:81965270-81965289 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3_1:81965267-81965286 Msa0380270:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3_1:81965295-81965314 Msa0380270:CDS 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr3_1:81965540-81965559 Msa0380270:three_prime_UTR 40.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr3_1:81963822-81963841 Msa0380270:exon 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr3_1:81963908-81963927 Msa0380270:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr3_1:81963954-81963973 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr3_1:81963955-81963974 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr3_1:81964089-81964108 Msa0380270:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3_1:81964128-81964147 Msa0380270:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3_1:81964230-81964249 Msa0380270:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3_1:81964242-81964261 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3_1:81964247-81964266 Msa0380270:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3_1:81964361-81964380 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3_1:81964443-81964462 Msa0380270:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3_1:81964521-81964540 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3_1:81964648-81964667 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3_1:81964679-81964698 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3_1:81964680-81964699 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3_1:81964721-81964740 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3_1:81964739-81964758 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3_1:81964803-81964822 Msa0380270:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3_1:81964861-81964880 Msa0380270:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3_1:81964882-81964901 Msa0380270:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3_1:81964921-81964940 Msa0380270:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3_1:81964977-81964996 Msa0380270:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3_1:81965041-81965060 Msa0380270:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3_1:81965134-81965153 Msa0380270:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3_1:81965147-81965166 Msa0380270:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3_1:81965284-81965303 Msa0380270:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3_1:81965313-81965332 Msa0380270:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3_1:81965348-81965367 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3_1:81965388-81965407 Msa0380270:CDS 45.0%
ACACCGATGAGACTAGATAC+AGG - chr3_1:81965546-81965565 None:intergenic 45.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr3_1:81963822-81963841 Msa0380270:exon 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr3_1:81963908-81963927 Msa0380270:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr3_1:81963954-81963973 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr3_1:81963955-81963974 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr3_1:81964089-81964108 Msa0380270:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3_1:81964128-81964147 Msa0380270:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3_1:81964230-81964249 Msa0380270:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3_1:81964242-81964261 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3_1:81964247-81964266 Msa0380270:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3_1:81964361-81964380 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3_1:81964443-81964462 Msa0380270:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3_1:81964521-81964540 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3_1:81964648-81964667 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3_1:81964679-81964698 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3_1:81964680-81964699 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3_1:81964721-81964740 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3_1:81964739-81964758 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3_1:81964803-81964822 Msa0380270:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3_1:81964861-81964880 Msa0380270:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3_1:81964882-81964901 Msa0380270:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3_1:81964921-81964940 Msa0380270:CDS 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3_1:81964977-81964996 Msa0380270:CDS 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3_1:81965041-81965060 Msa0380270:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3_1:81965134-81965153 Msa0380270:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3_1:81965147-81965166 Msa0380270:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3_1:81965284-81965303 Msa0380270:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3_1:81965313-81965332 Msa0380270:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3_1:81965348-81965367 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3_1:81965388-81965407 Msa0380270:CDS 45.0%
ACACCGATGAGACTAGATAC+AGG - chr3_1:81965546-81965565 None:intergenic 45.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr3_1:81963986-81964005 Msa0380270:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3_1:81964391-81964410 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3_1:81964520-81964539 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3_1:81964619-81964638 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3_1:81964630-81964649 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3_1:81964638-81964657 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3_1:81964658-81964677 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3_1:81964670-81964689 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3_1:81964671-81964690 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3_1:81964741-81964760 Msa0380270:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3_1:81964808-81964827 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3_1:81964823-81964842 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3_1:81964864-81964883 Msa0380270:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3_1:81964872-81964891 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3_1:81964924-81964943 Msa0380270:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3_1:81964925-81964944 Msa0380270:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3_1:81964926-81964945 Msa0380270:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3_1:81964948-81964967 Msa0380270:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3_1:81964951-81964970 Msa0380270:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3_1:81964957-81964976 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3_1:81964955-81964974 Msa0380270:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3_1:81964983-81965002 Msa0380270:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3_1:81965028-81965047 Msa0380270:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3_1:81965047-81965066 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3_1:81965074-81965093 Msa0380270:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3_1:81965146-81965165 Msa0380270:CDS 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3_1:81965161-81965180 Msa0380270:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3_1:81965165-81965184 Msa0380270:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3_1:81965318-81965337 Msa0380270:CDS 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3_1:81965323-81965342 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3_1:81965387-81965406 Msa0380270:CDS 50.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr3_1:81963986-81964005 Msa0380270:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3_1:81964391-81964410 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3_1:81964520-81964539 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3_1:81964619-81964638 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3_1:81964630-81964649 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3_1:81964638-81964657 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3_1:81964658-81964677 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3_1:81964670-81964689 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3_1:81964671-81964690 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3_1:81964741-81964760 Msa0380270:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3_1:81964808-81964827 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3_1:81964823-81964842 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3_1:81964864-81964883 Msa0380270:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3_1:81964872-81964891 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3_1:81964924-81964943 Msa0380270:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3_1:81964925-81964944 Msa0380270:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3_1:81964926-81964945 Msa0380270:CDS 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3_1:81964948-81964967 Msa0380270:CDS 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3_1:81964951-81964970 Msa0380270:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3_1:81964957-81964976 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3_1:81964955-81964974 Msa0380270:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3_1:81964983-81965002 Msa0380270:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3_1:81965028-81965047 Msa0380270:CDS 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3_1:81965047-81965066 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3_1:81965074-81965093 Msa0380270:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3_1:81965146-81965165 Msa0380270:CDS 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3_1:81965161-81965180 Msa0380270:CDS 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3_1:81965165-81965184 Msa0380270:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3_1:81965318-81965337 Msa0380270:CDS 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3_1:81965323-81965342 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3_1:81965387-81965406 Msa0380270:CDS 50.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr3_1:81963831-81963850 Msa0380270:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr3_1:81963832-81963851 Msa0380270:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr3_1:81963947-81963966 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3_1:81964107-81964126 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3_1:81964174-81964193 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3_1:81964172-81964191 Msa0380270:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3_1:81964182-81964201 Msa0380270:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr3_1:81964479-81964498 Msa0380270:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr3_1:81964480-81964499 Msa0380270:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr3_1:81964484-81964503 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3_1:81964616-81964635 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3_1:81964620-81964639 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3_1:81964618-81964637 Msa0380270:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3_1:81964637-81964656 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3_1:81964639-81964658 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3_1:81964661-81964680 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3_1:81964927-81964946 Msa0380270:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3_1:81964939-81964958 Msa0380270:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3_1:81965006-81965025 Msa0380270:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3_1:81965014-81965033 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3_1:81965164-81965183 Msa0380270:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3_1:81965317-81965336 Msa0380270:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3_1:81965379-81965398 Msa0380270:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3_1:81965384-81965403 None:intergenic 55.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr3_1:81963831-81963850 Msa0380270:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr3_1:81963832-81963851 Msa0380270:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr3_1:81963947-81963966 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3_1:81964107-81964126 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3_1:81964174-81964193 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3_1:81964172-81964191 Msa0380270:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3_1:81964182-81964201 Msa0380270:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr3_1:81964479-81964498 Msa0380270:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr3_1:81964480-81964499 Msa0380270:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr3_1:81964484-81964503 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3_1:81964616-81964635 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3_1:81964620-81964639 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3_1:81964618-81964637 Msa0380270:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3_1:81964637-81964656 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3_1:81964639-81964658 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3_1:81964661-81964680 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3_1:81964927-81964946 Msa0380270:CDS 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3_1:81964939-81964958 Msa0380270:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3_1:81965006-81965025 Msa0380270:CDS 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3_1:81965014-81965033 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3_1:81965164-81965183 Msa0380270:CDS 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3_1:81965317-81965336 Msa0380270:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3_1:81965379-81965398 Msa0380270:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3_1:81965384-81965403 None:intergenic 55.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr3_1:81963943-81963962 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3_1:81964171-81964190 Msa0380270:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3_1:81964512-81964531 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3_1:81964510-81964529 Msa0380270:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3_1:81964515-81964534 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3_1:81964600-81964619 Msa0380270:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3_1:81965001-81965020 Msa0380270:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3_1:81965005-81965024 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3_1:81965005-81965024 Msa0380270:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3_1:81965017-81965036 Msa0380270:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3_1:81965018-81965037 Msa0380270:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3_1:81965331-81965350 Msa0380270:CDS 60.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr3_1:81963943-81963962 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3_1:81964171-81964190 Msa0380270:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3_1:81964512-81964531 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3_1:81964510-81964529 Msa0380270:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3_1:81964515-81964534 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3_1:81964600-81964619 Msa0380270:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3_1:81965001-81965020 Msa0380270:CDS 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3_1:81965005-81965024 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3_1:81965005-81965024 Msa0380270:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3_1:81965017-81965036 Msa0380270:CDS 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3_1:81965018-81965037 Msa0380270:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3_1:81965331-81965350 Msa0380270:CDS 60.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3_1:81964997-81965016 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3_1:81965022-81965041 None:intergenic 65.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3_1:81964997-81965016 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3_1:81965022-81965041 None:intergenic 65.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr3_1:81963940-81963959 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3_1:81964987-81965006 Msa0380270:CDS 70.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr3_1:81963940-81963959 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3_1:81964987-81965006 Msa0380270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81963759 81965657 81963759 ID=Msa0380270;Name=Msa0380270
chr3_1 mRNA 81963759 81965657 81963759 ID=Msa0380270-mRNA-1;Parent=Msa0380270;Name=Msa0380270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=72|1|1|1|1|1|3|239|472
chr3_1 exon 81963759 81964007 81963759 ID=Msa0380270-mRNA-1:exon:20834;Parent=Msa0380270-mRNA-1
chr3_1 exon 81964095 81964268 81964095 ID=Msa0380270-mRNA-1:exon:20835;Parent=Msa0380270-mRNA-1
chr3_1 exon 81964351 81965657 81964351 ID=Msa0380270-mRNA-1:exon:20836;Parent=Msa0380270-mRNA-1
chr3_1 five_prime_UTR 81963759 81963830 81963759 ID=Msa0380270-mRNA-1:five_prime_utr;Parent=Msa0380270-mRNA-1
chr3_1 CDS 81963831 81964007 81963831 ID=Msa0380270-mRNA-1:cds;Parent=Msa0380270-mRNA-1
chr3_1 CDS 81964095 81964268 81964095 ID=Msa0380270-mRNA-1:cds;Parent=Msa0380270-mRNA-1
chr3_1 CDS 81964351 81965418 81964351 ID=Msa0380270-mRNA-1:cds;Parent=Msa0380270-mRNA-1
chr3_1 three_prime_UTR 81965419 81965657 81965419 ID=Msa0380270-mRNA-1:three_prime_utr;Parent=Msa0380270-mRNA-1
Gene Sequence

>Msa0380270

ATGGCTGCTTCGGGTATTGCAGGGATTACCCTTCTCAATTGCTTCTCTTCTTCTTCTTCTTCTTCATCAGCGAGATGCCGAACTCGTTCTTTGACTATGGCTGTTTCCACCGACCAGAAGCCCAGCACCGAAAAACTCACTCTTCGCAAATCTGAAGAAGCTTTCGCAGCTGCAAAGGAATTGATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCCATCATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACAGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGACTGGATTCCGTTTGTCGTATGGAGGTGCTCAACAATACTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCAGTAGGTGCATATGGAGGTAGGAGAGATATTATGGAGACCGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACGTTGAGTGGGAATCCTTTGGCAATGACTGCAGGCATAGAAACTCTGAAGCGTATTAAGGAGCCAGGAACTTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAAGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAGAAGACCATTGCTGCTGCTGAGAAGGTCTTTAGGGAGATCTGA
Protein sequence

>Msa0380270

MAASGIAGITLLNCFSSSSSSSSARCRTRSLTMAVSTDQKPSTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKRIKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI*