AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460170 MtrunA17_Chr3g0109051 95.632 435 16 1 1 432 1 435 0.0 846
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460170 AT5G16620.1 54.783 460 165 10 1 430 1 447 2.10e-131 386

Find 126 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTCCGTTTCGTTGATTT+TGG 0.129563 3_3:+57223709 Msa0460170:five_prime_UTR
ACCATACCTCCTTATCATTT+TGG 0.162044 3_3:-57230446 None:intergenic
ATATACAATCTCAACTATTT+TGG 0.169924 3_3:-57230832 None:intergenic
AAAACCGCAACTTTATTTAT+TGG 0.192350 3_3:-57223591 None:intergenic
AATCAACGAAACGGAGTAAA+AGG 0.206556 3_3:-57223705 None:intergenic
TTCCCCAAAACCTTTGCTTT+TGG 0.215480 3_3:+57223770 Msa0460170:CDS
AGAAGTCATTTCAAAGATTA+TGG 0.238456 3_3:+57230256 Msa0460170:CDS
AGAAGAAAGCCTTTCACTTT+TGG 0.242737 3_3:+57223822 Msa0460170:CDS
TTCTGCTGCACAGTTTCTTC+TGG 0.245558 3_3:-57227144 None:intergenic
CTAGAGGGTCGCCGCTCTTT+TGG 0.251110 3_3:+57225361 Msa0460170:intron
CCTGATGTTAAACAACAATT+TGG 0.258702 3_3:+57230075 Msa0460170:CDS
GTTTAACATCAGGACTATTA+AGG 0.265236 3_3:-57230065 None:intergenic
AAGATGGAGGTGGTGATAAC+TGG 0.269317 3_3:-57225166 None:intergenic
GAATTACATTTGAAGGTAGA+AGG 0.280899 3_3:-57228657 None:intergenic
ATCTCTTCATCAGATCAAAT+TGG 0.292145 3_3:+57230221 Msa0460170:intron
ATCTTTGAAATGACTTCTTC+GGG 0.302432 3_3:-57230251 None:intergenic
AATCTTTGAAATGACTTCTT+CGG 0.305276 3_3:-57230252 None:intergenic
GCCTTGATTAATTTGTTTGT+TGG 0.320161 3_3:+57230612 Msa0460170:exon
TCATCTTTAACATTGATGTC+TGG 0.329458 3_3:-57226041 None:intergenic
GAGCTCTTCCCCGGGGTGTC+AGG 0.345471 3_3:+57230586 Msa0460170:CDS
TTACTGAAGGCTTCTCAAAA+TGG 0.347654 3_3:+57227303 Msa0460170:intron
TGTCCCAAAAGCAAAGGTTT+TGG 0.360372 3_3:-57223774 None:intergenic
TAACATTGATGTCTGGGCCT+GGG 0.364105 3_3:-57226034 None:intergenic
CTTCTTCCTCTCATGTTACC+AGG 0.382539 3_3:+57223868 Msa0460170:CDS
GAATCGCCAAAACCTTGGTT+AGG 0.388655 3_3:-57227333 None:intergenic
GATAGGGAAATCAGTCTTAT+CGG 0.394782 3_3:+57227965 Msa0460170:intron
TCTCACCAAAATCTAAAATC+TGG 0.411193 3_3:+57223903 Msa0460170:CDS
CATCTTTAACATTGATGTCT+GGG 0.413063 3_3:-57226040 None:intergenic
TTTGGATTGGTGTTGGTGTT+GGG 0.414245 3_3:+57225379 Msa0460170:CDS
GTTAAGAGAATTACATTTGA+AGG 0.420217 3_3:-57228664 None:intergenic
GAAAGGAGATCCAGGGGAAA+AGG 0.420348 3_3:-57225874 None:intergenic
ATGATAGCTGCTTGAACTCT+AGG 0.421480 3_3:-57230311 None:intergenic
GCAGCAGGCCCTGGTGGTGT+AGG 0.421863 3_3:-57225909 None:intergenic
TGAAAAGCCATGGCAACATC+AGG 0.432003 3_3:-57230284 None:intergenic
TGGTATTTAGCAATATTCAT+TGG 0.436322 3_3:-57230426 None:intergenic
CCAAATTGTTGTTTAACATC+AGG 0.438878 3_3:-57230075 None:intergenic
GGAAAGGGGAAAGGAGATCC+AGG 0.442142 3_3:-57225882 None:intergenic
AAAATATCTGAGCTCTTCCC+CGG 0.442345 3_3:+57230577 Msa0460170:CDS
ACAGGTAGCTTCAAGATTGA+AGG 0.442422 3_3:+57225526 Msa0460170:intron
GGTGGTGTAGGCATTGGAAA+GGG 0.453571 3_3:-57225897 None:intergenic
TAGAGTTCAAGCAGCTATCA+TGG 0.454291 3_3:+57230313 Msa0460170:CDS
TGACGCATCAAGTTCATTCA+AGG 0.461157 3_3:+57227191 Msa0460170:CDS
TTAACATTGATGTCTGGGCC+TGG 0.464648 3_3:-57226035 None:intergenic
AACATTGATGTCTGGGCCTG+GGG 0.470604 3_3:-57226033 None:intergenic
ATCTCATTGCTCGTCACTAA+AGG 0.471715 3_3:-57230654 None:intergenic
AGATGGAGGTGGTGATAACT+GGG 0.473602 3_3:-57225165 None:intergenic
CAAGTGACGTAAAATAATCA+AGG 0.474042 3_3:+57231033 Msa0460170:three_prime_UTR
TTAGCGGGTGCAGCAGGCCC+TGG 0.474715 3_3:-57225918 None:intergenic
TGAGTACTGTTGTTTGCGGT+AGG 0.475420 3_3:-57223625 None:intergenic
TGTATTCATCTGGCCCATCA+TGG 0.476081 3_3:-57225826 None:intergenic
TTTCCAATGCCTACACCACC+AGG 0.476221 3_3:+57225900 Msa0460170:CDS
CAAGGCTGGCCTGACACCCC+GGG 0.482492 3_3:-57230595 None:intergenic
GAAAAGGCACCACTGTCAAA+TGG 0.483131 3_3:-57225858 None:intergenic
TCAAGGCTGGCCTGACACCC+CGG 0.494700 3_3:-57230596 None:intergenic
AGACTTGAGAGTGGCGTAGT+GGG 0.496069 3_3:-57223652 None:intergenic
GGCCCTGGTGGTGTAGGCAT+TGG 0.496472 3_3:-57225903 None:intergenic
GTAGAATTAGCGGGTGCAGC+AGG 0.500448 3_3:-57225924 None:intergenic
TGCTAAATACCAAAATGATA+AGG 0.501507 3_3:+57230437 Msa0460170:CDS
CATGGGTGGAAGCACTGAAT+GGG 0.502644 3_3:+57230008 Msa0460170:CDS
TAAACCATCTTCTGCACAGT+TGG 0.509673 3_3:-57228017 None:intergenic
AAACCATCTTCTGCACAGTT+GGG 0.513822 3_3:-57228016 None:intergenic
AAATATCTGAGCTCTTCCCC+GGG 0.513824 3_3:+57230578 Msa0460170:CDS
TGCTCATGACTGTATACTAC+AGG 0.519100 3_3:+57230721 Msa0460170:three_prime_UTR
GAAGGGTTCCTCATCTCCTC+AGG 0.521165 3_3:-57228639 None:intergenic
ACATGGGTGGAAGCACTGAA+TGG 0.523691 3_3:+57230007 Msa0460170:CDS
TGAATGGGACAGTCGAATGA+TGG 0.524565 3_3:+57230023 Msa0460170:CDS
ACCAACAAACAAATTAATCA+AGG 0.525827 3_3:-57230613 None:intergenic
AATCGCCAAAACCTTGGTTA+GGG 0.525969 3_3:-57227332 None:intergenic
GAGTACTGTTGTTTGCGGTA+GGG 0.526270 3_3:-57223624 None:intergenic
TCAAGTTGTTGACGATACTC+AGG 0.527223 3_3:-57229072 None:intergenic
TTCTTCCTCTCATGTTACCA+GGG 0.530542 3_3:+57223869 Msa0460170:CDS
TGAGTACTTGTAGAATTAGC+GGG 0.533577 3_3:-57225933 None:intergenic
GGCCAATCCTGATGTTGCCA+TGG 0.534946 3_3:+57230277 Msa0460170:CDS
CAAGCTTTCAAGACCATGAT+GGG 0.535142 3_3:+57225813 Msa0460170:CDS
AGCCATGGCAACATCAGGAT+TGG 0.535702 3_3:-57230279 None:intergenic
GTAGGCATTGGAAAGGGGAA+AGG 0.535843 3_3:-57225891 None:intergenic
AGTCAAGAAACAACATCAGT+TGG 0.538654 3_3:+57225134 Msa0460170:CDS
ACAAACAAATTAATCAAGGC+TGG 0.540529 3_3:-57230609 None:intergenic
AATTACATTTGAAGGTAGAA+GGG 0.544985 3_3:-57228656 None:intergenic
TGTGATTACACAGTCGAAGA+TGG 0.545277 3_3:-57225182 None:intergenic
AAGGCTTTCTTCTTGTGAAG+AGG 0.547042 3_3:-57223812 None:intergenic
ATCAACGAAACGGAGTAAAA+GGG 0.554957 3_3:-57223704 None:intergenic
GGACCCAACTGTGCAGAAGA+TGG 0.556423 3_3:+57228013 Msa0460170:CDS
CCGGAGAATCGCCAAAACCT+TGG 0.557778 3_3:-57227338 None:intergenic
ACAAGCTTTCAAGACCATGA+TGG 0.559229 3_3:+57225812 Msa0460170:CDS
TTACGTGCAGATTGAGAACC+CGG 0.570932 3_3:-57227357 None:intergenic
GAGACTTGAGAGTGGCGTAG+TGG 0.571290 3_3:-57223653 None:intergenic
GCTATTTACCTGAGGAGATG+AGG 0.573622 3_3:+57228631 Msa0460170:intron
GTGAGATTTAGAAGCAACCC+TGG 0.578922 3_3:-57223886 None:intergenic
GTGAATCTCCCAAAAGTGAA+AGG 0.581583 3_3:-57223831 None:intergenic
AGTTTGAGTACTGTTGTTTG+CGG 0.582986 3_3:-57223629 None:intergenic
CCATCCAATAAATAAAGTTG+CGG 0.583555 3_3:+57223587 None:intergenic
TCGCCAAAACCTTGGTTAGG+GGG 0.589507 3_3:-57227330 None:intergenic
TTGAGTACTTGTAGAATTAG+CGG 0.590272 3_3:-57225934 None:intergenic
ACAAAAGTAGAAGCATCCCC+AGG 0.600187 3_3:+57226017 Msa0460170:CDS
GACTGTATACTACAGGCTCA+TGG 0.600637 3_3:+57230728 Msa0460170:three_prime_UTR
GGATGCTTTAGAGAAAATGA+TGG 0.601657 3_3:+57227989 Msa0460170:CDS
TGGTGGTGTAGGCATTGGAA+AGG 0.602470 3_3:-57225898 None:intergenic
TTCATAAGCATATGCAACAA+GGG 0.602748 3_3:+57230999 Msa0460170:three_prime_UTR
TTTCATAAGCATATGCAACA+AGG 0.602903 3_3:+57230998 Msa0460170:three_prime_UTR
GCGGGTGCAGCAGGCCCTGG+TGG 0.606201 3_3:-57225915 None:intergenic
AGGTATGTCTACTGTGACAG+TGG 0.607559 3_3:-57225991 None:intergenic
TACACAGTCGAAGATGGAGG+TGG 0.613224 3_3:-57225176 None:intergenic
ATCGCCAAAACCTTGGTTAG+GGG 0.619666 3_3:-57227331 None:intergenic
GAAGAATGTCCCAAAAGCAA+AGG 0.621236 3_3:-57223780 None:intergenic
GTGGTGTAGGCATTGGAAAG+GGG 0.622133 3_3:-57225896 None:intergenic
TAAATACCAAAATGATAAGG+AGG 0.626637 3_3:+57230440 Msa0460170:CDS
TTATTATCTGTATGTCACAA+TGG 0.628634 3_3:-57230759 None:intergenic
TGTTTCAGAAACAACATGGG+TGG 0.635175 3_3:+57229994 Msa0460170:intron
GAAGAGAAGAGACTTGAGAG+TGG 0.642826 3_3:-57223661 None:intergenic
CTGTTGCAGCTATTTACCTG+AGG 0.645530 3_3:+57228623 Msa0460170:intron
TGCTTTAGAGAAAATGATGG+AGG 0.646175 3_3:+57227992 Msa0460170:CDS
AGCAACCCTGGTAACATGAG+AGG 0.647956 3_3:-57223874 None:intergenic
AGGGAAATCAGTCTTATCGG+TGG 0.657965 3_3:+57227968 Msa0460170:intron
GAAAGGGGAAAGGAGATCCA+GGG 0.661185 3_3:-57225881 None:intergenic
CAAAATAATCCATTTGACAG+TGG 0.665538 3_3:+57225849 Msa0460170:CDS
TTCCAATGCCTACACCACCA+GGG 0.666256 3_3:+57225901 Msa0460170:CDS
ATGGAGGTGGTGATAACTGG+GGG 0.672674 3_3:-57225163 None:intergenic
AAGGCTGGCCTGACACCCCG+GGG 0.676232 3_3:-57230594 None:intergenic
CCAACACCAATCCAAAAGAG+CGG 0.686796 3_3:-57225372 None:intergenic
GATTACACAGTCGAAGATGG+AGG 0.696490 3_3:-57225179 None:intergenic
ATGCTGGGAATACAGTGCAG+GGG 0.702895 3_3:+57225069 Msa0460170:intron
CATACAGATAATAATAACTG+TGG 0.708668 3_3:+57230768 Msa0460170:three_prime_UTR
GATGGAGGTGGTGATAACTG+GGG 0.716112 3_3:-57225164 None:intergenic
AAAGGGGAAAGGAGATCCAG+GGG 0.729197 3_3:-57225880 None:intergenic
AATATCTGAGCTCTTCCCCG+GGG 0.732010 3_3:+57230579 Msa0460170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTAAATTTTTAAATACT+CGG - chr3_3:57224144-57224163 None:intergenic 10.0%
!!! TTTAAAAATTTAAGTTGAAT+TGG + chr3_3:57224148-57224167 Msa0460170:intron 10.0%
!! ATAAGCAAAAAAAAAATAAA+TGG + chr3_3:57226628-57226647 Msa0460170:intron 10.0%
!! TAAGCAAAAAAAAAATAAAT+GGG + chr3_3:57226629-57226648 Msa0460170:intron 10.0%
!!! ATTTGATATTTTTATTTTTG+AGG + chr3_3:57230860-57230879 Msa0460170:three_prime_UTR 10.0%
!!! AATTTTACTCATATTATGTT+AGG + chr3_3:57224346-57224365 Msa0460170:intron 15.0%
!!! ATTTTACTCATATTATGTTA+GGG + chr3_3:57224347-57224366 Msa0460170:intron 15.0%
!! AATTGATTGATAAATAACAA+CGG - chr3_3:57224946-57224965 None:intergenic 15.0%
!! TATTTATGTTCAATACATTA+AGG + chr3_3:57225485-57225504 Msa0460170:intron 15.0%
!! ATTTATGTTCAATACATTAA+GGG + chr3_3:57225486-57225505 Msa0460170:intron 15.0%
!! AATGTTGAAATTGTATAAAA+AGG - chr3_3:57225757-57225776 None:intergenic 15.0%
!!! TAATTTATCTTCATGTTTTT+AGG - chr3_3:57226269-57226288 None:intergenic 15.0%
!! TTACCAGTTATAAATAATAA+AGG - chr3_3:57226332-57226351 None:intergenic 15.0%
!!! CTTTTTGTTTACATAAAATT+AGG + chr3_3:57226549-57226568 Msa0460170:intron 15.0%
!!! ACATTGTTATTACTTAATAA+GGG - chr3_3:57227280-57227299 None:intergenic 15.0%
!!! TACATTGTTATTACTTAATA+AGG - chr3_3:57227281-57227300 None:intergenic 15.0%
!! ATTCTATCATATTTCTTAAT+AGG + chr3_3:57227669-57227688 Msa0460170:intron 15.0%
!!! TTCTTTGAAATTAATTTCTT+AGG + chr3_3:57227700-57227719 Msa0460170:intron 15.0%
!!! AGTTAATTTATACCATTTTT+TGG + chr3_3:57227837-57227856 Msa0460170:intron 15.0%
!!! AGTAATAATAATTTGAAACA+TGG - chr3_3:57229164-57229183 None:intergenic 15.0%
!!! AAATCTTTGAAAATAGAAAA+TGG - chr3_3:57229272-57229291 None:intergenic 15.0%
!! AGAAAAAAAAAAAAAACGAA+AGG + chr3_3:57229485-57229504 Msa0460170:intron 15.0%
!! TTATGAACTAATAGTTAAAT+TGG + chr3_3:57229719-57229738 Msa0460170:intron 15.0%
!! ATGTAAAATGTTAGAAAATA+AGG - chr3_3:57230200-57230219 None:intergenic 15.0%
!!! AATTACCAGATTTTAGATTT+TGG - chr3_3:57223911-57223930 None:intergenic 20.0%
!!! AAAATCTGGTAATTTTTTTG+TGG + chr3_3:57223917-57223936 Msa0460170:intron 20.0%
!!! ATTTGAAATTGAAGTTGAAT+TGG + chr3_3:57224042-57224061 Msa0460170:intron 20.0%
!!! TTTGAAATTGAAGTTGAATT+GGG + chr3_3:57224043-57224062 Msa0460170:intron 20.0%
!!! AAAATTTAAGTTGAATTGGT+AGG + chr3_3:57224152-57224171 Msa0460170:intron 20.0%
!! AGTAAAATTTGACTGAATTA+GGG - chr3_3:57224335-57224354 None:intergenic 20.0%
!! ATAGTAAGTGGTTAAATATA+GGG + chr3_3:57224379-57224398 Msa0460170:intron 20.0%
!! ATAGTAAGTTGTTAAAGTTT+AGG + chr3_3:57224411-57224430 Msa0460170:intron 20.0%
!! TAGTAAGTTGTTAAAGTTTA+GGG + chr3_3:57224412-57224431 Msa0460170:intron 20.0%
!!! TTTGAAATATTCATAACTTC+AGG + chr3_3:57224628-57224647 Msa0460170:intron 20.0%
!! TTGAAATATTCATAACTTCA+GGG + chr3_3:57224629-57224648 Msa0460170:intron 20.0%
!! ACAAATTGAATGTATTTCAA+TGG + chr3_3:57225012-57225031 Msa0460170:intron 20.0%
!! GAAAAAATTAACACAGTATA+CGG - chr3_3:57225453-57225472 None:intergenic 20.0%
!!! GCTATTTTATTTTTTTTGAC+AGG + chr3_3:57225508-57225527 Msa0460170:intron 20.0%
!! TTATAAATAATAAAGGCGAA+TGG - chr3_3:57226325-57226344 None:intergenic 20.0%
!! TATTTATAACTGGTAAATTG+AGG + chr3_3:57226336-57226355 Msa0460170:intron 20.0%
!! ATTTATAACTGGTAAATTGA+GGG + chr3_3:57226337-57226356 Msa0460170:intron 20.0%
!!! ATTGTCTATTTGAAACATAA+AGG - chr3_3:57226433-57226452 None:intergenic 20.0%
!! TTGTTGTATTGTGTTTATTT+GGG - chr3_3:57226472-57226491 None:intergenic 20.0%
!!! TTTGTTGTATTGTGTTTATT+TGG - chr3_3:57226473-57226492 None:intergenic 20.0%
!!! TAGTAAAAAAAAAGCTTTAG+TGG + chr3_3:57226601-57226620 Msa0460170:intron 20.0%
!! AAAAATCACAAAACATCTTT+AGG - chr3_3:57227253-57227272 None:intergenic 20.0%
!! GAACAATCATTTATTTAACA+GGG - chr3_3:57227511-57227530 None:intergenic 20.0%
!! TGAACAATCATTTATTTAAC+AGG - chr3_3:57227512-57227531 None:intergenic 20.0%
!! AATGATTGTTCATGTTATTA+TGG + chr3_3:57227520-57227539 Msa0460170:intron 20.0%
!! CATAATTGTCGAATTTATAA+AGG + chr3_3:57227567-57227586 Msa0460170:intron 20.0%
!! AAAAAAGAAGCTAATATTAC+GGG - chr3_3:57228043-57228062 None:intergenic 20.0%
!! GAAAAAAGAAGCTAATATTA+CGG - chr3_3:57228044-57228063 None:intergenic 20.0%
!! AACATACTTATACAATATCA+TGG - chr3_3:57228183-57228202 None:intergenic 20.0%
!!! ATTGGAAATTTGTTCATTAT+GGG - chr3_3:57228487-57228506 None:intergenic 20.0%
!!! AAAATTTATGAGCTTTCTTT+TGG - chr3_3:57228598-57228617 None:intergenic 20.0%
!!! AAAAGAAAGCTCATAAATTT+TGG + chr3_3:57228597-57228616 Msa0460170:intron 20.0%
!!! AAAGAAAGCTCATAAATTTT+GGG + chr3_3:57228598-57228617 Msa0460170:intron 20.0%
!! TATATACGGCAAATTTATAT+GGG + chr3_3:57228845-57228864 Msa0460170:intron 20.0%
!! ATTAAAAGTGAAAACAGAAA+AGG - chr3_3:57229223-57229242 None:intergenic 20.0%
!!! CTATTTTCAAAGATTTGTAT+AGG + chr3_3:57229276-57229295 Msa0460170:intron 20.0%
!! AAACACAAAATAATGTGAAA+AGG + chr3_3:57229407-57229426 Msa0460170:intron 20.0%
!!! TCATTTCCTTTTTTTTAAAC+TGG + chr3_3:57229633-57229652 Msa0460170:intron 20.0%
!!! ATTAAGGTCGAAATTTTTTA+AGG - chr3_3:57230052-57230071 None:intergenic 20.0%
!!! CTGATTTTTTTGTTTTGTTT+TGG + chr3_3:57230383-57230402 Msa0460170:intron 20.0%
!!! ATATACAATCTCAACTATTT+TGG - chr3_3:57230835-57230854 None:intergenic 20.0%
!!! TAATTTGTACTTCAGTTTTA+AGG + chr3_3:57230939-57230958 Msa0460170:three_prime_UTR 20.0%
! TAAAAGGGTTTGAAAAATTG+GGG - chr3_3:57223692-57223711 None:intergenic 25.0%
! GTAAAAGGGTTTGAAAAATT+GGG - chr3_3:57223693-57223712 None:intergenic 25.0%
! AGTAAAAGGGTTTGAAAAAT+TGG - chr3_3:57223694-57223713 None:intergenic 25.0%
! GTTTGTTTAATGTTGTGAAT+TGG + chr3_3:57223959-57223978 Msa0460170:intron 25.0%
! TTAGTAGAAACAGAATCATT+AGG + chr3_3:57223990-57224009 Msa0460170:intron 25.0%
! TTTGAATATTTATAACCGCA+TGG - chr3_3:57224308-57224327 None:intergenic 25.0%
! GAGTAAAATTTGACTGAATT+AGG - chr3_3:57224336-57224355 None:intergenic 25.0%
! GATAGTAAGTGGTTAAATAT+AGG + chr3_3:57224378-57224397 Msa0460170:intron 25.0%
! ATAGCTAGTAGTTAAGTATA+GGG + chr3_3:57224445-57224464 Msa0460170:intron 25.0%
! TGAAATACATTCAATTTGTG+TGG - chr3_3:57225011-57225030 None:intergenic 25.0%
! CAACTTCATGTAAAATTTGA+AGG - chr3_3:57225661-57225680 None:intergenic 25.0%
!!! GATTATTTTGTGTATTCATC+TGG - chr3_3:57225839-57225858 None:intergenic 25.0%
! TCATCCAACAAGAAAAAAAT+GGG - chr3_3:57226125-57226144 None:intergenic 25.0%
!!! ATCTGTGGTTTTAAGAATTT+AGG + chr3_3:57226199-57226218 Msa0460170:intron 25.0%
! TCGCCTTTATTATTTATAAC+TGG + chr3_3:57226326-57226345 Msa0460170:intron 25.0%
! AAGTAAAACGAACTGAAATT+TGG - chr3_3:57226516-57226535 None:intergenic 25.0%
! AAAGCTTAAAAATAATGCAG+TGG - chr3_3:57226779-57226798 None:intergenic 25.0%
! AAATTTCACGCAAATTAGTA+GGG - chr3_3:57227069-57227088 None:intergenic 25.0%
! AAAATTTCACGCAAATTAGT+AGG - chr3_3:57227070-57227089 None:intergenic 25.0%
! ACAACAAAAAAATATGCATC+AGG - chr3_3:57227102-57227121 None:intergenic 25.0%
!!! GAATGCTTTTGAAAGATTTA+AGG + chr3_3:57227164-57227183 Msa0460170:CDS 25.0%
! ATAACAATGTACATTACTGA+AGG + chr3_3:57227290-57227309 Msa0460170:intron 25.0%
!! TTACATATCTGCTTTATTAC+CGG + chr3_3:57227408-57227427 Msa0460170:intron 25.0%
! TCTATTCAAGCTTAATTTCA+AGG + chr3_3:57227454-57227473 Msa0460170:intron 25.0%
! ATTGTTCATGTTATTATGGT+TGG + chr3_3:57227524-57227543 Msa0460170:intron 25.0%
! GAGAATAAAATAATGCTTCT+AGG - chr3_3:57227797-57227816 None:intergenic 25.0%
! GTTACATGATAACCAAAAAA+TGG - chr3_3:57227852-57227871 None:intergenic 25.0%
!! AATGTGACCTTGTTTATATT+TGG + chr3_3:57227943-57227962 Msa0460170:intron 25.0%
!! ACCTTGTTTATATTTGGATA+GGG + chr3_3:57227949-57227968 Msa0460170:intron 25.0%
!!! AGGATAAGTTCTAAACTTTA+AGG + chr3_3:57228129-57228148 Msa0460170:intron 25.0%
! TTCAATATGAAAATGCAGAA+TGG - chr3_3:57228293-57228312 None:intergenic 25.0%
! TAAACGAAGTTAATTGGAAA+GGG - chr3_3:57228372-57228391 None:intergenic 25.0%
! TTTGTTCATTATGGGAAAAT+AGG - chr3_3:57228479-57228498 None:intergenic 25.0%
!! CATTGGAAATTTGTTCATTA+TGG - chr3_3:57228488-57228507 None:intergenic 25.0%
! AATTACATTTGAAGGTAGAA+GGG - chr3_3:57228659-57228678 None:intergenic 25.0%
! GTTAAGAGAATTACATTTGA+AGG - chr3_3:57228667-57228686 None:intergenic 25.0%
! TGTACAATACTGTCTATATA+CGG + chr3_3:57228831-57228850 Msa0460170:intron 25.0%
! CTATATACGGCAAATTTATA+TGG + chr3_3:57228844-57228863 Msa0460170:intron 25.0%
! AAAGCTTCCATTACATTATA+TGG - chr3_3:57228894-57228913 None:intergenic 25.0%
!! TCTTTGAAAATAGAAAATGG+AGG - chr3_3:57229269-57229288 None:intergenic 25.0%
! CTATTATCAAAGATTTCCAT+AGG + chr3_3:57229343-57229362 Msa0460170:intron 25.0%
!!! ATTCTTTTATTTGCTTCCTA+TGG - chr3_3:57229362-57229381 None:intergenic 25.0%
! AGTGAAAATAACAGATGAAA+AGG + chr3_3:57229449-57229468 Msa0460170:intron 25.0%
!!! TTTTTTTTCTTCACAAAGAC+AGG - chr3_3:57229475-57229494 None:intergenic 25.0%
!! TCTACAAAAACTATTTTCTC+TGG + chr3_3:57229563-57229582 Msa0460170:intron 25.0%
!! GATAAATTGATGCATTTTTC+AGG + chr3_3:57229903-57229922 Msa0460170:intron 25.0%
!!! TGCATTTTTCAGGAATATAT+TGG + chr3_3:57229913-57229932 Msa0460170:intron 25.0%
! TATTGGTATATAGTATCCTT+TGG + chr3_3:57229930-57229949 Msa0460170:intron 25.0%
!!! TTTTGTTTCAGAAACAACAT+GGG + chr3_3:57229991-57230010 Msa0460170:intron 25.0%
!!! AATCTTTGAAATGACTTCTT+CGG - chr3_3:57230255-57230274 None:intergenic 25.0%
! AGAAGTCATTTCAAAGATTA+TGG + chr3_3:57230256-57230275 Msa0460170:CDS 25.0%
! TGGTATTTAGCAATATTCAT+TGG - chr3_3:57230429-57230448 None:intergenic 25.0%
! TGCTAAATACCAAAATGATA+AGG + chr3_3:57230437-57230456 Msa0460170:CDS 25.0%
! TAAATACCAAAATGATAAGG+AGG + chr3_3:57230440-57230459 Msa0460170:CDS 25.0%
! ACCAACAAACAAATTAATCA+AGG - chr3_3:57230616-57230635 None:intergenic 25.0%
!! AGTTTTGCCAATTTTTCTTA+TGG - chr3_3:57230697-57230716 None:intergenic 25.0%
! TTATTATCTGTATGTCACAA+TGG - chr3_3:57230762-57230781 None:intergenic 25.0%
! CATACAGATAATAATAACTG+TGG + chr3_3:57230768-57230787 Msa0460170:three_prime_UTR 25.0%
!! AGTACAAATTAGCGAATTTT+AGG - chr3_3:57230930-57230949 None:intergenic 25.0%
! TCTCACCAAAATCTAAAATC+TGG + chr3_3:57223903-57223922 Msa0460170:CDS 30.0%
!! GAATTTGAGTTTTGCTTACT+AGG + chr3_3:57224098-57224117 Msa0460170:intron 30.0%
TAGGTTATGATGTAGTTCAA+TGG + chr3_3:57224117-57224136 Msa0460170:intron 30.0%
GATAGCTAGTAGTTAAGTAT+AGG + chr3_3:57224444-57224463 Msa0460170:intron 30.0%
! TTTGACACTTTAAGAGAGTT+AGG + chr3_3:57224599-57224618 Msa0460170:intron 30.0%
! TTGACACTTTAAGAGAGTTA+GGG + chr3_3:57224600-57224619 Msa0460170:intron 30.0%
! CAAATTAGTCTGACTTTGTA+AGG - chr3_3:57224669-57224688 None:intergenic 30.0%
CTTACAAAGTCAGACTAATT+TGG + chr3_3:57224667-57224686 Msa0460170:intron 30.0%
! TATGCTATGTTGAGATTTTC+AGG + chr3_3:57224739-57224758 Msa0460170:intron 30.0%
! ATGCTATGTTGAGATTTTCA+GGG + chr3_3:57224740-57224759 Msa0460170:intron 30.0%
! TTGAAACTGATTGCATTTTG+AGG + chr3_3:57224890-57224909 Msa0460170:intron 30.0%
! GTGGAAATTTTCATTAATCG+CGG - chr3_3:57224992-57225011 None:intergenic 30.0%
! TTTGTTCACTACATTTCTAG+AGG + chr3_3:57225345-57225364 Msa0460170:intron 30.0%
! TTGTTCACTACATTTCTAGA+GGG + chr3_3:57225346-57225365 Msa0460170:intron 30.0%
TTGTCAAACCTTATCTTATG+TGG + chr3_3:57225687-57225706 Msa0460170:intron 30.0%
CAAAGAATCCACATAAGATA+AGG - chr3_3:57225698-57225717 None:intergenic 30.0%
CAAAATAATCCATTTGACAG+TGG + chr3_3:57225849-57225868 Msa0460170:CDS 30.0%
TTGAGTACTTGTAGAATTAG+CGG - chr3_3:57225937-57225956 None:intergenic 30.0%
CATCTTTAACATTGATGTCT+GGG - chr3_3:57226043-57226062 None:intergenic 30.0%
TCATCTTTAACATTGATGTC+TGG - chr3_3:57226044-57226063 None:intergenic 30.0%
!!! TGTACGTTACCTGATTTTTT+GGG - chr3_3:57226086-57226105 None:intergenic 30.0%
!!! TTGTACGTTACCTGATTTTT+TGG - chr3_3:57226087-57226106 None:intergenic 30.0%
GTCATCCAACAAGAAAAAAA+TGG - chr3_3:57226126-57226145 None:intergenic 30.0%
CTACATGTGCAATTTATAAG+TGG + chr3_3:57226151-57226170 Msa0460170:intron 30.0%
!!! AATAAAGGCGAATGGTTTTT+TGG - chr3_3:57226317-57226336 None:intergenic 30.0%
AAAGTGAGTGTAAATTAGCA+AGG - chr3_3:57226399-57226418 None:intergenic 30.0%
TCATGGCAATAAAGATTTCT+CGG - chr3_3:57226698-57226717 None:intergenic 30.0%
! AAACAGTTGATGCCTATTTA+GGG - chr3_3:57226841-57226860 None:intergenic 30.0%
! AAAACAGTTGATGCCTATTT+AGG - chr3_3:57226842-57226861 None:intergenic 30.0%
ATGTATAACTAGTCATCATG+TGG + chr3_3:57226875-57226894 Msa0460170:intron 30.0%
CTTCCATGCTTGTATTATTT+GGG + chr3_3:57226904-57226923 Msa0460170:intron 30.0%
AGCAAGGTTGAGAAAAAAAT+AGG - chr3_3:57226952-57226971 None:intergenic 30.0%
!!! AGTTTTTTATCCACCTGTAA+TGG + chr3_3:57227003-57227022 Msa0460170:intron 30.0%
AATTTCACGCAAATTAGTAG+GGG - chr3_3:57227068-57227087 None:intergenic 30.0%
TAAGCTTGAATAGATGTATC+AGG - chr3_3:57227448-57227467 None:intergenic 30.0%
AATCATTTATTTAACAGGGC+TGG - chr3_3:57227507-57227526 None:intergenic 30.0%
TATGACATTATTTCAACCCA+GGG - chr3_3:57227756-57227775 None:intergenic 30.0%
TTATGACATTATTTCAACCC+AGG - chr3_3:57227757-57227776 None:intergenic 30.0%
TATTCTCCGATTGACATTAT+AGG + chr3_3:57227810-57227829 Msa0460170:intron 30.0%
! GACCTTGTTTATATTTGGAT+AGG + chr3_3:57227948-57227967 Msa0460170:intron 30.0%
TCCCTATCCAAATATAAACA+AGG - chr3_3:57227953-57227972 None:intergenic 30.0%
TGATGATCATTAACTGCAAA+TGG - chr3_3:57228089-57228108 None:intergenic 30.0%
! TTTTCCATTTGTAGTGAATG+AGG + chr3_3:57228109-57228128 Msa0460170:intron 30.0%
TTATCCTCATTCACTACAAA+TGG - chr3_3:57228116-57228135 None:intergenic 30.0%
! AAGAATTCAAACAGAAGCAT+TGG - chr3_3:57228349-57228368 None:intergenic 30.0%
GTAAACGAAGTTAATTGGAA+AGG - chr3_3:57228373-57228392 None:intergenic 30.0%
TGGATGTAAACGAAGTTAAT+TGG - chr3_3:57228378-57228397 None:intergenic 30.0%
! AAACCTAACACGCTATATTT+TGG - chr3_3:57228398-57228417 None:intergenic 30.0%
TTTAACTGTTAACCATTGAG+TGG + chr3_3:57228429-57228448 Msa0460170:intron 30.0%
GAATTACATTTGAAGGTAGA+AGG - chr3_3:57228660-57228679 None:intergenic 30.0%
! TTATTAGTTTAGTACGTTCG+TGG + chr3_3:57228760-57228779 Msa0460170:intron 30.0%
ACAAAGAATAAGCTCAAATG+TGG - chr3_3:57228803-57228822 None:intergenic 30.0%
ACCAGTACCATATAATGTAA+TGG + chr3_3:57228884-57228903 Msa0460170:intron 30.0%
TCCATTACATTATATGGTAC+TGG - chr3_3:57228888-57228907 None:intergenic 30.0%
ACATGACATGTTAATGAGTT+TGG + chr3_3:57228997-57229016 Msa0460170:intron 30.0%
ATGTTAATGAGTTTGGCAAA+TGG + chr3_3:57229004-57229023 Msa0460170:intron 30.0%
CACAAAATAATGTGAAAAGG+TGG + chr3_3:57229410-57229429 Msa0460170:intron 30.0%
TGCTTACATACATGATACTT+TGG + chr3_3:57229527-57229546 Msa0460170:intron 30.0%
! AAACTATTTTCTCTGGTGAA+TGG + chr3_3:57229570-57229589 Msa0460170:intron 30.0%
TGACAGCCAGTTTAAAAAAA+AGG - chr3_3:57229642-57229661 None:intergenic 30.0%
!!! TTTTTTTTAAACTGGCTGTC+AGG + chr3_3:57229641-57229660 Msa0460170:intron 30.0%
TCATAATTTCACCAAATGAG+AGG - chr3_3:57229705-57229724 None:intergenic 30.0%
! AATAGTTAAATTGGTAGTCC+TGG + chr3_3:57229728-57229747 Msa0460170:intron 30.0%
TATGAATCTCTATAAGCCAA+AGG - chr3_3:57229949-57229968 None:intergenic 30.0%
!! GTTTCTGAAACAAAAGATGT+AGG - chr3_3:57229986-57230005 None:intergenic 30.0%
!! CTTTTGTTTCAGAAACAACA+TGG + chr3_3:57229990-57230009 Msa0460170:intron 30.0%
GTTTAACATCAGGACTATTA+AGG - chr3_3:57230068-57230087 None:intergenic 30.0%
!! CCAAATTGTTGTTTAACATC+AGG - chr3_3:57230078-57230097 None:intergenic 30.0%
CCTGATGTTAAACAACAATT+TGG + chr3_3:57230075-57230094 Msa0460170:CDS 30.0%
! GATCAATTTGTTCATGCTTT+AGG + chr3_3:57230154-57230173 Msa0460170:intron 30.0%
GTTAGAAAATAAGGAGAATG+TGG - chr3_3:57230191-57230210 None:intergenic 30.0%
ATCTCTTCATCAGATCAAAT+TGG + chr3_3:57230221-57230240 Msa0460170:intron 30.0%
!! ATCTTTGAAATGACTTCTTC+GGG - chr3_3:57230254-57230273 None:intergenic 30.0%
AATGTCAGATTCAACATACA+GGG - chr3_3:57230519-57230538 None:intergenic 30.0%
AAATGTCAGATTCAACATAC+AGG - chr3_3:57230520-57230539 None:intergenic 30.0%
TTTCTTCCTCTTTACATTTC+AGG + chr3_3:57230537-57230556 Msa0460170:intron 30.0%
ACAAACAAATTAATCAAGGC+TGG - chr3_3:57230612-57230631 None:intergenic 30.0%
!! GCCTTGATTAATTTGTTTGT+TGG + chr3_3:57230612-57230631 Msa0460170:exon 30.0%
!! ATTAGCGAATTTTAGGAACT+CGG - chr3_3:57230923-57230942 None:intergenic 30.0%
CCTTAAAAAATGAATGCGAA+CGG + chr3_3:57230964-57230983 Msa0460170:three_prime_UTR 30.0%
TTTCATAAGCATATGCAACA+AGG + chr3_3:57230998-57231017 Msa0460170:three_prime_UTR 30.0%
TTCATAAGCATATGCAACAA+GGG + chr3_3:57230999-57231018 Msa0460170:three_prime_UTR 30.0%
! AGTTTGAGTACTGTTGTTTG+CGG - chr3_3:57223632-57223651 None:intergenic 35.0%
ATCAACGAAACGGAGTAAAA+GGG - chr3_3:57223707-57223726 None:intergenic 35.0%
AATCAACGAAACGGAGTAAA+AGG - chr3_3:57223708-57223727 None:intergenic 35.0%
!!! TTACTCCGTTTCGTTGATTT+TGG + chr3_3:57223709-57223728 Msa0460170:five_prime_UTR 35.0%
!!! TACTCCGTTTCGTTGATTTT+GGG + chr3_3:57223710-57223729 Msa0460170:five_prime_UTR 35.0%
!! TTGATTTTGGGGGTTTCAAA+TGG + chr3_3:57223722-57223741 Msa0460170:exon 35.0%
!!! TCTTGTGAAGAGGTTTTTTG+AGG - chr3_3:57223805-57223824 None:intergenic 35.0%
! AGAAGAAAGCCTTTCACTTT+TGG + chr3_3:57223822-57223841 Msa0460170:CDS 35.0%
!! GAAGAAAGCCTTTCACTTTT+GGG + chr3_3:57223823-57223842 Msa0460170:CDS 35.0%
! GGGACTAAATTGATAGTAAG+TGG + chr3_3:57224367-57224386 Msa0460170:intron 35.0%
TTTATTTAACCCACTTGGGT+TGG - chr3_3:57224570-57224589 None:intergenic 35.0%
!! AACCCAAGTGGGTTAAATAA+AGG + chr3_3:57224569-57224588 Msa0460170:intron 35.0%
!! ACCCAAGTGGGTTAAATAAA+GGG + chr3_3:57224570-57224589 Msa0460170:intron 35.0%
! TCCCTTTATTTAACCCACTT+GGG - chr3_3:57224574-57224593 None:intergenic 35.0%
! CTCTCTTAAAGTGTCAAAGT+TGG - chr3_3:57224597-57224616 None:intergenic 35.0%
ACAAAGTCAGACTAATTTGG+TGG + chr3_3:57224670-57224689 Msa0460170:intron 35.0%
! TGCTATGTTGAGATTTTCAG+GGG + chr3_3:57224741-57224760 Msa0460170:intron 35.0%
TGTCTCTGTAAAGTCTAAAG+TGG + chr3_3:57224837-57224856 Msa0460170:intron 35.0%
AGTCATAAGTAACACATGCT+GGG + chr3_3:57225054-57225073 Msa0460170:intron 35.0%
AGTCAAGAAACAACATCAGT+TGG + chr3_3:57225134-57225153 Msa0460170:CDS 35.0%
! TTTTACACTTGTCAACTACC+TGG + chr3_3:57225242-57225261 Msa0460170:intron 35.0%
! GTTTTCTGCACTATTTTCAG+TGG + chr3_3:57225401-57225420 Msa0460170:CDS 35.0%
TGAGTACTTGTAGAATTAGC+GGG - chr3_3:57225936-57225955 None:intergenic 35.0%
AAGAGTGAACCCAAAAAATC+AGG + chr3_3:57226074-57226093 Msa0460170:CDS 35.0%
!!! GACTCCCATTTTTTTCTTGT+TGG + chr3_3:57226118-57226137 Msa0460170:intron 35.0%
AAAACCACAGATACATCTCT+TGG - chr3_3:57226191-57226210 None:intergenic 35.0%
!!! GTTTTTTGGTCCAATGGAAA+AGG - chr3_3:57226303-57226322 None:intergenic 35.0%
TGAGTGTAAATTAGCAAGGT+GGG - chr3_3:57226395-57226414 None:intergenic 35.0%
AAAATTAGGAGTGACAACAC+AGG + chr3_3:57226563-57226582 Msa0460170:intron 35.0%
TAGGATGTTCTCATTGAACA+TGG - chr3_3:57226659-57226678 None:intergenic 35.0%
GCTTCCATGCTTGTATTATT+TGG + chr3_3:57226903-57226922 Msa0460170:intron 35.0%
CATCCCAAATAATACAAGCA+TGG - chr3_3:57226910-57226929 None:intergenic 35.0%
TACAGGTGGATAAAAAACTG+TGG - chr3_3:57227002-57227021 None:intergenic 35.0%
TAACAGTAAGTTGCCATTAC+AGG - chr3_3:57227019-57227038 None:intergenic 35.0%
TTACTGAAGGCTTCTCAAAA+TGG + chr3_3:57227303-57227322 Msa0460170:intron 35.0%
ATGTAAACTTACCATTGTCC+TGG + chr3_3:57227593-57227612 Msa0460170:intron 35.0%
!! TCCTGGTACTTTTGATGATT+TGG + chr3_3:57227610-57227629 Msa0460170:intron 35.0%
!! ACCAAATCATCAAAAGTACC+AGG - chr3_3:57227614-57227633 None:intergenic 35.0%
CCTAATCTATATCCTATCAC+AGG - chr3_3:57227637-57227656 None:intergenic 35.0%
CCTGTGATAGGATATAGATT+AGG + chr3_3:57227634-57227653 Msa0460170:intron 35.0%
! AAATCTCTAATCAGGGTGTT+AGG - chr3_3:57227728-57227747 None:intergenic 35.0%
GGACTGAAAATCTCTAATCA+GGG - chr3_3:57227735-57227754 None:intergenic 35.0%
! ATTAGAGATTTTCAGTCCCT+GGG + chr3_3:57227737-57227756 Msa0460170:intron 35.0%
! GATAGGGAAATCAGTCTTAT+CGG + chr3_3:57227965-57227984 Msa0460170:intron 35.0%
!! GGATGCTTTAGAGAAAATGA+TGG + chr3_3:57227989-57228008 Msa0460170:CDS 35.0%
!! TGCTTTAGAGAAAATGATGG+AGG + chr3_3:57227992-57228011 Msa0460170:CDS 35.0%
TACTGTCATCAGCAATTCTA+AGG - chr3_3:57228217-57228236 None:intergenic 35.0%
! AGTCCAATGTAGAGTATCAT+AGG - chr3_3:57228259-57228278 None:intergenic 35.0%
ATGATACTCTACATTGGACT+TGG + chr3_3:57228259-57228278 Msa0460170:intron 35.0%
!!! AACAGAAGCATTGGTTTTTG+TGG - chr3_3:57228340-57228359 None:intergenic 35.0%
CATCCAAAATATAGCGTGTT+AGG + chr3_3:57228392-57228411 Msa0460170:intron 35.0%
TTATGGGAAAATAGGAACCA+GGG - chr3_3:57228471-57228490 None:intergenic 35.0%
ATTATGGGAAAATAGGAACC+AGG - chr3_3:57228472-57228491 None:intergenic 35.0%
! CTTAACAATTTTCTTGCCTC+TGG + chr3_3:57228681-57228700 Msa0460170:intron 35.0%
TTAACATTGTGTAGAACCAG+AGG - chr3_3:57228700-57228719 None:intergenic 35.0%
!!! TACTGTTGCTGCTTTTGATA+GGG + chr3_3:57229037-57229056 Msa0460170:intron 35.0%
! GACTCTGAAGATACAATACA+AGG - chr3_3:57229114-57229133 None:intergenic 35.0%
ATGGAGCATAAGATCATTGA+TGG - chr3_3:57229145-57229164 None:intergenic 35.0%
AATGTGAAAAGGTGGTACAT+AGG + chr3_3:57229418-57229437 Msa0460170:intron 35.0%
TGGTGAATGGAAAAATTCTG+AGG + chr3_3:57229583-57229602 Msa0460170:intron 35.0%
ATTGGACAGATGCATAAGAT+TGG - chr3_3:57229763-57229782 None:intergenic 35.0%
TAGGTTACATGGAAGGTTAT+TGG - chr3_3:57229781-57229800 None:intergenic 35.0%
TTCCATGTAACCTAACCTTA+GGG + chr3_3:57229787-57229806 Msa0460170:intron 35.0%
AAAAGATGTAGGAGAAAGAG+TGG - chr3_3:57229975-57229994 None:intergenic 35.0%
!! TCTAGGATTTTGAAAAGCCA+TGG - chr3_3:57230297-57230316 None:intergenic 35.0%
ACCAAAATGATAAGGAGGTA+TGG + chr3_3:57230445-57230464 Msa0460170:intron 35.0%
! ACCATACCTCCTTATCATTT+TGG - chr3_3:57230449-57230468 None:intergenic 35.0%
ATGTCAGATTCAACATACAG+GGG - chr3_3:57230518-57230537 None:intergenic 35.0%
TGTCTCGCCATAAGAAAAAT+TGG + chr3_3:57230687-57230706 Msa0460170:three_prime_UTR 35.0%
!!! CCGTTCGCATTCATTTTTTA+AGG - chr3_3:57230967-57230986 None:intergenic 35.0%
!! TATTTTACGTCACTTGTTGC+AGG - chr3_3:57231029-57231048 None:intergenic 35.0%
!!! ACTCCGTTTCGTTGATTTTG+GGG + chr3_3:57223711-57223730 Msa0460170:five_prime_UTR 40.0%
AACCCCCAAAATCAACGAAA+CGG - chr3_3:57223717-57223736 None:intergenic 40.0%
!!! AGGTTTTGGGGAAGAAACAA+GGG - chr3_3:57223763-57223782 None:intergenic 40.0%
!!! AAGGTTTTGGGGAAGAAACA+AGG - chr3_3:57223764-57223783 None:intergenic 40.0%
! TTCCCCAAAACCTTTGCTTT+TGG + chr3_3:57223770-57223789 Msa0460170:CDS 40.0%
!! TCCCCAAAACCTTTGCTTTT+GGG + chr3_3:57223771-57223790 Msa0460170:CDS 40.0%
! TCCCAAAAGCAAAGGTTTTG+GGG - chr3_3:57223775-57223794 None:intergenic 40.0%
! GTCCCAAAAGCAAAGGTTTT+GGG - chr3_3:57223776-57223795 None:intergenic 40.0%
! TGTCCCAAAAGCAAAGGTTT+TGG - chr3_3:57223777-57223796 None:intergenic 40.0%
GAAGAATGTCCCAAAAGCAA+AGG - chr3_3:57223783-57223802 None:intergenic 40.0%
AAGGCTTTCTTCTTGTGAAG+AGG - chr3_3:57223815-57223834 None:intergenic 40.0%
GTGAATCTCCCAAAAGTGAA+AGG - chr3_3:57223834-57223853 None:intergenic 40.0%
TTCTTCCTCTCATGTTACCA+GGG + chr3_3:57223869-57223888 Msa0460170:CDS 40.0%
TTGAACCCAGTTGCTCAATT+TGG + chr3_3:57224203-57224222 Msa0460170:intron 40.0%
AACCACCAAATTGAGCAACT+GGG - chr3_3:57224211-57224230 None:intergenic 40.0%
! TACAAAGTCGCGTACGATTT+TGG - chr3_3:57224280-57224299 None:intergenic 40.0%
AATCGTACGCGACTTTGTAT+AGG + chr3_3:57224281-57224300 Msa0460170:intron 40.0%
! GTCCCTTTATTTAACCCACT+TGG - chr3_3:57224575-57224594 None:intergenic 40.0%
! GGGGTTTTTGTGTTCATGAT+TGG + chr3_3:57224760-57224779 Msa0460170:intron 40.0%
TTAATCGCGGAACAAGAGAA+GGG - chr3_3:57224979-57224998 None:intergenic 40.0%
ATTAATCGCGGAACAAGAGA+AGG - chr3_3:57224980-57224999 None:intergenic 40.0%
GAGTCATAAGTAACACATGC+TGG + chr3_3:57225053-57225072 Msa0460170:intron 40.0%
TGTGATTACACAGTCGAAGA+TGG - chr3_3:57225185-57225204 None:intergenic 40.0%
!!! TTTTGGATTGGTGTTGGTGT+TGG + chr3_3:57225378-57225397 Msa0460170:CDS 40.0%
!! TTTGGATTGGTGTTGGTGTT+GGG + chr3_3:57225379-57225398 Msa0460170:CDS 40.0%
ACAGGTAGCTTCAAGATTGA+AGG + chr3_3:57225526-57225545 Msa0460170:intron 40.0%
GTGAGTTCCACTTTATTGCA+AGG + chr3_3:57225548-57225567 Msa0460170:intron 40.0%
TTCCACTTTATTGCAAGGCT+TGG + chr3_3:57225553-57225572 Msa0460170:intron 40.0%
TCCACTTTATTGCAAGGCTT+GGG + chr3_3:57225554-57225573 Msa0460170:intron 40.0%
ACAAGCTTTCAAGACCATGA+TGG + chr3_3:57225812-57225831 Msa0460170:CDS 40.0%
CAAGCTTTCAAGACCATGAT+GGG + chr3_3:57225813-57225832 Msa0460170:CDS 40.0%
!! GATGCTTCTACTTTTGTTGC+AGG - chr3_3:57226014-57226033 None:intergenic 40.0%
!!! CGAATGGTTTTTTGGTCCAA+TGG - chr3_3:57226309-57226328 None:intergenic 40.0%
GTGAGTGTAAATTAGCAAGG+TGG - chr3_3:57226396-57226415 None:intergenic 40.0%
ATAAAGATTTCTCGGTGGGT+GGG - chr3_3:57226690-57226709 None:intergenic 40.0%
AATAAAGATTTCTCGGTGGG+TGG - chr3_3:57226691-57226710 None:intergenic 40.0%
GGCAATAAAGATTTCTCGGT+GGG - chr3_3:57226694-57226713 None:intergenic 40.0%
TGGCAATAAAGATTTCTCGG+TGG - chr3_3:57226695-57226714 None:intergenic 40.0%
AAGCTGCGAGATAGTATTCA+TGG - chr3_3:57226715-57226734 None:intergenic 40.0%
! TCTAGTTTGTCACAGGATAC+TGG - chr3_3:57226811-57226830 None:intergenic 40.0%
TGACGCATCAAGTTCATTCA+AGG + chr3_3:57227191-57227210 Msa0460170:CDS 40.0%
AATCGCCAAAACCTTGGTTA+GGG - chr3_3:57227335-57227354 None:intergenic 40.0%
TAGATGTATCAGGCTACACA+GGG - chr3_3:57227438-57227457 None:intergenic 40.0%
ATAGATGTATCAGGCTACAC+AGG - chr3_3:57227439-57227458 None:intergenic 40.0%
!! CATCAAAAGTACCAGGACAA+TGG - chr3_3:57227607-57227626 None:intergenic 40.0%
!! TGATGATTTGGTCCTGTGAT+AGG + chr3_3:57227622-57227641 Msa0460170:intron 40.0%
GGGACTGAAAATCTCTAATC+AGG - chr3_3:57227736-57227755 None:intergenic 40.0%
! GATTAGAGATTTTCAGTCCC+TGG + chr3_3:57227736-57227755 Msa0460170:intron 40.0%
CTGCAGCCTATAATGTCAAT+CGG - chr3_3:57227819-57227838 None:intergenic 40.0%
GTCATAAATGAGCTGCTGTA+TGG + chr3_3:57227903-57227922 Msa0460170:intron 40.0%
AAACCATCTTCTGCACAGTT+GGG - chr3_3:57228019-57228038 None:intergenic 40.0%
TAAACCATCTTCTGCACAGT+TGG - chr3_3:57228020-57228039 None:intergenic 40.0%
GTGCCTATGATACTCTACAT+TGG + chr3_3:57228253-57228272 Msa0460170:intron 40.0%
TACAAACATGCTCCACTCAA+TGG - chr3_3:57228444-57228463 None:intergenic 40.0%
TCGTGTTTGTCTCTTTCAAC+TGG + chr3_3:57228958-57228977 Msa0460170:intron 40.0%
!!! GTACTGTTGCTGCTTTTGAT+AGG + chr3_3:57229036-57229055 Msa0460170:intron 40.0%
! TCAAGTTGTTGACGATACTC+AGG - chr3_3:57229075-57229094 None:intergenic 40.0%
!!! AACGAAAGGCTCTAAGCTTT+TGG + chr3_3:57229499-57229518 Msa0460170:intron 40.0%
!! GAATGGAAAAATTCTGAGGC+AGG + chr3_3:57229587-57229606 Msa0460170:intron 40.0%
TTCAGACACTCACAATACAC+TGG + chr3_3:57229666-57229685 Msa0460170:intron 40.0%
CCAAATGAGAGGCTAATAAC+TGG - chr3_3:57229694-57229713 None:intergenic 40.0%
! CCAGTTATTAGCCTCTCATT+TGG + chr3_3:57229691-57229710 Msa0460170:intron 40.0%
! AGTTAAATTGGTAGTCCTGG+AGG + chr3_3:57229731-57229750 Msa0460170:intron 40.0%
! TAAGATTGGTCAATTCCTCC+AGG - chr3_3:57229749-57229768 None:intergenic 40.0%
CTAAGGTTAGGTTACATGGA+AGG - chr3_3:57229788-57229807 None:intergenic 40.0%
CTTCCATGTAACCTAACCTT+AGG + chr3_3:57229786-57229805 Msa0460170:intron 40.0%
TCCATGTAACCTAACCTTAG+GGG + chr3_3:57229788-57229807 Msa0460170:intron 40.0%
! ACATTTTTCTGCGATGCATC+AGG - chr3_3:57229833-57229852 None:intergenic 40.0%
TGTTTCAGAAACAACATGGG+TGG + chr3_3:57229994-57230013 Msa0460170:intron 40.0%
GACATGTCGTGTAAAATGTG+AGG - chr3_3:57230120-57230139 None:intergenic 40.0%
!!! CACGACATGTCTTTTTTGAG+AGG + chr3_3:57230129-57230148 Msa0460170:intron 40.0%
!!! GACATGTCTTTTTTGAGAGG+TGG + chr3_3:57230132-57230151 Msa0460170:intron 40.0%
ATGATAGCTGCTTGAACTCT+AGG - chr3_3:57230314-57230333 None:intergenic 40.0%
TAGAGTTCAAGCAGCTATCA+TGG + chr3_3:57230313-57230332 Msa0460170:CDS 40.0%
TGTCAGATTCAACATACAGG+GGG - chr3_3:57230517-57230536 None:intergenic 40.0%
CCATGACCTGAAATGTAAAG+AGG - chr3_3:57230546-57230565 None:intergenic 40.0%
! CCTCTTTACATTTCAGGTCA+TGG + chr3_3:57230543-57230562 Msa0460170:intron 40.0%
AAAATATCTGAGCTCTTCCC+CGG + chr3_3:57230577-57230596 Msa0460170:CDS 40.0%
ATCTCATTGCTCGTCACTAA+AGG - chr3_3:57230657-57230676 None:intergenic 40.0%
TGCTCATGACTGTATACTAC+AGG + chr3_3:57230721-57230740 Msa0460170:three_prime_UTR 40.0%
! GAGTACTGTTGTTTGCGGTA+GGG - chr3_3:57223627-57223646 None:intergenic 45.0%
! TGAGTACTGTTGTTTGCGGT+AGG - chr3_3:57223628-57223647 None:intergenic 45.0%
GAAGAGAAGAGACTTGAGAG+TGG - chr3_3:57223664-57223683 None:intergenic 45.0%
!!! CTCCGTTTCGTTGATTTTGG+GGG + chr3_3:57223712-57223731 Msa0460170:five_prime_UTR 45.0%
CTTCTTCCTCTCATGTTACC+AGG + chr3_3:57223868-57223887 Msa0460170:CDS 45.0%
GTGAGATTTAGAAGCAACCC+TGG - chr3_3:57223889-57223908 None:intergenic 45.0%
AACCCAGTTGCTCAATTTGG+TGG + chr3_3:57224206-57224225 Msa0460170:intron 45.0%
GAACCACCAAATTGAGCAAC+TGG - chr3_3:57224212-57224231 None:intergenic 45.0%
! AAAGTCGCGTACGATTTTGG+TGG - chr3_3:57224277-57224296 None:intergenic 45.0%
CGACTTTGTATAGGTCCATG+CGG + chr3_3:57224290-57224309 Msa0460170:intron 45.0%
AGATGGAGGTGGTGATAACT+GGG - chr3_3:57225168-57225187 None:intergenic 45.0%
AAGATGGAGGTGGTGATAAC+TGG - chr3_3:57225169-57225188 None:intergenic 45.0%
GATTACACAGTCGAAGATGG+AGG - chr3_3:57225182-57225201 None:intergenic 45.0%
ACACTTGTCAACTACCTGGA+AGG + chr3_3:57225246-57225265 Msa0460170:intron 45.0%
CACTTGTCAACTACCTGGAA+GGG + chr3_3:57225247-57225266 Msa0460170:intron 45.0%
TTGACAATCATCTCCCTTCC+AGG - chr3_3:57225263-57225282 None:intergenic 45.0%
CCAACACCAATCCAAAAGAG+CGG - chr3_3:57225375-57225394 None:intergenic 45.0%
ACCCAAGCCTTGCAATAAAG+TGG - chr3_3:57225558-57225577 None:intergenic 45.0%
TGTATTCATCTGGCCCATCA+TGG - chr3_3:57225829-57225848 None:intergenic 45.0%
!! GAAAAGGCACCACTGTCAAA+TGG - chr3_3:57225861-57225880 None:intergenic 45.0%
AGGTATGTCTACTGTGACAG+TGG - chr3_3:57225994-57226013 None:intergenic 45.0%
!! ACAAAAGTAGAAGCATCCCC+AGG + chr3_3:57226017-57226036 Msa0460170:CDS 45.0%
TAACATTGATGTCTGGGCCT+GGG - chr3_3:57226037-57226056 None:intergenic 45.0%
TTAACATTGATGTCTGGGCC+TGG - chr3_3:57226038-57226057 None:intergenic 45.0%
GTAACGTACAATCTCTGCTC+AGG + chr3_3:57226096-57226115 Msa0460170:intron 45.0%
TCCACCAAGAGATGTATCTG+TGG + chr3_3:57226184-57226203 Msa0460170:intron 45.0%
ACCACAGATACATCTCTTGG+TGG - chr3_3:57226188-57226207 None:intergenic 45.0%
AGTGACAACACAGGCTTAAG+TGG + chr3_3:57226572-57226591 Msa0460170:intron 45.0%
! AGCACTCTCTAGTTTGTCAC+AGG - chr3_3:57226818-57226837 None:intergenic 45.0%
!! CTAGAGAGTGCTCCCTAAAT+AGG + chr3_3:57226826-57226845 Msa0460170:intron 45.0%
! AGCATGATAGTGTGCAAGCA+AGG - chr3_3:57226968-57226987 None:intergenic 45.0%
TTGCTTGCACACTATCATGC+TGG + chr3_3:57226967-57226986 Msa0460170:intron 45.0%
CAGTAAGTTGCCATTACAGG+TGG - chr3_3:57227016-57227035 None:intergenic 45.0%
TTCTGCTGCACAGTTTCTTC+TGG - chr3_3:57227147-57227166 None:intergenic 45.0%
ATCGCCAAAACCTTGGTTAG+GGG - chr3_3:57227334-57227353 None:intergenic 45.0%
GAATCGCCAAAACCTTGGTT+AGG - chr3_3:57227336-57227355 None:intergenic 45.0%
TTACGTGCAGATTGAGAACC+CGG - chr3_3:57227360-57227379 None:intergenic 45.0%
! AGGGAAATCAGTCTTATCGG+TGG + chr3_3:57227968-57227987 Msa0460170:intron 45.0%
GACTGTGTCGCAAAACACAT+TGG - chr3_3:57228505-57228524 None:intergenic 45.0%
CTGTTGCAGCTATTTACCTG+AGG + chr3_3:57228623-57228642 Msa0460170:intron 45.0%
GCTATTTACCTGAGGAGATG+AGG + chr3_3:57228631-57228650 Msa0460170:intron 45.0%
CCATGTAACCTAACCTTAGG+GGG + chr3_3:57229789-57229808 Msa0460170:intron 45.0%
CATGTAACCTAACCTTAGGG+GGG + chr3_3:57229790-57229809 Msa0460170:intron 45.0%
ATGTAACCTAACCTTAGGGG+GGG + chr3_3:57229791-57229810 Msa0460170:intron 45.0%
GTCATTCTACGTGCTACAGT+TGG + chr3_3:57229881-57229900 Msa0460170:intron 45.0%
TGAATGGGACAGTCGAATGA+TGG + chr3_3:57230023-57230042 Msa0460170:CDS 45.0%
TGAAAAGCCATGGCAACATC+AGG - chr3_3:57230287-57230306 None:intergenic 45.0%
AAATATCTGAGCTCTTCCCC+GGG + chr3_3:57230578-57230597 Msa0460170:CDS 45.0%
GACTGTATACTACAGGCTCA+TGG + chr3_3:57230728-57230747 Msa0460170:three_prime_UTR 45.0%
AGACTTGAGAGTGGCGTAGT+GGG - chr3_3:57223655-57223674 None:intergenic 50.0%
AGCAACCCTGGTAACATGAG+AGG - chr3_3:57223877-57223896 None:intergenic 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr3_3:57224550-57224569 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr3_3:57224551-57224570 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr3_3:57224556-57224575 None:intergenic 50.0%
ACATGCTGGGAATACAGTGC+AGG + chr3_3:57225067-57225086 Msa0460170:intron 50.0%
CATGCTGGGAATACAGTGCA+GGG + chr3_3:57225068-57225087 Msa0460170:intron 50.0%
ATGCTGGGAATACAGTGCAG+GGG + chr3_3:57225069-57225088 Msa0460170:intron 50.0%
ATGGAGGTGGTGATAACTGG+GGG - chr3_3:57225166-57225185 None:intergenic 50.0%
GATGGAGGTGGTGATAACTG+GGG - chr3_3:57225167-57225186 None:intergenic 50.0%
TACACAGTCGAAGATGGAGG+TGG - chr3_3:57225179-57225198 None:intergenic 50.0%
!!! CCGCTCTTTTGGATTGGTGT+TGG + chr3_3:57225372-57225391 Msa0460170:CDS 50.0%
TGCAAGGCTTGGGTGTAAAC+TGG + chr3_3:57225564-57225583 Msa0460170:intron 50.0%
GAAAGGAGATCCAGGGGAAA+AGG - chr3_3:57225877-57225896 None:intergenic 50.0%
AAAGGGGAAAGGAGATCCAG+GGG - chr3_3:57225883-57225902 None:intergenic 50.0%
GAAAGGGGAAAGGAGATCCA+GGG - chr3_3:57225884-57225903 None:intergenic 50.0%
!! GTAGGCATTGGAAAGGGGAA+AGG - chr3_3:57225894-57225913 None:intergenic 50.0%
!! GTGGTGTAGGCATTGGAAAG+GGG - chr3_3:57225899-57225918 None:intergenic 50.0%
!! GGTGGTGTAGGCATTGGAAA+GGG - chr3_3:57225900-57225919 None:intergenic 50.0%
!! TGGTGGTGTAGGCATTGGAA+AGG - chr3_3:57225901-57225920 None:intergenic 50.0%
TTTCCAATGCCTACACCACC+AGG + chr3_3:57225900-57225919 Msa0460170:CDS 50.0%
TTCCAATGCCTACACCACCA+GGG + chr3_3:57225901-57225920 Msa0460170:CDS 50.0%
AACATTGATGTCTGGGCCTG+GGG - chr3_3:57226036-57226055 None:intergenic 50.0%
AATTAGCAGCCCTCGTGTGA+GGG - chr3_3:57226238-57226257 None:intergenic 50.0%
AAATTAGCAGCCCTCGTGTG+AGG - chr3_3:57226239-57226258 None:intergenic 50.0%
! CAAGTGCGCACCTTTTCCAT+TGG + chr3_3:57226290-57226309 Msa0460170:intron 50.0%
!! CGGTGGGTGGGTTTACTTTT+AGG - chr3_3:57226678-57226697 None:intergenic 50.0%
TCGCCAAAACCTTGGTTAGG+GGG - chr3_3:57227333-57227352 None:intergenic 50.0%
!! CCAAGGTTTTGGCGATTCTC+CGG + chr3_3:57227338-57227357 Msa0460170:CDS 50.0%
!! CAAGGTTTTGGCGATTCTCC+GGG + chr3_3:57227339-57227358 Msa0460170:CDS 50.0%
! TCAGGCTACACAGGGTTTTC+CGG - chr3_3:57227430-57227449 None:intergenic 50.0%
GAGCATGTTTGTACTCTCCC+TGG + chr3_3:57228451-57228470 Msa0460170:intron 50.0%
CCCCCTAAGGTTAGGTTACA+TGG - chr3_3:57229792-57229811 None:intergenic 50.0%
TGTAACCTAACCTTAGGGGG+GGG + chr3_3:57229792-57229811 Msa0460170:intron 50.0%
!! ACATGGGTGGAAGCACTGAA+TGG + chr3_3:57230007-57230026 Msa0460170:CDS 50.0%
!! CATGGGTGGAAGCACTGAAT+GGG + chr3_3:57230008-57230027 Msa0460170:CDS 50.0%
AGCCATGGCAACATCAGGAT+TGG - chr3_3:57230282-57230301 None:intergenic 50.0%
AATATCTGAGCTCTTCCCCG+GGG + chr3_3:57230579-57230598 Msa0460170:CDS 50.0%
GAGACTTGAGAGTGGCGTAG+TGG - chr3_3:57223656-57223675 None:intergenic 55.0%
AGTGTGCTCCTCTCTTCAGG+GGG - chr3_3:57224520-57224539 None:intergenic 55.0%
GAGTGTGCTCCTCTCTTCAG+GGG - chr3_3:57224521-57224540 None:intergenic 55.0%
GGAGTGTGCTCCTCTCTTCA+GGG - chr3_3:57224522-57224541 None:intergenic 55.0%
TGGAGTGTGCTCCTCTCTTC+AGG - chr3_3:57224523-57224542 None:intergenic 55.0%
! GAAGAGAGGAGCACACTCCA+AGG + chr3_3:57224523-57224542 Msa0460170:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+TGG - chr3_3:57224543-57224562 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG + chr3_3:57224544-57224563 Msa0460170:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr3_3:57224557-57224576 Msa0460170:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr3_3:57224558-57224577 Msa0460170:intron 55.0%
GGAAAGGGGAAAGGAGATCC+AGG - chr3_3:57225885-57225904 None:intergenic 55.0%
! GTAGAATTAGCGGGTGCAGC+AGG - chr3_3:57225927-57225946 None:intergenic 55.0%
ATTAGCAGCCCTCGTGTGAG+GGG - chr3_3:57226237-57226256 None:intergenic 55.0%
AATGGAGCTCCCCCTAACCA+AGG + chr3_3:57227321-57227340 Msa0460170:CDS 55.0%
! GCTCCCCCTAACCAAGGTTT+TGG + chr3_3:57227327-57227346 Msa0460170:CDS 55.0%
CCGGAGAATCGCCAAAACCT+TGG - chr3_3:57227341-57227360 None:intergenic 55.0%
GGACCCAACTGTGCAGAAGA+TGG + chr3_3:57228013-57228032 Msa0460170:CDS 55.0%
GAAGGGTTCCTCATCTCCTC+AGG - chr3_3:57228642-57228661 None:intergenic 55.0%
ATACATGCATCCCCCCCCTA+AGG - chr3_3:57229805-57229824 None:intergenic 55.0%
GGCCAATCCTGATGTTGCCA+TGG + chr3_3:57230277-57230296 Msa0460170:CDS 55.0%
TGTGCTCCTCTCTTCAGGGG+GGG - chr3_3:57224518-57224537 None:intergenic 60.0%
GTGTGCTCCTCTCTTCAGGG+GGG - chr3_3:57224519-57224538 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr3_3:57224562-57224581 None:intergenic 60.0%
! CTAGAGGGTCGCCGCTCTTT+TGG + chr3_3:57225361-57225380 Msa0460170:intron 60.0%
! GGGTCGCCGCTCTTTTGGAT+TGG + chr3_3:57225366-57225385 Msa0460170:CDS 60.0%
! GACAGTGGTGCCTTTTCCCC+TGG + chr3_3:57225864-57225883 Msa0460170:CDS 60.0%
TTAGCAGCCCTCGTGTGAGG+GGG - chr3_3:57226236-57226255 None:intergenic 60.0%
TGCATCCCCCCCCTAAGGTT+AGG - chr3_3:57229800-57229819 None:intergenic 60.0%
!! CTTCAGGGGGGGGGCTAGTT+TGG - chr3_3:57224507-57224526 None:intergenic 65.0%
TGCTCCTCTCTTCAGGGGGG+GGG - chr3_3:57224516-57224535 None:intergenic 65.0%
GTGCTCCTCTCTTCAGGGGG+GGG - chr3_3:57224517-57224536 None:intergenic 65.0%
! GGCCCTGGTGGTGTAGGCAT+TGG - chr3_3:57225906-57225925 None:intergenic 65.0%
AAGCCATGCCCCCTCACACG+AGG + chr3_3:57226225-57226244 Msa0460170:intron 65.0%
AGCCATGCCCCCTCACACGA+GGG + chr3_3:57226226-57226245 Msa0460170:intron 65.0%
!! TCAAGGCTGGCCTGACACCC+CGG - chr3_3:57230599-57230618 None:intergenic 65.0%
CTAGCCCCCCCCCTGAAGAG+AGG + chr3_3:57224509-57224528 Msa0460170:intron 70.0%
! GCAGCAGGCCCTGGTGGTGT+AGG - chr3_3:57225912-57225931 None:intergenic 70.0%
! TTAGCGGGTGCAGCAGGCCC+TGG - chr3_3:57225921-57225940 None:intergenic 70.0%
AGCCCTCGTGTGAGGGGGCA+TGG - chr3_3:57226231-57226250 None:intergenic 70.0%
! GAGCTCTTCCCCGGGGTGTC+AGG + chr3_3:57230586-57230605 Msa0460170:CDS 70.0%
!! AAGGCTGGCCTGACACCCCG+GGG - chr3_3:57230597-57230616 None:intergenic 70.0%
!! CAAGGCTGGCCTGACACCCC+GGG - chr3_3:57230598-57230617 None:intergenic 70.0%
! GCGGGTGCAGCAGGCCCTGG+TGG - chr3_3:57225918-57225937 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 57223593 57231052 57223593 ID=Msa0460170;Name=Msa0460170
chr3_3 mRNA 57223593 57231052 57223593 ID=Msa0460170-mRNA-1;Parent=Msa0460170;Name=Msa0460170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|1|1|14|434|432
chr3_3 exon 57223593 57223924 57223593 ID=Msa0460170-mRNA-1:exon:11616;Parent=Msa0460170-mRNA-1
chr3_3 exon 57225084 57225195 57225084 ID=Msa0460170-mRNA-1:exon:11617;Parent=Msa0460170-mRNA-1
chr3_3 exon 57225365 57225422 57225365 ID=Msa0460170-mRNA-1:exon:11618;Parent=Msa0460170-mRNA-1
chr3_3 exon 57225530 57225547 57225530 ID=Msa0460170-mRNA-1:exon:11619;Parent=Msa0460170-mRNA-1
chr3_3 exon 57225798 57226095 57225798 ID=Msa0460170-mRNA-1:exon:11620;Parent=Msa0460170-mRNA-1
chr3_3 exon 57227127 57227224 57227127 ID=Msa0460170-mRNA-1:exon:11621;Parent=Msa0460170-mRNA-1
chr3_3 exon 57227312 57227375 57227312 ID=Msa0460170-mRNA-1:exon:11622;Parent=Msa0460170-mRNA-1
chr3_3 exon 57227970 57228042 57227970 ID=Msa0460170-mRNA-1:exon:11623;Parent=Msa0460170-mRNA-1
chr3_3 exon 57228632 57228672 57228632 ID=Msa0460170-mRNA-1:exon:11624;Parent=Msa0460170-mRNA-1
chr3_3 exon 57229058 57229103 57229058 ID=Msa0460170-mRNA-1:exon:11625;Parent=Msa0460170-mRNA-1
chr3_3 exon 57230002 57230096 57230002 ID=Msa0460170-mRNA-1:exon:11626;Parent=Msa0460170-mRNA-1
chr3_3 exon 57230234 57230337 57230234 ID=Msa0460170-mRNA-1:exon:11627;Parent=Msa0460170-mRNA-1
chr3_3 exon 57230414 57230461 57230414 ID=Msa0460170-mRNA-1:exon:11628;Parent=Msa0460170-mRNA-1
chr3_3 exon 57230559 57231052 57230559 ID=Msa0460170-mRNA-1:exon:11629;Parent=Msa0460170-mRNA-1
chr3_3 five_prime_UTR 57223593 57223740 57223593 ID=Msa0460170-mRNA-1:five_prime_utr;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57223741 57223924 57223741 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57225084 57225195 57225084 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57225365 57225422 57225365 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57225530 57225547 57225530 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57225798 57226095 57225798 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57227127 57227224 57227127 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57227312 57227375 57227312 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57227970 57228042 57227970 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57228632 57228672 57228632 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57229058 57229103 57229058 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57230002 57230096 57230002 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57230234 57230337 57230234 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57230414 57230461 57230414 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 CDS 57230559 57230618 57230559 ID=Msa0460170-mRNA-1:cds;Parent=Msa0460170-mRNA-1
chr3_3 three_prime_UTR 57230619 57231052 57230619 ID=Msa0460170-mRNA-1:three_prime_utr;Parent=Msa0460170-mRNA-1
Gene Sequence

>Msa0460170

ATGGAGAATCTTAATTTAGCCCTTGTTTCTTCCCCAAAACCTTTGCTTTTGGGACATTCTTCCTCAAAAAACCTCTTCACAAGAAGAAAGCCTTTCACTTTTGGGAGATTCACTTTTTCTGCTAACTCTTCTTCCTCTCATGTTACCAGGGTTGCTTCTAAATCTCACCAAAATCTAAAATCTGTGCAGGGGAAAGTGACAGTGCATAACTTTGCTAGCGTTTCTTCTTCAAATAGTCAAGAAACAACATCAGTTGGAGTTAGCCCCCAGTTATCACCACCTCCATCTTCGACTGTAGGGTCGCCGCTCTTTTGGATTGGTGTTGGTGTTGGGTTTTCTGCACTATTTTCAGTGGTAGCTTCAAGATTGAAGAAATATGCAATGCAACAAGCTTTCAAGACCATGATGGGCCAGATGAATACACAAAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCTTTCCCCTTTCCAATGCCTACACCACCAGGGCCTGCTGCACCCGCTAATTCTACAAGTACTCAATCACAAGCATCTTCTGCACGAACTGCATCTCAATCCACTGTCACAGTAGACATACCTGCAACAAAAGTAGAAGCATCCCCAGGCCCAGACATCAATGTTAAAGATGAAGTAGAAGTAAAGAGTGAACCCAAAAAATCAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGCAGAATGCTTTTGAAAGATTTAAGGATGTTGACGCATCAAGTTCATTCAAGGAAGCAGCAGAAGCTTCTCAAAATGGAGCTCCCCCTAACCAAGGTTTTGGCGATTCTCCGGGTTCTCAATCTGCACGGAAATCAGTCTTATCGGTGGATGCTTTAGAGAAAATGATGGAGGACCCAACTGTGCAGAAGATGGTTTACCCCTATTTACCTGAGGAGATGAGGAACCCTTCTACCTTCAAATGGATGCTGCAGAATCCTGAGTATCGTCAACAACTTGAAGAAATGCTAAACAACATGGGTGGAAGCACTGAATGGGACAGTCGAATGATGGACACCTTAAAAAATTTCGACCTTAATAGTCCTGATGTTAAACAACAATTTGATCAAATTGGACTTTCTCCCGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGATGTTGCCATGGCTTTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATTGTTCACAGAATCCAATGAATATTGCTAAATACCAAAATGATAAGGAGGTCATGGATGTCTTCAATAAAATATCTGAGCTCTTCCCCGGGGTGTCAGGCCAGCCTTGA

Protein sequence

>Msa0460170

MENLNLALVSSPKPLLLGHSSSKNLFTRRKPFTFGRFTFSANSSSSHVTRVASKSHQNLKSVQGKVTVHNFASVSSSNSQETTSVGVSPQLSPPPSSTVGSPLFWIGVGVGFSALFSVVASRLKKYAMQQAFKTMMGQMNTQNNPFDSGAFSPGSPFPFPMPTPPGPAAPANSTSTQSQASSARTASQSTVTVDIPATKVEASPGPDINVKDEVEVKSEPKKSAFVDVSPEETVQQNAFERFKDVDASSSFKEAAEASQNGAPPNQGFGDSPGSQSARKSVLSVDALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPEYRQQLEEMLNNMGGSTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMNIAKYQNDKEVMDVFNKISELFPGVSGQP*