AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080680 MtrunA17_Chr7g0267151 98.099 263 5 0 2 264 3 265 0.0 525
Msa1080680 MtrunA17_Chr1g0177361 83.883 273 29 6 1 264 1 267 1.05e-153 429
Msa1080680 MtrunA17_Chr4g0052651 31.111 180 114 3 73 247 6 180 6.68e-23 93.6
Msa1080680 MtrunA17_Chr4g0070091 30.994 171 102 5 59 228 66 221 4.15e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080680 AT5G06290.1 90.741 216 18 2 50 264 59 273 5.35e-144 405
Msa1080680 AT3G11630.1 91.667 204 16 1 62 264 63 266 6.00e-140 394
Msa1080680 AT5G06290.2 87.845 181 20 2 50 229 59 238 2.55e-113 326
Msa1080680 AT1G48130.1 30.114 176 118 2 73 247 6 177 5.14e-23 94.0
Msa1080680 AT3G26060.3 34.194 155 90 4 74 227 10 153 1.16e-16 75.5
Msa1080680 AT3G26060.1 33.758 157 88 5 74 227 72 215 2.94e-16 75.9
Msa1080680 AT3G26060.2 33.758 157 88 5 74 227 73 216 3.25e-16 75.9

Find 104 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGTGTACACCTTGATTT+TGG 0.190910 7_2:+80258122 Msa1080680:three_prime_UTR
TTGCGCATCATAACTTAAAA+TGG 0.199343 7_2:-80258079 None:intergenic
GGGAGGGAAGTGCGTAGTTT+AGG 0.215883 7_2:-80253486 None:intergenic
AATAATACTTTCATTTATAA+TGG 0.234593 7_2:+80258207 Msa1080680:three_prime_UTR
GTTAAACTATCTGAATATAT+TGG 0.248804 7_2:+80254927 Msa1080680:CDS
TTGGGAGAGAAGAGGATGTT+AGG 0.252613 7_2:-80253405 None:intergenic
GGGAGAGAATTGGAGGAATT+GGG 0.258409 7_2:-80253465 None:intergenic
ATACTTTATCTCTCTATCTT+TGG 0.267768 7_2:+80253302 Msa1080680:five_prime_UTR
AGTACTCTTTGCTAAGTTTA+GGG 0.275142 7_2:-80257956 None:intergenic
AAGTACTCTTTGCTAAGTTT+AGG 0.277836 7_2:-80257957 None:intergenic
ATGTGGTGGAGAAGATAATT+TGG 0.278915 7_2:-80253424 None:intergenic
AGGGAGAGAATTGGAGGAAT+TGG 0.282783 7_2:-80253466 None:intergenic
GGAACTTAATACAGAGATAT+TGG 0.285595 7_2:+80255127 Msa1080680:CDS
GGAGGGAAGTGCGTAGTTTA+GGG 0.295279 7_2:-80253485 None:intergenic
GTATCGATTGGGGATGTAAA+AGG 0.296126 7_2:+80258034 Msa1080680:three_prime_UTR
AAGTTTAGGGTCTGGTTTCA+TGG 0.308012 7_2:-80257943 None:intergenic
CCCGATGAAGTTTGCCCTGC+TGG 0.308593 7_2:+80257900 Msa1080680:CDS
TGGGAGAGAAGAGGATGTTA+GGG 0.369953 7_2:-80253404 None:intergenic
TGCCCTGCTGGGTGGAAGCC+TGG 0.371090 7_2:+80257912 Msa1080680:CDS
TGTGGTGGAGAAGATAATTT+GGG 0.380711 7_2:-80253423 None:intergenic
AAATCCATATCAAAATCTTA+TGG 0.385045 7_2:+80257316 Msa1080680:CDS
TTCACATTTGTTTGCCCCAC+AGG 0.386111 7_2:+80254987 Msa1080680:CDS
TTAAACTATCTGAATATATT+GGG 0.386115 7_2:+80254928 Msa1080680:CDS
CCAGCAGGGCAAACTTCATC+GGG 0.387505 7_2:-80257900 None:intergenic
ACAGCCTCAGCTTCAAAATC+TGG 0.388070 7_2:-80254808 None:intergenic
TGTAGTTCTCGCACCTTGCA+TGG 0.388525 7_2:+80257227 Msa1080680:intron
GTGTCAAAATTTACCTGATC+AGG 0.391100 7_2:-80257349 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.396767 7_2:+80257336 Msa1080680:CDS
ACCATCAACAACCTCGGAAT+TGG 0.399693 7_2:+80257674 Msa1080680:CDS
GCGTAGTTTAGGGAGAGAAT+TGG 0.401138 7_2:-80253475 None:intergenic
ACAGATAAGAACAGAAGAAA+TGG 0.403614 7_2:-80258166 None:intergenic
AGAAGCAGATGGAGCTGAGC+AGG 0.404326 7_2:-80253367 None:intergenic
AGGAGCGGTTGAGGGAAAGA+GGG 0.413713 7_2:-80253506 None:intergenic
GGTTTCATGGACTTCTCACC+AGG 0.417997 7_2:-80257930 None:intergenic
TCACCAGGCTTCCACCCAGC+AGG 0.418832 7_2:-80257915 None:intergenic
GAGAAGAAGAGGAGCGGTTG+AGG 0.419127 7_2:-80253515 None:intergenic
GAGGAGCGGTTGAGGGAAAG+AGG 0.420689 7_2:-80253507 None:intergenic
TCTTTGCTAAGTTTAGGGTC+TGG 0.422181 7_2:-80257951 None:intergenic
ACTGCTCATCTGTATCGATT+GGG 0.429908 7_2:+80258023 Msa1080680:three_prime_UTR
ACCAATTCCGAGGTTGTTGA+TGG 0.432822 7_2:-80257675 None:intergenic
GACAGAAAGTCCGGTGGTCT+CGG 0.433149 7_2:+80257259 Msa1080680:CDS
AACTGCTCATCTGTATCGAT+TGG 0.445433 7_2:+80258022 Msa1080680:three_prime_UTR
GAACTTAATACAGAGATATT+GGG 0.451651 7_2:+80255128 Msa1080680:CDS
GGCGCAGCGTTCCCAACTAA+TGG 0.459593 7_2:-80254787 None:intergenic
AAGAGCGAACTACCATTAGT+TGG 0.460962 7_2:+80254775 Msa1080680:intron
TTTGGCTTCTTCTACCTCAC+AGG 0.463915 7_2:+80253320 Msa1080680:five_prime_UTR
CCCAGCAGGGCAAACTTCAT+CGG 0.471666 7_2:-80257901 None:intergenic
AGCGGTTGAGGGAAAGAGGG+AGG 0.482247 7_2:-80253503 None:intergenic
GGAGAGAATTGGAGGAATTG+GGG 0.485152 7_2:-80253464 None:intergenic
TGACCGCCATGCAGAATTTG+CGG 0.486264 7_2:+80255106 Msa1080680:CDS
GTGTTGTTATTAAAGCATAT+CGG 0.494699 7_2:+80258104 Msa1080680:three_prime_UTR
TGTTCATTATTGACAAGGAA+GGG 0.497591 7_2:+80257636 Msa1080680:CDS
ATGCTTCACCTCCACCCATT+CGG 0.501591 7_2:-80253228 None:intergenic
TTCTGTGATTTAAGTAAGCA+AGG 0.504638 7_2:+80258248 Msa1080680:three_prime_UTR
GCGGTTGAGGGAAAGAGGGA+GGG 0.507328 7_2:-80253502 None:intergenic
GAAACTGCGGCGAGAAGAAG+AGG 0.508647 7_2:-80253526 None:intergenic
CTTACTTAAATCACAGAACA+AGG 0.511073 7_2:-80258243 None:intergenic
AGAAGAAGAGGAGCGGTTGA+GGG 0.511653 7_2:-80253514 None:intergenic
GTAGTTCTCGCACCTTGCAT+GGG 0.512924 7_2:+80257228 Msa1080680:intron
CATAATTCACTCCAAAATCA+AGG 0.515253 7_2:-80258133 None:intergenic
AAACAAATGTGAAGTCCAAT+GGG 0.523515 7_2:-80254977 None:intergenic
TAGTTTAGGGAGAGAATTGG+AGG 0.527220 7_2:-80253472 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 7_2:+80257635 Msa1080680:CDS
AAGATAATTTGGGAGAGAAG+AGG 0.533309 7_2:-80253413 None:intergenic
AGAGCGAACTACCATTAGTT+GGG 0.537134 7_2:+80254776 Msa1080680:intron
CAAACAAATGTGAAGTCCAA+TGG 0.543653 7_2:-80254978 None:intergenic
GAGAGAGAAGAAAGATGTGG+TGG 0.544776 7_2:-80253438 None:intergenic
CCGATGAAGTTTGCCCTGCT+GGG 0.550218 7_2:+80257901 Msa1080680:CDS
GCAGGCCTTGCAATACGTGC+AGG 0.551362 7_2:+80257872 Msa1080680:intron
AGAATTGGAGGAATTGGGGA+TGG 0.555868 7_2:-80253460 None:intergenic
GTTCTCCTGCACGTATTGCA+AGG 0.557103 7_2:-80257877 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 7_2:+80257637 Msa1080680:CDS
AGGTGGGGTTGGAGCCTCTG+AGG 0.558608 7_2:+80253273 Msa1080680:five_prime_UTR
TGAGACAAAGAGAACACTCC+AGG 0.563249 7_2:+80257709 Msa1080680:CDS
GTTCAAACAGACAGAAAGTC+CGG 0.564704 7_2:+80257250 Msa1080680:CDS
GGTTGTTGATGGTAGAATGT+TGG 0.565020 7_2:-80257664 None:intergenic
TGAAATAGTGTCCGAATGGG+TGG 0.576276 7_2:+80253217 Msa1080680:five_prime_UTR
CACCAGGCTTCCACCCAGCA+GGG 0.584088 7_2:-80257914 None:intergenic
GAAGATAAGAGAGAAGCAGA+TGG 0.588346 7_2:-80253378 None:intergenic
TGTCTGTTTGAACCCATGCA+AGG 0.591033 7_2:-80257240 None:intergenic
CTGCTCATCTGTATCGATTG+GGG 0.599468 7_2:+80258024 Msa1080680:three_prime_UTR
ATTTAGGGGATAGCATTGAG+AGG 0.608578 7_2:+80257611 Msa1080680:intron
GTTCAAGTCACCGAGACCAC+CGG 0.609395 7_2:-80257269 None:intergenic
TCATCACACTCACTCAAACA+TGG 0.612785 7_2:+80253344 Msa1080680:exon
AACTTGAAATAGTGTCCGAA+TGG 0.617017 7_2:+80253213 Msa1080680:five_prime_UTR
ACTTGAAATAGTGTCCGAAT+GGG 0.618416 7_2:+80253214 Msa1080680:five_prime_UTR
CAACACTTCTACCAATTCCG+AGG 0.625459 7_2:-80257685 None:intergenic
TAAGTTCCGCAAATTCTGCA+TGG 0.626665 7_2:-80255112 None:intergenic
AGGATTGTTCATTATTGACA+AGG 0.639152 7_2:+80257631 Msa1080680:CDS
ATGGAGAGAGAAGAAAGATG+TGG 0.640784 7_2:-80253441 None:intergenic
CATTCTACCATCAACAACCT+CGG 0.642105 7_2:+80257668 Msa1080680:CDS
GGGTGTTTCAGTTGACAGTG+TGG 0.646005 7_2:+80255148 Msa1080680:CDS
TTGGTGACATCAGATACTAA+AGG 0.646692 7_2:-80257295 None:intergenic
AATAGTGTCCGAATGGGTGG+AGG 0.656627 7_2:+80253220 Msa1080680:five_prime_UTR
ATGAAGTTTGCCCTGCTGGG+TGG 0.658136 7_2:+80257904 Msa1080680:CDS
TTACTTAAATCACAGAACAA+GGG 0.660306 7_2:-80258242 None:intergenic
TAAAGTATATTATACCTCAG+AGG 0.685656 7_2:-80253287 None:intergenic
TGCGGCGAGAAGAAGAGGAG+CGG 0.686466 7_2:-80253521 None:intergenic
AAGCTTTAACGACGAAACTG+CGG 0.686884 7_2:-80253539 None:intergenic
GTTCCGCAAATTCTGCATGG+CGG 0.722852 7_2:-80255109 None:intergenic
GTGAGTGTGATGAGCCTGTG+AGG 0.729084 7_2:-80253334 None:intergenic
AAAGGGTCGACCAACCTGTG+GGG 0.742883 7_2:-80255001 None:intergenic
CAAACAGACAGAAAGTCCGG+TGG 0.767889 7_2:+80257253 Msa1080680:CDS
CAGCAGGGCAAACTTCATCG+GGG 0.776185 7_2:-80257899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATACTAATCT+AGG + chr7_2:80255529-80255548 Msa1080680:intron 10.0%
!! TAAAGAAAATGTAAATAAAA+GGG - chr7_2:80255637-80255656 None:intergenic 10.0%
!! TATATATATATATATGAGTT+AGG - chr7_2:80256811-80256830 None:intergenic 10.0%
!!! TTTAATTTCAATATATTATC+TGG + chr7_2:80257430-80257449 Msa1080680:intron 10.0%
!! AATAATACTTTCATTTATAA+TGG + chr7_2:80258207-80258226 Msa1080680:three_prime_UTR 10.0%
!! TGAGTTTATAAAATTACTTT+CGG + chr7_2:80253682-80253701 Msa1080680:intron 15.0%
!!! ACTTTTTATAATGTAGTATA+AGG + chr7_2:80253833-80253852 Msa1080680:intron 15.0%
!!! CTTTTTATAATGTAGTATAA+GGG + chr7_2:80253834-80253853 Msa1080680:intron 15.0%
!!! TTTTTCAATTAAGAATACAT+GGG - chr7_2:80254037-80254056 None:intergenic 15.0%
!!! TTTTTTCAATTAAGAATACA+TGG - chr7_2:80254038-80254057 None:intergenic 15.0%
!! TTGAATAATTAAAAACAAGA+TGG + chr7_2:80254555-80254574 Msa1080680:intron 15.0%
!! TTAAACTATCTGAATATATT+GGG + chr7_2:80254928-80254947 Msa1080680:CDS 15.0%
!! AGGACTAATTATTAAAATTA+AGG - chr7_2:80255184-80255203 None:intergenic 15.0%
!! TCAATAAATTATAAATGTCT+GGG - chr7_2:80255238-80255257 None:intergenic 15.0%
!! ATCAATAAATTATAAATGTC+TGG - chr7_2:80255239-80255258 None:intergenic 15.0%
!! CTAAAGAAAATGTAAATAAA+AGG - chr7_2:80255638-80255657 None:intergenic 15.0%
!!! TTATTTATAAATTAGTTTGC+TGG - chr7_2:80255731-80255750 None:intergenic 15.0%
!! ATATATATATATATAGAGAC+AGG + chr7_2:80255845-80255864 Msa1080680:intron 15.0%
!! AATATGTATTATTATTGACA+TGG + chr7_2:80256365-80256384 Msa1080680:intron 15.0%
!! ATATGTATTATTATTGACAT+GGG + chr7_2:80256366-80256385 Msa1080680:intron 15.0%
!! TTAAATCTAATTAAGAAACA+TGG + chr7_2:80256417-80256436 Msa1080680:intron 15.0%
!! TAAATCTAATTAAGAAACAT+GGG + chr7_2:80256418-80256437 Msa1080680:intron 15.0%
!! ATTTATTCATTTCATTGTTA+AGG - chr7_2:80256710-80256729 None:intergenic 15.0%
!!! TTTTTTATTCCACTTTTTTT+CGG + chr7_2:80257557-80257576 Msa1080680:intron 15.0%
!!! TAACATCCATCTTATTTTTT+AGG + chr7_2:80253253-80253272 Msa1080680:five_prime_UTR 20.0%
!! AAGTTTCATTAAAATGAGTT+TGG + chr7_2:80253727-80253746 Msa1080680:intron 20.0%
!! TAAGCTATAAGCTAAAAAAT+TGG - chr7_2:80253874-80253893 None:intergenic 20.0%
!! ATATTTATAAGCTAGTACAA+CGG + chr7_2:80254097-80254116 Msa1080680:intron 20.0%
!!! CTATCTTTTACAAATTCAAT+CGG + chr7_2:80254128-80254147 Msa1080680:intron 20.0%
!! GTTAAACTATCTGAATATAT+TGG + chr7_2:80254927-80254946 Msa1080680:CDS 20.0%
!! TACAACTATAGTTTACTAAA+GGG - chr7_2:80255021-80255040 None:intergenic 20.0%
!! ATATAAGAGTTAACAATAGA+AGG - chr7_2:80255204-80255223 None:intergenic 20.0%
!! CAATAAATTATAAATGTCTG+GGG - chr7_2:80255237-80255256 None:intergenic 20.0%
!! ATTTATTGATATGACATTGT+TGG + chr7_2:80255249-80255268 Msa1080680:intron 20.0%
!! GTATATATAAAAAACGTGAA+GGG - chr7_2:80255523-80255542 None:intergenic 20.0%
!! AGTATATATAAAAAACGTGA+AGG - chr7_2:80255524-80255543 None:intergenic 20.0%
!! CATTAGATTAATTAAATGGA+TGG - chr7_2:80255918-80255937 None:intergenic 20.0%
!! CATCCATTTAATTAATCTAA+TGG + chr7_2:80255916-80255935 Msa1080680:intron 20.0%
!! ACACCATTAGATTAATTAAA+TGG - chr7_2:80255922-80255941 None:intergenic 20.0%
!! ATCAAATATTGAATTGATTG+TGG - chr7_2:80256331-80256350 None:intergenic 20.0%
!!! ATTTTAATTGAATCGAATAG+TGG - chr7_2:80256395-80256414 None:intergenic 20.0%
!!! TTTTTTTTGCTATGATCAAT+TGG + chr7_2:80256590-80256609 Msa1080680:intron 20.0%
!!! ATTCTTTGTTTTGATCTTAA+TGG - chr7_2:80256738-80256757 None:intergenic 20.0%
!! ATTAAGATCAAAACAAAGAA+TGG + chr7_2:80256737-80256756 Msa1080680:intron 20.0%
!!! ATTTTGACTTTCCATTATTT+AGG - chr7_2:80256993-80257012 None:intergenic 20.0%
!!! ATAAGATTTTGATATGGATT+TGG - chr7_2:80257317-80257336 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG + chr7_2:80257316-80257335 Msa1080680:CDS 20.0%
!!! TATTATCTGGAATGAAATAT+AGG + chr7_2:80257443-80257462 Msa1080680:intron 20.0%
!!! ATCCATCTTATTTTTTAGGT+GGG + chr7_2:80253257-80253276 Msa1080680:five_prime_UTR 25.0%
! TAAAGTATATTATACCTCAG+AGG - chr7_2:80253290-80253309 None:intergenic 25.0%
! ATACTTTATCTCTCTATCTT+TGG + chr7_2:80253302-80253321 Msa1080680:five_prime_UTR 25.0%
!! TGATACCATCTTAGAATTTT+AGG + chr7_2:80254356-80254375 Msa1080680:intron 25.0%
! AAGTTACAACAGTCAATAAT+TGG - chr7_2:80254668-80254687 None:intergenic 25.0%
! CTACAACTATAGTTTACTAA+AGG - chr7_2:80255022-80255041 None:intergenic 25.0%
! GAACTTAATACAGAGATATT+GGG + chr7_2:80255128-80255147 Msa1080680:CDS 25.0%
!!! TGAACACTCTTTATTTTCTT+CGG - chr7_2:80255372-80255391 None:intergenic 25.0%
!!! ATAAAGAGTGTTCAAAGATT+TGG + chr7_2:80255378-80255397 Msa1080680:intron 25.0%
! AAAATATGTAAGACAGTAAG+TGG - chr7_2:80255405-80255424 None:intergenic 25.0%
!!! GTTTTAAACTCAGTTTGTAT+AGG + chr7_2:80255676-80255695 Msa1080680:intron 25.0%
!!! AGAAAATTTTGGGGATAATT+AGG - chr7_2:80256012-80256031 None:intergenic 25.0%
! AAGTAGAATTGAGTAATTCA+TGG - chr7_2:80256064-80256083 None:intergenic 25.0%
! ATTTAGGGAATAATTAGACA+CGG - chr7_2:80255939-80255958 None:intergenic 25.0%
!!! AGAAAATTTTGGGGATAATT+AGG - chr7_2:80256012-80256031 None:intergenic 25.0%
! AAGTAGAATTGAGTAATTCA+TGG - chr7_2:80256064-80256083 None:intergenic 25.0%
! ATTCATTTCATTGTTAAGGT+GGG - chr7_2:80256706-80256725 None:intergenic 25.0%
! TATTCATTTCATTGTTAAGG+TGG - chr7_2:80256707-80256726 None:intergenic 25.0%
! AACTATTCTATTCTTCCATA+CGG - chr7_2:80256956-80256975 None:intergenic 25.0%
! TATGGAAGAATAGAATAGTT+TGG + chr7_2:80256956-80256975 Msa1080680:intron 25.0%
! ATGGAAGAATAGAATAGTTT+GGG + chr7_2:80256957-80256976 Msa1080680:intron 25.0%
!!! AACACCATAAGATTTTGATA+TGG - chr7_2:80257323-80257342 None:intergenic 25.0%
! CAAAAGACATTGAATTTGAT+AGG - chr7_2:80257407-80257426 None:intergenic 25.0%
! AAAAAACAGATGACTAAATG+TGG - chr7_2:80257777-80257796 None:intergenic 25.0%
! GTAGAACATAGAAAGATAAA+AGG - chr7_2:80257812-80257831 None:intergenic 25.0%
!! GTGTTGTTATTAAAGCATAT+CGG + chr7_2:80258104-80258123 Msa1080680:three_prime_UTR 25.0%
! TTACTTAAATCACAGAACAA+GGG - chr7_2:80258245-80258264 None:intergenic 25.0%
!!! CATCCATCTTATTTTTTAGG+TGG + chr7_2:80253256-80253275 Msa1080680:five_prime_UTR 30.0%
!!! TCCATCTTATTTTTTAGGTG+GGG + chr7_2:80253258-80253277 Msa1080680:five_prime_UTR 30.0%
!! TGAGCTTATGTGTTTTGTTA+TGG + chr7_2:80253591-80253610 Msa1080680:intron 30.0%
GCATCTATCAATTGATAAAC+TGG - chr7_2:80253643-80253662 None:intergenic 30.0%
CCAAACACTACAAATTCAAT+CGG + chr7_2:80254163-80254182 Msa1080680:intron 30.0%
TATACATCTTAGCCTCTATT+TGG - chr7_2:80254244-80254263 None:intergenic 30.0%
AAATAGAGGCTAAGATGTAT+AGG + chr7_2:80254243-80254262 Msa1080680:intron 30.0%
AATAGAGGCTAAGATGTATA+GGG + chr7_2:80254244-80254263 Msa1080680:intron 30.0%
CTAAGATGTATAGGGTAAAA+TGG + chr7_2:80254252-80254271 Msa1080680:intron 30.0%
TATTAGAGACATTGCTTTCA+TGG + chr7_2:80254287-80254306 Msa1080680:intron 30.0%
AGTCTATCCAAAGATTCATT+GGG - chr7_2:80254335-80254354 None:intergenic 30.0%
AAGTCTATCCAAAGATTCAT+TGG - chr7_2:80254336-80254355 None:intergenic 30.0%
!! ACCATCTTAGAATTTTAGGT+TGG + chr7_2:80254360-80254379 Msa1080680:intron 30.0%
!!! CCATCTTAGAATTTTAGGTT+GGG + chr7_2:80254361-80254380 Msa1080680:intron 30.0%
AAGATATAAGGTCTGAACAT+GGG - chr7_2:80254443-80254462 None:intergenic 30.0%
! TTTTGATCAGGAGTTTATCA+AGG + chr7_2:80254831-80254850 Msa1080680:CDS 30.0%
! AACTAAAGCAATGTCTTTTC+AGG + chr7_2:80254905-80254924 Msa1080680:intron 30.0%
AAACAAATGTGAAGTCCAAT+GGG - chr7_2:80254980-80254999 None:intergenic 30.0%
AGGGTGAACAAGAAAATATT+TGG - chr7_2:80255048-80255067 None:intergenic 30.0%
TAGACGAGAAACAAATGTTA+GGG - chr7_2:80255067-80255086 None:intergenic 30.0%
GGAACTTAATACAGAGATAT+TGG + chr7_2:80255127-80255146 Msa1080680:CDS 30.0%
AATCATGAACTATACATGTG+CGG - chr7_2:80255428-80255447 None:intergenic 30.0%
CACATGTATAGTTCATGATT+AGG + chr7_2:80255428-80255447 Msa1080680:intron 30.0%
TTAAATGGATGGATCAGATT+TGG - chr7_2:80255907-80255926 None:intergenic 30.0%
!! AAATTTTGGGGATAATTAGG+CGG - chr7_2:80256009-80256028 None:intergenic 30.0%
! AGATGGTGTAGAAAATTTTG+GGG - chr7_2:80256021-80256040 None:intergenic 30.0%
! GAGATGGTGTAGAAAATTTT+GGG - chr7_2:80256022-80256041 None:intergenic 30.0%
! AGAGATGGTGTAGAAAATTT+TGG - chr7_2:80256023-80256042 None:intergenic 30.0%
! AATTTTCTACACCATCTCTT+TGG + chr7_2:80256024-80256043 Msa1080680:intron 30.0%
!! AAATTTTGGGGATAATTAGG+CGG - chr7_2:80256009-80256028 None:intergenic 30.0%
! AGATGGTGTAGAAAATTTTG+GGG - chr7_2:80256021-80256040 None:intergenic 30.0%
! GAGATGGTGTAGAAAATTTT+GGG - chr7_2:80256022-80256041 None:intergenic 30.0%
! AGAGATGGTGTAGAAAATTT+TGG - chr7_2:80256023-80256042 None:intergenic 30.0%
! AATTTTCTACACCATCTCTT+TGG + chr7_2:80256024-80256043 Msa1080680:intron 30.0%
AGAAGAATCTGAATTGTTGT+TGG - chr7_2:80256285-80256304 None:intergenic 30.0%
ATGAGATTGGGATCAAATTA+AGG + chr7_2:80256445-80256464 Msa1080680:intron 30.0%
TTGGGATCAAATTAAGGAAT+TGG + chr7_2:80256451-80256470 Msa1080680:intron 30.0%
TTAAGGAATTGGATTTGAGT+AGG + chr7_2:80256462-80256481 Msa1080680:intron 30.0%
TCAATTGGTATTTGATTGTG+TGG + chr7_2:80256605-80256624 Msa1080680:intron 30.0%
TTCATTTCATTGTTAAGGTG+GGG - chr7_2:80256705-80256724 None:intergenic 30.0%
GATCAAAACAAAGAATGGTT+AGG + chr7_2:80256742-80256761 Msa1080680:intron 30.0%
AACAAAGAATGGTTAGGATT+TGG + chr7_2:80256748-80256767 Msa1080680:intron 30.0%
GCAGAGGAAAATTAAAACTA+AGG - chr7_2:80256921-80256940 None:intergenic 30.0%
!!! TTTTAATTTTCCTCTGCAAC+CGG + chr7_2:80256924-80256943 Msa1080680:intron 30.0%
TGGAAGAATAGAATAGTTTG+GGG + chr7_2:80256958-80256977 Msa1080680:intron 30.0%
TGACTTTCCATTATTTAGGA+AGG - chr7_2:80256989-80257008 None:intergenic 30.0%
TGGAAAGTCAAAATATCAGT+TGG + chr7_2:80256999-80257018 Msa1080680:intron 30.0%
! TCTTTTTATGTCCAATCCAA+AGG + chr7_2:80257156-80257175 Msa1080680:intron 30.0%
TGAAATATAGGATGCTTTCA+AGG + chr7_2:80257455-80257474 Msa1080680:intron 30.0%
TGCAAATGTTTCGATGATTT+AGG + chr7_2:80257595-80257614 Msa1080680:intron 30.0%
GCAAATGTTTCGATGATTTA+GGG + chr7_2:80257596-80257615 Msa1080680:intron 30.0%
CAAATGTTTCGATGATTTAG+GGG + chr7_2:80257597-80257616 Msa1080680:intron 30.0%
AGGATTGTTCATTATTGACA+AGG + chr7_2:80257631-80257650 Msa1080680:CDS 30.0%
TTGTTCATTATTGACAAGGA+AGG + chr7_2:80257635-80257654 Msa1080680:CDS 30.0%
TGTTCATTATTGACAAGGAA+GGG + chr7_2:80257636-80257655 Msa1080680:CDS 30.0%
AGTACTCTTTGCTAAGTTTA+GGG - chr7_2:80257959-80257978 None:intergenic 30.0%
AAGTACTCTTTGCTAAGTTT+AGG - chr7_2:80257960-80257979 None:intergenic 30.0%
TTGCGCATCATAACTTAAAA+TGG - chr7_2:80258082-80258101 None:intergenic 30.0%
CATAATTCACTCCAAAATCA+AGG - chr7_2:80258136-80258155 None:intergenic 30.0%
ACAGATAAGAACAGAAGAAA+TGG - chr7_2:80258169-80258188 None:intergenic 30.0%
CTTACTTAAATCACAGAACA+AGG - chr7_2:80258246-80258265 None:intergenic 30.0%
TTCTGTGATTTAAGTAAGCA+AGG + chr7_2:80258248-80258267 Msa1080680:three_prime_UTR 30.0%
AACTTGAAATAGTGTCCGAA+TGG + chr7_2:80253213-80253232 Msa1080680:five_prime_UTR 35.0%
ACTTGAAATAGTGTCCGAAT+GGG + chr7_2:80253214-80253233 Msa1080680:five_prime_UTR 35.0%
ACCCCACCTAAAAAATAAGA+TGG - chr7_2:80253262-80253281 None:intergenic 35.0%
!!! TCTTATTTTTTAGGTGGGGT+TGG + chr7_2:80253262-80253281 Msa1080680:five_prime_UTR 35.0%
AAGATAATTTGGGAGAGAAG+AGG - chr7_2:80253416-80253435 None:intergenic 35.0%
! TGTGGTGGAGAAGATAATTT+GGG - chr7_2:80253426-80253445 None:intergenic 35.0%
! ATGTGGTGGAGAAGATAATT+TGG - chr7_2:80253427-80253446 None:intergenic 35.0%
ACACATAAGCTCAACAAAGA+GGG - chr7_2:80253584-80253603 None:intergenic 35.0%
AACACATAAGCTCAACAAAG+AGG - chr7_2:80253585-80253604 None:intergenic 35.0%
TAGATGCGATAGTCTATGTT+TGG + chr7_2:80253656-80253675 Msa1080680:intron 35.0%
ATGTAGTATAAGGGTCTATC+TGG + chr7_2:80253843-80253862 Msa1080680:intron 35.0%
!!! ACGGGTCATTTTTAGTCAAA+TGG - chr7_2:80253909-80253928 None:intergenic 35.0%
TTGACTAAAAATGACCCGTT+TGG + chr7_2:80253910-80253929 Msa1080680:intron 35.0%
AGAAAGCGATTGTTACCAAA+CGG - chr7_2:80253928-80253947 None:intergenic 35.0%
CCGATTGAATTTGTAGTGTT+TGG - chr7_2:80254166-80254185 None:intergenic 35.0%
! CGCTAACTTTTACCAAATAG+AGG + chr7_2:80254229-80254248 Msa1080680:intron 35.0%
! CCCAACCTAAAATTCTAAGA+TGG - chr7_2:80254364-80254383 None:intergenic 35.0%
GAAGATATAAGGTCTGAACA+TGG - chr7_2:80254444-80254463 None:intergenic 35.0%
GTCTCACATTGGAAGATATA+AGG - chr7_2:80254455-80254474 None:intergenic 35.0%
TATTCACTGCAATGCAACAA+TGG - chr7_2:80254494-80254513 None:intergenic 35.0%
TATTTCATTCATTTGCGTGC+TGG + chr7_2:80254633-80254652 Msa1080680:intron 35.0%
! TATCCTCTTTTTCTACCCAT+TGG + chr7_2:80254962-80254981 Msa1080680:CDS 35.0%
CAAACAAATGTGAAGTCCAA+TGG - chr7_2:80254981-80255000 None:intergenic 35.0%
GTAGACGAGAAACAAATGTT+AGG - chr7_2:80255068-80255087 None:intergenic 35.0%
AGTTCATGATTAGGAGTTCT+AGG + chr7_2:80255437-80255456 Msa1080680:intron 35.0%
GTTCATGATTAGGAGTTCTA+GGG + chr7_2:80255438-80255457 Msa1080680:intron 35.0%
! TTGTGTAGTTTCTAGGTTGA+GGG + chr7_2:80255595-80255614 Msa1080680:intron 35.0%
!! AAATTAGTTTGCTGGTCTAG+TGG - chr7_2:80255723-80255742 None:intergenic 35.0%
TTCCCTAAATTGCTAATGTG+AGG + chr7_2:80255949-80255968 Msa1080680:intron 35.0%
CACCTCACATTAGCAATTTA+GGG - chr7_2:80255954-80255973 None:intergenic 35.0%
TCACCTCACATTAGCAATTT+AGG - chr7_2:80255955-80255974 None:intergenic 35.0%
AATTAGGCGGAGATTAAACA+AGG - chr7_2:80255996-80256015 None:intergenic 35.0%
ATTGAGTAATTCATGGACGT+TGG - chr7_2:80256057-80256076 None:intergenic 35.0%
TTCCCTAAATTGCTAATGTG+AGG + chr7_2:80255949-80255968 Msa1080680:intron 35.0%
CACCTCACATTAGCAATTTA+GGG - chr7_2:80255954-80255973 None:intergenic 35.0%
TCACCTCACATTAGCAATTT+AGG - chr7_2:80255955-80255974 None:intergenic 35.0%
AATTAGGCGGAGATTAAACA+AGG - chr7_2:80255996-80256015 None:intergenic 35.0%
ATTGAGTAATTCATGGACGT+TGG - chr7_2:80256057-80256076 None:intergenic 35.0%
GAATTAACTTCGTGTATCCA+TGG + chr7_2:80256259-80256278 Msa1080680:intron 35.0%
CAATTCAGATTCTTCTTCAC+TGG + chr7_2:80256289-80256308 Msa1080680:intron 35.0%
CAAGAAAGACGATGAAACTA+TGG + chr7_2:80256485-80256504 Msa1080680:intron 35.0%
ATTAAAACTAAGGAGTCCAG+TGG - chr7_2:80256911-80256930 None:intergenic 35.0%
GGAAGTTCCTTCCTAAATAA+TGG + chr7_2:80256979-80256998 Msa1080680:intron 35.0%
ATCAAGAAGAAGCAGACTTT+AGG - chr7_2:80257186-80257205 None:intergenic 35.0%
GTCTGCTTCTTCTTGATTAT+CGG + chr7_2:80257189-80257208 Msa1080680:intron 35.0%
! TTGGTGACATCAGATACTAA+AGG - chr7_2:80257298-80257317 None:intergenic 35.0%
GTGTCAAAATTTACCTGATC+AGG - chr7_2:80257352-80257371 None:intergenic 35.0%
!! AGTAGTGAATAGCTTTGTCT+AGG + chr7_2:80257502-80257521 Msa1080680:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG + chr7_2:80257637-80257656 Msa1080680:CDS 35.0%
GCAAGCTACATATAATTACC+TGG - chr7_2:80257730-80257749 None:intergenic 35.0%
TGCAAGTCCAATGCATATAT+GGG - chr7_2:80257855-80257874 None:intergenic 35.0%
!!! TAGCAAAGAGTACTTTTCTG+CGG + chr7_2:80257965-80257984 Msa1080680:CDS 35.0%
TCATCACACTCACTCAAACA+TGG + chr7_2:80253344-80253363 Msa1080680:exon 40.0%
GAAGATAAGAGAGAAGCAGA+TGG - chr7_2:80253381-80253400 None:intergenic 40.0%
ATGGAGAGAGAAGAAAGATG+TGG - chr7_2:80253444-80253463 None:intergenic 40.0%
TAGTTTAGGGAGAGAATTGG+AGG - chr7_2:80253475-80253494 None:intergenic 40.0%
! AAGCTTTAACGACGAAACTG+CGG - chr7_2:80253542-80253561 None:intergenic 40.0%
CACATAAGCTCAACAAAGAG+GGG - chr7_2:80253583-80253602 None:intergenic 40.0%
GAAAGCGATTGTTACCAAAC+GGG - chr7_2:80253927-80253946 None:intergenic 40.0%
ATGGACACATGCACAACATT+AGG + chr7_2:80254306-80254325 Msa1080680:intron 40.0%
TAGGTAGCCCAATGAATCTT+TGG + chr7_2:80254325-80254344 Msa1080680:intron 40.0%
! ATTTGTTACGCGTCTCACAT+TGG - chr7_2:80254466-80254485 None:intergenic 40.0%
TTCAACGCTTATAAGCCTCA+AGG - chr7_2:80254598-80254617 None:intergenic 40.0%
!! GAGGCTTATAAGCGTTGAAA+TGG + chr7_2:80254599-80254618 Msa1080680:intron 40.0%
AAGAGCGAACTACCATTAGT+TGG + chr7_2:80254775-80254794 Msa1080680:intron 40.0%
AGAGCGAACTACCATTAGTT+GGG + chr7_2:80254776-80254795 Msa1080680:intron 40.0%
AGTCCAATGGGTAGAAAAAG+AGG - chr7_2:80254968-80254987 None:intergenic 40.0%
TAAGTTCCGCAAATTCTGCA+TGG - chr7_2:80255115-80255134 None:intergenic 40.0%
ATGAAATTTGCACCTGACAG+TGG + chr7_2:80255563-80255582 Msa1080680:intron 40.0%
AAGTGCGTTGTGTAGTTTCT+AGG + chr7_2:80255588-80255607 Msa1080680:intron 40.0%
! GTTGTGTAGTTTCTAGGTTG+AGG + chr7_2:80255594-80255613 Msa1080680:intron 40.0%
! ATCTGAATTGTTGTTGGCCA+TGG - chr7_2:80256279-80256298 None:intergenic 40.0%
TTCAGATTCTTCTTCACTGG+TGG + chr7_2:80256292-80256311 Msa1080680:intron 40.0%
AAACATGGGAGCTATGAGAT+TGG + chr7_2:80256432-80256451 Msa1080680:intron 40.0%
AACATGGGAGCTATGAGATT+GGG + chr7_2:80256433-80256452 Msa1080680:intron 40.0%
CATCTGTAGTCAGAAGATCA+AGG - chr7_2:80257063-80257082 None:intergenic 40.0%
TAATGCATGCATGTGCTAGT+AGG - chr7_2:80257103-80257122 None:intergenic 40.0%
GTTCAAACAGACAGAAAGTC+CGG + chr7_2:80257250-80257269 Msa1080680:CDS 40.0%
ATAGACCACAGTTTAGATCG+TGG - chr7_2:80257374-80257393 None:intergenic 40.0%
GACACAGATCCGAAAAAAAG+TGG - chr7_2:80257569-80257588 None:intergenic 40.0%
! ATTTAGGGGATAGCATTGAG+AGG + chr7_2:80257611-80257630 Msa1080680:intron 40.0%
AAATGTGGTCATTCCTGGTA+TGG - chr7_2:80257762-80257781 None:intergenic 40.0%
TGACTAAATGTGGTCATTCC+TGG - chr7_2:80257767-80257786 None:intergenic 40.0%
GTTTGTCCCCATATATGCAT+TGG + chr7_2:80257845-80257864 Msa1080680:intron 40.0%
GCAAGTCCAATGCATATATG+GGG - chr7_2:80257854-80257873 None:intergenic 40.0%
CTGCAAGTCCAATGCATATA+TGG - chr7_2:80257856-80257875 None:intergenic 40.0%
CATATATGCATTGGACTTGC+AGG + chr7_2:80257854-80257873 Msa1080680:intron 40.0%
! AAGTTTAGGGTCTGGTTTCA+TGG - chr7_2:80257946-80257965 None:intergenic 40.0%
! TCTTTGCTAAGTTTAGGGTC+TGG - chr7_2:80257954-80257973 None:intergenic 40.0%
! AACTGCTCATCTGTATCGAT+TGG + chr7_2:80258022-80258041 Msa1080680:three_prime_UTR 40.0%
!! ACTGCTCATCTGTATCGATT+GGG + chr7_2:80258023-80258042 Msa1080680:three_prime_UTR 40.0%
!! GTATCGATTGGGGATGTAAA+AGG + chr7_2:80258034-80258053 Msa1080680:three_prime_UTR 40.0%
! ATCGGTGTACACCTTGATTT+TGG + chr7_2:80258122-80258141 Msa1080680:three_prime_UTR 40.0%
TGAAATAGTGTCCGAATGGG+TGG + chr7_2:80253217-80253236 Msa1080680:five_prime_UTR 45.0%
! TTTGGCTTCTTCTACCTCAC+AGG + chr7_2:80253320-80253339 Msa1080680:five_prime_UTR 45.0%
TGGGAGAGAAGAGGATGTTA+GGG - chr7_2:80253407-80253426 None:intergenic 45.0%
TTGGGAGAGAAGAGGATGTT+AGG - chr7_2:80253408-80253427 None:intergenic 45.0%
GAGAGAGAAGAAAGATGTGG+TGG - chr7_2:80253441-80253460 None:intergenic 45.0%
AGAATTGGAGGAATTGGGGA+TGG - chr7_2:80253463-80253482 None:intergenic 45.0%
GGAGAGAATTGGAGGAATTG+GGG - chr7_2:80253467-80253486 None:intergenic 45.0%
GGGAGAGAATTGGAGGAATT+GGG - chr7_2:80253468-80253487 None:intergenic 45.0%
AGGGAGAGAATTGGAGGAAT+TGG - chr7_2:80253469-80253488 None:intergenic 45.0%
GCGTAGTTTAGGGAGAGAAT+TGG - chr7_2:80253478-80253497 None:intergenic 45.0%
!! CCTTACGAGTCGGTTTTGTA+AGG - chr7_2:80254397-80254416 None:intergenic 45.0%
!! CCTTACAAAACCGACTCGTA+AGG + chr7_2:80254394-80254413 Msa1080680:intron 45.0%
GCAATCTTCACCTTACGAGT+CGG - chr7_2:80254407-80254426 None:intergenic 45.0%
AACGCTTATAAGCCTCAAGG+AGG - chr7_2:80254595-80254614 None:intergenic 45.0%
ACAGCCTCAGCTTCAAAATC+TGG - chr7_2:80254811-80254830 None:intergenic 45.0%
!!! AGCTGAGGCTGTTTTTGATC+AGG + chr7_2:80254819-80254838 Msa1080680:CDS 45.0%
TTCACATTTGTTTGCCCCAC+AGG + chr7_2:80254987-80255006 Msa1080680:CDS 45.0%
CTTCGGTAGCAGATATGCAT+AGG - chr7_2:80255355-80255374 None:intergenic 45.0%
!! GAGTTCTAGGGAAATCTGCA+TGG + chr7_2:80255450-80255469 Msa1080680:intron 45.0%
!! AAAAAACGTGAAGGGTGCCA+CGG - chr7_2:80255515-80255534 None:intergenic 45.0%
TTGGTGTGTCTCCAAAGAGA+TGG - chr7_2:80256038-80256057 None:intergenic 45.0%
TTGGTGTGTCTCCAAAGAGA+TGG - chr7_2:80256038-80256057 None:intergenic 45.0%
! ATTCTTCTTCACTGGTGGTG+TGG + chr7_2:80256297-80256316 Msa1080680:intron 45.0%
ACCGTAAGGATACCAGACAT+AGG + chr7_2:80256637-80256656 Msa1080680:intron 45.0%
CCCTATGTCTGGTATCCTTA+CGG - chr7_2:80256641-80256660 None:intergenic 45.0%
CCGTAAGGATACCAGACATA+GGG + chr7_2:80256638-80256657 Msa1080680:intron 45.0%
TAAGGATACCAGACATAGGG+AGG + chr7_2:80256641-80256660 Msa1080680:intron 45.0%
ATCTTCTTCCTCCCTATGTC+TGG - chr7_2:80256652-80256671 None:intergenic 45.0%
TCAACGAATTCGTTGACACC+TGG + chr7_2:80256773-80256792 Msa1080680:intron 45.0%
AAAACTAAGGAGTCCAGTGG+CGG - chr7_2:80256908-80256927 None:intergenic 45.0%
TTCTTCCATACGGATGTAGC+CGG - chr7_2:80256946-80256965 None:intergenic 45.0%
!! CTTTAGGAGTGCCTTTGGAT+TGG - chr7_2:80257170-80257189 None:intergenic 45.0%
TGTCTGTTTGAACCCATGCA+AGG - chr7_2:80257243-80257262 None:intergenic 45.0%
TGGTGTTCTCATTCCTGATC+AGG + chr7_2:80257336-80257355 Msa1080680:CDS 45.0%
TGACACCACGATCTAAACTG+TGG + chr7_2:80257366-80257385 Msa1080680:intron 45.0%
CAACACTTCTACCAATTCCG+AGG - chr7_2:80257688-80257707 None:intergenic 45.0%
TGAGACAAAGAGAACACTCC+AGG + chr7_2:80257709-80257728 Msa1080680:CDS 45.0%
TCATTCCTGGTATGGTGCAT+TGG - chr7_2:80257754-80257773 None:intergenic 45.0%
! TACTTTTCTGCGGTGTAGTG+TGG + chr7_2:80257975-80257994 Msa1080680:exon 45.0%
!! CTGCTCATCTGTATCGATTG+GGG + chr7_2:80258024-80258043 Msa1080680:three_prime_UTR 45.0%
AATAGTGTCCGAATGGGTGG+AGG + chr7_2:80253220-80253239 Msa1080680:five_prime_UTR 50.0%
ATGCTTCACCTCCACCCATT+CGG - chr7_2:80253231-80253250 None:intergenic 50.0%
! GGAGGGAAGTGCGTAGTTTA+GGG - chr7_2:80253488-80253507 None:intergenic 50.0%
AGAAGAAGAGGAGCGGTTGA+GGG - chr7_2:80253517-80253536 None:intergenic 50.0%
AAGCCTCAAGGAGGAAGAGT+CGG - chr7_2:80254586-80254605 None:intergenic 50.0%
!!! TGCGCCAGATTTTGAAGCTG+AGG + chr7_2:80254804-80254823 Msa1080680:CDS 50.0%
CATTTGTTTGCCCCACAGGT+TGG + chr7_2:80254991-80255010 Msa1080680:intron 50.0%
TAAAGGGTCGACCAACCTGT+GGG - chr7_2:80255005-80255024 None:intergenic 50.0%
TGACCGCCATGCAGAATTTG+CGG + chr7_2:80255106-80255125 Msa1080680:CDS 50.0%
GTTCCGCAAATTCTGCATGG+CGG - chr7_2:80255112-80255131 None:intergenic 50.0%
GGGTGTTTCAGTTGACAGTG+TGG + chr7_2:80255148-80255167 Msa1080680:CDS 50.0%
ATCTGCATGGACTCCTTCAG+TGG + chr7_2:80255463-80255482 Msa1080680:intron 50.0%
CAACGCACTTAACCACTGTC+AGG - chr7_2:80255578-80255597 None:intergenic 50.0%
TCAACGAATCCGTTGACACC+TGG - chr7_2:80255882-80255901 None:intergenic 50.0%
TGTGGAAGAACCTGACCGTA+AGG + chr7_2:80256623-80256642 Msa1080680:intron 50.0%
TGTCTGGTATCCTTACGGTC+AGG - chr7_2:80256636-80256655 None:intergenic 50.0%
! CGTTGACACCTGGTGTCAAA+CGG + chr7_2:80256783-80256802 Msa1080680:intron 50.0%
GTTAGGATCCGTTTGACACC+AGG - chr7_2:80256794-80256813 None:intergenic 50.0%
TTTCAATCAAGCTCCGCCAC+TGG + chr7_2:80256892-80256911 Msa1080680:intron 50.0%
!! GCAGACTTTAGGAGTGCCTT+TGG - chr7_2:80257175-80257194 None:intergenic 50.0%
TGTAGTTCTCGCACCTTGCA+TGG + chr7_2:80257227-80257246 Msa1080680:intron 50.0%
GTAGTTCTCGCACCTTGCAT+GGG + chr7_2:80257228-80257247 Msa1080680:intron 50.0%
CAAACAGACAGAAAGTCCGG+TGG + chr7_2:80257253-80257272 Msa1080680:CDS 50.0%
TTGCACCAATGCACCATACC+AGG + chr7_2:80257746-80257765 Msa1080680:intron 50.0%
GTTCTCCTGCACGTATTGCA+AGG - chr7_2:80257880-80257899 None:intergenic 50.0%
GGTTTCATGGACTTCTCACC+AGG - chr7_2:80257933-80257952 None:intergenic 50.0%
GTGAGTGTGATGAGCCTGTG+AGG - chr7_2:80253337-80253356 None:intergenic 55.0%
AGAAGCAGATGGAGCTGAGC+AGG - chr7_2:80253370-80253389 None:intergenic 55.0%
! GGGAGGGAAGTGCGTAGTTT+AGG - chr7_2:80253489-80253508 None:intergenic 55.0%
AGGAGCGGTTGAGGGAAAGA+GGG - chr7_2:80253509-80253528 None:intergenic 55.0%
GAGAAGAAGAGGAGCGGTTG+AGG - chr7_2:80253518-80253537 None:intergenic 55.0%
GAAACTGCGGCGAGAAGAAG+AGG - chr7_2:80253529-80253548 None:intergenic 55.0%
TTCCCGACTCTTCCTCCTTG+AGG + chr7_2:80254580-80254599 Msa1080680:intron 55.0%
AGCCTCAAGGAGGAAGAGTC+GGG - chr7_2:80254585-80254604 None:intergenic 55.0%
AAAGGGTCGACCAACCTGTG+GGG - chr7_2:80255004-80255023 None:intergenic 55.0%
CTAAAGGGTCGACCAACCTG+TGG - chr7_2:80255006-80255025 None:intergenic 55.0%
TGCATGGACTCCTTCAGTGG+CGG + chr7_2:80255466-80255485 Msa1080680:intron 55.0%
! TTCAGTGGCGGGGCTTCTAT+GGG + chr7_2:80255478-80255497 Msa1080680:intron 55.0%
AGACAGGATCCGTTGACACC+AGG + chr7_2:80255861-80255880 Msa1080680:intron 55.0%
! CCGTTGACACCTGGTGTCAA+CGG - chr7_2:80255873-80255892 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG + chr7_2:80255870-80255889 Msa1080680:intron 55.0%
TGCAACCGGCTACATCCGTA+TGG + chr7_2:80256938-80256957 Msa1080680:intron 55.0%
GACAGAAAGTCCGGTGGTCT+CGG + chr7_2:80257259-80257278 Msa1080680:CDS 55.0%
GTTCAAGTCACCGAGACCAC+CGG - chr7_2:80257272-80257291 None:intergenic 55.0%
CAGCAGGGCAAACTTCATCG+GGG - chr7_2:80257902-80257921 None:intergenic 55.0%
CCAGCAGGGCAAACTTCATC+GGG - chr7_2:80257903-80257922 None:intergenic 55.0%
CCCAGCAGGGCAAACTTCAT+CGG - chr7_2:80257904-80257923 None:intergenic 55.0%
CCGATGAAGTTTGCCCTGCT+GGG + chr7_2:80257901-80257920 Msa1080680:CDS 55.0%
ATGAAGTTTGCCCTGCTGGG+TGG + chr7_2:80257904-80257923 Msa1080680:CDS 55.0%
GCGGTTGAGGGAAAGAGGGA+GGG - chr7_2:80253505-80253524 None:intergenic 60.0%
AGCGGTTGAGGGAAAGAGGG+AGG - chr7_2:80253506-80253525 None:intergenic 60.0%
GAGGAGCGGTTGAGGGAAAG+AGG - chr7_2:80253510-80253529 None:intergenic 60.0%
TGCGGCGAGAAGAAGAGGAG+CGG - chr7_2:80253524-80253543 None:intergenic 60.0%
GGCGCAGCGTTCCCAACTAA+TGG - chr7_2:80254790-80254809 None:intergenic 60.0%
GCATGGACTCCTTCAGTGGC+GGG + chr7_2:80255467-80255486 Msa1080680:intron 60.0%
CATGGACTCCTTCAGTGGCG+GGG + chr7_2:80255468-80255487 Msa1080680:intron 60.0%
CATAGAAGCCCCGCCACTGA+AGG - chr7_2:80255479-80255498 None:intergenic 60.0%
! CTTCAGTGGCGGGGCTTCTA+TGG + chr7_2:80255477-80255496 Msa1080680:intron 60.0%
TATGGGCCGGGTTAATGCCG+TGG + chr7_2:80255495-80255514 Msa1080680:intron 60.0%
! AGGGTGCCACGGCATTAACC+CGG - chr7_2:80255504-80255523 None:intergenic 60.0%
ACGGATGTAGCCGGTTGCAG+AGG - chr7_2:80256937-80256956 None:intergenic 60.0%
GCAGGCCTTGCAATACGTGC+AGG + chr7_2:80257872-80257891 Msa1080680:intron 60.0%
CCCGATGAAGTTTGCCCTGC+TGG + chr7_2:80257900-80257919 Msa1080680:CDS 60.0%
AGGTGGGGTTGGAGCCTCTG+AGG + chr7_2:80253273-80253292 Msa1080680:five_prime_UTR 65.0%
CACCAGGCTTCCACCCAGCA+GGG - chr7_2:80257917-80257936 None:intergenic 65.0%
TCACCAGGCTTCCACCCAGC+AGG - chr7_2:80257918-80257937 None:intergenic 65.0%
! GTGGCGGGGCTTCTATGGGC+CGG + chr7_2:80255482-80255501 Msa1080680:intron 70.0%
TGGCGGGGCTTCTATGGGCC+GGG + chr7_2:80255483-80255502 Msa1080680:intron 70.0%
TGCCCTGCTGGGTGGAAGCC+TGG + chr7_2:80257912-80257931 Msa1080680:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80253179 80258286 80253179 ID=Msa1080680;Name=Msa1080680
chr7_2 mRNA 80253179 80258286 80253179 ID=Msa1080680-mRNA-1;Parent=Msa1080680;Name=Msa1080680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=184|1|1|1|1|1|7|294|264
chr7_2 exon 80253179 80253563 80253179 ID=Msa1080680-mRNA-1:exon:20269;Parent=Msa1080680-mRNA-1
chr7_2 exon 80254778 80254852 80254778 ID=Msa1080680-mRNA-1:exon:20270;Parent=Msa1080680-mRNA-1
chr7_2 exon 80254927 80255008 80254927 ID=Msa1080680-mRNA-1:exon:20271;Parent=Msa1080680-mRNA-1
chr7_2 exon 80255090 80255169 80255090 ID=Msa1080680-mRNA-1:exon:20272;Parent=Msa1080680-mRNA-1
chr7_2 exon 80257232 80257357 80257232 ID=Msa1080680-mRNA-1:exon:20273;Parent=Msa1080680-mRNA-1
chr7_2 exon 80257617 80257730 80257617 ID=Msa1080680-mRNA-1:exon:20274;Parent=Msa1080680-mRNA-1
chr7_2 exon 80257876 80258286 80257876 ID=Msa1080680-mRNA-1:exon:20275;Parent=Msa1080680-mRNA-1
chr7_2 five_prime_UTR 80253179 80253362 80253179 ID=Msa1080680-mRNA-1:five_prime_utr;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80253363 80253563 80253363 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80254778 80254852 80254778 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80254927 80255008 80254927 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80255090 80255169 80255090 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80257232 80257357 80257232 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80257617 80257730 80257617 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 CDS 80257876 80257992 80257876 ID=Msa1080680-mRNA-1:cds;Parent=Msa1080680-mRNA-1
chr7_2 three_prime_UTR 80257993 80258286 80257993 ID=Msa1080680-mRNA-1:three_prime_utr;Parent=Msa1080680-mRNA-1
Gene Sequence

>Msa1080680

ATGGCCTGCTCAGCTCCATCTGCTTCTCTCTTATCTTCAAACCCTAACATCCTCTTCTCTCCCAAATTATCTTCTCCACCACATCTTTCTTCTCTCTCCATCCCCAATTCCTCCAATTCTCTCCCTAAACTACGCACTTCCCTCCCTCTTTCCCTCAACCGCTCCTCTTCTTCTCGCCGCAGTTTCGTCGTTAAAGCTTCTAGCGAACTACCATTAGTTGGGAACGCTGCGCCAGATTTTGAAGCTGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTTAAACTATCTGAATATATTGGGAAGAAATATGTTATCCTCTTTTTCTACCCATTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGCCATGCAGAATTTGCGGAACTTAATACAGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGGTTCAAACAGACAGAAAGTCCGGTGGTCTCGGTGACTTGAACTATCCTTTAGTATCTGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGGGATAGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATCCAACATTCTACCATCAACAACCTCGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTCCAGGCCTTGCAATACGTGCAGGAGAACCCCGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAACCAGACCCTAAACTTAGCAAAGAGTACTTTTCTGCGGTGTAG

Protein sequence

>Msa1080680

MACSAPSASLLSSNPNILFSPKLSSPPHLSSLSIPNSSNSLPKLRTSLPLSLNRSSSSRRSFVVKASSELPLVGNAAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFAELNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV*