Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586790 | XP_003604299.2 | 88.000 | 450 | 21 | 5 | 1 | 444 | 1 | 423 | 0.0 | 730 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586790 | sp|B7IFB5|RS15_THEAB | 54.667 | 75 | 32 | 1 | 353 | 425 | 9 | 83 | 3.55e-18 | 82.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0209140 | Msa0586790 | 0.802649 | 5.074845e-49 | -8.615850e-47 |
Msa0403500 | Msa0586790 | 0.816025 | 6.841343e-52 | -8.615850e-47 |
Msa0437020 | Msa0586790 | 0.821210 | 4.557371e-53 | -8.615850e-47 |
Msa0241830 | Msa0586790 | 0.800943 | 1.136943e-48 | -8.615850e-47 |
Msa0519150 | Msa0586790 | 0.800379 | 1.481925e-48 | -8.615850e-47 |
Msa0581280 | Msa0586790 | 0.806720 | 7.170709e-50 | -8.615850e-47 |
Msa0586790 | Msa0626630 | 0.808938 | 2.421823e-50 | -8.615850e-47 |
Msa0586790 | Msa0645620 | 0.809484 | 1.849205e-50 | -8.615850e-47 |
Msa0586790 | Msa0664750 | 0.827486 | 1.523613e-54 | -8.615850e-47 |
Msa0586790 | Msa1044480 | 0.808483 | 3.029048e-50 | -8.615850e-47 |
Msa0586790 | Msa1123770 | 0.814712 | 1.339518e-51 | -8.615850e-47 |
Msa0586790 | Msa1169910 | 0.811724 | 6.067832e-51 | -8.615850e-47 |
Msa0586790 | Msa1275680 | 0.800473 | 1.417702e-48 | -8.615850e-47 |
Msa0586790 | Msa1385720 | 0.815814 | 7.621237e-52 | -8.615850e-47 |
Msa0586790 | Msa1434090 | 0.818564 | 1.835472e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586790 | MtrunA17_Chr4g0002731 | 88.000 | 450 | 21 | 5 | 1 | 444 | 1 | 423 | 0.0 | 730 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586790 | AT1G15810.1 | 55.365 | 233 | 69 | 4 | 199 | 430 | 219 | 417 | 8.52e-76 | 243 |
Msa0586790 | AT1G80620.1 | 39.073 | 453 | 187 | 14 | 16 | 432 | 15 | 414 | 8.90e-76 | 243 |
Find 135 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGATTTAGGTTTAATTTA+TGG | 0.101635 | 4_2:-8155859 | Msa0586790:three_prime_UTR |
AATATTTCTTGTATCATAAT+TGG | 0.161540 | 4_2:-8155774 | Msa0586790:three_prime_UTR |
GAAGAAGCCAATCTCGTTTC+AGG | 0.197152 | 4_2:-8160424 | Msa0586790:CDS |
TCAGCAGAGGACATGTTATC+TGG | 0.221149 | 4_2:+8158481 | None:intergenic |
TATGTTGGGGTTTATTTAAT+TGG | 0.228847 | 4_2:+8156091 | None:intergenic |
TTTGCTCAAGATATCATCTT+TGG | 0.250670 | 4_2:+8160503 | None:intergenic |
GGAATCAGGTGCGGTGGTTT+TGG | 0.276997 | 4_2:+8160464 | None:intergenic |
CGGGCTTTATAAGTATATTC+TGG | 0.291890 | 4_2:+8156137 | None:intergenic |
TTAGCCAAGGTGAATGATTC+AGG | 0.297727 | 4_2:-8160165 | Msa0586790:CDS |
GTGAATGATTCAGGGAGTTT+TGG | 0.301942 | 4_2:-8160156 | Msa0586790:CDS |
CGTATCCGAAGCGGAATCTT+TGG | 0.307010 | 4_2:+8160374 | None:intergenic |
TTGCTATTTGTTGATTGCTT+TGG | 0.309603 | 4_2:-8158674 | Msa0586790:CDS |
TTATATATGCATGGTGAATT+AGG | 0.318193 | 4_2:-8160123 | Msa0586790:CDS |
TACTAACATGAAGCTTTATT+AGG | 0.327657 | 4_2:+8159901 | None:intergenic |
CTATTCCCCGCTGACATATT+TGG | 0.329042 | 4_2:+8160240 | None:intergenic |
TTGTTACCGGATTCGATGTT+TGG | 0.341309 | 4_2:-8160207 | Msa0586790:CDS |
AGTGGTGGAGAGTAGGGTTT+GGG | 0.342066 | 4_2:+8160684 | None:intergenic |
ATTCTTCAGCCATGGATATA+TGG | 0.342367 | 4_2:+8155954 | None:intergenic |
CGATGTTTGGGAAGGAGATA+AGG | 0.345042 | 4_2:-8160194 | Msa0586790:CDS |
ACACTTGTAGAAGCAAAATA+TGG | 0.357125 | 4_2:+8155981 | None:intergenic |
AGCTTGGAGTTCCACCAATC+AGG | 0.379248 | 4_2:+8159044 | None:intergenic |
TCTTGTATCATAATTGGAAA+TGG | 0.387100 | 4_2:-8155768 | Msa0586790:three_prime_UTR |
TAAAGCCCGGACTGGTAAAT+CGG | 0.389131 | 4_2:-8156123 | Msa0586790:CDS |
TCTGACTTGTTGTAAGGATT+CGG | 0.391613 | 4_2:+8160596 | None:intergenic |
AATATGTCAGCGGGGAATAG+TGG | 0.398052 | 4_2:-8160237 | Msa0586790:CDS |
TGATGGAGTGGTGGAGAGTA+GGG | 0.398977 | 4_2:+8160678 | None:intergenic |
TAGTGGGACGAGTTTGTTAC+CGG | 0.405301 | 4_2:-8160220 | Msa0586790:CDS |
GCTTAGGAAATAATTCTGTT+TGG | 0.411342 | 4_2:-8155736 | None:intergenic |
GAGTGGTGGAGAGTAGGGTT+TGG | 0.415098 | 4_2:+8160683 | None:intergenic |
GTGATGGAGTGGTGGAGAGT+AGG | 0.417770 | 4_2:+8160677 | None:intergenic |
TGCTTTAGGATGTGCATTCT+CGG | 0.419325 | 4_2:-8156271 | Msa0586790:intron |
TGTGGCTCTGCTCGTGTTCA+AGG | 0.419529 | 4_2:-8158400 | Msa0586790:intron |
TAAAGAGCATCTTGTTGAAA+AGG | 0.423407 | 4_2:-8159005 | Msa0586790:CDS |
CTTAGAGAGAACAAAACAAT+AGG | 0.423531 | 4_2:+8156178 | None:intergenic |
CCATAAATTAAACCTAAATC+AGG | 0.428382 | 4_2:+8155859 | None:intergenic |
CTACAAAATAAACAATTGAT+TGG | 0.428999 | 4_2:+8155822 | None:intergenic |
CTCAAGTGAAAGGAAAAGAT+TGG | 0.434328 | 4_2:-8160077 | Msa0586790:CDS |
GTTAATAGATCATCGGAATC+AGG | 0.434445 | 4_2:+8160450 | None:intergenic |
TGGAGGTGGAGAAGAGGTGA+TGG | 0.434925 | 4_2:+8160661 | None:intergenic |
AAAACTACCATCGGTGGTGG+TGG | 0.439256 | 4_2:-8160348 | Msa0586790:CDS |
GTTGAAGAAAGTGAGGGAAA+TGG | 0.440483 | 4_2:-8160028 | Msa0586790:CDS |
TGTTACCGGATTCGATGTTT+GGG | 0.445980 | 4_2:-8160206 | Msa0586790:CDS |
GGTCTCCACCTCGGCGTCAC+CGG | 0.450181 | 4_2:+8160261 | None:intergenic |
ATTGACTAAGCTGCTTGAAC+TGG | 0.450433 | 4_2:+8156010 | None:intergenic |
TGATGATAGATGCTTAATCT+TGG | 0.455799 | 4_2:+8158183 | None:intergenic |
GATGTTTGGGAAGGAGATAA+GGG | 0.455958 | 4_2:-8160193 | Msa0586790:CDS |
CTCTTCTCCACCTCCAACTC+CGG | 0.457603 | 4_2:-8160654 | Msa0586790:CDS |
GAAATGGATAAATGAAGCTT+AGG | 0.459164 | 4_2:-8155752 | Msa0586790:three_prime_UTR |
ACCGTCATTGTCACCGGAGT+TGG | 0.459507 | 4_2:+8160641 | None:intergenic |
GTTGAACACTTTATTTGTAT+CGG | 0.460097 | 4_2:+8159972 | None:intergenic |
AACTACCATCGGTGGTGGTG+GGG | 0.461512 | 4_2:-8160346 | Msa0586790:CDS |
AGCGCCATTGTTGGTGGTGG+TGG | 0.462114 | 4_2:+8160732 | None:intergenic |
GGAGGCTTTGACAAGTAGCT+TGG | 0.462551 | 4_2:+8159028 | None:intergenic |
ATTGATATGTTGTCCCTGAT+TGG | 0.468754 | 4_2:-8159058 | Msa0586790:CDS |
TACATATCCTGAAACGAGAT+TGG | 0.469151 | 4_2:+8160417 | None:intergenic |
ACTACCATCGGTGGTGGTGG+GGG | 0.471057 | 4_2:-8160345 | Msa0586790:CDS |
TGAGCTTCTGACTTGTTGTA+AGG | 0.477275 | 4_2:+8160590 | None:intergenic |
CGGAGAAGAAGCGCCATTGT+TGG | 0.491513 | 4_2:+8160723 | None:intergenic |
AAACTACCATCGGTGGTGGT+GGG | 0.493683 | 4_2:-8160347 | Msa0586790:CDS |
TGCGAGGGAGAGAGAGGAGA+AGG | 0.494280 | 4_2:+8160537 | None:intergenic |
TCCTTCCCAAACATCGAATC+CGG | 0.494755 | 4_2:+8160201 | None:intergenic |
GTCGCCACCGTCATTGTCAC+CGG | 0.497517 | 4_2:+8160635 | None:intergenic |
AGTTCAAGCAGCTTAGTCAA+TGG | 0.497786 | 4_2:-8156008 | Msa0586790:three_prime_UTR |
GTGAGAGGTTGAAGAAAGTG+AGG | 0.507809 | 4_2:-8160035 | Msa0586790:CDS |
GTCATTGTCACCGGAGTTGG+AGG | 0.510211 | 4_2:+8160644 | None:intergenic |
TGGAGACCAAATATGTCAGC+GGG | 0.513868 | 4_2:-8160246 | Msa0586790:CDS |
CAGCAGAGGACATGTTATCT+GGG | 0.517850 | 4_2:+8158482 | None:intergenic |
ATTGTCACCGGAGTTGGAGG+TGG | 0.527310 | 4_2:+8160647 | None:intergenic |
GGTGGTGGAGAAAGAGAAAG+AGG | 0.528464 | 4_2:+8160747 | None:intergenic |
AAAGCCCGGACTGGTAAATC+GGG | 0.529645 | 4_2:-8156122 | Msa0586790:CDS |
GTGGAGAAGAGGTGATGGAG+TGG | 0.532903 | 4_2:+8160666 | None:intergenic |
TCAACAAGATGCTCTTTAGG+AGG | 0.535728 | 4_2:+8159010 | None:intergenic |
GGCTAGTCAGACACTTAGAC+TGG | 0.536045 | 4_2:+8156031 | None:intergenic |
GAGAAGAGGTGATGGAGTGG+TGG | 0.540124 | 4_2:+8160669 | None:intergenic |
AGAAGAAGCGCCATTGTTGG+TGG | 0.541690 | 4_2:+8160726 | None:intergenic |
CTTCTGAGTTAATAGATCAT+CGG | 0.542609 | 4_2:+8160443 | None:intergenic |
TAGGATGTGCATTCTCGGAA+AGG | 0.545917 | 4_2:-8156266 | Msa0586790:CDS |
GCTTGGAGTTCCACCAATCA+GGG | 0.546915 | 4_2:+8159045 | None:intergenic |
TTCTCCACCACCACCAACAA+TGG | 0.548692 | 4_2:-8160736 | Msa0586790:exon |
TGTAAGGATTCGGAGAAGGA+GGG | 0.550289 | 4_2:+8160606 | None:intergenic |
ATCATCAGTTCTACACAAGA+AGG | 0.554571 | 4_2:-8158167 | Msa0586790:intron |
CTTCAACCTCTCACTCAACT+CGG | 0.554778 | 4_2:+8160044 | None:intergenic |
GTCACCCGATTTACCAGTCC+GGG | 0.556020 | 4_2:+8156118 | None:intergenic |
CGATTGCCGAGTTGAGTGAG+AGG | 0.557053 | 4_2:-8160050 | Msa0586790:CDS |
TTGTAAGGATTCGGAGAAGG+AGG | 0.557469 | 4_2:+8160605 | None:intergenic |
CGGAGTTGGAGGTGGAGAAG+AGG | 0.562478 | 4_2:+8160655 | None:intergenic |
ATATGTCAGCGGGGAATAGT+GGG | 0.562574 | 4_2:-8160236 | Msa0586790:CDS |
AGCAACACATTCTTCAGCCA+TGG | 0.562640 | 4_2:+8155946 | None:intergenic |
ACCGGATTCGATGTTTGGGA+AGG | 0.563280 | 4_2:-8160202 | Msa0586790:CDS |
TGATAGCAATGGTTCAAAAG+AGG | 0.564231 | 4_2:-8156241 | Msa0586790:CDS |
TTGTTGTAAGGATTCGGAGA+AGG | 0.565751 | 4_2:+8160602 | None:intergenic |
TAGCCAAGGTGAATGATTCA+GGG | 0.570378 | 4_2:-8160164 | Msa0586790:CDS |
CGTCACCCGATTTACCAGTC+CGG | 0.571673 | 4_2:+8156117 | None:intergenic |
GAAGGTGTTGTGTTTGACGT+TGG | 0.572394 | 4_2:+8160555 | None:intergenic |
TCGATCCAAAGATTCCGCTT+CGG | 0.574006 | 4_2:-8160379 | Msa0586790:CDS |
ATTGGACTTGATGTGATTCG+TGG | 0.579464 | 4_2:-8160321 | Msa0586790:CDS |
AAGATGTCCGAGTCAGATTG+TGG | 0.579927 | 4_2:-8158418 | Msa0586790:CDS |
CAGAATATACTTATAAAGCC+CGG | 0.580244 | 4_2:-8156136 | Msa0586790:CDS |
TGGTGGAGAAAGAGAAAGAG+GGG | 0.580844 | 4_2:+8160749 | None:intergenic |
TGAGAGGTTGAAGAAAGTGA+GGG | 0.583053 | 4_2:-8160034 | Msa0586790:CDS |
GTGGTGGAGAAAGAGAAAGA+GGG | 0.584438 | 4_2:+8160748 | None:intergenic |
ACTTGATGAATTTCATCATG+AGG | 0.585281 | 4_2:+8158710 | None:intergenic |
TATACTTATAAAGCCCGGAC+TGG | 0.588412 | 4_2:-8156131 | Msa0586790:CDS |
TTGGGAAGGAGATAAGGGAT+AGG | 0.591410 | 4_2:-8160188 | Msa0586790:CDS |
AAATTGAGACCTCAAGTGAA+AGG | 0.593143 | 4_2:-8160087 | Msa0586790:CDS |
ATTGAAAATTGAGCTGACAA+AGG | 0.594958 | 4_2:-8158455 | Msa0586790:CDS |
AATCCCAGTCGGTTCTTCTG+AGG | 0.595536 | 4_2:+8156201 | None:intergenic |
TCGAAAACTACCATCGGTGG+TGG | 0.596020 | 4_2:-8160351 | Msa0586790:CDS |
AATACCTCAGAAGAACCGAC+TGG | 0.596907 | 4_2:-8156205 | Msa0586790:CDS |
AATCAACAAATAGCAAGAGA+TGG | 0.599289 | 4_2:+8158681 | None:intergenic |
AGTGTTGTTCCATATATCCA+TGG | 0.599971 | 4_2:-8155963 | Msa0586790:three_prime_UTR |
GATAAGGGATAGGTTAGCCA+AGG | 0.602083 | 4_2:-8160178 | Msa0586790:CDS |
AGAAGCGCCATTGTTGGTGG+TGG | 0.602122 | 4_2:+8160729 | None:intergenic |
TAGACTGGATAAAATCAGCT+AGG | 0.602525 | 4_2:+8156046 | None:intergenic |
GACATATTTGGTCTCCACCT+CGG | 0.603815 | 4_2:+8160252 | None:intergenic |
TCCAACTCCGGTGACAATGA+CGG | 0.604175 | 4_2:-8160642 | Msa0586790:CDS |
GATATGTTGTCCCTGATTGG+TGG | 0.604709 | 4_2:-8159055 | Msa0586790:CDS |
AGACGCCGGTGACGCCGAGG+TGG | 0.621545 | 4_2:-8160266 | Msa0586790:CDS |
AGCAGAGCCACAATCTGACT+CGG | 0.621918 | 4_2:+8158411 | None:intergenic |
ATCATCGGAATCAGGTGCGG+TGG | 0.623646 | 4_2:+8160458 | None:intergenic |
ACTCCCTGAATCATTCACCT+TGG | 0.637166 | 4_2:+8160161 | None:intergenic |
ACTGTTAGGTTATATATGCA+TGG | 0.640796 | 4_2:-8160132 | Msa0586790:CDS |
TCGGAAAGGTCTGATAGCAA+TGG | 0.642289 | 4_2:-8156252 | Msa0586790:CDS |
ATCAGACGCCGGTGACGCCG+AGG | 0.642782 | 4_2:-8160269 | Msa0586790:CDS |
GATACGTCGAAAACTACCAT+CGG | 0.667277 | 4_2:-8160357 | Msa0586790:CDS |
TGATACAAGAAATATTACGA+TGG | 0.667765 | 4_2:+8155781 | None:intergenic |
ATACCTCAGAAGAACCGACT+GGG | 0.671133 | 4_2:-8156204 | Msa0586790:CDS |
GTGGAGACCAAATATGTCAG+CGG | 0.677529 | 4_2:-8160247 | Msa0586790:CDS |
TAGATCATCGGAATCAGGTG+CGG | 0.679666 | 4_2:+8160455 | None:intergenic |
AAATTCGACGAATCAGACGC+CGG | 0.695623 | 4_2:-8160280 | Msa0586790:CDS |
ACGTCGAAAACTACCATCGG+TGG | 0.701049 | 4_2:-8160354 | Msa0586790:CDS |
AAAACAATAGGAATCCCAGT+CGG | 0.725069 | 4_2:+8156190 | None:intergenic |
AACTCCGGTGACAATGACGG+TGG | 0.731984 | 4_2:-8160639 | Msa0586790:CDS |
TTACGATGGAAAAGACAACA+AGG | 0.736796 | 4_2:+8155795 | None:intergenic |
GGAGACCAAATATGTCAGCG+GGG | 0.770843 | 4_2:-8160245 | Msa0586790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATAAATCTATTGTAGA+TGG | - | chr4_2:8157330-8157349 | Msa0586790:intron | 15.0% |
!! | TATATGAAAAATATAAGTGA+TGG | - | chr4_2:8157425-8157444 | Msa0586790:intron | 15.0% |
!! | AATATATTAATGTTTGACTA+TGG | + | chr4_2:8157758-8157777 | None:intergenic | 15.0% |
!!! | TTCTTTTAAATCTAGTATAA+CGG | - | chr4_2:8158556-8158575 | Msa0586790:intron | 15.0% |
!!! | TTTTTGAATTTTAAGTTTGT+TGG | + | chr4_2:8159505-8159524 | None:intergenic | 15.0% |
!!! | TCTATTTTTAATCATGTAAT+TGG | + | chr4_2:8159731-8159750 | None:intergenic | 15.0% |
!!! | TTTTTTCAATAGTTTATGTT+GGG | + | chr4_2:8160453-8160472 | None:intergenic | 15.0% |
!!! | TTTTTTTCAATAGTTTATGT+TGG | + | chr4_2:8160454-8160473 | None:intergenic | 15.0% |
!! | AATATTTCTTGTATCATAAT+TGG | - | chr4_2:8160753-8160772 | Msa0586790:five_prime_UTR | 15.0% |
!!! | TTATTTTGCAATACATGTTT+AGG | - | chr4_2:8156845-8156864 | Msa0586790:intron | 20.0% |
!! | TTTATCATTGATACTAGATA+AGG | - | chr4_2:8156923-8156942 | Msa0586790:intron | 20.0% |
!! | ATGACCAAAATATATTTGTT+TGG | + | chr4_2:8157104-8157123 | None:intergenic | 20.0% |
!!! | AACAAATATATTTTGGTCAT+AGG | - | chr4_2:8157104-8157123 | Msa0586790:intron | 20.0% |
!!! | ACAAATATATTTTGGTCATA+GGG | - | chr4_2:8157105-8157124 | Msa0586790:intron | 20.0% |
!! | TAATAGCTTAAAAAAAAGTG+GGG | + | chr4_2:8157794-8157813 | None:intergenic | 20.0% |
!! | GTAATAGCTTAAAAAAAAGT+GGG | + | chr4_2:8157795-8157814 | None:intergenic | 20.0% |
!! | TGTAATAGCTTAAAAAAAAG+TGG | + | chr4_2:8157796-8157815 | None:intergenic | 20.0% |
!! | AGTTAATTCAAAATATCAAG+CGG | + | chr4_2:8157905-8157924 | None:intergenic | 20.0% |
!! | TGTTCGATATTAAATTTAGA+CGG | - | chr4_2:8158186-8158205 | Msa0586790:CDS | 20.0% |
!! | TAAAGTATAGCAAACATATT+TGG | + | chr4_2:8158214-8158233 | None:intergenic | 20.0% |
!!! | TACTAATTTTCTTTCATGAT+TGG | - | chr4_2:8158232-8158251 | Msa0586790:intron | 20.0% |
!!! | AGTGTTTGGAATATATTAAT+AGG | - | chr4_2:8158259-8158278 | Msa0586790:intron | 20.0% |
!! | AAAAAAATTAGTACTAGAGT+TGG | + | chr4_2:8158685-8158704 | None:intergenic | 20.0% |
!! | GAATATTTATAAAGTTGTAC+AGG | + | chr4_2:8158872-8158891 | None:intergenic | 20.0% |
!! | ACTTTATAAATATTCTGCAA+AGG | - | chr4_2:8158877-8158896 | Msa0586790:intron | 20.0% |
!! | CTGGTAAAGATTAAAAATAA+GGG | + | chr4_2:8159070-8159089 | None:intergenic | 20.0% |
!! | ACTGGTAAAGATTAAAAATA+AGG | + | chr4_2:8159071-8159090 | None:intergenic | 20.0% |
!!! | GAAAATTGTTTTAGTTAACA+TGG | + | chr4_2:8159280-8159299 | None:intergenic | 20.0% |
!!! | TGTTAACTAAAACAATTTTC+AGG | - | chr4_2:8159280-8159299 | Msa0586790:intron | 20.0% |
!! | TCATAAAAATCATAGCTTAA+AGG | - | chr4_2:8159386-8159405 | Msa0586790:intron | 20.0% |
!!! | ACAATATTCTTTTACTAAGA+TGG | + | chr4_2:8159557-8159576 | None:intergenic | 20.0% |
!! | TCTTAGTAAAAGAATATTGT+TGG | - | chr4_2:8159557-8159576 | Msa0586790:intron | 20.0% |
!! | TTATGAGAAATGAAATACTA+GGG | + | chr4_2:8159814-8159833 | None:intergenic | 20.0% |
!! | TGAACATAAGAATTTAATCA+GGG | + | chr4_2:8159947-8159966 | None:intergenic | 20.0% |
!! | ATGAACATAAGAATTTAATC+AGG | + | chr4_2:8159948-8159967 | None:intergenic | 20.0% |
!! | CCAATTCAAAATTATATTGA+AGG | + | chr4_2:8160012-8160031 | None:intergenic | 20.0% |
!!! | CCTTCAATATAATTTTGAAT+TGG | - | chr4_2:8160009-8160028 | Msa0586790:CDS | 20.0% |
!!! | TTTTTCAATAGTTTATGTTG+GGG | + | chr4_2:8160452-8160471 | None:intergenic | 20.0% |
!! | TCAGGCAAAAATAATATAAT+GGG | + | chr4_2:8160653-8160672 | None:intergenic | 20.0% |
!! | ATCAGGCAAAAATAATATAA+TGG | + | chr4_2:8160654-8160673 | None:intergenic | 20.0% |
!!! | ATATTATTTTTGCCTGATTT+AGG | - | chr4_2:8160656-8160675 | Msa0586790:CDS | 20.0% |
!! | CTACAAAATAAACAATTGAT+TGG | + | chr4_2:8160708-8160727 | None:intergenic | 20.0% |
!!! | CAATCAATTGTTTATTTTGT+AGG | - | chr4_2:8160706-8160725 | Msa0586790:CDS | 20.0% |
! | TTATATATGCATGGTGAATT+AGG | - | chr4_2:8156404-8156423 | Msa0586790:intron | 25.0% |
!! | GTTGAACACTTTATTTGTAT+CGG | + | chr4_2:8156558-8156577 | None:intergenic | 25.0% |
!!! | TACTAACATGAAGCTTTATT+AGG | + | chr4_2:8156629-8156648 | None:intergenic | 25.0% |
! | ATCATCGTATCATAACTAAA+AGG | + | chr4_2:8156706-8156725 | None:intergenic | 25.0% |
! | CTATGTTTGGTAAAAAATAG+TGG | - | chr4_2:8156868-8156887 | Msa0586790:intron | 25.0% |
!!! | CTCATAGTTGATAAATTAGT+GGG | - | chr4_2:8156968-8156987 | Msa0586790:intron | 25.0% |
!!! | ACAAGTTTAAGCTTTTTTAC+TGG | + | chr4_2:8157067-8157086 | None:intergenic | 25.0% |
!! | TGTGCCAAACAAATATATTT+TGG | - | chr4_2:8157097-8157116 | Msa0586790:intron | 25.0% |
!!! | CAAATATATTTTGGTCATAG+GGG | - | chr4_2:8157106-8157125 | Msa0586790:intron | 25.0% |
! | ATTGACAACACTTTATACTA+AGG | + | chr4_2:8157181-8157200 | None:intergenic | 25.0% |
!!! | AGTATAAAGTGTTGTCAATT+AGG | - | chr4_2:8157182-8157201 | Msa0586790:intron | 25.0% |
!!! | GTATAAAGTGTTGTCAATTA+GGG | - | chr4_2:8157183-8157202 | Msa0586790:intron | 25.0% |
!!! | TATAAAGTGTTGTCAATTAG+GGG | - | chr4_2:8157184-8157203 | Msa0586790:intron | 25.0% |
! | AATATAGAGTTATAAACCAC+AGG | + | chr4_2:8157668-8157687 | None:intergenic | 25.0% |
!! | AGCATTTTAGATTAATCGAA+TGG | + | chr4_2:8157713-8157732 | None:intergenic | 25.0% |
!!! | GATATTTTGAATTAACTTCG+TGG | - | chr4_2:8157908-8157927 | Msa0586790:intron | 25.0% |
!!! | GGCACATTTTGTTTTTTTAA+TGG | - | chr4_2:8157966-8157985 | Msa0586790:intron | 25.0% |
!!! | AATTTTCAATTTTTCAGCAG+AGG | + | chr4_2:8158062-8158081 | None:intergenic | 25.0% |
! | GTTCGATATTAAATTTAGAC+GGG | - | chr4_2:8158187-8158206 | Msa0586790:CDS | 25.0% |
! | AACATACAAATCTTCTATTG+AGG | + | chr4_2:8158454-8158473 | None:intergenic | 25.0% |
! | AACAATGTTTGTACATCAAA+TGG | + | chr4_2:8158480-8158499 | None:intergenic | 25.0% |
!! | ATTTTACAGACTATGAAAAC+TGG | + | chr4_2:8158595-8158614 | None:intergenic | 25.0% |
! | TTTAATCTTTACCAGTTAAC+TGG | - | chr4_2:8159075-8159094 | Msa0586790:intron | 25.0% |
! | TTGCTACATAAACAATATGT+TGG | + | chr4_2:8159247-8159266 | None:intergenic | 25.0% |
! | TATCTCAGACAAATTAAGAT+GGG | - | chr4_2:8159311-8159330 | Msa0586790:intron | 25.0% |
! | ATTGGGTATTATTATGAAGA+TGG | - | chr4_2:8159335-8159354 | Msa0586790:intron | 25.0% |
! | TTGGGTATTATTATGAAGAT+GGG | - | chr4_2:8159336-8159355 | Msa0586790:intron | 25.0% |
! | TTATTGTTACTCATGTCTAT+GGG | + | chr4_2:8159444-8159463 | None:intergenic | 25.0% |
!! | AAAGAATATTGTTGGTAGAT+TGG | - | chr4_2:8159565-8159584 | Msa0586790:intron | 25.0% |
! | AATATCATTCACATCGAAAT+AGG | - | chr4_2:8159702-8159721 | Msa0586790:intron | 25.0% |
! | TGATTAAAAATAGACTGACA+TGG | - | chr4_2:8159737-8159756 | Msa0586790:intron | 25.0% |
! | CTTATGAGAAATGAAATACT+AGG | + | chr4_2:8159815-8159834 | None:intergenic | 25.0% |
! | AAAATTACAACTTCCAACAT+AGG | + | chr4_2:8159857-8159876 | None:intergenic | 25.0% |
!! | AGTTCATCATTAGTTTAACA+TGG | - | chr4_2:8159889-8159908 | Msa0586790:intron | 25.0% |
!! | GTTCATCATTAGTTTAACAT+GGG | - | chr4_2:8159890-8159909 | Msa0586790:intron | 25.0% |
!! | TTCATCATTAGTTTAACATG+GGG | - | chr4_2:8159891-8159910 | Msa0586790:intron | 25.0% |
! | TATGTTGGGGTTTATTTAAT+TGG | + | chr4_2:8160439-8160458 | None:intergenic | 25.0% |
! | TTCGTACAGAAAAAAGAAAA+TGG | + | chr4_2:8160607-8160626 | None:intergenic | 25.0% |
! | CCATAAATTAAACCTAAATC+AGG | + | chr4_2:8160671-8160690 | None:intergenic | 25.0% |
!! | CCTGATTTAGGTTTAATTTA+TGG | - | chr4_2:8160668-8160687 | Msa0586790:CDS | 25.0% |
! | TGATACAAGAAATATTACGA+TGG | + | chr4_2:8160749-8160768 | None:intergenic | 25.0% |
! | TCTTGTATCATAATTGGAAA+TGG | - | chr4_2:8160759-8160778 | Msa0586790:five_prime_UTR | 25.0% |
TTTGCTCAAGATATCATCTT+TGG | + | chr4_2:8156027-8156046 | None:intergenic | 30.0% | |
CTTCTGAGTTAATAGATCAT+CGG | + | chr4_2:8156087-8156106 | None:intergenic | 30.0% | |
ACTGTTAGGTTATATATGCA+TGG | - | chr4_2:8156395-8156414 | Msa0586790:intron | 30.0% | |
TCGGATATACTAACTCAAAA+GGG | + | chr4_2:8156775-8156794 | None:intergenic | 30.0% | |
ATCGGATATACTAACTCAAA+AGG | + | chr4_2:8156776-8156795 | None:intergenic | 30.0% | |
ATACATGTTTAGGCTATGTT+TGG | - | chr4_2:8156855-8156874 | Msa0586790:intron | 30.0% | |
! | GTTTGGTAAAAAATAGTGGA+TGG | - | chr4_2:8156872-8156891 | Msa0586790:intron | 30.0% |
!! | GCTCATAGTTGATAAATTAG+TGG | - | chr4_2:8156967-8156986 | Msa0586790:intron | 30.0% |
!! | TGATAAATTAGTGGGTTGAA+TGG | - | chr4_2:8156976-8156995 | Msa0586790:intron | 30.0% |
!! | GATAAATTAGTGGGTTGAAT+GGG | - | chr4_2:8156977-8156996 | Msa0586790:intron | 30.0% |
!! | ATAAATTAGTGGGTTGAATG+GGG | - | chr4_2:8156978-8156997 | Msa0586790:intron | 30.0% |
!! | ACAAATTTCTGAGGTTATAG+AGG | + | chr4_2:8157144-8157163 | None:intergenic | 30.0% |
ATCATTGTATATTGCATCTC+TGG | - | chr4_2:8157284-8157303 | Msa0586790:intron | 30.0% | |
! | GAAAAATATAAGTGATGGTG+TGG | - | chr4_2:8157430-8157449 | Msa0586790:intron | 30.0% |
! | TTTTCAACAAGATGCTCTTT+AGG | + | chr4_2:8157523-8157542 | None:intergenic | 30.0% |
!! | TAAAGAGCATCTTGTTGAAA+AGG | - | chr4_2:8157522-8157541 | Msa0586790:intron | 30.0% |
ACTTGATGAATTTCATCATG+AGG | + | chr4_2:8157820-8157839 | None:intergenic | 30.0% | |
AATCAACAAATAGCAAGAGA+TGG | + | chr4_2:8157849-8157868 | None:intergenic | 30.0% | |
!! | TTGCTATTTGTTGATTGCTT+TGG | - | chr4_2:8157853-8157872 | Msa0586790:intron | 30.0% |
CAACATAGAGTGGAAATATT+AGG | + | chr4_2:8158010-8158029 | None:intergenic | 30.0% | |
ATTGAAAATTGAGCTGACAA+AGG | - | chr4_2:8158072-8158091 | Msa0586790:intron | 30.0% | |
TGATGATAGATGCTTAATCT+TGG | + | chr4_2:8158347-8158366 | None:intergenic | 30.0% | |
! | TAGTCTGTAAAATTTTCGTC+TGG | - | chr4_2:8158602-8158621 | Msa0586790:intron | 30.0% |
TATTTGAATGTGCTTCTGTT+AGG | - | chr4_2:8158631-8158650 | Msa0586790:intron | 30.0% | |
! | TCATAACCAGTGTTGTTAAA+TGG | - | chr4_2:8158733-8158752 | Msa0586790:intron | 30.0% |
!!! | GATTTTTTGACAACCACTAT+AGG | - | chr4_2:8158769-8158788 | Msa0586790:intron | 30.0% |
!!! | GTGTTTATATGACGGATTTT+TGG | - | chr4_2:8158818-8158837 | Msa0586790:intron | 30.0% |
! | TCTTTTTATAAAAGCTTCCG+AGG | - | chr4_2:8158987-8159006 | Msa0586790:intron | 30.0% |
TTTATCTCTCTGAACTTACA+GGG | + | chr4_2:8159101-8159120 | None:intergenic | 30.0% | |
! | TTTTATCTCTCTGAACTTAC+AGG | + | chr4_2:8159102-8159121 | None:intergenic | 30.0% |
GTATCTCAGACAAATTAAGA+TGG | - | chr4_2:8159310-8159329 | Msa0586790:intron | 30.0% | |
AGACAAATTAAGATGGGTAT+TGG | - | chr4_2:8159317-8159336 | Msa0586790:intron | 30.0% | |
GACAAATTAAGATGGGTATT+GGG | - | chr4_2:8159318-8159337 | Msa0586790:intron | 30.0% | |
! | AGCTATGATTTTTATGACTC+TGG | + | chr4_2:8159383-8159402 | None:intergenic | 30.0% |
GTTATTGTTACTCATGTCTA+TGG | + | chr4_2:8159445-8159464 | None:intergenic | 30.0% | |
TTCCAACATAGGAACTAAAA+TGG | + | chr4_2:8159846-8159865 | None:intergenic | 30.0% | |
GAATTTAATCAGGGATCAAA+TGG | + | chr4_2:8159938-8159957 | None:intergenic | 30.0% | |
TGTGAACAAAATCTTAACCT+CGG | - | chr4_2:8159986-8160005 | Msa0586790:CDS | 30.0% | |
ATATAGCATAAATCGAAGCA+AGG | + | chr4_2:8160085-8160104 | None:intergenic | 30.0% | |
AATTCTTTCTGTGATGCTTT+AGG | - | chr4_2:8160242-8160261 | Msa0586790:CDS | 30.0% | |
CTTAGAGAGAACAAAACAAT+AGG | + | chr4_2:8160352-8160371 | None:intergenic | 30.0% | |
!! | TGTTTTGTTCTCTCTAAGTT+AGG | - | chr4_2:8160354-8160373 | Msa0586790:CDS | 30.0% |
CAGAATATACTTATAAAGCC+CGG | - | chr4_2:8160391-8160410 | Msa0586790:CDS | 30.0% | |
ACACTTGTAGAAGCAAAATA+TGG | + | chr4_2:8160549-8160568 | None:intergenic | 30.0% | |
GAAATGGATAAATGAAGCTT+AGG | - | chr4_2:8160775-8160794 | Msa0586790:five_prime_UTR | 30.0% | |
!! | TCTGACTTGTTGTAAGGATT+CGG | + | chr4_2:8155934-8155953 | None:intergenic | 35.0% |
GTTAATAGATCATCGGAATC+AGG | + | chr4_2:8156080-8156099 | None:intergenic | 35.0% | |
TACATATCCTGAAACGAGAT+TGG | + | chr4_2:8156113-8156132 | None:intergenic | 35.0% | |
AAATTGAGACCTCAAGTGAA+AGG | - | chr4_2:8156440-8156459 | Msa0586790:intron | 35.0% | |
! | CAATCTTTTCCTTTCACTTG+AGG | + | chr4_2:8156452-8156471 | None:intergenic | 35.0% |
CTCAAGTGAAAGGAAAAGAT+TGG | - | chr4_2:8156450-8156469 | Msa0586790:intron | 35.0% | |
! | CATTTCATCTTCCTCTAAAG+AGG | - | chr4_2:8156746-8156765 | Msa0586790:intron | 35.0% |
TGATAAAGTTCATTCGCTGT+CGG | + | chr4_2:8156910-8156929 | None:intergenic | 35.0% | |
TCTAGTAGTGTTTGAGCTTA+TGG | + | chr4_2:8157018-8157037 | None:intergenic | 35.0% | |
TTTGGCAAGACAAATTTCTG+AGG | + | chr4_2:8157153-8157172 | None:intergenic | 35.0% | |
CTTTATACTAAGGCTCTGTT+TGG | + | chr4_2:8157171-8157190 | None:intergenic | 35.0% | |
ATAGGTCCACTATTGTTTAG+TGG | - | chr4_2:8157209-8157228 | Msa0586790:intron | 35.0% | |
CCAATTCCACTAAACAATAG+TGG | + | chr4_2:8157218-8157237 | None:intergenic | 35.0% | |
CCACTATTGTTTAGTGGAAT+TGG | - | chr4_2:8157215-8157234 | Msa0586790:intron | 35.0% | |
ATATTCAGTGATGTCAATCG+CGG | + | chr4_2:8157264-8157283 | None:intergenic | 35.0% | |
TTTATAAAGCTCTTGCCAAG+TGG | - | chr4_2:8157362-8157381 | Msa0586790:intron | 35.0% | |
ATTGATATGTTGTCCCTGAT+TGG | - | chr4_2:8157469-8157488 | Msa0586790:intron | 35.0% | |
CAATTGTAGCTATCAGATGA+AGG | + | chr4_2:8157626-8157645 | None:intergenic | 35.0% | |
TTTCCGTAATTGAGAGTTGT+AGG | - | chr4_2:8157879-8157898 | Msa0586790:intron | 35.0% | |
! | TATTTTGCTTCACATGTCGA+TGG | - | chr4_2:8157940-8157959 | Msa0586790:intron | 35.0% |
ATCATCAGTTCTACACAAGA+AGG | - | chr4_2:8158360-8158379 | Msa0586790:intron | 35.0% | |
!!! | TTTTTTAACACCCTACCGTA+TGG | - | chr4_2:8158703-8158722 | Msa0586790:CDS | 35.0% |
!! | GTTAAATGGCATTGGTTTAG+CGG | - | chr4_2:8158747-8158766 | Msa0586790:intron | 35.0% |
! | CACTATAGGCATTTTGTGAA+GGG | - | chr4_2:8158783-8158802 | Msa0586790:intron | 35.0% |
! | ACTATAGGCATTTTGTGAAG+GGG | - | chr4_2:8158784-8158803 | Msa0586790:intron | 35.0% |
AAATATTCTGCAAAGGAGAC+TGG | - | chr4_2:8158884-8158903 | Msa0586790:intron | 35.0% | |
AATATTCTGCAAAGGAGACT+GGG | - | chr4_2:8158885-8158904 | Msa0586790:intron | 35.0% | |
GATTGAGATTGAGATTGAGA+TGG | + | chr4_2:8159192-8159211 | None:intergenic | 35.0% | |
ATCTCAATCTCAATCTCACT+TGG | - | chr4_2:8159197-8159216 | Msa0586790:intron | 35.0% | |
ATTGTTTATGTAGCAAGCTC+TGG | - | chr4_2:8159251-8159270 | Msa0586790:intron | 35.0% | |
ACTGACATGGCTTAATAGAT+GGG | - | chr4_2:8159750-8159769 | Msa0586790:intron | 35.0% | |
ATAGATGGGAATGTGTTTAC+AGG | - | chr4_2:8159764-8159783 | Msa0586790:intron | 35.0% | |
ACATAGGAACTAAAATGGAG+TGG | + | chr4_2:8159841-8159860 | None:intergenic | 35.0% | |
!!! | CTCCATTTTAGTTCCTATGT+TGG | - | chr4_2:8159841-8159860 | Msa0586790:intron | 35.0% |
! | ATCATTAGTTTAACATGGGG+TGG | - | chr4_2:8159894-8159913 | Msa0586790:intron | 35.0% |
CAAAATTATATTGAAGGCCG+AGG | + | chr4_2:8160006-8160025 | None:intergenic | 35.0% | |
TATTCATTGCACACTAGGAT+GGG | + | chr4_2:8160109-8160128 | None:intergenic | 35.0% | |
ATTCATGTGACTAGTGATGA+GGG | + | chr4_2:8160133-8160152 | None:intergenic | 35.0% | |
AATTCATGTGACTAGTGATG+AGG | + | chr4_2:8160134-8160153 | None:intergenic | 35.0% | |
TCTTTGACTGGGAGTAATTA+AGG | + | chr4_2:8160166-8160185 | None:intergenic | 35.0% | |
TTAATTACTCCCAGTCAAAG+AGG | - | chr4_2:8160165-8160184 | Msa0586790:CDS | 35.0% | |
AATAGTAATACTAGCCAGAC+CGG | + | chr4_2:8160209-8160228 | None:intergenic | 35.0% | |
TGATAGCAATGGTTCAAAAG+AGG | - | chr4_2:8160286-8160305 | Msa0586790:CDS | 35.0% | |
AAAACAATAGGAATCCCAGT+CGG | + | chr4_2:8160340-8160359 | None:intergenic | 35.0% | |
! | CGGGCTTTATAAGTATATTC+TGG | + | chr4_2:8160393-8160412 | None:intergenic | 35.0% |
TAGACTGGATAAAATCAGCT+AGG | + | chr4_2:8160484-8160503 | None:intergenic | 35.0% | |
! | AGTGTTGTTCCATATATCCA+TGG | - | chr4_2:8160564-8160583 | Msa0586790:CDS | 35.0% |
ATTCTTCAGCCATGGATATA+TGG | + | chr4_2:8160576-8160595 | None:intergenic | 35.0% | |
TTACGATGGAAAAGACAACA+AGG | + | chr4_2:8160735-8160754 | None:intergenic | 35.0% | |
!!! | GAGGGGTTTTTCTGAGATTA+GGG | + | chr4_2:8155764-8155783 | None:intergenic | 40.0% |
!!! | AGAGGGGTTTTTCTGAGATT+AGG | + | chr4_2:8155765-8155784 | None:intergenic | 40.0% |
!!! | TGGGTTTTGTGGTTTTGAGA+CGG | + | chr4_2:8155827-8155846 | None:intergenic | 40.0% |
TTGTTGTAAGGATTCGGAGA+AGG | + | chr4_2:8155928-8155947 | None:intergenic | 40.0% | |
!! | TGAGCTTCTGACTTGTTGTA+AGG | + | chr4_2:8155940-8155959 | None:intergenic | 40.0% |
!! | TTGGATTCGTTTTGTTGCGA+GGG | + | chr4_2:8156008-8156027 | None:intergenic | 40.0% |
!! | TTTGGATTCGTTTTGTTGCG+AGG | + | chr4_2:8156009-8156028 | None:intergenic | 40.0% |
GATACGTCGAAAACTACCAT+CGG | - | chr4_2:8156170-8156189 | Msa0586790:CDS | 40.0% | |
ATTGGACTTGATGTGATTCG+TGG | - | chr4_2:8156206-8156225 | Msa0586790:CDS | 40.0% | |
TTGTTACCGGATTCGATGTT+TGG | - | chr4_2:8156320-8156339 | Msa0586790:intron | 40.0% | |
TGTTACCGGATTCGATGTTT+GGG | - | chr4_2:8156321-8156340 | Msa0586790:intron | 40.0% | |
GATGTTTGGGAAGGAGATAA+GGG | - | chr4_2:8156334-8156353 | Msa0586790:intron | 40.0% | |
TTAGCCAAGGTGAATGATTC+AGG | - | chr4_2:8156362-8156381 | Msa0586790:intron | 40.0% | |
TAGCCAAGGTGAATGATTCA+GGG | - | chr4_2:8156363-8156382 | Msa0586790:intron | 40.0% | |
! | GTGAATGATTCAGGGAGTTT+TGG | - | chr4_2:8156371-8156390 | Msa0586790:intron | 40.0% |
TGAGAGGTTGAAGAAAGTGA+GGG | - | chr4_2:8156493-8156512 | Msa0586790:intron | 40.0% | |
GTTGAAGAAAGTGAGGGAAA+TGG | - | chr4_2:8156499-8156518 | Msa0586790:intron | 40.0% | |
GATGATAGACTAGAGAAGCT+TGG | - | chr4_2:8156723-8156742 | Msa0586790:intron | 40.0% | |
CAAAAGGGTTTCCTCTTTAG+AGG | + | chr4_2:8156760-8156779 | None:intergenic | 40.0% | |
GATAAAGTTCATTCGCTGTC+GGG | + | chr4_2:8156909-8156928 | None:intergenic | 40.0% | |
CTAGATAAGGTAGCTGATAG+CGG | - | chr4_2:8156936-8156955 | Msa0586790:intron | 40.0% | |
TGTTGTCAATTAGGGGCTAT+AGG | - | chr4_2:8157191-8157210 | Msa0586790:intron | 40.0% | |
ATATTGCATCTCTGGTCATG+TGG | - | chr4_2:8157292-8157311 | Msa0586790:intron | 40.0% | |
TCAACAAGATGCTCTTTAGG+AGG | + | chr4_2:8157520-8157539 | None:intergenic | 40.0% | |
CTGTCCTTCTTGAATTGTTG+AGG | - | chr4_2:8157594-8157613 | Msa0586790:intron | 40.0% | |
AGCACCTCAACAATTCAAGA+AGG | + | chr4_2:8157601-8157620 | None:intergenic | 40.0% | |
TGAATTAACTTCGTGGTGTC+TGG | - | chr4_2:8157915-8157934 | Msa0586790:intron | 40.0% | |
GTACTGGAATCAACATAGAG+TGG | + | chr4_2:8158020-8158039 | None:intergenic | 40.0% | |
! | TGTTATCTGGGTGAAAGTAC+TGG | + | chr4_2:8158036-8158055 | None:intergenic | 40.0% |
TCATGATTGGATCGAGTGTT+TGG | - | chr4_2:8158245-8158264 | Msa0586790:intron | 40.0% | |
TGAATGTGCTTCTGTTAGGT+AGG | - | chr4_2:8158635-8158654 | Msa0586790:intron | 40.0% | |
! | CCAATGCCATTTAACAACAC+TGG | + | chr4_2:8158742-8158761 | None:intergenic | 40.0% |
! | CCAGTGTTGTTAAATGGCAT+TGG | - | chr4_2:8158739-8158758 | Msa0586790:intron | 40.0% |
CCTTCACAAAATGCCTATAG+TGG | + | chr4_2:8158785-8158804 | None:intergenic | 40.0% | |
! | CCACTATAGGCATTTTGTGA+AGG | - | chr4_2:8158782-8158801 | Msa0586790:intron | 40.0% |
! | CTATAGGCATTTTGTGAAGG+GGG | - | chr4_2:8158785-8158804 | Msa0586790:intron | 40.0% |
GTCATATAAACACACCACTG+CGG | + | chr4_2:8158811-8158830 | None:intergenic | 40.0% | |
GCAGTGGTGTGTTTATATGA+CGG | - | chr4_2:8158810-8158829 | Msa0586790:intron | 40.0% | |
CCAATGTTGTTAATGGCAGA+TGG | + | chr4_2:8158844-8158863 | None:intergenic | 40.0% | |
CCATCTGCCATTAACAACAT+TGG | - | chr4_2:8158841-8158860 | Msa0586790:intron | 40.0% | |
GGTGTGACCAATGTTGTTAA+TGG | + | chr4_2:8158851-8158870 | None:intergenic | 40.0% | |
CCAATCATGATCGTGCATTA+TGG | + | chr4_2:8158912-8158931 | None:intergenic | 40.0% | |
CCATAATGCACGATCATGAT+TGG | - | chr4_2:8158909-8158928 | Msa0586790:intron | 40.0% | |
TGTTGAAATTTAGCCGTTCC+AGG | - | chr4_2:8159127-8159146 | Msa0586790:intron | 40.0% | |
GTTGAAATTTAGCCGTTCCA+GGG | - | chr4_2:8159128-8159147 | Msa0586790:intron | 40.0% | |
GAGATTGAGATGGTAGACAA+CGG | + | chr4_2:8159182-8159201 | None:intergenic | 40.0% | |
TTGGTAGATTGGATGAAAGC+TGG | - | chr4_2:8159576-8159595 | Msa0586790:intron | 40.0% | |
TGGTAGATTGGATGAAAGCT+GGG | - | chr4_2:8159577-8159596 | Msa0586790:intron | 40.0% | |
GACTGACATGGCTTAATAGA+TGG | - | chr4_2:8159749-8159768 | Msa0586790:intron | 40.0% | |
CTATTCATTGCACACTAGGA+TGG | + | chr4_2:8160110-8160129 | None:intergenic | 40.0% | |
TGACTGGGAGTAATTAAGGA+CGG | + | chr4_2:8160162-8160181 | None:intergenic | 40.0% | |
GCAATCTTTCCTCTTTGACT+GGG | + | chr4_2:8160177-8160196 | None:intergenic | 40.0% | |
AGCAATCTTTCCTCTTTGAC+TGG | + | chr4_2:8160178-8160197 | None:intergenic | 40.0% | |
GAAAGATTGCTACATAGCTC+CGG | - | chr4_2:8160187-8160206 | Msa0586790:CDS | 40.0% | |
!! | TGCTTTAGGATGTGCATTCT+CGG | - | chr4_2:8160256-8160275 | Msa0586790:CDS | 40.0% |
TATACTTATAAAGCCCGGAC+TGG | - | chr4_2:8160396-8160415 | Msa0586790:CDS | 40.0% | |
ATTGACTAAGCTGCTTGAAC+TGG | + | chr4_2:8160520-8160539 | None:intergenic | 40.0% | |
AGTTCAAGCAGCTTAGTCAA+TGG | - | chr4_2:8160519-8160538 | Msa0586790:CDS | 40.0% | |
TGGTGGAGAAAGAGAAAGAG+GGG | + | chr4_2:8155781-8155800 | None:intergenic | 45.0% | |
! | GTGGTGGAGAAAGAGAAAGA+GGG | + | chr4_2:8155782-8155801 | None:intergenic | 45.0% |
!! | AGAGTAGGGTTTGGGTTTTG+TGG | + | chr4_2:8155838-8155857 | None:intergenic | 45.0% |
TGTAAGGATTCGGAGAAGGA+GGG | + | chr4_2:8155924-8155943 | None:intergenic | 45.0% | |
TTGTAAGGATTCGGAGAAGG+AGG | + | chr4_2:8155925-8155944 | None:intergenic | 45.0% | |
!! | GAAGGTGTTGTGTTTGACGT+TGG | + | chr4_2:8155975-8155994 | None:intergenic | 45.0% |
!!! | TGGTTTTGGAACGGAAGCTT+TGG | + | chr4_2:8156052-8156071 | None:intergenic | 45.0% |
TAGATCATCGGAATCAGGTG+CGG | + | chr4_2:8156075-8156094 | None:intergenic | 45.0% | |
GAAGAAGCCAATCTCGTTTC+AGG | - | chr4_2:8156103-8156122 | Msa0586790:exon | 45.0% | |
TCGATCCAAAGATTCCGCTT+CGG | - | chr4_2:8156148-8156167 | Msa0586790:CDS | 45.0% | |
! | AGTTTTCGACGTATCCGAAG+CGG | + | chr4_2:8156165-8156184 | None:intergenic | 45.0% |
AAATTCGACGAATCAGACGC+CGG | - | chr4_2:8156247-8156266 | Msa0586790:CDS | 45.0% | |
GACATATTTGGTCTCCACCT+CGG | + | chr4_2:8156278-8156297 | None:intergenic | 45.0% | |
GTGGAGACCAAATATGTCAG+CGG | - | chr4_2:8156280-8156299 | Msa0586790:intron | 45.0% | |
TGGAGACCAAATATGTCAGC+GGG | - | chr4_2:8156281-8156300 | Msa0586790:intron | 45.0% | |
CTATTCCCCGCTGACATATT+TGG | + | chr4_2:8156290-8156309 | None:intergenic | 45.0% | |
AATATGTCAGCGGGGAATAG+TGG | - | chr4_2:8156290-8156309 | Msa0586790:intron | 45.0% | |
ATATGTCAGCGGGGAATAGT+GGG | - | chr4_2:8156291-8156310 | Msa0586790:intron | 45.0% | |
!! | TAGTGGGACGAGTTTGTTAC+CGG | - | chr4_2:8156307-8156326 | Msa0586790:intron | 45.0% |
TCCTTCCCAAACATCGAATC+CGG | + | chr4_2:8156329-8156348 | None:intergenic | 45.0% | |
CGATGTTTGGGAAGGAGATA+AGG | - | chr4_2:8156333-8156352 | Msa0586790:intron | 45.0% | |
TTGGGAAGGAGATAAGGGAT+AGG | - | chr4_2:8156339-8156358 | Msa0586790:intron | 45.0% | |
! | GATAAGGGATAGGTTAGCCA+AGG | - | chr4_2:8156349-8156368 | Msa0586790:intron | 45.0% |
ACTCCCTGAATCATTCACCT+TGG | + | chr4_2:8156369-8156388 | None:intergenic | 45.0% | |
!! | CAGGGAGTTTTGGTACTGTT+AGG | - | chr4_2:8156381-8156400 | Msa0586790:intron | 45.0% |
CTTCAACCTCTCACTCAACT+CGG | + | chr4_2:8156486-8156505 | None:intergenic | 45.0% | |
GTGAGAGGTTGAAGAAAGTG+AGG | - | chr4_2:8156492-8156511 | Msa0586790:intron | 45.0% | |
ATAAAGCTCTTGCCAAGTGG+AGG | - | chr4_2:8157365-8157384 | Msa0586790:intron | 45.0% | |
TAAAGCTCTTGCCAAGTGGA+GGG | - | chr4_2:8157366-8157385 | Msa0586790:intron | 45.0% | |
AGGGTTGTGGTCATGTTGTA+AGG | - | chr4_2:8157385-8157404 | Msa0586790:intron | 45.0% | |
GATATGTTGTCCCTGATTGG+TGG | - | chr4_2:8157472-8157491 | Msa0586790:intron | 45.0% | |
AACGTCAAAGTCAAAGCCTG+TGG | - | chr4_2:8157649-8157668 | Msa0586790:intron | 45.0% | |
CGGCCTACAACTCTCAATTA+CGG | + | chr4_2:8157885-8157904 | None:intergenic | 45.0% | |
TGCTTCACATGTCGATGGAT+AGG | - | chr4_2:8157945-8157964 | Msa0586790:intron | 45.0% | |
CAGCAGAGGACATGTTATCT+GGG | + | chr4_2:8158048-8158067 | None:intergenic | 45.0% | |
TCAGCAGAGGACATGTTATC+TGG | + | chr4_2:8158049-8158068 | None:intergenic | 45.0% | |
AAGATGTCCGAGTCAGATTG+TGG | - | chr4_2:8158109-8158128 | Msa0586790:intron | 45.0% | |
TCTGCTCGTGTTCAAGGTAA+AGG | - | chr4_2:8158133-8158152 | Msa0586790:intron | 45.0% | |
GGTTATGATGACTCGCCATA+CGG | + | chr4_2:8158721-8158740 | None:intergenic | 45.0% | |
AAAAGCTTCCGAGGAATGCT+AGG | - | chr4_2:8158996-8159015 | Msa0586790:intron | 45.0% | |
AAAGCTTCCGAGGAATGCTA+GGG | - | chr4_2:8158997-8159016 | Msa0586790:intron | 45.0% | |
TGTATGACCCTAGCATTCCT+CGG | + | chr4_2:8159007-8159026 | None:intergenic | 45.0% | |
AACTTACAGGGCCAGTTAAC+TGG | + | chr4_2:8159089-8159108 | None:intergenic | 45.0% | |
AGATGGTAGACAACGGAAAG+CGG | + | chr4_2:8159175-8159194 | None:intergenic | 45.0% | |
! | GTTTATGTAGCAAGCTCTGG+TGG | - | chr4_2:8159254-8159273 | Msa0586790:intron | 45.0% |
GGTAGATTGGATGAAAGCTG+GGG | - | chr4_2:8159578-8159597 | Msa0586790:intron | 45.0% | |
! | TTGCAAGAGCAGGACAGTTT+TGG | - | chr4_2:8159641-8159660 | Msa0586790:intron | 45.0% |
CTGGAGATGGTGAGTATAGA+AGG | - | chr4_2:8159670-8159689 | Msa0586790:intron | 45.0% | |
AGGGCTATTCATTGCACACT+AGG | + | chr4_2:8160114-8160133 | None:intergenic | 45.0% | |
TAGGATGTGCATTCTCGGAA+AGG | - | chr4_2:8160261-8160280 | Msa0586790:CDS | 45.0% | |
TCGGAAAGGTCTGATAGCAA+TGG | - | chr4_2:8160275-8160294 | Msa0586790:CDS | 45.0% | |
AATACCTCAGAAGAACCGAC+TGG | - | chr4_2:8160322-8160341 | Msa0586790:CDS | 45.0% | |
ATACCTCAGAAGAACCGACT+GGG | - | chr4_2:8160323-8160342 | Msa0586790:CDS | 45.0% | |
!! | TAAAGCCCGGACTGGTAAAT+CGG | - | chr4_2:8160404-8160423 | Msa0586790:CDS | 45.0% |
AGCAACACATTCTTCAGCCA+TGG | + | chr4_2:8160584-8160603 | None:intergenic | 45.0% | |
!! | GGTGGTGGAGAAAGAGAAAG+AGG | + | chr4_2:8155783-8155802 | None:intergenic | 50.0% |
TTCTCCACCACCACCAACAA+TGG | - | chr4_2:8155791-8155810 | Msa0586790:three_prime_UTR | 50.0% | |
!! | AGAAGAAGCGCCATTGTTGG+TGG | + | chr4_2:8155804-8155823 | None:intergenic | 50.0% |
! | AGTGGTGGAGAGTAGGGTTT+GGG | + | chr4_2:8155846-8155865 | None:intergenic | 50.0% |
! | TGATGGAGTGGTGGAGAGTA+GGG | + | chr4_2:8155852-8155871 | None:intergenic | 50.0% |
TCCAACTCCGGTGACAATGA+CGG | - | chr4_2:8155885-8155904 | Msa0586790:three_prime_UTR | 50.0% | |
! | TTTTGTTGCGAGGGAGAGAG+AGG | + | chr4_2:8155999-8156018 | None:intergenic | 50.0% |
CGTATCCGAAGCGGAATCTT+TGG | + | chr4_2:8156156-8156175 | None:intergenic | 50.0% | |
ACGTCGAAAACTACCATCGG+TGG | - | chr4_2:8156173-8156192 | Msa0586790:CDS | 50.0% | |
TCGAAAACTACCATCGGTGG+TGG | - | chr4_2:8156176-8156195 | Msa0586790:CDS | 50.0% | |
! | AAAACTACCATCGGTGGTGG+TGG | - | chr4_2:8156179-8156198 | Msa0586790:CDS | 50.0% |
! | AAACTACCATCGGTGGTGGT+GGG | - | chr4_2:8156180-8156199 | Msa0586790:CDS | 50.0% |
GGAGACCAAATATGTCAGCG+GGG | - | chr4_2:8156282-8156301 | Msa0586790:intron | 50.0% | |
ACCGGATTCGATGTTTGGGA+AGG | - | chr4_2:8156325-8156344 | Msa0586790:intron | 50.0% | |
GCGTCGCTATTCGACAACAT+CGG | + | chr4_2:8156794-8156813 | None:intergenic | 50.0% | |
GCTTGGAGTTCCACCAATCA+GGG | + | chr4_2:8157485-8157504 | None:intergenic | 50.0% | |
AGCTTGGAGTTCCACCAATC+AGG | + | chr4_2:8157486-8157505 | None:intergenic | 50.0% | |
! | GGAGGCTTTGACAAGTAGCT+TGG | + | chr4_2:8157502-8157521 | None:intergenic | 50.0% |
AGCAGAGCCACAATCTGACT+CGG | + | chr4_2:8158119-8158138 | None:intergenic | 50.0% | |
TGATGACTCGCCATACGGTA+GGG | + | chr4_2:8158716-8158735 | None:intergenic | 50.0% | |
ATGATGACTCGCCATACGGT+AGG | + | chr4_2:8158717-8158736 | None:intergenic | 50.0% | |
GATGGTAGACAACGGAAAGC+GGG | + | chr4_2:8159174-8159193 | None:intergenic | 50.0% | |
CCTGCTCTTGCAAGTTCTCT+TGG | + | chr4_2:8159634-8159653 | None:intergenic | 50.0% | |
CCAAGAGAACTTGCAAGAGC+AGG | - | chr4_2:8159631-8159650 | Msa0586790:intron | 50.0% | |
!! | CAAGAGCAGGACAGTTTTGG+TGG | - | chr4_2:8159644-8159663 | Msa0586790:intron | 50.0% |
!! | AGGACAGTTTTGGTGGAGAC+TGG | - | chr4_2:8159651-8159670 | Msa0586790:intron | 50.0% |
!! | GTTTTGGTGGAGACTGGAGA+TGG | - | chr4_2:8159657-8159676 | Msa0586790:intron | 50.0% |
GGGGTGGACAATGTAATCTG+CGG | - | chr4_2:8159910-8159929 | Msa0586790:CDS | 50.0% | |
ATTGCTACATAGCTCCGGTC+TGG | - | chr4_2:8160192-8160211 | Msa0586790:CDS | 50.0% | |
! | AATCCCAGTCGGTTCTTCTG+AGG | + | chr4_2:8160329-8160348 | None:intergenic | 50.0% |
!! | AAAGCCCGGACTGGTAAATC+GGG | - | chr4_2:8160405-8160424 | Msa0586790:CDS | 50.0% |
! | GGCTAGTCAGACACTTAGAC+TGG | + | chr4_2:8160499-8160518 | None:intergenic | 50.0% |
!! | AGAAGCGCCATTGTTGGTGG+TGG | + | chr4_2:8155801-8155820 | None:intergenic | 55.0% |
!! | CGGAGAAGAAGCGCCATTGT+TGG | + | chr4_2:8155807-8155826 | None:intergenic | 55.0% |
! | GAGTGGTGGAGAGTAGGGTT+TGG | + | chr4_2:8155847-8155866 | None:intergenic | 55.0% |
! | GTGATGGAGTGGTGGAGAGT+AGG | + | chr4_2:8155853-8155872 | None:intergenic | 55.0% |
!! | GAGAAGAGGTGATGGAGTGG+TGG | + | chr4_2:8155861-8155880 | None:intergenic | 55.0% |
!! | GTGGAGAAGAGGTGATGGAG+TGG | + | chr4_2:8155864-8155883 | None:intergenic | 55.0% |
TGGAGGTGGAGAAGAGGTGA+TGG | + | chr4_2:8155869-8155888 | None:intergenic | 55.0% | |
CTCTTCTCCACCTCCAACTC+CGG | - | chr4_2:8155873-8155892 | Msa0586790:three_prime_UTR | 55.0% | |
ATTGTCACCGGAGTTGGAGG+TGG | + | chr4_2:8155883-8155902 | None:intergenic | 55.0% | |
GTCATTGTCACCGGAGTTGG+AGG | + | chr4_2:8155886-8155905 | None:intergenic | 55.0% | |
ACCGTCATTGTCACCGGAGT+TGG | + | chr4_2:8155889-8155908 | None:intergenic | 55.0% | |
AACTCCGGTGACAATGACGG+TGG | - | chr4_2:8155888-8155907 | Msa0586790:three_prime_UTR | 55.0% | |
!!! | CAGGTGCGGTGGTTTTGGAA+CGG | + | chr4_2:8156061-8156080 | None:intergenic | 55.0% |
! | GGAATCAGGTGCGGTGGTTT+TGG | + | chr4_2:8156066-8156085 | None:intergenic | 55.0% |
ATCATCGGAATCAGGTGCGG+TGG | + | chr4_2:8156072-8156091 | None:intergenic | 55.0% | |
! | AACTACCATCGGTGGTGGTG+GGG | - | chr4_2:8156181-8156200 | Msa0586790:CDS | 55.0% |
! | CGATTGCCGAGTTGAGTGAG+AGG | - | chr4_2:8156477-8156496 | Msa0586790:intron | 55.0% |
GTGATGTCAATCGCGGATCG+CGG | + | chr4_2:8157257-8157276 | None:intergenic | 55.0% | |
TCTTGCCAAGTGGAGGGTTG+TGG | - | chr4_2:8157372-8157391 | Msa0586790:intron | 55.0% | |
CATGACCACAACCCTCCACT+TGG | + | chr4_2:8157380-8157399 | None:intergenic | 55.0% | |
! | TGTGGCTCTGCTCGTGTTCA+AGG | - | chr4_2:8158127-8158146 | Msa0586790:intron | 55.0% |
GTGGAGATGAGACCCTGGAA+CGG | + | chr4_2:8159143-8159162 | None:intergenic | 55.0% | |
GTCACCCGATTTACCAGTCC+GGG | + | chr4_2:8160412-8160431 | None:intergenic | 55.0% | |
CGTCACCCGATTTACCAGTC+CGG | + | chr4_2:8160413-8160432 | None:intergenic | 55.0% | |
!! | AGCGCCATTGTTGGTGGTGG+TGG | + | chr4_2:8155798-8155817 | None:intergenic | 60.0% |
CGGAGTTGGAGGTGGAGAAG+AGG | + | chr4_2:8155875-8155894 | None:intergenic | 60.0% | |
GTCGCCACCGTCATTGTCAC+CGG | + | chr4_2:8155895-8155914 | None:intergenic | 60.0% | |
TGCGAGGGAGAGAGAGGAGA+AGG | + | chr4_2:8155993-8156012 | None:intergenic | 60.0% | |
!! | ACTACCATCGGTGGTGGTGG+GGG | - | chr4_2:8156182-8156201 | Msa0586790:CDS | 60.0% |
AATACCCCCACCACCACCGA+TGG | + | chr4_2:8156189-8156208 | None:intergenic | 60.0% | |
!! | ATCGGTGGTGGTGGGGGTAT+TGG | - | chr4_2:8156188-8156207 | Msa0586790:CDS | 60.0% |
! | TTTTGTGAAGGGGGCCGCAG+TGG | - | chr4_2:8158794-8158813 | Msa0586790:intron | 60.0% |
GTGTCGTGGAGATGAGACCC+TGG | + | chr4_2:8159148-8159167 | None:intergenic | 60.0% | |
ATCAGACGCCGGTGACGCCG+AGG | - | chr4_2:8156258-8156277 | Msa0586790:CDS | 70.0% | |
GGTCTCCACCTCGGCGTCAC+CGG | + | chr4_2:8156269-8156288 | None:intergenic | 70.0% | |
! | CGGAAAGCGGGCTCGTGTCG+TGG | + | chr4_2:8159162-8159181 | None:intergenic | 70.0% |
AGACGCCGGTGACGCCGAGG+TGG | - | chr4_2:8156261-8156280 | Msa0586790:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 8155738 | 8160811 | 8155738 | ID=Msa0586790;Name=Msa0586790 |
chr4_2 | mRNA | 8155738 | 8160811 | 8155738 | ID=Msa0586790-mRNA-1;Parent=Msa0586790;Name=Msa0586790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=72|0.6|0.66|0.83|1|1|6|368|444 |
chr4_2 | exon | 8155738 | 8156285 | 8155738 | ID=Msa0586790-mRNA-1:exon:2174;Parent=Msa0586790-mRNA-1 |
chr4_2 | exon | 8158168 | 8158220 | 8158168 | ID=Msa0586790-mRNA-1:exon:2173;Parent=Msa0586790-mRNA-1 |
chr4_2 | exon | 8158401 | 8158512 | 8158401 | ID=Msa0586790-mRNA-1:exon:2172;Parent=Msa0586790-mRNA-1 |
chr4_2 | exon | 8158666 | 8158732 | 8158666 | ID=Msa0586790-mRNA-1:exon:2171;Parent=Msa0586790-mRNA-1 |
chr4_2 | exon | 8158998 | 8159088 | 8158998 | ID=Msa0586790-mRNA-1:exon:2170;Parent=Msa0586790-mRNA-1 |
chr4_2 | exon | 8159908 | 8160811 | 8159908 | ID=Msa0586790-mRNA-1:exon:2169;Parent=Msa0586790-mRNA-1 |
chr4_2 | five_prime_UTR | 8160740 | 8160811 | 8160740 | ID=Msa0586790-mRNA-1:five_prime_utr;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8159908 | 8160739 | 8159908 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8158998 | 8159088 | 8158998 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8158666 | 8158732 | 8158666 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8158401 | 8158512 | 8158401 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8158168 | 8158220 | 8158168 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | CDS | 8156106 | 8156285 | 8156106 | ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1 |
chr4_2 | three_prime_UTR | 8155738 | 8156105 | 8155738 | ID=Msa0586790-mRNA-1:three_prime_utr;Parent=Msa0586790-mRNA-1 |
Gene Sequence |
Protein sequence |