AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586790 MtrunA17_Chr4g0002731 88.000 450 21 5 1 444 1 423 0.0 730
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586790 AT1G15810.1 55.365 233 69 4 199 430 219 417 8.52e-76 243
Msa0586790 AT1G80620.1 39.073 453 187 14 16 432 15 414 8.90e-76 243

Find 135 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTTAGGTTTAATTTA+TGG 0.101635 4_2:-8155859 Msa0586790:three_prime_UTR
AATATTTCTTGTATCATAAT+TGG 0.161540 4_2:-8155774 Msa0586790:three_prime_UTR
GAAGAAGCCAATCTCGTTTC+AGG 0.197152 4_2:-8160424 Msa0586790:CDS
TCAGCAGAGGACATGTTATC+TGG 0.221149 4_2:+8158481 None:intergenic
TATGTTGGGGTTTATTTAAT+TGG 0.228847 4_2:+8156091 None:intergenic
TTTGCTCAAGATATCATCTT+TGG 0.250670 4_2:+8160503 None:intergenic
GGAATCAGGTGCGGTGGTTT+TGG 0.276997 4_2:+8160464 None:intergenic
CGGGCTTTATAAGTATATTC+TGG 0.291890 4_2:+8156137 None:intergenic
TTAGCCAAGGTGAATGATTC+AGG 0.297727 4_2:-8160165 Msa0586790:CDS
GTGAATGATTCAGGGAGTTT+TGG 0.301942 4_2:-8160156 Msa0586790:CDS
CGTATCCGAAGCGGAATCTT+TGG 0.307010 4_2:+8160374 None:intergenic
TTGCTATTTGTTGATTGCTT+TGG 0.309603 4_2:-8158674 Msa0586790:CDS
TTATATATGCATGGTGAATT+AGG 0.318193 4_2:-8160123 Msa0586790:CDS
TACTAACATGAAGCTTTATT+AGG 0.327657 4_2:+8159901 None:intergenic
CTATTCCCCGCTGACATATT+TGG 0.329042 4_2:+8160240 None:intergenic
TTGTTACCGGATTCGATGTT+TGG 0.341309 4_2:-8160207 Msa0586790:CDS
AGTGGTGGAGAGTAGGGTTT+GGG 0.342066 4_2:+8160684 None:intergenic
ATTCTTCAGCCATGGATATA+TGG 0.342367 4_2:+8155954 None:intergenic
CGATGTTTGGGAAGGAGATA+AGG 0.345042 4_2:-8160194 Msa0586790:CDS
ACACTTGTAGAAGCAAAATA+TGG 0.357125 4_2:+8155981 None:intergenic
AGCTTGGAGTTCCACCAATC+AGG 0.379248 4_2:+8159044 None:intergenic
TCTTGTATCATAATTGGAAA+TGG 0.387100 4_2:-8155768 Msa0586790:three_prime_UTR
TAAAGCCCGGACTGGTAAAT+CGG 0.389131 4_2:-8156123 Msa0586790:CDS
TCTGACTTGTTGTAAGGATT+CGG 0.391613 4_2:+8160596 None:intergenic
AATATGTCAGCGGGGAATAG+TGG 0.398052 4_2:-8160237 Msa0586790:CDS
TGATGGAGTGGTGGAGAGTA+GGG 0.398977 4_2:+8160678 None:intergenic
TAGTGGGACGAGTTTGTTAC+CGG 0.405301 4_2:-8160220 Msa0586790:CDS
GCTTAGGAAATAATTCTGTT+TGG 0.411342 4_2:-8155736 None:intergenic
GAGTGGTGGAGAGTAGGGTT+TGG 0.415098 4_2:+8160683 None:intergenic
GTGATGGAGTGGTGGAGAGT+AGG 0.417770 4_2:+8160677 None:intergenic
TGCTTTAGGATGTGCATTCT+CGG 0.419325 4_2:-8156271 Msa0586790:intron
TGTGGCTCTGCTCGTGTTCA+AGG 0.419529 4_2:-8158400 Msa0586790:intron
TAAAGAGCATCTTGTTGAAA+AGG 0.423407 4_2:-8159005 Msa0586790:CDS
CTTAGAGAGAACAAAACAAT+AGG 0.423531 4_2:+8156178 None:intergenic
CCATAAATTAAACCTAAATC+AGG 0.428382 4_2:+8155859 None:intergenic
CTACAAAATAAACAATTGAT+TGG 0.428999 4_2:+8155822 None:intergenic
CTCAAGTGAAAGGAAAAGAT+TGG 0.434328 4_2:-8160077 Msa0586790:CDS
GTTAATAGATCATCGGAATC+AGG 0.434445 4_2:+8160450 None:intergenic
TGGAGGTGGAGAAGAGGTGA+TGG 0.434925 4_2:+8160661 None:intergenic
AAAACTACCATCGGTGGTGG+TGG 0.439256 4_2:-8160348 Msa0586790:CDS
GTTGAAGAAAGTGAGGGAAA+TGG 0.440483 4_2:-8160028 Msa0586790:CDS
TGTTACCGGATTCGATGTTT+GGG 0.445980 4_2:-8160206 Msa0586790:CDS
GGTCTCCACCTCGGCGTCAC+CGG 0.450181 4_2:+8160261 None:intergenic
ATTGACTAAGCTGCTTGAAC+TGG 0.450433 4_2:+8156010 None:intergenic
TGATGATAGATGCTTAATCT+TGG 0.455799 4_2:+8158183 None:intergenic
GATGTTTGGGAAGGAGATAA+GGG 0.455958 4_2:-8160193 Msa0586790:CDS
CTCTTCTCCACCTCCAACTC+CGG 0.457603 4_2:-8160654 Msa0586790:CDS
GAAATGGATAAATGAAGCTT+AGG 0.459164 4_2:-8155752 Msa0586790:three_prime_UTR
ACCGTCATTGTCACCGGAGT+TGG 0.459507 4_2:+8160641 None:intergenic
GTTGAACACTTTATTTGTAT+CGG 0.460097 4_2:+8159972 None:intergenic
AACTACCATCGGTGGTGGTG+GGG 0.461512 4_2:-8160346 Msa0586790:CDS
AGCGCCATTGTTGGTGGTGG+TGG 0.462114 4_2:+8160732 None:intergenic
GGAGGCTTTGACAAGTAGCT+TGG 0.462551 4_2:+8159028 None:intergenic
ATTGATATGTTGTCCCTGAT+TGG 0.468754 4_2:-8159058 Msa0586790:CDS
TACATATCCTGAAACGAGAT+TGG 0.469151 4_2:+8160417 None:intergenic
ACTACCATCGGTGGTGGTGG+GGG 0.471057 4_2:-8160345 Msa0586790:CDS
TGAGCTTCTGACTTGTTGTA+AGG 0.477275 4_2:+8160590 None:intergenic
CGGAGAAGAAGCGCCATTGT+TGG 0.491513 4_2:+8160723 None:intergenic
AAACTACCATCGGTGGTGGT+GGG 0.493683 4_2:-8160347 Msa0586790:CDS
TGCGAGGGAGAGAGAGGAGA+AGG 0.494280 4_2:+8160537 None:intergenic
TCCTTCCCAAACATCGAATC+CGG 0.494755 4_2:+8160201 None:intergenic
GTCGCCACCGTCATTGTCAC+CGG 0.497517 4_2:+8160635 None:intergenic
AGTTCAAGCAGCTTAGTCAA+TGG 0.497786 4_2:-8156008 Msa0586790:three_prime_UTR
GTGAGAGGTTGAAGAAAGTG+AGG 0.507809 4_2:-8160035 Msa0586790:CDS
GTCATTGTCACCGGAGTTGG+AGG 0.510211 4_2:+8160644 None:intergenic
TGGAGACCAAATATGTCAGC+GGG 0.513868 4_2:-8160246 Msa0586790:CDS
CAGCAGAGGACATGTTATCT+GGG 0.517850 4_2:+8158482 None:intergenic
ATTGTCACCGGAGTTGGAGG+TGG 0.527310 4_2:+8160647 None:intergenic
GGTGGTGGAGAAAGAGAAAG+AGG 0.528464 4_2:+8160747 None:intergenic
AAAGCCCGGACTGGTAAATC+GGG 0.529645 4_2:-8156122 Msa0586790:CDS
GTGGAGAAGAGGTGATGGAG+TGG 0.532903 4_2:+8160666 None:intergenic
TCAACAAGATGCTCTTTAGG+AGG 0.535728 4_2:+8159010 None:intergenic
GGCTAGTCAGACACTTAGAC+TGG 0.536045 4_2:+8156031 None:intergenic
GAGAAGAGGTGATGGAGTGG+TGG 0.540124 4_2:+8160669 None:intergenic
AGAAGAAGCGCCATTGTTGG+TGG 0.541690 4_2:+8160726 None:intergenic
CTTCTGAGTTAATAGATCAT+CGG 0.542609 4_2:+8160443 None:intergenic
TAGGATGTGCATTCTCGGAA+AGG 0.545917 4_2:-8156266 Msa0586790:CDS
GCTTGGAGTTCCACCAATCA+GGG 0.546915 4_2:+8159045 None:intergenic
TTCTCCACCACCACCAACAA+TGG 0.548692 4_2:-8160736 Msa0586790:exon
TGTAAGGATTCGGAGAAGGA+GGG 0.550289 4_2:+8160606 None:intergenic
ATCATCAGTTCTACACAAGA+AGG 0.554571 4_2:-8158167 Msa0586790:intron
CTTCAACCTCTCACTCAACT+CGG 0.554778 4_2:+8160044 None:intergenic
GTCACCCGATTTACCAGTCC+GGG 0.556020 4_2:+8156118 None:intergenic
CGATTGCCGAGTTGAGTGAG+AGG 0.557053 4_2:-8160050 Msa0586790:CDS
TTGTAAGGATTCGGAGAAGG+AGG 0.557469 4_2:+8160605 None:intergenic
CGGAGTTGGAGGTGGAGAAG+AGG 0.562478 4_2:+8160655 None:intergenic
ATATGTCAGCGGGGAATAGT+GGG 0.562574 4_2:-8160236 Msa0586790:CDS
AGCAACACATTCTTCAGCCA+TGG 0.562640 4_2:+8155946 None:intergenic
ACCGGATTCGATGTTTGGGA+AGG 0.563280 4_2:-8160202 Msa0586790:CDS
TGATAGCAATGGTTCAAAAG+AGG 0.564231 4_2:-8156241 Msa0586790:CDS
TTGTTGTAAGGATTCGGAGA+AGG 0.565751 4_2:+8160602 None:intergenic
TAGCCAAGGTGAATGATTCA+GGG 0.570378 4_2:-8160164 Msa0586790:CDS
CGTCACCCGATTTACCAGTC+CGG 0.571673 4_2:+8156117 None:intergenic
GAAGGTGTTGTGTTTGACGT+TGG 0.572394 4_2:+8160555 None:intergenic
TCGATCCAAAGATTCCGCTT+CGG 0.574006 4_2:-8160379 Msa0586790:CDS
ATTGGACTTGATGTGATTCG+TGG 0.579464 4_2:-8160321 Msa0586790:CDS
AAGATGTCCGAGTCAGATTG+TGG 0.579927 4_2:-8158418 Msa0586790:CDS
CAGAATATACTTATAAAGCC+CGG 0.580244 4_2:-8156136 Msa0586790:CDS
TGGTGGAGAAAGAGAAAGAG+GGG 0.580844 4_2:+8160749 None:intergenic
TGAGAGGTTGAAGAAAGTGA+GGG 0.583053 4_2:-8160034 Msa0586790:CDS
GTGGTGGAGAAAGAGAAAGA+GGG 0.584438 4_2:+8160748 None:intergenic
ACTTGATGAATTTCATCATG+AGG 0.585281 4_2:+8158710 None:intergenic
TATACTTATAAAGCCCGGAC+TGG 0.588412 4_2:-8156131 Msa0586790:CDS
TTGGGAAGGAGATAAGGGAT+AGG 0.591410 4_2:-8160188 Msa0586790:CDS
AAATTGAGACCTCAAGTGAA+AGG 0.593143 4_2:-8160087 Msa0586790:CDS
ATTGAAAATTGAGCTGACAA+AGG 0.594958 4_2:-8158455 Msa0586790:CDS
AATCCCAGTCGGTTCTTCTG+AGG 0.595536 4_2:+8156201 None:intergenic
TCGAAAACTACCATCGGTGG+TGG 0.596020 4_2:-8160351 Msa0586790:CDS
AATACCTCAGAAGAACCGAC+TGG 0.596907 4_2:-8156205 Msa0586790:CDS
AATCAACAAATAGCAAGAGA+TGG 0.599289 4_2:+8158681 None:intergenic
AGTGTTGTTCCATATATCCA+TGG 0.599971 4_2:-8155963 Msa0586790:three_prime_UTR
GATAAGGGATAGGTTAGCCA+AGG 0.602083 4_2:-8160178 Msa0586790:CDS
AGAAGCGCCATTGTTGGTGG+TGG 0.602122 4_2:+8160729 None:intergenic
TAGACTGGATAAAATCAGCT+AGG 0.602525 4_2:+8156046 None:intergenic
GACATATTTGGTCTCCACCT+CGG 0.603815 4_2:+8160252 None:intergenic
TCCAACTCCGGTGACAATGA+CGG 0.604175 4_2:-8160642 Msa0586790:CDS
GATATGTTGTCCCTGATTGG+TGG 0.604709 4_2:-8159055 Msa0586790:CDS
AGACGCCGGTGACGCCGAGG+TGG 0.621545 4_2:-8160266 Msa0586790:CDS
AGCAGAGCCACAATCTGACT+CGG 0.621918 4_2:+8158411 None:intergenic
ATCATCGGAATCAGGTGCGG+TGG 0.623646 4_2:+8160458 None:intergenic
ACTCCCTGAATCATTCACCT+TGG 0.637166 4_2:+8160161 None:intergenic
ACTGTTAGGTTATATATGCA+TGG 0.640796 4_2:-8160132 Msa0586790:CDS
TCGGAAAGGTCTGATAGCAA+TGG 0.642289 4_2:-8156252 Msa0586790:CDS
ATCAGACGCCGGTGACGCCG+AGG 0.642782 4_2:-8160269 Msa0586790:CDS
GATACGTCGAAAACTACCAT+CGG 0.667277 4_2:-8160357 Msa0586790:CDS
TGATACAAGAAATATTACGA+TGG 0.667765 4_2:+8155781 None:intergenic
ATACCTCAGAAGAACCGACT+GGG 0.671133 4_2:-8156204 Msa0586790:CDS
GTGGAGACCAAATATGTCAG+CGG 0.677529 4_2:-8160247 Msa0586790:CDS
TAGATCATCGGAATCAGGTG+CGG 0.679666 4_2:+8160455 None:intergenic
AAATTCGACGAATCAGACGC+CGG 0.695623 4_2:-8160280 Msa0586790:CDS
ACGTCGAAAACTACCATCGG+TGG 0.701049 4_2:-8160354 Msa0586790:CDS
AAAACAATAGGAATCCCAGT+CGG 0.725069 4_2:+8156190 None:intergenic
AACTCCGGTGACAATGACGG+TGG 0.731984 4_2:-8160639 Msa0586790:CDS
TTACGATGGAAAAGACAACA+AGG 0.736796 4_2:+8155795 None:intergenic
GGAGACCAAATATGTCAGCG+GGG 0.770843 4_2:-8160245 Msa0586790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAATCTATTGTAGA+TGG - chr4_2:8157330-8157349 Msa0586790:intron 15.0%
!! TATATGAAAAATATAAGTGA+TGG - chr4_2:8157425-8157444 Msa0586790:intron 15.0%
!! AATATATTAATGTTTGACTA+TGG + chr4_2:8157758-8157777 None:intergenic 15.0%
!!! TTCTTTTAAATCTAGTATAA+CGG - chr4_2:8158556-8158575 Msa0586790:intron 15.0%
!!! TTTTTGAATTTTAAGTTTGT+TGG + chr4_2:8159505-8159524 None:intergenic 15.0%
!!! TCTATTTTTAATCATGTAAT+TGG + chr4_2:8159731-8159750 None:intergenic 15.0%
!!! TTTTTTCAATAGTTTATGTT+GGG + chr4_2:8160453-8160472 None:intergenic 15.0%
!!! TTTTTTTCAATAGTTTATGT+TGG + chr4_2:8160454-8160473 None:intergenic 15.0%
!! AATATTTCTTGTATCATAAT+TGG - chr4_2:8160753-8160772 Msa0586790:five_prime_UTR 15.0%
!!! TTATTTTGCAATACATGTTT+AGG - chr4_2:8156845-8156864 Msa0586790:intron 20.0%
!! TTTATCATTGATACTAGATA+AGG - chr4_2:8156923-8156942 Msa0586790:intron 20.0%
!! ATGACCAAAATATATTTGTT+TGG + chr4_2:8157104-8157123 None:intergenic 20.0%
!!! AACAAATATATTTTGGTCAT+AGG - chr4_2:8157104-8157123 Msa0586790:intron 20.0%
!!! ACAAATATATTTTGGTCATA+GGG - chr4_2:8157105-8157124 Msa0586790:intron 20.0%
!! TAATAGCTTAAAAAAAAGTG+GGG + chr4_2:8157794-8157813 None:intergenic 20.0%
!! GTAATAGCTTAAAAAAAAGT+GGG + chr4_2:8157795-8157814 None:intergenic 20.0%
!! TGTAATAGCTTAAAAAAAAG+TGG + chr4_2:8157796-8157815 None:intergenic 20.0%
!! AGTTAATTCAAAATATCAAG+CGG + chr4_2:8157905-8157924 None:intergenic 20.0%
!! TGTTCGATATTAAATTTAGA+CGG - chr4_2:8158186-8158205 Msa0586790:CDS 20.0%
!! TAAAGTATAGCAAACATATT+TGG + chr4_2:8158214-8158233 None:intergenic 20.0%
!!! TACTAATTTTCTTTCATGAT+TGG - chr4_2:8158232-8158251 Msa0586790:intron 20.0%
!!! AGTGTTTGGAATATATTAAT+AGG - chr4_2:8158259-8158278 Msa0586790:intron 20.0%
!! AAAAAAATTAGTACTAGAGT+TGG + chr4_2:8158685-8158704 None:intergenic 20.0%
!! GAATATTTATAAAGTTGTAC+AGG + chr4_2:8158872-8158891 None:intergenic 20.0%
!! ACTTTATAAATATTCTGCAA+AGG - chr4_2:8158877-8158896 Msa0586790:intron 20.0%
!! CTGGTAAAGATTAAAAATAA+GGG + chr4_2:8159070-8159089 None:intergenic 20.0%
!! ACTGGTAAAGATTAAAAATA+AGG + chr4_2:8159071-8159090 None:intergenic 20.0%
!!! GAAAATTGTTTTAGTTAACA+TGG + chr4_2:8159280-8159299 None:intergenic 20.0%
!!! TGTTAACTAAAACAATTTTC+AGG - chr4_2:8159280-8159299 Msa0586790:intron 20.0%
!! TCATAAAAATCATAGCTTAA+AGG - chr4_2:8159386-8159405 Msa0586790:intron 20.0%
!!! ACAATATTCTTTTACTAAGA+TGG + chr4_2:8159557-8159576 None:intergenic 20.0%
!! TCTTAGTAAAAGAATATTGT+TGG - chr4_2:8159557-8159576 Msa0586790:intron 20.0%
!! TTATGAGAAATGAAATACTA+GGG + chr4_2:8159814-8159833 None:intergenic 20.0%
!! TGAACATAAGAATTTAATCA+GGG + chr4_2:8159947-8159966 None:intergenic 20.0%
!! ATGAACATAAGAATTTAATC+AGG + chr4_2:8159948-8159967 None:intergenic 20.0%
!! CCAATTCAAAATTATATTGA+AGG + chr4_2:8160012-8160031 None:intergenic 20.0%
!!! CCTTCAATATAATTTTGAAT+TGG - chr4_2:8160009-8160028 Msa0586790:CDS 20.0%
!!! TTTTTCAATAGTTTATGTTG+GGG + chr4_2:8160452-8160471 None:intergenic 20.0%
!! TCAGGCAAAAATAATATAAT+GGG + chr4_2:8160653-8160672 None:intergenic 20.0%
!! ATCAGGCAAAAATAATATAA+TGG + chr4_2:8160654-8160673 None:intergenic 20.0%
!!! ATATTATTTTTGCCTGATTT+AGG - chr4_2:8160656-8160675 Msa0586790:CDS 20.0%
!! CTACAAAATAAACAATTGAT+TGG + chr4_2:8160708-8160727 None:intergenic 20.0%
!!! CAATCAATTGTTTATTTTGT+AGG - chr4_2:8160706-8160725 Msa0586790:CDS 20.0%
! TTATATATGCATGGTGAATT+AGG - chr4_2:8156404-8156423 Msa0586790:intron 25.0%
!! GTTGAACACTTTATTTGTAT+CGG + chr4_2:8156558-8156577 None:intergenic 25.0%
!!! TACTAACATGAAGCTTTATT+AGG + chr4_2:8156629-8156648 None:intergenic 25.0%
! ATCATCGTATCATAACTAAA+AGG + chr4_2:8156706-8156725 None:intergenic 25.0%
! CTATGTTTGGTAAAAAATAG+TGG - chr4_2:8156868-8156887 Msa0586790:intron 25.0%
!!! CTCATAGTTGATAAATTAGT+GGG - chr4_2:8156968-8156987 Msa0586790:intron 25.0%
!!! ACAAGTTTAAGCTTTTTTAC+TGG + chr4_2:8157067-8157086 None:intergenic 25.0%
!! TGTGCCAAACAAATATATTT+TGG - chr4_2:8157097-8157116 Msa0586790:intron 25.0%
!!! CAAATATATTTTGGTCATAG+GGG - chr4_2:8157106-8157125 Msa0586790:intron 25.0%
! ATTGACAACACTTTATACTA+AGG + chr4_2:8157181-8157200 None:intergenic 25.0%
!!! AGTATAAAGTGTTGTCAATT+AGG - chr4_2:8157182-8157201 Msa0586790:intron 25.0%
!!! GTATAAAGTGTTGTCAATTA+GGG - chr4_2:8157183-8157202 Msa0586790:intron 25.0%
!!! TATAAAGTGTTGTCAATTAG+GGG - chr4_2:8157184-8157203 Msa0586790:intron 25.0%
! AATATAGAGTTATAAACCAC+AGG + chr4_2:8157668-8157687 None:intergenic 25.0%
!! AGCATTTTAGATTAATCGAA+TGG + chr4_2:8157713-8157732 None:intergenic 25.0%
!!! GATATTTTGAATTAACTTCG+TGG - chr4_2:8157908-8157927 Msa0586790:intron 25.0%
!!! GGCACATTTTGTTTTTTTAA+TGG - chr4_2:8157966-8157985 Msa0586790:intron 25.0%
!!! AATTTTCAATTTTTCAGCAG+AGG + chr4_2:8158062-8158081 None:intergenic 25.0%
! GTTCGATATTAAATTTAGAC+GGG - chr4_2:8158187-8158206 Msa0586790:CDS 25.0%
! AACATACAAATCTTCTATTG+AGG + chr4_2:8158454-8158473 None:intergenic 25.0%
! AACAATGTTTGTACATCAAA+TGG + chr4_2:8158480-8158499 None:intergenic 25.0%
!! ATTTTACAGACTATGAAAAC+TGG + chr4_2:8158595-8158614 None:intergenic 25.0%
! TTTAATCTTTACCAGTTAAC+TGG - chr4_2:8159075-8159094 Msa0586790:intron 25.0%
! TTGCTACATAAACAATATGT+TGG + chr4_2:8159247-8159266 None:intergenic 25.0%
! TATCTCAGACAAATTAAGAT+GGG - chr4_2:8159311-8159330 Msa0586790:intron 25.0%
! ATTGGGTATTATTATGAAGA+TGG - chr4_2:8159335-8159354 Msa0586790:intron 25.0%
! TTGGGTATTATTATGAAGAT+GGG - chr4_2:8159336-8159355 Msa0586790:intron 25.0%
! TTATTGTTACTCATGTCTAT+GGG + chr4_2:8159444-8159463 None:intergenic 25.0%
!! AAAGAATATTGTTGGTAGAT+TGG - chr4_2:8159565-8159584 Msa0586790:intron 25.0%
! AATATCATTCACATCGAAAT+AGG - chr4_2:8159702-8159721 Msa0586790:intron 25.0%
! TGATTAAAAATAGACTGACA+TGG - chr4_2:8159737-8159756 Msa0586790:intron 25.0%
! CTTATGAGAAATGAAATACT+AGG + chr4_2:8159815-8159834 None:intergenic 25.0%
! AAAATTACAACTTCCAACAT+AGG + chr4_2:8159857-8159876 None:intergenic 25.0%
!! AGTTCATCATTAGTTTAACA+TGG - chr4_2:8159889-8159908 Msa0586790:intron 25.0%
!! GTTCATCATTAGTTTAACAT+GGG - chr4_2:8159890-8159909 Msa0586790:intron 25.0%
!! TTCATCATTAGTTTAACATG+GGG - chr4_2:8159891-8159910 Msa0586790:intron 25.0%
! TATGTTGGGGTTTATTTAAT+TGG + chr4_2:8160439-8160458 None:intergenic 25.0%
! TTCGTACAGAAAAAAGAAAA+TGG + chr4_2:8160607-8160626 None:intergenic 25.0%
! CCATAAATTAAACCTAAATC+AGG + chr4_2:8160671-8160690 None:intergenic 25.0%
!! CCTGATTTAGGTTTAATTTA+TGG - chr4_2:8160668-8160687 Msa0586790:CDS 25.0%
! TGATACAAGAAATATTACGA+TGG + chr4_2:8160749-8160768 None:intergenic 25.0%
! TCTTGTATCATAATTGGAAA+TGG - chr4_2:8160759-8160778 Msa0586790:five_prime_UTR 25.0%
TTTGCTCAAGATATCATCTT+TGG + chr4_2:8156027-8156046 None:intergenic 30.0%
CTTCTGAGTTAATAGATCAT+CGG + chr4_2:8156087-8156106 None:intergenic 30.0%
ACTGTTAGGTTATATATGCA+TGG - chr4_2:8156395-8156414 Msa0586790:intron 30.0%
TCGGATATACTAACTCAAAA+GGG + chr4_2:8156775-8156794 None:intergenic 30.0%
ATCGGATATACTAACTCAAA+AGG + chr4_2:8156776-8156795 None:intergenic 30.0%
ATACATGTTTAGGCTATGTT+TGG - chr4_2:8156855-8156874 Msa0586790:intron 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG - chr4_2:8156872-8156891 Msa0586790:intron 30.0%
!! GCTCATAGTTGATAAATTAG+TGG - chr4_2:8156967-8156986 Msa0586790:intron 30.0%
!! TGATAAATTAGTGGGTTGAA+TGG - chr4_2:8156976-8156995 Msa0586790:intron 30.0%
!! GATAAATTAGTGGGTTGAAT+GGG - chr4_2:8156977-8156996 Msa0586790:intron 30.0%
!! ATAAATTAGTGGGTTGAATG+GGG - chr4_2:8156978-8156997 Msa0586790:intron 30.0%
!! ACAAATTTCTGAGGTTATAG+AGG + chr4_2:8157144-8157163 None:intergenic 30.0%
ATCATTGTATATTGCATCTC+TGG - chr4_2:8157284-8157303 Msa0586790:intron 30.0%
! GAAAAATATAAGTGATGGTG+TGG - chr4_2:8157430-8157449 Msa0586790:intron 30.0%
! TTTTCAACAAGATGCTCTTT+AGG + chr4_2:8157523-8157542 None:intergenic 30.0%
!! TAAAGAGCATCTTGTTGAAA+AGG - chr4_2:8157522-8157541 Msa0586790:intron 30.0%
ACTTGATGAATTTCATCATG+AGG + chr4_2:8157820-8157839 None:intergenic 30.0%
AATCAACAAATAGCAAGAGA+TGG + chr4_2:8157849-8157868 None:intergenic 30.0%
!! TTGCTATTTGTTGATTGCTT+TGG - chr4_2:8157853-8157872 Msa0586790:intron 30.0%
CAACATAGAGTGGAAATATT+AGG + chr4_2:8158010-8158029 None:intergenic 30.0%
ATTGAAAATTGAGCTGACAA+AGG - chr4_2:8158072-8158091 Msa0586790:intron 30.0%
TGATGATAGATGCTTAATCT+TGG + chr4_2:8158347-8158366 None:intergenic 30.0%
! TAGTCTGTAAAATTTTCGTC+TGG - chr4_2:8158602-8158621 Msa0586790:intron 30.0%
TATTTGAATGTGCTTCTGTT+AGG - chr4_2:8158631-8158650 Msa0586790:intron 30.0%
! TCATAACCAGTGTTGTTAAA+TGG - chr4_2:8158733-8158752 Msa0586790:intron 30.0%
!!! GATTTTTTGACAACCACTAT+AGG - chr4_2:8158769-8158788 Msa0586790:intron 30.0%
!!! GTGTTTATATGACGGATTTT+TGG - chr4_2:8158818-8158837 Msa0586790:intron 30.0%
! TCTTTTTATAAAAGCTTCCG+AGG - chr4_2:8158987-8159006 Msa0586790:intron 30.0%
TTTATCTCTCTGAACTTACA+GGG + chr4_2:8159101-8159120 None:intergenic 30.0%
! TTTTATCTCTCTGAACTTAC+AGG + chr4_2:8159102-8159121 None:intergenic 30.0%
GTATCTCAGACAAATTAAGA+TGG - chr4_2:8159310-8159329 Msa0586790:intron 30.0%
AGACAAATTAAGATGGGTAT+TGG - chr4_2:8159317-8159336 Msa0586790:intron 30.0%
GACAAATTAAGATGGGTATT+GGG - chr4_2:8159318-8159337 Msa0586790:intron 30.0%
! AGCTATGATTTTTATGACTC+TGG + chr4_2:8159383-8159402 None:intergenic 30.0%
GTTATTGTTACTCATGTCTA+TGG + chr4_2:8159445-8159464 None:intergenic 30.0%
TTCCAACATAGGAACTAAAA+TGG + chr4_2:8159846-8159865 None:intergenic 30.0%
GAATTTAATCAGGGATCAAA+TGG + chr4_2:8159938-8159957 None:intergenic 30.0%
TGTGAACAAAATCTTAACCT+CGG - chr4_2:8159986-8160005 Msa0586790:CDS 30.0%
ATATAGCATAAATCGAAGCA+AGG + chr4_2:8160085-8160104 None:intergenic 30.0%
AATTCTTTCTGTGATGCTTT+AGG - chr4_2:8160242-8160261 Msa0586790:CDS 30.0%
CTTAGAGAGAACAAAACAAT+AGG + chr4_2:8160352-8160371 None:intergenic 30.0%
!! TGTTTTGTTCTCTCTAAGTT+AGG - chr4_2:8160354-8160373 Msa0586790:CDS 30.0%
CAGAATATACTTATAAAGCC+CGG - chr4_2:8160391-8160410 Msa0586790:CDS 30.0%
ACACTTGTAGAAGCAAAATA+TGG + chr4_2:8160549-8160568 None:intergenic 30.0%
GAAATGGATAAATGAAGCTT+AGG - chr4_2:8160775-8160794 Msa0586790:five_prime_UTR 30.0%
!! TCTGACTTGTTGTAAGGATT+CGG + chr4_2:8155934-8155953 None:intergenic 35.0%
GTTAATAGATCATCGGAATC+AGG + chr4_2:8156080-8156099 None:intergenic 35.0%
TACATATCCTGAAACGAGAT+TGG + chr4_2:8156113-8156132 None:intergenic 35.0%
AAATTGAGACCTCAAGTGAA+AGG - chr4_2:8156440-8156459 Msa0586790:intron 35.0%
! CAATCTTTTCCTTTCACTTG+AGG + chr4_2:8156452-8156471 None:intergenic 35.0%
CTCAAGTGAAAGGAAAAGAT+TGG - chr4_2:8156450-8156469 Msa0586790:intron 35.0%
! CATTTCATCTTCCTCTAAAG+AGG - chr4_2:8156746-8156765 Msa0586790:intron 35.0%
TGATAAAGTTCATTCGCTGT+CGG + chr4_2:8156910-8156929 None:intergenic 35.0%
TCTAGTAGTGTTTGAGCTTA+TGG + chr4_2:8157018-8157037 None:intergenic 35.0%
TTTGGCAAGACAAATTTCTG+AGG + chr4_2:8157153-8157172 None:intergenic 35.0%
CTTTATACTAAGGCTCTGTT+TGG + chr4_2:8157171-8157190 None:intergenic 35.0%
ATAGGTCCACTATTGTTTAG+TGG - chr4_2:8157209-8157228 Msa0586790:intron 35.0%
CCAATTCCACTAAACAATAG+TGG + chr4_2:8157218-8157237 None:intergenic 35.0%
CCACTATTGTTTAGTGGAAT+TGG - chr4_2:8157215-8157234 Msa0586790:intron 35.0%
ATATTCAGTGATGTCAATCG+CGG + chr4_2:8157264-8157283 None:intergenic 35.0%
TTTATAAAGCTCTTGCCAAG+TGG - chr4_2:8157362-8157381 Msa0586790:intron 35.0%
ATTGATATGTTGTCCCTGAT+TGG - chr4_2:8157469-8157488 Msa0586790:intron 35.0%
CAATTGTAGCTATCAGATGA+AGG + chr4_2:8157626-8157645 None:intergenic 35.0%
TTTCCGTAATTGAGAGTTGT+AGG - chr4_2:8157879-8157898 Msa0586790:intron 35.0%
! TATTTTGCTTCACATGTCGA+TGG - chr4_2:8157940-8157959 Msa0586790:intron 35.0%
ATCATCAGTTCTACACAAGA+AGG - chr4_2:8158360-8158379 Msa0586790:intron 35.0%
!!! TTTTTTAACACCCTACCGTA+TGG - chr4_2:8158703-8158722 Msa0586790:CDS 35.0%
!! GTTAAATGGCATTGGTTTAG+CGG - chr4_2:8158747-8158766 Msa0586790:intron 35.0%
! CACTATAGGCATTTTGTGAA+GGG - chr4_2:8158783-8158802 Msa0586790:intron 35.0%
! ACTATAGGCATTTTGTGAAG+GGG - chr4_2:8158784-8158803 Msa0586790:intron 35.0%
AAATATTCTGCAAAGGAGAC+TGG - chr4_2:8158884-8158903 Msa0586790:intron 35.0%
AATATTCTGCAAAGGAGACT+GGG - chr4_2:8158885-8158904 Msa0586790:intron 35.0%
GATTGAGATTGAGATTGAGA+TGG + chr4_2:8159192-8159211 None:intergenic 35.0%
ATCTCAATCTCAATCTCACT+TGG - chr4_2:8159197-8159216 Msa0586790:intron 35.0%
ATTGTTTATGTAGCAAGCTC+TGG - chr4_2:8159251-8159270 Msa0586790:intron 35.0%
ACTGACATGGCTTAATAGAT+GGG - chr4_2:8159750-8159769 Msa0586790:intron 35.0%
ATAGATGGGAATGTGTTTAC+AGG - chr4_2:8159764-8159783 Msa0586790:intron 35.0%
ACATAGGAACTAAAATGGAG+TGG + chr4_2:8159841-8159860 None:intergenic 35.0%
!!! CTCCATTTTAGTTCCTATGT+TGG - chr4_2:8159841-8159860 Msa0586790:intron 35.0%
! ATCATTAGTTTAACATGGGG+TGG - chr4_2:8159894-8159913 Msa0586790:intron 35.0%
CAAAATTATATTGAAGGCCG+AGG + chr4_2:8160006-8160025 None:intergenic 35.0%
TATTCATTGCACACTAGGAT+GGG + chr4_2:8160109-8160128 None:intergenic 35.0%
ATTCATGTGACTAGTGATGA+GGG + chr4_2:8160133-8160152 None:intergenic 35.0%
AATTCATGTGACTAGTGATG+AGG + chr4_2:8160134-8160153 None:intergenic 35.0%
TCTTTGACTGGGAGTAATTA+AGG + chr4_2:8160166-8160185 None:intergenic 35.0%
TTAATTACTCCCAGTCAAAG+AGG - chr4_2:8160165-8160184 Msa0586790:CDS 35.0%
AATAGTAATACTAGCCAGAC+CGG + chr4_2:8160209-8160228 None:intergenic 35.0%
TGATAGCAATGGTTCAAAAG+AGG - chr4_2:8160286-8160305 Msa0586790:CDS 35.0%
AAAACAATAGGAATCCCAGT+CGG + chr4_2:8160340-8160359 None:intergenic 35.0%
! CGGGCTTTATAAGTATATTC+TGG + chr4_2:8160393-8160412 None:intergenic 35.0%
TAGACTGGATAAAATCAGCT+AGG + chr4_2:8160484-8160503 None:intergenic 35.0%
! AGTGTTGTTCCATATATCCA+TGG - chr4_2:8160564-8160583 Msa0586790:CDS 35.0%
ATTCTTCAGCCATGGATATA+TGG + chr4_2:8160576-8160595 None:intergenic 35.0%
TTACGATGGAAAAGACAACA+AGG + chr4_2:8160735-8160754 None:intergenic 35.0%
!!! GAGGGGTTTTTCTGAGATTA+GGG + chr4_2:8155764-8155783 None:intergenic 40.0%
!!! AGAGGGGTTTTTCTGAGATT+AGG + chr4_2:8155765-8155784 None:intergenic 40.0%
!!! TGGGTTTTGTGGTTTTGAGA+CGG + chr4_2:8155827-8155846 None:intergenic 40.0%
TTGTTGTAAGGATTCGGAGA+AGG + chr4_2:8155928-8155947 None:intergenic 40.0%
!! TGAGCTTCTGACTTGTTGTA+AGG + chr4_2:8155940-8155959 None:intergenic 40.0%
!! TTGGATTCGTTTTGTTGCGA+GGG + chr4_2:8156008-8156027 None:intergenic 40.0%
!! TTTGGATTCGTTTTGTTGCG+AGG + chr4_2:8156009-8156028 None:intergenic 40.0%
GATACGTCGAAAACTACCAT+CGG - chr4_2:8156170-8156189 Msa0586790:CDS 40.0%
ATTGGACTTGATGTGATTCG+TGG - chr4_2:8156206-8156225 Msa0586790:CDS 40.0%
TTGTTACCGGATTCGATGTT+TGG - chr4_2:8156320-8156339 Msa0586790:intron 40.0%
TGTTACCGGATTCGATGTTT+GGG - chr4_2:8156321-8156340 Msa0586790:intron 40.0%
GATGTTTGGGAAGGAGATAA+GGG - chr4_2:8156334-8156353 Msa0586790:intron 40.0%
TTAGCCAAGGTGAATGATTC+AGG - chr4_2:8156362-8156381 Msa0586790:intron 40.0%
TAGCCAAGGTGAATGATTCA+GGG - chr4_2:8156363-8156382 Msa0586790:intron 40.0%
! GTGAATGATTCAGGGAGTTT+TGG - chr4_2:8156371-8156390 Msa0586790:intron 40.0%
TGAGAGGTTGAAGAAAGTGA+GGG - chr4_2:8156493-8156512 Msa0586790:intron 40.0%
GTTGAAGAAAGTGAGGGAAA+TGG - chr4_2:8156499-8156518 Msa0586790:intron 40.0%
GATGATAGACTAGAGAAGCT+TGG - chr4_2:8156723-8156742 Msa0586790:intron 40.0%
CAAAAGGGTTTCCTCTTTAG+AGG + chr4_2:8156760-8156779 None:intergenic 40.0%
GATAAAGTTCATTCGCTGTC+GGG + chr4_2:8156909-8156928 None:intergenic 40.0%
CTAGATAAGGTAGCTGATAG+CGG - chr4_2:8156936-8156955 Msa0586790:intron 40.0%
TGTTGTCAATTAGGGGCTAT+AGG - chr4_2:8157191-8157210 Msa0586790:intron 40.0%
ATATTGCATCTCTGGTCATG+TGG - chr4_2:8157292-8157311 Msa0586790:intron 40.0%
TCAACAAGATGCTCTTTAGG+AGG + chr4_2:8157520-8157539 None:intergenic 40.0%
CTGTCCTTCTTGAATTGTTG+AGG - chr4_2:8157594-8157613 Msa0586790:intron 40.0%
AGCACCTCAACAATTCAAGA+AGG + chr4_2:8157601-8157620 None:intergenic 40.0%
TGAATTAACTTCGTGGTGTC+TGG - chr4_2:8157915-8157934 Msa0586790:intron 40.0%
GTACTGGAATCAACATAGAG+TGG + chr4_2:8158020-8158039 None:intergenic 40.0%
! TGTTATCTGGGTGAAAGTAC+TGG + chr4_2:8158036-8158055 None:intergenic 40.0%
TCATGATTGGATCGAGTGTT+TGG - chr4_2:8158245-8158264 Msa0586790:intron 40.0%
TGAATGTGCTTCTGTTAGGT+AGG - chr4_2:8158635-8158654 Msa0586790:intron 40.0%
! CCAATGCCATTTAACAACAC+TGG + chr4_2:8158742-8158761 None:intergenic 40.0%
! CCAGTGTTGTTAAATGGCAT+TGG - chr4_2:8158739-8158758 Msa0586790:intron 40.0%
CCTTCACAAAATGCCTATAG+TGG + chr4_2:8158785-8158804 None:intergenic 40.0%
! CCACTATAGGCATTTTGTGA+AGG - chr4_2:8158782-8158801 Msa0586790:intron 40.0%
! CTATAGGCATTTTGTGAAGG+GGG - chr4_2:8158785-8158804 Msa0586790:intron 40.0%
GTCATATAAACACACCACTG+CGG + chr4_2:8158811-8158830 None:intergenic 40.0%
GCAGTGGTGTGTTTATATGA+CGG - chr4_2:8158810-8158829 Msa0586790:intron 40.0%
CCAATGTTGTTAATGGCAGA+TGG + chr4_2:8158844-8158863 None:intergenic 40.0%
CCATCTGCCATTAACAACAT+TGG - chr4_2:8158841-8158860 Msa0586790:intron 40.0%
GGTGTGACCAATGTTGTTAA+TGG + chr4_2:8158851-8158870 None:intergenic 40.0%
CCAATCATGATCGTGCATTA+TGG + chr4_2:8158912-8158931 None:intergenic 40.0%
CCATAATGCACGATCATGAT+TGG - chr4_2:8158909-8158928 Msa0586790:intron 40.0%
TGTTGAAATTTAGCCGTTCC+AGG - chr4_2:8159127-8159146 Msa0586790:intron 40.0%
GTTGAAATTTAGCCGTTCCA+GGG - chr4_2:8159128-8159147 Msa0586790:intron 40.0%
GAGATTGAGATGGTAGACAA+CGG + chr4_2:8159182-8159201 None:intergenic 40.0%
TTGGTAGATTGGATGAAAGC+TGG - chr4_2:8159576-8159595 Msa0586790:intron 40.0%
TGGTAGATTGGATGAAAGCT+GGG - chr4_2:8159577-8159596 Msa0586790:intron 40.0%
GACTGACATGGCTTAATAGA+TGG - chr4_2:8159749-8159768 Msa0586790:intron 40.0%
CTATTCATTGCACACTAGGA+TGG + chr4_2:8160110-8160129 None:intergenic 40.0%
TGACTGGGAGTAATTAAGGA+CGG + chr4_2:8160162-8160181 None:intergenic 40.0%
GCAATCTTTCCTCTTTGACT+GGG + chr4_2:8160177-8160196 None:intergenic 40.0%
AGCAATCTTTCCTCTTTGAC+TGG + chr4_2:8160178-8160197 None:intergenic 40.0%
GAAAGATTGCTACATAGCTC+CGG - chr4_2:8160187-8160206 Msa0586790:CDS 40.0%
!! TGCTTTAGGATGTGCATTCT+CGG - chr4_2:8160256-8160275 Msa0586790:CDS 40.0%
TATACTTATAAAGCCCGGAC+TGG - chr4_2:8160396-8160415 Msa0586790:CDS 40.0%
ATTGACTAAGCTGCTTGAAC+TGG + chr4_2:8160520-8160539 None:intergenic 40.0%
AGTTCAAGCAGCTTAGTCAA+TGG - chr4_2:8160519-8160538 Msa0586790:CDS 40.0%
TGGTGGAGAAAGAGAAAGAG+GGG + chr4_2:8155781-8155800 None:intergenic 45.0%
! GTGGTGGAGAAAGAGAAAGA+GGG + chr4_2:8155782-8155801 None:intergenic 45.0%
!! AGAGTAGGGTTTGGGTTTTG+TGG + chr4_2:8155838-8155857 None:intergenic 45.0%
TGTAAGGATTCGGAGAAGGA+GGG + chr4_2:8155924-8155943 None:intergenic 45.0%
TTGTAAGGATTCGGAGAAGG+AGG + chr4_2:8155925-8155944 None:intergenic 45.0%
!! GAAGGTGTTGTGTTTGACGT+TGG + chr4_2:8155975-8155994 None:intergenic 45.0%
!!! TGGTTTTGGAACGGAAGCTT+TGG + chr4_2:8156052-8156071 None:intergenic 45.0%
TAGATCATCGGAATCAGGTG+CGG + chr4_2:8156075-8156094 None:intergenic 45.0%
GAAGAAGCCAATCTCGTTTC+AGG - chr4_2:8156103-8156122 Msa0586790:exon 45.0%
TCGATCCAAAGATTCCGCTT+CGG - chr4_2:8156148-8156167 Msa0586790:CDS 45.0%
! AGTTTTCGACGTATCCGAAG+CGG + chr4_2:8156165-8156184 None:intergenic 45.0%
AAATTCGACGAATCAGACGC+CGG - chr4_2:8156247-8156266 Msa0586790:CDS 45.0%
GACATATTTGGTCTCCACCT+CGG + chr4_2:8156278-8156297 None:intergenic 45.0%
GTGGAGACCAAATATGTCAG+CGG - chr4_2:8156280-8156299 Msa0586790:intron 45.0%
TGGAGACCAAATATGTCAGC+GGG - chr4_2:8156281-8156300 Msa0586790:intron 45.0%
CTATTCCCCGCTGACATATT+TGG + chr4_2:8156290-8156309 None:intergenic 45.0%
AATATGTCAGCGGGGAATAG+TGG - chr4_2:8156290-8156309 Msa0586790:intron 45.0%
ATATGTCAGCGGGGAATAGT+GGG - chr4_2:8156291-8156310 Msa0586790:intron 45.0%
!! TAGTGGGACGAGTTTGTTAC+CGG - chr4_2:8156307-8156326 Msa0586790:intron 45.0%
TCCTTCCCAAACATCGAATC+CGG + chr4_2:8156329-8156348 None:intergenic 45.0%
CGATGTTTGGGAAGGAGATA+AGG - chr4_2:8156333-8156352 Msa0586790:intron 45.0%
TTGGGAAGGAGATAAGGGAT+AGG - chr4_2:8156339-8156358 Msa0586790:intron 45.0%
! GATAAGGGATAGGTTAGCCA+AGG - chr4_2:8156349-8156368 Msa0586790:intron 45.0%
ACTCCCTGAATCATTCACCT+TGG + chr4_2:8156369-8156388 None:intergenic 45.0%
!! CAGGGAGTTTTGGTACTGTT+AGG - chr4_2:8156381-8156400 Msa0586790:intron 45.0%
CTTCAACCTCTCACTCAACT+CGG + chr4_2:8156486-8156505 None:intergenic 45.0%
GTGAGAGGTTGAAGAAAGTG+AGG - chr4_2:8156492-8156511 Msa0586790:intron 45.0%
ATAAAGCTCTTGCCAAGTGG+AGG - chr4_2:8157365-8157384 Msa0586790:intron 45.0%
TAAAGCTCTTGCCAAGTGGA+GGG - chr4_2:8157366-8157385 Msa0586790:intron 45.0%
AGGGTTGTGGTCATGTTGTA+AGG - chr4_2:8157385-8157404 Msa0586790:intron 45.0%
GATATGTTGTCCCTGATTGG+TGG - chr4_2:8157472-8157491 Msa0586790:intron 45.0%
AACGTCAAAGTCAAAGCCTG+TGG - chr4_2:8157649-8157668 Msa0586790:intron 45.0%
CGGCCTACAACTCTCAATTA+CGG + chr4_2:8157885-8157904 None:intergenic 45.0%
TGCTTCACATGTCGATGGAT+AGG - chr4_2:8157945-8157964 Msa0586790:intron 45.0%
CAGCAGAGGACATGTTATCT+GGG + chr4_2:8158048-8158067 None:intergenic 45.0%
TCAGCAGAGGACATGTTATC+TGG + chr4_2:8158049-8158068 None:intergenic 45.0%
AAGATGTCCGAGTCAGATTG+TGG - chr4_2:8158109-8158128 Msa0586790:intron 45.0%
TCTGCTCGTGTTCAAGGTAA+AGG - chr4_2:8158133-8158152 Msa0586790:intron 45.0%
GGTTATGATGACTCGCCATA+CGG + chr4_2:8158721-8158740 None:intergenic 45.0%
AAAAGCTTCCGAGGAATGCT+AGG - chr4_2:8158996-8159015 Msa0586790:intron 45.0%
AAAGCTTCCGAGGAATGCTA+GGG - chr4_2:8158997-8159016 Msa0586790:intron 45.0%
TGTATGACCCTAGCATTCCT+CGG + chr4_2:8159007-8159026 None:intergenic 45.0%
AACTTACAGGGCCAGTTAAC+TGG + chr4_2:8159089-8159108 None:intergenic 45.0%
AGATGGTAGACAACGGAAAG+CGG + chr4_2:8159175-8159194 None:intergenic 45.0%
! GTTTATGTAGCAAGCTCTGG+TGG - chr4_2:8159254-8159273 Msa0586790:intron 45.0%
GGTAGATTGGATGAAAGCTG+GGG - chr4_2:8159578-8159597 Msa0586790:intron 45.0%
! TTGCAAGAGCAGGACAGTTT+TGG - chr4_2:8159641-8159660 Msa0586790:intron 45.0%
CTGGAGATGGTGAGTATAGA+AGG - chr4_2:8159670-8159689 Msa0586790:intron 45.0%
AGGGCTATTCATTGCACACT+AGG + chr4_2:8160114-8160133 None:intergenic 45.0%
TAGGATGTGCATTCTCGGAA+AGG - chr4_2:8160261-8160280 Msa0586790:CDS 45.0%
TCGGAAAGGTCTGATAGCAA+TGG - chr4_2:8160275-8160294 Msa0586790:CDS 45.0%
AATACCTCAGAAGAACCGAC+TGG - chr4_2:8160322-8160341 Msa0586790:CDS 45.0%
ATACCTCAGAAGAACCGACT+GGG - chr4_2:8160323-8160342 Msa0586790:CDS 45.0%
!! TAAAGCCCGGACTGGTAAAT+CGG - chr4_2:8160404-8160423 Msa0586790:CDS 45.0%
AGCAACACATTCTTCAGCCA+TGG + chr4_2:8160584-8160603 None:intergenic 45.0%
!! GGTGGTGGAGAAAGAGAAAG+AGG + chr4_2:8155783-8155802 None:intergenic 50.0%
TTCTCCACCACCACCAACAA+TGG - chr4_2:8155791-8155810 Msa0586790:three_prime_UTR 50.0%
!! AGAAGAAGCGCCATTGTTGG+TGG + chr4_2:8155804-8155823 None:intergenic 50.0%
! AGTGGTGGAGAGTAGGGTTT+GGG + chr4_2:8155846-8155865 None:intergenic 50.0%
! TGATGGAGTGGTGGAGAGTA+GGG + chr4_2:8155852-8155871 None:intergenic 50.0%
TCCAACTCCGGTGACAATGA+CGG - chr4_2:8155885-8155904 Msa0586790:three_prime_UTR 50.0%
! TTTTGTTGCGAGGGAGAGAG+AGG + chr4_2:8155999-8156018 None:intergenic 50.0%
CGTATCCGAAGCGGAATCTT+TGG + chr4_2:8156156-8156175 None:intergenic 50.0%
ACGTCGAAAACTACCATCGG+TGG - chr4_2:8156173-8156192 Msa0586790:CDS 50.0%
TCGAAAACTACCATCGGTGG+TGG - chr4_2:8156176-8156195 Msa0586790:CDS 50.0%
! AAAACTACCATCGGTGGTGG+TGG - chr4_2:8156179-8156198 Msa0586790:CDS 50.0%
! AAACTACCATCGGTGGTGGT+GGG - chr4_2:8156180-8156199 Msa0586790:CDS 50.0%
GGAGACCAAATATGTCAGCG+GGG - chr4_2:8156282-8156301 Msa0586790:intron 50.0%
ACCGGATTCGATGTTTGGGA+AGG - chr4_2:8156325-8156344 Msa0586790:intron 50.0%
GCGTCGCTATTCGACAACAT+CGG + chr4_2:8156794-8156813 None:intergenic 50.0%
GCTTGGAGTTCCACCAATCA+GGG + chr4_2:8157485-8157504 None:intergenic 50.0%
AGCTTGGAGTTCCACCAATC+AGG + chr4_2:8157486-8157505 None:intergenic 50.0%
! GGAGGCTTTGACAAGTAGCT+TGG + chr4_2:8157502-8157521 None:intergenic 50.0%
AGCAGAGCCACAATCTGACT+CGG + chr4_2:8158119-8158138 None:intergenic 50.0%
TGATGACTCGCCATACGGTA+GGG + chr4_2:8158716-8158735 None:intergenic 50.0%
ATGATGACTCGCCATACGGT+AGG + chr4_2:8158717-8158736 None:intergenic 50.0%
GATGGTAGACAACGGAAAGC+GGG + chr4_2:8159174-8159193 None:intergenic 50.0%
CCTGCTCTTGCAAGTTCTCT+TGG + chr4_2:8159634-8159653 None:intergenic 50.0%
CCAAGAGAACTTGCAAGAGC+AGG - chr4_2:8159631-8159650 Msa0586790:intron 50.0%
!! CAAGAGCAGGACAGTTTTGG+TGG - chr4_2:8159644-8159663 Msa0586790:intron 50.0%
!! AGGACAGTTTTGGTGGAGAC+TGG - chr4_2:8159651-8159670 Msa0586790:intron 50.0%
!! GTTTTGGTGGAGACTGGAGA+TGG - chr4_2:8159657-8159676 Msa0586790:intron 50.0%
GGGGTGGACAATGTAATCTG+CGG - chr4_2:8159910-8159929 Msa0586790:CDS 50.0%
ATTGCTACATAGCTCCGGTC+TGG - chr4_2:8160192-8160211 Msa0586790:CDS 50.0%
! AATCCCAGTCGGTTCTTCTG+AGG + chr4_2:8160329-8160348 None:intergenic 50.0%
!! AAAGCCCGGACTGGTAAATC+GGG - chr4_2:8160405-8160424 Msa0586790:CDS 50.0%
! GGCTAGTCAGACACTTAGAC+TGG + chr4_2:8160499-8160518 None:intergenic 50.0%
!! AGAAGCGCCATTGTTGGTGG+TGG + chr4_2:8155801-8155820 None:intergenic 55.0%
!! CGGAGAAGAAGCGCCATTGT+TGG + chr4_2:8155807-8155826 None:intergenic 55.0%
! GAGTGGTGGAGAGTAGGGTT+TGG + chr4_2:8155847-8155866 None:intergenic 55.0%
! GTGATGGAGTGGTGGAGAGT+AGG + chr4_2:8155853-8155872 None:intergenic 55.0%
!! GAGAAGAGGTGATGGAGTGG+TGG + chr4_2:8155861-8155880 None:intergenic 55.0%
!! GTGGAGAAGAGGTGATGGAG+TGG + chr4_2:8155864-8155883 None:intergenic 55.0%
TGGAGGTGGAGAAGAGGTGA+TGG + chr4_2:8155869-8155888 None:intergenic 55.0%
CTCTTCTCCACCTCCAACTC+CGG - chr4_2:8155873-8155892 Msa0586790:three_prime_UTR 55.0%
ATTGTCACCGGAGTTGGAGG+TGG + chr4_2:8155883-8155902 None:intergenic 55.0%
GTCATTGTCACCGGAGTTGG+AGG + chr4_2:8155886-8155905 None:intergenic 55.0%
ACCGTCATTGTCACCGGAGT+TGG + chr4_2:8155889-8155908 None:intergenic 55.0%
AACTCCGGTGACAATGACGG+TGG - chr4_2:8155888-8155907 Msa0586790:three_prime_UTR 55.0%
!!! CAGGTGCGGTGGTTTTGGAA+CGG + chr4_2:8156061-8156080 None:intergenic 55.0%
! GGAATCAGGTGCGGTGGTTT+TGG + chr4_2:8156066-8156085 None:intergenic 55.0%
ATCATCGGAATCAGGTGCGG+TGG + chr4_2:8156072-8156091 None:intergenic 55.0%
! AACTACCATCGGTGGTGGTG+GGG - chr4_2:8156181-8156200 Msa0586790:CDS 55.0%
! CGATTGCCGAGTTGAGTGAG+AGG - chr4_2:8156477-8156496 Msa0586790:intron 55.0%
GTGATGTCAATCGCGGATCG+CGG + chr4_2:8157257-8157276 None:intergenic 55.0%
TCTTGCCAAGTGGAGGGTTG+TGG - chr4_2:8157372-8157391 Msa0586790:intron 55.0%
CATGACCACAACCCTCCACT+TGG + chr4_2:8157380-8157399 None:intergenic 55.0%
! TGTGGCTCTGCTCGTGTTCA+AGG - chr4_2:8158127-8158146 Msa0586790:intron 55.0%
GTGGAGATGAGACCCTGGAA+CGG + chr4_2:8159143-8159162 None:intergenic 55.0%
GTCACCCGATTTACCAGTCC+GGG + chr4_2:8160412-8160431 None:intergenic 55.0%
CGTCACCCGATTTACCAGTC+CGG + chr4_2:8160413-8160432 None:intergenic 55.0%
!! AGCGCCATTGTTGGTGGTGG+TGG + chr4_2:8155798-8155817 None:intergenic 60.0%
CGGAGTTGGAGGTGGAGAAG+AGG + chr4_2:8155875-8155894 None:intergenic 60.0%
GTCGCCACCGTCATTGTCAC+CGG + chr4_2:8155895-8155914 None:intergenic 60.0%
TGCGAGGGAGAGAGAGGAGA+AGG + chr4_2:8155993-8156012 None:intergenic 60.0%
!! ACTACCATCGGTGGTGGTGG+GGG - chr4_2:8156182-8156201 Msa0586790:CDS 60.0%
AATACCCCCACCACCACCGA+TGG + chr4_2:8156189-8156208 None:intergenic 60.0%
!! ATCGGTGGTGGTGGGGGTAT+TGG - chr4_2:8156188-8156207 Msa0586790:CDS 60.0%
! TTTTGTGAAGGGGGCCGCAG+TGG - chr4_2:8158794-8158813 Msa0586790:intron 60.0%
GTGTCGTGGAGATGAGACCC+TGG + chr4_2:8159148-8159167 None:intergenic 60.0%
ATCAGACGCCGGTGACGCCG+AGG - chr4_2:8156258-8156277 Msa0586790:CDS 70.0%
GGTCTCCACCTCGGCGTCAC+CGG + chr4_2:8156269-8156288 None:intergenic 70.0%
! CGGAAAGCGGGCTCGTGTCG+TGG + chr4_2:8159162-8159181 None:intergenic 70.0%
AGACGCCGGTGACGCCGAGG+TGG - chr4_2:8156261-8156280 Msa0586790:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 8155738 8160811 8155738 ID=Msa0586790;Name=Msa0586790
chr4_2 mRNA 8155738 8160811 8155738 ID=Msa0586790-mRNA-1;Parent=Msa0586790;Name=Msa0586790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=72|0.6|0.66|0.83|1|1|6|368|444
chr4_2 exon 8155738 8156285 8155738 ID=Msa0586790-mRNA-1:exon:2174;Parent=Msa0586790-mRNA-1
chr4_2 exon 8158168 8158220 8158168 ID=Msa0586790-mRNA-1:exon:2173;Parent=Msa0586790-mRNA-1
chr4_2 exon 8158401 8158512 8158401 ID=Msa0586790-mRNA-1:exon:2172;Parent=Msa0586790-mRNA-1
chr4_2 exon 8158666 8158732 8158666 ID=Msa0586790-mRNA-1:exon:2171;Parent=Msa0586790-mRNA-1
chr4_2 exon 8158998 8159088 8158998 ID=Msa0586790-mRNA-1:exon:2170;Parent=Msa0586790-mRNA-1
chr4_2 exon 8159908 8160811 8159908 ID=Msa0586790-mRNA-1:exon:2169;Parent=Msa0586790-mRNA-1
chr4_2 five_prime_UTR 8160740 8160811 8160740 ID=Msa0586790-mRNA-1:five_prime_utr;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8159908 8160739 8159908 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8158998 8159088 8158998 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8158666 8158732 8158666 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8158401 8158512 8158401 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8158168 8158220 8158168 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 CDS 8156106 8156285 8156106 ID=Msa0586790-mRNA-1:cds;Parent=Msa0586790-mRNA-1
chr4_2 three_prime_UTR 8155738 8156105 8155738 ID=Msa0586790-mRNA-1:three_prime_utr;Parent=Msa0586790-mRNA-1
Gene Sequence

>Msa0586790

ATGGCGCTTCTTCTCCGTCTCAAAACCACAAAACCCAAACCCTACTCTCCACCACTCCATCACCTCTTCTCCACCTCCAACTCCGGTGACAATGACGGTGGCGACAAAAAACCCTCCTTCTCCGAATCCTTACAACAAGTCAGAAGCTCATTCAAACAACAACCAACGTCAAACACAACACCTTCTCCTCTCTCTCCCTCGCAACAAAACGAATCCAAAGATGATATCTTGAGCAAAATCCAAAGCTTCCGTTCCAAAACCACCGCACCTGATTCCGATGATCTATTAACTCAGAAGAAGCCAATCTCGTTTCAGGATATGTATAGTAGAATGCATAATCGATCCAAAGATTCCGCTTCGGATACGTCGAAAACTACCATCGGTGGTGGTGGGGGTATTGGACTTGATGTGATTCGTGGAAGTTTAAATCAGCTGAAAAATTCGACGAATCAGACGCCGGTGACGCCGAGGTGGAGACCAAATATGTCAGCGGGGAATAGTGGGACGAGTTTGTTACCGGATTCGATGTTTGGGAAGGAGATAAGGGATAGGTTAGCCAAGGTGAATGATTCAGGGAGTTTTGGTACTGTTAGGTTATATATGCATGGTGAATTAGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAAGGAAAAGATTGGTTTTCGATTGCCGAGTTGAGTGAGAGGTTGAAGAAAGTGAGGGAAATGGATGAAATTGAAGCTAAGTCGAGTAAATCTAGTGCCGATACAAATAAAGTGTTCAACATTTTGAAAGATTCTGTTCAACATATCAAAGCTAAAGAAGCTGAGAAACCTAATAAAGCTTCATCGCAGAGAATTGATATGTTGTCCCTGATTGGTGGAACTCCAAGCTACTTGTCAAAGCCTCCTAAAGAGCATCTTGTTGAAAAGGCAAGCATCCTCATGATGAAATTCATCAAGTTATTGTCCATCTCTTGCTATTTGTTGATTGCTTTGGTCATTTCCTACTTTCACCCAGATAACATGTCCTCTGCTGAAAAATTGAAAATTGAGCTGACAAAGGTTAGAGATGAATTTAAGATGTCCGAGTCAGATTGTGGCTCTGCTCGTGTTCAAGTTGCGACACTGACAACCAAGATTAAGCATCTATCATCAGTTCTACACAAGAAGGATGTGCATTCTCGGAAAGGTCTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGCTGAAATACCTCAGAAGAACCGACTGGGATTCCTATTGTTTTGTTCTCTCTAAGTTAGGTCTACGTGATAATCCAGAATATACTTATAAAGCCCGGACTGGTAAATCGGGTGACGTAGCCAATTAA

Protein sequence

>Msa0586790

MALLLRLKTTKPKPYSPPLHHLFSTSNSGDNDGGDKKPSFSESLQQVRSSFKQQPTSNTTPSPLSPSQQNESKDDILSKIQSFRSKTTAPDSDDLLTQKKPISFQDMYSRMHNRSKDSASDTSKTTIGGGGGIGLDVIRGSLNQLKNSTNQTPVTPRWRPNMSAGNSGTSLLPDSMFGKEIRDRLAKVNDSGSFGTVRLYMHGELGEKLKKLRPQVKGKDWFSIAELSERLKKVREMDEIEAKSSKSSADTNKVFNILKDSVQHIKAKEAEKPNKASSQRIDMLSLIGGTPSYLSKPPKEHLVEKASILMMKFIKLLSISCYLLIALVISYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHLSSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVLSKLGLRDNPEYTYKARTGKSGDVAN*