Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664750 | XP_003604299.2 | 87.778 | 450 | 22 | 5 | 1 | 444 | 1 | 423 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664750 | sp|B7IFB5|RS15_THEAB | 54.667 | 75 | 32 | 1 | 353 | 425 | 9 | 83 | 3.66e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664750 | G7JFN7 | 87.778 | 450 | 22 | 5 | 1 | 444 | 1 | 423 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0664750 | 0.854416 | 1.248627e-61 | -8.615850e-47 |
| Msa0021220 | Msa0664750 | 0.807108 | 5.938751e-50 | -8.615850e-47 |
| Msa0025720 | Msa0664750 | 0.810853 | 9.373069e-51 | -8.615850e-47 |
| Msa0030200 | Msa0664750 | 0.810206 | 1.293330e-50 | -8.615850e-47 |
| Msa0037770 | Msa0664750 | 0.828021 | 1.133268e-54 | -8.615850e-47 |
| Msa0047160 | Msa0664750 | 0.807296 | 5.417955e-50 | -8.615850e-47 |
| Msa0059040 | Msa0664750 | 0.840036 | 1.107053e-57 | -8.615850e-47 |
| Msa0059110 | Msa0664750 | 0.845815 | 3.209761e-59 | -8.615850e-47 |
| Msa0070700 | Msa0664750 | 0.821195 | 4.594861e-53 | -8.615850e-47 |
| Msa0072420 | Msa0664750 | 0.806563 | 7.743025e-50 | -8.615850e-47 |
| Msa0090520 | Msa0664750 | 0.805169 | 1.519592e-49 | -8.615850e-47 |
| Msa0091560 | Msa0664750 | 0.806055 | 9.905086e-50 | -8.615850e-47 |
| Msa0094470 | Msa0664750 | 0.806111 | 9.640621e-50 | -8.615850e-47 |
| Msa0101270 | Msa0664750 | 0.806818 | 6.839829e-50 | -8.615850e-47 |
| Msa0105370 | Msa0664750 | 0.853013 | 3.162204e-61 | -8.615850e-47 |
| Msa0106620 | Msa0664750 | 0.816058 | 6.726377e-52 | -8.615850e-47 |
| Msa0106710 | Msa0664750 | 0.812622 | 3.864922e-51 | -8.615850e-47 |
| Msa0115130 | Msa0664750 | 0.822723 | 2.033275e-53 | -8.615850e-47 |
| Msa0115400 | Msa0664750 | 0.835582 | 1.543322e-56 | -8.615850e-47 |
| Msa0118590 | Msa0664750 | 0.825678 | 4.112155e-54 | -8.615850e-47 |
| Msa0604530 | Msa0664750 | 0.824434 | 8.086944e-54 | -8.615850e-47 |
| Msa0608500 | Msa0664750 | 0.814673 | 1.366946e-51 | -8.615850e-47 |
| Msa0625720 | Msa0664750 | 0.814928 | 1.200086e-51 | -8.615850e-47 |
| Msa0626630 | Msa0664750 | 0.988676 | 5.801358e-175 | -8.615850e-47 |
| Msa0628410 | Msa0664750 | 0.808919 | 2.444471e-50 | -8.615850e-47 |
| Msa0628420 | Msa0664750 | 0.807599 | 4.672057e-50 | -8.615850e-47 |
| Msa0634890 | Msa0664750 | 0.801483 | 8.814232e-49 | -8.615850e-47 |
| Msa0645620 | Msa0664750 | 0.813284 | 2.766607e-51 | -8.615850e-47 |
| Msa0648780 | Msa0664750 | 0.816472 | 5.434027e-52 | -8.615850e-47 |
| Msa0649020 | Msa0664750 | 0.811287 | 7.549138e-51 | -8.615850e-47 |
| Msa0649050 | Msa0664750 | 0.817512 | 3.173950e-52 | -8.615850e-47 |
| Msa0658590 | Msa0664750 | 0.841662 | 4.147904e-58 | -8.615850e-47 |
| Msa0660040 | Msa0664750 | 0.806128 | 9.561821e-50 | -8.615850e-47 |
| Msa0663390 | Msa0664750 | 0.813783 | 2.149098e-51 | -8.615850e-47 |
| Msa0664750 | Msa0669520 | 0.802400 | 5.712085e-49 | -8.615850e-47 |
| Msa0664750 | Msa0685200 | 0.819438 | 1.161424e-52 | -8.615850e-47 |
| Msa0664750 | Msa0689260 | 0.830637 | 2.625021e-55 | -8.615850e-47 |
| Msa0664750 | Msa0691290 | 0.810745 | 9.894100e-51 | -8.615850e-47 |
| Msa0664750 | Msa0691530 | 0.820782 | 5.717480e-53 | -8.615850e-47 |
| Msa0664750 | Msa0698800 | 0.833899 | 4.090486e-56 | -8.615850e-47 |
| Msa0664750 | Msa0707250 | 0.815936 | 7.161378e-52 | -8.615850e-47 |
| Msa0664750 | Msa0711780 | 0.801493 | 8.772424e-49 | -8.615850e-47 |
| Msa0664750 | Msa0763330 | 0.800447 | 1.435400e-48 | -8.615850e-47 |
| Msa0664750 | Msa0790400 | 0.821783 | 3.360225e-53 | -8.615850e-47 |
| Msa0664750 | Msa0832120 | 0.815770 | 7.796938e-52 | -8.615850e-47 |
| Msa0664750 | Msa0881290 | 0.821045 | 4.974285e-53 | -8.615850e-47 |
| Msa0664750 | Msa0894400 | 0.816338 | 5.821100e-52 | -8.615850e-47 |
| Msa0664750 | Msa0921000 | 0.813236 | 2.834367e-51 | -8.615850e-47 |
| Msa0664750 | Msa0933760 | 0.809123 | 2.210938e-50 | -8.615850e-47 |
| Msa0664750 | Msa0934140 | 0.845166 | 4.810229e-59 | -8.615850e-47 |
| Msa0664750 | Msa0958000 | 0.819184 | 1.327251e-52 | -8.615850e-47 |
| Msa0664750 | Msa0989540 | 0.808540 | 2.945758e-50 | -8.615850e-47 |
| Msa0664750 | Msa1006840 | 0.818938 | 1.509456e-52 | -8.615850e-47 |
| Msa0664750 | Msa1012740 | 0.832919 | 7.180444e-56 | -8.615850e-47 |
| Msa0664750 | Msa1029070 | 0.807952 | 3.931507e-50 | -8.615850e-47 |
| Msa0664750 | Msa1081930 | 0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa0664750 | Msa1083610 | 0.820540 | 6.499174e-53 | -8.615850e-47 |
| Msa0664750 | Msa1089450 | 0.805487 | 1.303701e-49 | -8.615850e-47 |
| Msa0664750 | Msa1123770 | 0.849215 | 3.729989e-60 | -8.615850e-47 |
| Msa0664750 | Msa1126830 | 0.825257 | 5.174326e-54 | -8.615850e-47 |
| Msa0664750 | Msa1127590 | 0.810226 | 1.280497e-50 | -8.615850e-47 |
| Msa0664750 | Msa1128600 | 0.848384 | 6.343394e-60 | -8.615850e-47 |
| Msa0664750 | Msa1132480 | 0.833444 | 5.313494e-56 | -8.615850e-47 |
| Msa0664750 | Msa1135890 | 0.801076 | 1.067711e-48 | -8.615850e-47 |
| Msa0664750 | Msa1145810 | 0.810874 | 9.279405e-51 | -8.615850e-47 |
| Msa0664750 | Msa1148910 | 0.828472 | 8.821560e-55 | -8.615850e-47 |
| Msa0664750 | Msa1153060 | 0.834503 | 2.887353e-56 | -8.615850e-47 |
| Msa0664750 | Msa1155170 | -0.824918 | 6.221435e-54 | -8.615850e-47 |
| Msa0664750 | Msa1160590 | 0.819887 | 9.170243e-53 | -8.615850e-47 |
| Msa0664750 | Msa1165780 | 0.802095 | 6.599765e-49 | -8.615850e-47 |
| Msa0664750 | Msa1165940 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
| Msa0664750 | Msa1169910 | 0.848825 | 4.788496e-60 | -8.615850e-47 |
| Msa0664750 | Msa1174780 | 0.814864 | 1.240098e-51 | -8.615850e-47 |
| Msa0664750 | Msa1181910 | 0.811039 | 8.546516e-51 | -8.615850e-47 |
| Msa0664750 | Msa1208880 | 0.820360 | 7.147715e-53 | -8.615850e-47 |
| Msa0664750 | Msa1209200 | 0.858156 | 9.993258e-63 | -8.615850e-47 |
| Msa0664750 | Msa1209260 | 0.801074 | 1.069104e-48 | -8.615850e-47 |
| Msa0664750 | Msa1218450 | 0.813448 | 2.546018e-51 | -8.615850e-47 |
| Msa0664750 | Msa1225860 | -0.844257 | 8.456969e-59 | -8.615850e-47 |
| Msa0664750 | Msa1226470 | 0.846530 | 2.050278e-59 | -8.615850e-47 |
| Msa0664750 | Msa1245930 | 0.827048 | 1.940309e-54 | -8.615850e-47 |
| Msa0664750 | Msa1259060 | 0.832627 | 8.486130e-56 | -8.615850e-47 |
| Msa0664750 | Msa1262890 | 0.803806 | 2.924610e-49 | -8.615850e-47 |
| Msa0664750 | Msa1264210 | 0.824745 | 6.832609e-54 | -8.615850e-47 |
| Msa0664750 | Msa1265630 | 0.812990 | 3.210631e-51 | -8.615850e-47 |
| Msa0664750 | Msa1275680 | 0.814908 | 1.212499e-51 | -8.615850e-47 |
| Msa0664750 | Msa1302380 | 0.824907 | 6.259604e-54 | -8.615850e-47 |
| Msa0664750 | Msa1303070 | 0.815090 | 1.104484e-51 | -8.615850e-47 |
| Msa0664750 | Msa1332590 | 0.847360 | 1.214562e-59 | -8.615850e-47 |
| Msa0664750 | Msa1340200 | 0.801641 | 8.181930e-49 | -8.615850e-47 |
| Msa0664750 | Msa1351540 | 0.815582 | 8.585163e-52 | -8.615850e-47 |
| Msa0664750 | Msa1358250 | 0.827475 | 1.533109e-54 | -8.615850e-47 |
| Msa0664750 | Msa1360980 | 0.811968 | 5.368307e-51 | -8.615850e-47 |
| Msa0664750 | Msa1370450 | 0.826936 | 2.063839e-54 | -8.615850e-47 |
| Msa0664750 | Msa1374060 | 0.838792 | 2.330251e-57 | -8.615850e-47 |
| Msa0664750 | Msa1381350 | 0.850518 | 1.612880e-60 | -8.615850e-47 |
| Msa0664750 | Msa1382560 | 0.837284 | 5.691073e-57 | -8.615850e-47 |
| Msa0664750 | Msa1383960 | 0.827179 | 1.805193e-54 | -8.615850e-47 |
| Msa0664750 | Msa1385720 | 0.851451 | 8.801019e-61 | -8.615850e-47 |
| Msa0664750 | Msa1392780 | 0.819742 | 9.898007e-53 | -8.615850e-47 |
| Msa0664750 | Msa1394290 | 0.812974 | 3.236127e-51 | -8.615850e-47 |
| Msa0664750 | Msa1400580 | 0.833720 | 4.534114e-56 | -8.615850e-47 |
| Msa0664750 | Msa1411950 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0664750 | Msa1411970 | 0.857927 | 1.169134e-62 | -8.615850e-47 |
| Msa0664750 | Msa1413380 | 0.800186 | 1.621982e-48 | -8.615850e-47 |
| Msa0664750 | Msa1413620 | 0.826240 | 3.023411e-54 | -8.615850e-47 |
| Msa0664750 | Msa1419870 | 0.840553 | 8.115415e-58 | -8.615850e-47 |
| Msa0664750 | Msa1434090 | 0.861616 | 9.053109e-64 | -8.615850e-47 |
| Msa0664750 | Msa1434950 | 0.930162 | 2.446314e-93 | -8.615850e-47 |
| Msa0664750 | Msa1440310 | 0.808336 | 3.256426e-50 | -8.615850e-47 |
| Msa0664750 | Msa1443300 | 0.834939 | 2.241948e-56 | -8.615850e-47 |
| Msa0664750 | Msa1457920 | 0.819287 | 1.256898e-52 | -8.615850e-47 |
| Msa0120880 | Msa0664750 | 0.802629 | 5.122597e-49 | -8.615850e-47 |
| Msa0127020 | Msa0664750 | 0.810055 | 1.394265e-50 | -8.615850e-47 |
| Msa0137990 | Msa0664750 | 0.810373 | 1.190260e-50 | -8.615850e-47 |
| Msa0140770 | Msa0664750 | -0.800821 | 1.204172e-48 | -8.615850e-47 |
| Msa0141660 | Msa0664750 | 0.805414 | 1.350487e-49 | -8.615850e-47 |
| Msa0144370 | Msa0664750 | 0.819313 | 1.240309e-52 | -8.615850e-47 |
| Msa0146280 | Msa0664750 | 0.831513 | 1.599866e-55 | -8.615850e-47 |
| Msa0169280 | Msa0664750 | 0.809157 | 2.174044e-50 | -8.615850e-47 |
| Msa0170200 | Msa0664750 | 0.807744 | 4.352503e-50 | -8.615850e-47 |
| Msa0179190 | Msa0664750 | 0.821262 | 4.434127e-53 | -8.615850e-47 |
| Msa0188350 | Msa0664750 | 0.803908 | 2.784983e-49 | -8.615850e-47 |
| Msa0188690 | Msa0664750 | 0.832442 | 9.432171e-56 | -8.615850e-47 |
| Msa0189300 | Msa0664750 | 0.820700 | 5.973233e-53 | -8.615850e-47 |
| Msa0189700 | Msa0664750 | 0.822998 | 1.754284e-53 | -8.615850e-47 |
| Msa0202410 | Msa0664750 | 0.815383 | 9.511098e-52 | -8.615850e-47 |
| Msa0204960 | Msa0664750 | 0.807799 | 4.236106e-50 | -8.615850e-47 |
| Msa0229170 | Msa0664750 | 0.806644 | 7.440839e-50 | -8.615850e-47 |
| Msa0232010 | Msa0664750 | 0.827828 | 1.260672e-54 | -8.615850e-47 |
| Msa0232080 | Msa0664750 | 0.829153 | 6.035039e-55 | -8.615850e-47 |
| Msa0378970 | Msa0664750 | 0.808178 | 3.517997e-50 | -8.615850e-47 |
| Msa0388700 | Msa0664750 | 0.822734 | 2.021789e-53 | -8.615850e-47 |
| Msa0403500 | Msa0664750 | 0.818461 | 1.937005e-52 | -8.615850e-47 |
| Msa0411430 | Msa0664750 | 0.802805 | 4.713570e-49 | -8.615850e-47 |
| Msa0437020 | Msa0664750 | 0.840267 | 9.638548e-58 | -8.615850e-47 |
| Msa0450400 | Msa0664750 | -0.813986 | 1.938943e-51 | -8.615850e-47 |
| Msa0481030 | Msa0664750 | 0.800046 | 1.731701e-48 | -8.615850e-47 |
| Msa0481530 | Msa0664750 | 0.818582 | 1.818649e-52 | -8.615850e-47 |
| Msa0482130 | Msa0664750 | 0.810817 | 9.543846e-51 | -8.615850e-47 |
| Msa0240900 | Msa0664750 | 0.824175 | 9.307512e-54 | -8.615850e-47 |
| Msa0249580 | Msa0664750 | 0.817071 | 3.987893e-52 | -8.615850e-47 |
| Msa0258390 | Msa0664750 | 0.846326 | 2.330035e-59 | -8.615850e-47 |
| Msa0261170 | Msa0664750 | 0.839525 | 1.504148e-57 | -8.615850e-47 |
| Msa0270210 | Msa0664750 | 0.814532 | 1.468319e-51 | -8.615850e-47 |
| Msa0271530 | Msa0664750 | 0.800375 | 1.484703e-48 | -8.615850e-47 |
| Msa0274980 | Msa0664750 | 0.801497 | 8.756797e-49 | -8.615850e-47 |
| Msa0281530 | Msa0664750 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0288080 | Msa0664750 | 0.813597 | 2.362058e-51 | -8.615850e-47 |
| Msa0295460 | Msa0664750 | -0.800513 | 1.391145e-48 | -8.615850e-47 |
| Msa0297610 | Msa0664750 | 0.817268 | 3.601497e-52 | -8.615850e-47 |
| Msa0307850 | Msa0664750 | 0.833263 | 5.896442e-56 | -8.615850e-47 |
| Msa0315690 | Msa0664750 | 0.803948 | 2.732117e-49 | -8.615850e-47 |
| Msa0317970 | Msa0664750 | 0.810877 | 9.261946e-51 | -8.615850e-47 |
| Msa0321690 | Msa0664750 | 0.805088 | 1.580548e-49 | -8.615850e-47 |
| Msa0322240 | Msa0664750 | 0.831334 | 1.771045e-55 | -8.615850e-47 |
| Msa0322900 | Msa0664750 | 0.803231 | 3.847190e-49 | -8.615850e-47 |
| Msa0326480 | Msa0664750 | 0.825582 | 4.334385e-54 | -8.615850e-47 |
| Msa0335730 | Msa0664750 | 0.828797 | 7.361219e-55 | -8.615850e-47 |
| Msa0341690 | Msa0664750 | 0.816661 | 4.929540e-52 | -8.615850e-47 |
| Msa0357900 | Msa0664750 | 0.856591 | 2.901504e-62 | -8.615850e-47 |
| Msa0485510 | Msa0664750 | 0.804801 | 1.814839e-49 | -8.615850e-47 |
| Msa0500470 | Msa0664750 | 0.802517 | 5.403274e-49 | -8.615850e-47 |
| Msa0518030 | Msa0664750 | 0.809891 | 1.511979e-50 | -8.615850e-47 |
| Msa0529890 | Msa0664750 | 0.816784 | 4.625197e-52 | -8.615850e-47 |
| Msa0531230 | Msa0664750 | 0.848116 | 7.524056e-60 | -8.615850e-47 |
| Msa0531250 | Msa0664750 | 0.816264 | 6.048177e-52 | -8.615850e-47 |
| Msa0531650 | Msa0664750 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0539410 | Msa0664750 | 0.817313 | 3.518651e-52 | -8.615850e-47 |
| Msa0542490 | Msa0664750 | 0.848710 | 5.152149e-60 | -8.615850e-47 |
| Msa0554290 | Msa0664750 | 0.817640 | 2.969384e-52 | -8.615850e-47 |
| Msa0554920 | Msa0664750 | 0.819537 | 1.102798e-52 | -8.615850e-47 |
| Msa0556060 | Msa0664750 | 0.813137 | 2.980529e-51 | -8.615850e-47 |
| Msa0572840 | Msa0664750 | 0.809072 | 2.266442e-50 | -8.615850e-47 |
| Msa0573180 | Msa0664750 | 0.807112 | 5.927121e-50 | -8.615850e-47 |
| Msa0578140 | Msa0664750 | 0.965228 | 2.474314e-124 | -8.615850e-47 |
| Msa0580700 | Msa0664750 | 0.801772 | 7.691853e-49 | -8.615850e-47 |
| Msa0581110 | Msa0664750 | 0.829792 | 4.221942e-55 | -8.615850e-47 |
| Msa0581280 | Msa0664750 | 0.858515 | 7.812337e-63 | -8.615850e-47 |
| Msa0581470 | Msa0664750 | 0.803967 | 2.707383e-49 | -8.615850e-47 |
| Msa0583360 | Msa0664750 | -0.844977 | 5.410487e-59 | -8.615850e-47 |
| Msa0585560 | Msa0664750 | 0.822457 | 2.345005e-53 | -8.615850e-47 |
| Msa0586790 | Msa0664750 | 0.827486 | 1.523613e-54 | -8.615850e-47 |
| Msa0588090 | Msa0664750 | 0.820530 | 6.533881e-53 | -8.615850e-47 |
| Msa0588360 | Msa0664750 | 0.804809 | 1.807160e-49 | -8.615850e-47 |
| Msa0601150 | Msa0664750 | 0.837931 | 3.884660e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664750 | MtrunA17_Chr4g0002731 | 87.778 | 450 | 22 | 5 | 1 | 444 | 1 | 423 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664750 | AT1G80620.1 | 39.073 | 453 | 187 | 14 | 16 | 432 | 15 | 414 | 3.85e-75 | 241 |
| Msa0664750 | AT1G15810.1 | 54.936 | 233 | 70 | 4 | 199 | 430 | 219 | 417 | 5.19e-75 | 241 |
Find 135 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTTAGGTTTAATTTA+TGG | 0.101635 | 4_4:-3868666 | Msa0664750:three_prime_UTR |
| AATATTTCTTGTATCATAAT+TGG | 0.161540 | 4_4:-3868581 | Msa0664750:three_prime_UTR |
| GAAGAAGCCAATCTCGTTTC+AGG | 0.197152 | 4_4:-3873233 | Msa0664750:CDS |
| TCAGCAGAGGACATGTTATC+TGG | 0.221149 | 4_4:+3871290 | None:intergenic |
| TATGTTGGGGTTTATTTAAT+TGG | 0.228847 | 4_4:+3868899 | None:intergenic |
| TTTGCTCAAGATATCATCTT+TGG | 0.250670 | 4_4:+3873312 | None:intergenic |
| GGAATCAGGTGCGGTGGTTT+TGG | 0.276997 | 4_4:+3873273 | None:intergenic |
| CGGGCTTTATAAGTATATTC+TGG | 0.291890 | 4_4:+3868945 | None:intergenic |
| TTAGCCAAGGTGAATGATTC+AGG | 0.297727 | 4_4:-3872974 | Msa0664750:CDS |
| GTGAATGATTCAGGGAGTTT+TGG | 0.301942 | 4_4:-3872965 | Msa0664750:CDS |
| CGTATCCGAAGCGGAATCTT+TGG | 0.307010 | 4_4:+3873183 | None:intergenic |
| TTGCTATTTGTTGATTGCTT+TGG | 0.309603 | 4_4:-3871483 | Msa0664750:CDS |
| TTATATATGCATGGTGAATT+AGG | 0.318193 | 4_4:-3872932 | Msa0664750:CDS |
| TACTAACATGAAGCTTTATT+AGG | 0.327657 | 4_4:+3872710 | None:intergenic |
| TTGTTACCGGATTCGATGTT+TGG | 0.341309 | 4_4:-3873016 | Msa0664750:CDS |
| AGTGGTGGAGAGTAGGGTTT+GGG | 0.342066 | 4_4:+3873493 | None:intergenic |
| ATTCTTCAGCCATGGATATA+TGG | 0.342367 | 4_4:+3868761 | None:intergenic |
| CGATGTTTGGGAAGGAGATA+AGG | 0.345042 | 4_4:-3873003 | Msa0664750:CDS |
| ACACTTGTAGAAGCAAAATA+TGG | 0.357125 | 4_4:+3868788 | None:intergenic |
| AGCTTGGAGTTCCACCAATC+AGG | 0.379248 | 4_4:+3871853 | None:intergenic |
| TCTTGTATCATAATTGGAAA+TGG | 0.387100 | 4_4:-3868575 | Msa0664750:three_prime_UTR |
| TAAAGCCCGGACTGGTAAAT+CGG | 0.389131 | 4_4:-3868931 | Msa0664750:CDS |
| TCTGACTTGTTGTAAGGATT+CGG | 0.391613 | 4_4:+3873405 | None:intergenic |
| AATATGTCAGCGGGGAATAG+TGG | 0.398052 | 4_4:-3873046 | Msa0664750:CDS |
| TGATGGAGTGGTGGAGAGTA+GGG | 0.398977 | 4_4:+3873487 | None:intergenic |
| CTATTCCCCGCTGACATATT+CGG | 0.403136 | 4_4:+3873049 | None:intergenic |
| TAGTGGGACGAGTTTGTTAC+CGG | 0.405301 | 4_4:-3873029 | Msa0664750:CDS |
| GCTTAGGAAATAATTCTGTT+TGG | 0.411342 | 4_4:-3868543 | None:intergenic |
| GAGTGGTGGAGAGTAGGGTT+TGG | 0.415098 | 4_4:+3873492 | None:intergenic |
| GTGATGGAGTGGTGGAGAGT+AGG | 0.417770 | 4_4:+3873486 | None:intergenic |
| TGCTTTAGGATGTGCATTCT+CGG | 0.419325 | 4_4:-3869079 | Msa0664750:intron |
| TGTGGCTCTGCTCGTGTTCA+AGG | 0.419529 | 4_4:-3871209 | Msa0664750:intron |
| TAAAGAGCATCTTGTTGAAA+AGG | 0.423407 | 4_4:-3871814 | Msa0664750:CDS |
| CTTAGAGAGAACAAAACAAT+AGG | 0.423531 | 4_4:+3868986 | None:intergenic |
| CCATAAATTAAACCTAAATC+AGG | 0.428382 | 4_4:+3868666 | None:intergenic |
| CTACAAAATAAACAATTGAT+TGG | 0.428999 | 4_4:+3868629 | None:intergenic |
| CTCAAGTGAAAGGAAAAGAT+TGG | 0.434328 | 4_4:-3872886 | Msa0664750:CDS |
| GTTAATAGATCATCGGAATC+AGG | 0.434445 | 4_4:+3873259 | None:intergenic |
| TGGAGGTGGAGAAGAGGTGA+TGG | 0.434925 | 4_4:+3873470 | None:intergenic |
| AAAACTACCATCGGTGGTGG+TGG | 0.439256 | 4_4:-3873157 | Msa0664750:CDS |
| GTTGAAGAAAGTGAGGGAAA+TGG | 0.440483 | 4_4:-3872837 | Msa0664750:CDS |
| TGTTACCGGATTCGATGTTT+GGG | 0.445980 | 4_4:-3873015 | Msa0664750:CDS |
| ATTGACTAAGCTGCTTGAAC+TGG | 0.450433 | 4_4:+3868817 | None:intergenic |
| TGATGATAGATGCTTAATCT+TGG | 0.455799 | 4_4:+3870992 | None:intergenic |
| GATGTTTGGGAAGGAGATAA+GGG | 0.455958 | 4_4:-3873002 | Msa0664750:CDS |
| GGTCTCCACCTCGGCGTCAC+CGG | 0.457444 | 4_4:+3873070 | None:intergenic |
| CTCTTCTCCACCTCCAACTC+CGG | 0.457603 | 4_4:-3873463 | Msa0664750:CDS |
| GAAATGGATAAATGAAGCTT+AGG | 0.459164 | 4_4:-3868559 | Msa0664750:three_prime_UTR |
| ACCGTCATTGTCACCGGAGT+TGG | 0.459507 | 4_4:+3873450 | None:intergenic |
| GTTGAACACTTTATTTGTAT+CGG | 0.460097 | 4_4:+3872781 | None:intergenic |
| AACTACCATCGGTGGTGGTG+GGG | 0.461512 | 4_4:-3873155 | Msa0664750:CDS |
| AGCGCCATTGTTGGTGGTGG+TGG | 0.462114 | 4_4:+3873541 | None:intergenic |
| GGAGGCTTTGACAAGTAGCT+TGG | 0.462551 | 4_4:+3871837 | None:intergenic |
| ATTGATATGTTGTCCCTGAT+TGG | 0.468754 | 4_4:-3871867 | Msa0664750:CDS |
| TACATATCCTGAAACGAGAT+TGG | 0.469151 | 4_4:+3873226 | None:intergenic |
| ACTACCATCGGTGGTGGTGG+GGG | 0.471057 | 4_4:-3873154 | Msa0664750:CDS |
| TGAGCTTCTGACTTGTTGTA+AGG | 0.477275 | 4_4:+3873399 | None:intergenic |
| CGGAGAAGAAGCGCCATTGT+TGG | 0.491513 | 4_4:+3873532 | None:intergenic |
| AAACTACCATCGGTGGTGGT+GGG | 0.493683 | 4_4:-3873156 | Msa0664750:CDS |
| TGCGAGGGAGAGAGAGGAGA+AGG | 0.494280 | 4_4:+3873346 | None:intergenic |
| TCCTTCCCAAACATCGAATC+CGG | 0.494755 | 4_4:+3873010 | None:intergenic |
| GTCGCCACCGTCATTGTCAC+CGG | 0.497517 | 4_4:+3873444 | None:intergenic |
| AGTTCAAGCAGCTTAGTCAA+TGG | 0.497786 | 4_4:-3868815 | Msa0664750:three_prime_UTR |
| GTGAGAGGTTGAAGAAAGTG+AGG | 0.507809 | 4_4:-3872844 | Msa0664750:CDS |
| GTCATTGTCACCGGAGTTGG+AGG | 0.510211 | 4_4:+3873453 | None:intergenic |
| CAGCAGAGGACATGTTATCT+GGG | 0.517850 | 4_4:+3871291 | None:intergenic |
| TTAGACTGGATAAAATCAGC+TGG | 0.522482 | 4_4:+3868852 | None:intergenic |
| ATTGTCACCGGAGTTGGAGG+TGG | 0.527310 | 4_4:+3873456 | None:intergenic |
| GGTGGTGGAGAAAGAGAAAG+AGG | 0.528464 | 4_4:+3873556 | None:intergenic |
| AAAGCCCGGACTGGTAAATC+GGG | 0.529645 | 4_4:-3868930 | Msa0664750:CDS |
| GTGGAGAAGAGGTGATGGAG+TGG | 0.532903 | 4_4:+3873475 | None:intergenic |
| ATATGTCAGCGGGGAATAGT+GGG | 0.534656 | 4_4:-3873045 | Msa0664750:CDS |
| TCAACAAGATGCTCTTTAGG+AGG | 0.535728 | 4_4:+3871819 | None:intergenic |
| GGCTAGTCAGACACTTAGAC+TGG | 0.536045 | 4_4:+3868838 | None:intergenic |
| TGGAGACCGAATATGTCAGC+GGG | 0.537439 | 4_4:-3873055 | Msa0664750:CDS |
| GAGAAGAGGTGATGGAGTGG+TGG | 0.540124 | 4_4:+3873478 | None:intergenic |
| AGAAGAAGCGCCATTGTTGG+TGG | 0.541690 | 4_4:+3873535 | None:intergenic |
| CTTCTGAGTTAATAGATCAT+CGG | 0.542609 | 4_4:+3873252 | None:intergenic |
| TAGGATGTGCATTCTCGGAA+AGG | 0.545917 | 4_4:-3869074 | Msa0664750:CDS |
| GCTTGGAGTTCCACCAATCA+GGG | 0.546915 | 4_4:+3871854 | None:intergenic |
| TTCTCCACCACCACCAACAA+TGG | 0.548692 | 4_4:-3873545 | Msa0664750:exon |
| TGTAAGGATTCGGAGAAGGA+GGG | 0.550289 | 4_4:+3873415 | None:intergenic |
| ATCATCAGTTCTACACAAGA+AGG | 0.554571 | 4_4:-3870976 | Msa0664750:intron |
| CTTCAACCTCTCACTCAACT+CGG | 0.554778 | 4_4:+3872853 | None:intergenic |
| GTCACCCGATTTACCAGTCC+GGG | 0.556020 | 4_4:+3868926 | None:intergenic |
| CGATTGCCGAGTTGAGTGAG+AGG | 0.557053 | 4_4:-3872859 | Msa0664750:CDS |
| TTGTAAGGATTCGGAGAAGG+AGG | 0.557469 | 4_4:+3873414 | None:intergenic |
| CGGAGTTGGAGGTGGAGAAG+AGG | 0.562478 | 4_4:+3873464 | None:intergenic |
| AGCAACACATTCTTCAGCCA+TGG | 0.562640 | 4_4:+3868753 | None:intergenic |
| ACCGGATTCGATGTTTGGGA+AGG | 0.563280 | 4_4:-3873011 | Msa0664750:CDS |
| TGATAGCAATGGTTCAAAAG+AGG | 0.564231 | 4_4:-3869049 | Msa0664750:CDS |
| TTGTTGTAAGGATTCGGAGA+AGG | 0.565751 | 4_4:+3873411 | None:intergenic |
| TAGCCAAGGTGAATGATTCA+GGG | 0.570378 | 4_4:-3872973 | Msa0664750:CDS |
| CGTCACCCGATTTACCAGTC+CGG | 0.571673 | 4_4:+3868925 | None:intergenic |
| GAAGGTGTTGTGTTTGACGT+TGG | 0.572394 | 4_4:+3873364 | None:intergenic |
| TCGATCCAAAGATTCCGCTT+CGG | 0.574006 | 4_4:-3873188 | Msa0664750:CDS |
| ATTGGACTTGATGTGATTCG+TGG | 0.579464 | 4_4:-3873130 | Msa0664750:CDS |
| AAGATGTCCGAGTCAGATTG+TGG | 0.579927 | 4_4:-3871227 | Msa0664750:CDS |
| CAGAATATACTTATAAAGCC+CGG | 0.580244 | 4_4:-3868944 | Msa0664750:CDS |
| TGGTGGAGAAAGAGAAAGAG+GGG | 0.580844 | 4_4:+3873558 | None:intergenic |
| TGAGAGGTTGAAGAAAGTGA+GGG | 0.583053 | 4_4:-3872843 | Msa0664750:CDS |
| GTGGTGGAGAAAGAGAAAGA+GGG | 0.584438 | 4_4:+3873557 | None:intergenic |
| ACTTGATGAATTTCATCATG+AGG | 0.585281 | 4_4:+3871519 | None:intergenic |
| TATACTTATAAAGCCCGGAC+TGG | 0.588412 | 4_4:-3868939 | Msa0664750:CDS |
| TTGGGAAGGAGATAAGGGAT+AGG | 0.591410 | 4_4:-3872997 | Msa0664750:CDS |
| AAATTGAGACCTCAAGTGAA+AGG | 0.593143 | 4_4:-3872896 | Msa0664750:CDS |
| AATCCCAGTCGGTTCTTCTG+AGG | 0.595536 | 4_4:+3869009 | None:intergenic |
| TCGAAAACTACCATCGGTGG+TGG | 0.596020 | 4_4:-3873160 | Msa0664750:CDS |
| AATACCTCAGAAGAACCGAC+TGG | 0.596907 | 4_4:-3869013 | Msa0664750:CDS |
| AATCAACAAATAGCAAGAGA+TGG | 0.599289 | 4_4:+3871490 | None:intergenic |
| AGTGTTGTTCCATATATCCA+TGG | 0.599971 | 4_4:-3868770 | Msa0664750:three_prime_UTR |
| GATAAGGGATAGGTTAGCCA+AGG | 0.602083 | 4_4:-3872987 | Msa0664750:CDS |
| AGAAGCGCCATTGTTGGTGG+TGG | 0.602122 | 4_4:+3873538 | None:intergenic |
| TCCAACTCCGGTGACAATGA+CGG | 0.604175 | 4_4:-3873451 | Msa0664750:CDS |
| GATATGTTGTCCCTGATTGG+TGG | 0.604709 | 4_4:-3871864 | Msa0664750:CDS |
| GACATATTCGGTCTCCACCT+CGG | 0.607216 | 4_4:+3873061 | None:intergenic |
| TAGACTGGATAAAATCAGCT+GGG | 0.619439 | 4_4:+3868853 | None:intergenic |
| AGACGCCGGTGACGCCGAGG+TGG | 0.621545 | 4_4:-3873075 | Msa0664750:CDS |
| AGCAGAGCCACAATCTGACT+CGG | 0.621918 | 4_4:+3871220 | None:intergenic |
| ATCATCGGAATCAGGTGCGG+TGG | 0.623646 | 4_4:+3873267 | None:intergenic |
| ACTCCCTGAATCATTCACCT+TGG | 0.637166 | 4_4:+3872970 | None:intergenic |
| ACTGTTAGGTTATATATGCA+TGG | 0.640796 | 4_4:-3872941 | Msa0664750:CDS |
| TCGGAAAGGTCTGATAGCAA+TGG | 0.642289 | 4_4:-3869060 | Msa0664750:CDS |
| ATCAGACGCCGGTGACGCCG+AGG | 0.642782 | 4_4:-3873078 | Msa0664750:CDS |
| GATACGTCGAAAACTACCAT+CGG | 0.667277 | 4_4:-3873166 | Msa0664750:CDS |
| TGATACAAGAAATATTACGA+TGG | 0.667765 | 4_4:+3868588 | None:intergenic |
| ATACCTCAGAAGAACCGACT+GGG | 0.671133 | 4_4:-3869012 | Msa0664750:CDS |
| TAGATCATCGGAATCAGGTG+CGG | 0.679666 | 4_4:+3873264 | None:intergenic |
| AAATTCGACGAATCAGACGC+CGG | 0.695623 | 4_4:-3873089 | Msa0664750:CDS |
| ACGTCGAAAACTACCATCGG+TGG | 0.701049 | 4_4:-3873163 | Msa0664750:CDS |
| GTGGAGACCGAATATGTCAG+CGG | 0.711187 | 4_4:-3873056 | Msa0664750:CDS |
| AAAACAATAGGAATCCCAGT+CGG | 0.725069 | 4_4:+3868998 | None:intergenic |
| AACTCCGGTGACAATGACGG+TGG | 0.731984 | 4_4:-3873448 | Msa0664750:CDS |
| TTACGATGGAAAAGACAACA+AGG | 0.736796 | 4_4:+3868602 | None:intergenic |
| GGAGACCGAATATGTCAGCG+GGG | 0.770843 | 4_4:-3873054 | Msa0664750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAATCTATTGTAGA+TGG | - | chr4_4:3870137-3870156 | Msa0664750:intron | 15.0% |
| !! | TATATGAAAAATATAAGTGA+TGG | - | chr4_4:3870232-3870251 | Msa0664750:intron | 15.0% |
| !! | AATATATTAATGTTTGACTA+TGG | + | chr4_4:3870565-3870584 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAATCTAGTATAA+CGG | - | chr4_4:3871363-3871382 | Msa0664750:intron | 15.0% |
| !!! | TTTTTGAATTTTAAGTTTGT+TGG | + | chr4_4:3872313-3872332 | None:intergenic | 15.0% |
| !!! | TCTATTTTTAATCATGTAAT+TGG | + | chr4_4:3872539-3872558 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAGTTTATGTT+GGG | + | chr4_4:3873261-3873280 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATTAGTTTATGT+TGG | + | chr4_4:3873262-3873281 | None:intergenic | 15.0% |
| !! | AATATTTCTTGTATCATAAT+TGG | - | chr4_4:3873562-3873581 | Msa0664750:five_prime_UTR | 15.0% |
| !! | TTTATCATTGATACTAGATA+AGG | - | chr4_4:3869730-3869749 | Msa0664750:intron | 20.0% |
| !! | ATGACCAAAATATATTTGTT+TGG | + | chr4_4:3869911-3869930 | None:intergenic | 20.0% |
| !!! | AACAAATATATTTTGGTCAT+AGG | - | chr4_4:3869911-3869930 | Msa0664750:intron | 20.0% |
| !!! | ACAAATATATTTTGGTCATA+GGG | - | chr4_4:3869912-3869931 | Msa0664750:intron | 20.0% |
| !!! | AGCATTTTAGATTAATTGAA+TGG | + | chr4_4:3870520-3870539 | None:intergenic | 20.0% |
| !! | TAATAGCTTAAAAAAAAGTG+GGG | + | chr4_4:3870601-3870620 | None:intergenic | 20.0% |
| !! | GTAATAGCTTAAAAAAAAGT+GGG | + | chr4_4:3870602-3870621 | None:intergenic | 20.0% |
| !! | TGTAATAGCTTAAAAAAAAG+TGG | + | chr4_4:3870603-3870622 | None:intergenic | 20.0% |
| !! | TGTTCGATATTAAATTTAGA+CGG | - | chr4_4:3870993-3871012 | Msa0664750:CDS | 20.0% |
| !! | TAAAGTATAGCAAACATATT+TGG | + | chr4_4:3871021-3871040 | None:intergenic | 20.0% |
| !!! | TACTAATTTTCTTTCATGAT+TGG | - | chr4_4:3871039-3871058 | Msa0664750:intron | 20.0% |
| !!! | AGTGTTTGGAATATATTAAT+AGG | - | chr4_4:3871066-3871085 | Msa0664750:intron | 20.0% |
| !! | AAAAAAATTAGTACTAGAGT+TGG | + | chr4_4:3871492-3871511 | None:intergenic | 20.0% |
| !! | GAATATTTATAAAGTTGTAC+AGG | + | chr4_4:3871680-3871699 | None:intergenic | 20.0% |
| !! | ACTTTATAAATATTCTGCAA+AGG | - | chr4_4:3871685-3871704 | Msa0664750:intron | 20.0% |
| !! | CTGGTAAAGATTAAAAATAA+GGG | + | chr4_4:3871878-3871897 | None:intergenic | 20.0% |
| !! | ACTGGTAAAGATTAAAAATA+AGG | + | chr4_4:3871879-3871898 | None:intergenic | 20.0% |
| !!! | GAAAATTGTTTTAGTTAACA+TGG | + | chr4_4:3872088-3872107 | None:intergenic | 20.0% |
| !!! | TGTTAACTAAAACAATTTTC+AGG | - | chr4_4:3872088-3872107 | Msa0664750:intron | 20.0% |
| !! | TCATAAAAATCATAGCTTAA+AGG | - | chr4_4:3872194-3872213 | Msa0664750:intron | 20.0% |
| !!! | ACAATATTCTTTTACTAAGA+TGG | + | chr4_4:3872365-3872384 | None:intergenic | 20.0% |
| !! | TCTTAGTAAAAGAATATTGT+TGG | - | chr4_4:3872365-3872384 | Msa0664750:intron | 20.0% |
| !! | TTATGAGAAATGAAATACTA+GGG | + | chr4_4:3872622-3872641 | None:intergenic | 20.0% |
| !! | TGAACATAAGAATTTAATCA+GGG | + | chr4_4:3872755-3872774 | None:intergenic | 20.0% |
| !! | ATGAACATAAGAATTTAATC+AGG | + | chr4_4:3872756-3872775 | None:intergenic | 20.0% |
| !! | CCAATTCAAAATTATATTGA+AGG | + | chr4_4:3872820-3872839 | None:intergenic | 20.0% |
| !!! | CCTTCAATATAATTTTGAAT+TGG | - | chr4_4:3872817-3872836 | Msa0664750:CDS | 20.0% |
| !!! | TTTTCAATTAGTTTATGTTG+GGG | + | chr4_4:3873260-3873279 | None:intergenic | 20.0% |
| !! | TCAGGCAAAAATAATATAAT+GGG | + | chr4_4:3873462-3873481 | None:intergenic | 20.0% |
| !! | ATCAGGCAAAAATAATATAA+TGG | + | chr4_4:3873463-3873482 | None:intergenic | 20.0% |
| !!! | ATATTATTTTTGCCTGATTT+AGG | - | chr4_4:3873465-3873484 | Msa0664750:CDS | 20.0% |
| !! | CTACAAAATAAACAATTGAT+TGG | + | chr4_4:3873517-3873536 | None:intergenic | 20.0% |
| !!! | CAATCAATTGTTTATTTTGT+AGG | - | chr4_4:3873515-3873534 | Msa0664750:CDS | 20.0% |
| ! | TTATATATGCATGGTGAATT+AGG | - | chr4_4:3869211-3869230 | Msa0664750:intron | 25.0% |
| !! | GTTGAACACTTTATTTGTAT+CGG | + | chr4_4:3869365-3869384 | None:intergenic | 25.0% |
| !!! | TACTAACATGAAGCTTTATT+AGG | + | chr4_4:3869436-3869455 | None:intergenic | 25.0% |
| ! | ATCATCGTATCATAACTAAA+AGG | + | chr4_4:3869513-3869532 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCAATACATGTTT+AGG | - | chr4_4:3869652-3869671 | Msa0664750:intron | 25.0% |
| ! | CTATGTTTGGTAAAAAATAG+TGG | - | chr4_4:3869675-3869694 | Msa0664750:intron | 25.0% |
| !!! | CTCATAGTTGATAAATTAGT+GGG | - | chr4_4:3869775-3869794 | Msa0664750:intron | 25.0% |
| !!! | ACAAGTTTAAGCTTTTTTAC+TGG | + | chr4_4:3869874-3869893 | None:intergenic | 25.0% |
| !! | TGTGCCAAACAAATATATTT+TGG | - | chr4_4:3869904-3869923 | Msa0664750:intron | 25.0% |
| !!! | CAAATATATTTTGGTCATAG+GGG | - | chr4_4:3869913-3869932 | Msa0664750:intron | 25.0% |
| ! | ATTGACAACACTTTATACTA+AGG | + | chr4_4:3869988-3870007 | None:intergenic | 25.0% |
| !!! | AGTATAAAGTGTTGTCAATT+AGG | - | chr4_4:3869989-3870008 | Msa0664750:intron | 25.0% |
| !!! | GTATAAAGTGTTGTCAATTA+GGG | - | chr4_4:3869990-3870009 | Msa0664750:intron | 25.0% |
| !!! | TATAAAGTGTTGTCAATTAG+GGG | - | chr4_4:3869991-3870010 | Msa0664750:intron | 25.0% |
| ! | AATATAGAGTTATAAACCAC+AGG | + | chr4_4:3870475-3870494 | None:intergenic | 25.0% |
| ! | GGTTAATTCAAAATATCAAG+CGG | + | chr4_4:3870712-3870731 | None:intergenic | 25.0% |
| !!! | GGCACATTTTGTTTTTTTAA+TGG | - | chr4_4:3870773-3870792 | Msa0664750:intron | 25.0% |
| !!! | AATTTTCAATTTTTCAGCAG+AGG | + | chr4_4:3870869-3870888 | None:intergenic | 25.0% |
| ! | GTTCGATATTAAATTTAGAC+GGG | - | chr4_4:3870994-3871013 | Msa0664750:CDS | 25.0% |
| ! | AACATACAAATCTTCTATTG+AGG | + | chr4_4:3871261-3871280 | None:intergenic | 25.0% |
| ! | AACAATGTTTGTACATCAAA+TGG | + | chr4_4:3871287-3871306 | None:intergenic | 25.0% |
| !! | ATTTTACAGACTATGAAAAC+TGG | + | chr4_4:3871402-3871421 | None:intergenic | 25.0% |
| ! | TTTAATCTTTACCAGTTAAC+TGG | - | chr4_4:3871883-3871902 | Msa0664750:intron | 25.0% |
| ! | TTGCTACATAAACAATATGT+TGG | + | chr4_4:3872055-3872074 | None:intergenic | 25.0% |
| ! | TATCTCAGACAAATTAAGAT+GGG | - | chr4_4:3872119-3872138 | Msa0664750:intron | 25.0% |
| ! | ATTGGGTATTATTATGAAGA+TGG | - | chr4_4:3872143-3872162 | Msa0664750:intron | 25.0% |
| ! | TTGGGTATTATTATGAAGAT+GGG | - | chr4_4:3872144-3872163 | Msa0664750:intron | 25.0% |
| ! | TTATTGTTACTCATGTCTAT+GGG | + | chr4_4:3872252-3872271 | None:intergenic | 25.0% |
| !! | AAAGAATATTGTTGGTAGAT+TGG | - | chr4_4:3872373-3872392 | Msa0664750:intron | 25.0% |
| ! | AATATCATTCACATCGAAAT+AGG | - | chr4_4:3872510-3872529 | Msa0664750:intron | 25.0% |
| ! | TGATTAAAAATAGACTGACA+TGG | - | chr4_4:3872545-3872564 | Msa0664750:intron | 25.0% |
| ! | CTTATGAGAAATGAAATACT+AGG | + | chr4_4:3872623-3872642 | None:intergenic | 25.0% |
| ! | AAAATTACAACTTCCAACAT+AGG | + | chr4_4:3872665-3872684 | None:intergenic | 25.0% |
| ! | ATATAGCATAAATTGAAGCA+AGG | + | chr4_4:3872893-3872912 | None:intergenic | 25.0% |
| ! | TATGTTGGGGTTTATTTAAT+TGG | + | chr4_4:3873247-3873266 | None:intergenic | 25.0% |
| ! | TTCGTACAGAAAAAAGAAAA+TGG | + | chr4_4:3873416-3873435 | None:intergenic | 25.0% |
| ! | CCATAAATTAAACCTAAATC+AGG | + | chr4_4:3873480-3873499 | None:intergenic | 25.0% |
| !! | CCTGATTTAGGTTTAATTTA+TGG | - | chr4_4:3873477-3873496 | Msa0664750:CDS | 25.0% |
| ! | TGATACAAGAAATATTACGA+TGG | + | chr4_4:3873558-3873577 | None:intergenic | 25.0% |
| ! | TCTTGTATCATAATTGGAAA+TGG | - | chr4_4:3873568-3873587 | Msa0664750:five_prime_UTR | 25.0% |
| TTTGCTCAAGATATCATCTT+TGG | + | chr4_4:3868834-3868853 | None:intergenic | 30.0% | |
| CTTCTGAGTTAATAGATCAT+CGG | + | chr4_4:3868894-3868913 | None:intergenic | 30.0% | |
| ACTGTTAGGTTATATATGCA+TGG | - | chr4_4:3869202-3869221 | Msa0664750:intron | 30.0% | |
| TCGGATATACTAACTCAAAA+GGG | + | chr4_4:3869582-3869601 | None:intergenic | 30.0% | |
| ATCGGATATACTAACTCAAA+AGG | + | chr4_4:3869583-3869602 | None:intergenic | 30.0% | |
| ATACATGTTTAGGCTATGTT+TGG | - | chr4_4:3869662-3869681 | Msa0664750:intron | 30.0% | |
| ! | GTTTGGTAAAAAATAGTGGA+TGG | - | chr4_4:3869679-3869698 | Msa0664750:intron | 30.0% |
| !! | GCTCATAGTTGATAAATTAG+TGG | - | chr4_4:3869774-3869793 | Msa0664750:intron | 30.0% |
| !! | TGATAAATTAGTGGGTTGAA+TGG | - | chr4_4:3869783-3869802 | Msa0664750:intron | 30.0% |
| !! | GATAAATTAGTGGGTTGAAT+GGG | - | chr4_4:3869784-3869803 | Msa0664750:intron | 30.0% |
| !! | ATAAATTAGTGGGTTGAATG+GGG | - | chr4_4:3869785-3869804 | Msa0664750:intron | 30.0% |
| !! | ACAAATTTCTGAGGTTATAG+AGG | + | chr4_4:3869951-3869970 | None:intergenic | 30.0% |
| ATCATTGTATATTGCATCTC+TGG | - | chr4_4:3870091-3870110 | Msa0664750:intron | 30.0% | |
| ! | GAAAAATATAAGTGATGGTG+TGG | - | chr4_4:3870237-3870256 | Msa0664750:intron | 30.0% |
| ! | TTTTCAACAAGATGCTCTTT+AGG | + | chr4_4:3870330-3870349 | None:intergenic | 30.0% |
| !! | TAAAGAGCATCTTGTTGAAA+AGG | - | chr4_4:3870329-3870348 | Msa0664750:intron | 30.0% |
| ACTTGATGAATTTCATCATG+AGG | + | chr4_4:3870627-3870646 | None:intergenic | 30.0% | |
| AATCAACAAATAGCAAGAGA+TGG | + | chr4_4:3870656-3870675 | None:intergenic | 30.0% | |
| !! | TTGCTATTTGTTGATTGCTT+TGG | - | chr4_4:3870660-3870679 | Msa0664750:intron | 30.0% |
| !! | GATATTTTGAATTAACCTCG+TGG | - | chr4_4:3870715-3870734 | Msa0664750:intron | 30.0% |
| CAACATAGAGTGGAAATATT+AGG | + | chr4_4:3870817-3870836 | None:intergenic | 30.0% | |
| TGATGATAGATGCTTAATCT+TGG | + | chr4_4:3871154-3871173 | None:intergenic | 30.0% | |
| ! | TAGTCTGTAAAATTTTCGTC+TGG | - | chr4_4:3871409-3871428 | Msa0664750:intron | 30.0% |
| TATTTGAATGTGCTTCTGTT+AGG | - | chr4_4:3871438-3871457 | Msa0664750:intron | 30.0% | |
| ! | TCATAACCAGTGTTGTTAAA+TGG | - | chr4_4:3871541-3871560 | Msa0664750:intron | 30.0% |
| !!! | GATTTTTTGACAACCACTAT+AGG | - | chr4_4:3871577-3871596 | Msa0664750:intron | 30.0% |
| !!! | GTGTTTATATGACGGATTTT+TGG | - | chr4_4:3871626-3871645 | Msa0664750:intron | 30.0% |
| ! | TCTTTTTATAAAAGCTTCCG+AGG | - | chr4_4:3871795-3871814 | Msa0664750:intron | 30.0% |
| TTTATCTCTCTGAACTTACA+GGG | + | chr4_4:3871909-3871928 | None:intergenic | 30.0% | |
| ! | TTTTATCTCTCTGAACTTAC+AGG | + | chr4_4:3871910-3871929 | None:intergenic | 30.0% |
| GTATCTCAGACAAATTAAGA+TGG | - | chr4_4:3872118-3872137 | Msa0664750:intron | 30.0% | |
| AGACAAATTAAGATGGGTAT+TGG | - | chr4_4:3872125-3872144 | Msa0664750:intron | 30.0% | |
| GACAAATTAAGATGGGTATT+GGG | - | chr4_4:3872126-3872145 | Msa0664750:intron | 30.0% | |
| ! | AGCTATGATTTTTATGACTC+TGG | + | chr4_4:3872191-3872210 | None:intergenic | 30.0% |
| GTTATTGTTACTCATGTCTA+TGG | + | chr4_4:3872253-3872272 | None:intergenic | 30.0% | |
| TTCCAACATAGGAACTAAAA+TGG | + | chr4_4:3872654-3872673 | None:intergenic | 30.0% | |
| AGTTCATCAGTAGTTTAACA+TGG | - | chr4_4:3872697-3872716 | Msa0664750:intron | 30.0% | |
| GTTCATCAGTAGTTTAACAT+GGG | - | chr4_4:3872698-3872717 | Msa0664750:intron | 30.0% | |
| TTCATCAGTAGTTTAACATG+GGG | - | chr4_4:3872699-3872718 | Msa0664750:intron | 30.0% | |
| GAATTTAATCAGGGATCAAA+TGG | + | chr4_4:3872746-3872765 | None:intergenic | 30.0% | |
| TGTGAACAAAATCTTAACCT+CGG | - | chr4_4:3872794-3872813 | Msa0664750:CDS | 30.0% | |
| AATTCTTTCTGTGATGCTTT+AGG | - | chr4_4:3873050-3873069 | Msa0664750:CDS | 30.0% | |
| CTTAGAGAGAACAAAACAAT+AGG | + | chr4_4:3873160-3873179 | None:intergenic | 30.0% | |
| !! | TGTTTTGTTCTCTCTAAGTT+AGG | - | chr4_4:3873162-3873181 | Msa0664750:CDS | 30.0% |
| CAGAATATACTTATAAAGCC+CGG | - | chr4_4:3873199-3873218 | Msa0664750:CDS | 30.0% | |
| ACACTTGTAGAAGCAAAATA+TGG | + | chr4_4:3873358-3873377 | None:intergenic | 30.0% | |
| GAAATGGATAAATGAAGCTT+AGG | - | chr4_4:3873584-3873603 | Msa0664750:five_prime_UTR | 30.0% | |
| !! | TCTGACTTGTTGTAAGGATT+CGG | + | chr4_4:3868741-3868760 | None:intergenic | 35.0% |
| GTTAATAGATCATCGGAATC+AGG | + | chr4_4:3868887-3868906 | None:intergenic | 35.0% | |
| TACATATCCTGAAACGAGAT+TGG | + | chr4_4:3868920-3868939 | None:intergenic | 35.0% | |
| AAATTGAGACCTCAAGTGAA+AGG | - | chr4_4:3869247-3869266 | Msa0664750:intron | 35.0% | |
| ! | CAATCTTTTCCTTTCACTTG+AGG | + | chr4_4:3869259-3869278 | None:intergenic | 35.0% |
| CTCAAGTGAAAGGAAAAGAT+TGG | - | chr4_4:3869257-3869276 | Msa0664750:intron | 35.0% | |
| ! | CATTTCATCTTCCTCTAAAG+AGG | - | chr4_4:3869553-3869572 | Msa0664750:intron | 35.0% |
| TGATAAAGTTCATTCGCTGT+CGG | + | chr4_4:3869717-3869736 | None:intergenic | 35.0% | |
| TCTAGTAGTGTTTGAGCTTA+TGG | + | chr4_4:3869825-3869844 | None:intergenic | 35.0% | |
| TTTGGCAAGACAAATTTCTG+AGG | + | chr4_4:3869960-3869979 | None:intergenic | 35.0% | |
| CTTTATACTAAGGCTCTGTT+TGG | + | chr4_4:3869978-3869997 | None:intergenic | 35.0% | |
| ATAGGTCCACTATTGTTTAG+TGG | - | chr4_4:3870016-3870035 | Msa0664750:intron | 35.0% | |
| CCAATTCCACTAAACAATAG+TGG | + | chr4_4:3870025-3870044 | None:intergenic | 35.0% | |
| CCACTATTGTTTAGTGGAAT+TGG | - | chr4_4:3870022-3870041 | Msa0664750:intron | 35.0% | |
| ATATTCAGTGATGTCAATCG+CGG | + | chr4_4:3870071-3870090 | None:intergenic | 35.0% | |
| TTTATAAAGCTCTTGCCAAG+TGG | - | chr4_4:3870169-3870188 | Msa0664750:intron | 35.0% | |
| ATTGATATGTTGTCCCTGAT+TGG | - | chr4_4:3870276-3870295 | Msa0664750:intron | 35.0% | |
| CAATTGTAGCTATCAGATGA+AGG | + | chr4_4:3870433-3870452 | None:intergenic | 35.0% | |
| TTTCCGTAATTGAGAGTTGT+AGG | - | chr4_4:3870686-3870705 | Msa0664750:intron | 35.0% | |
| ! | TATTTTGCTTCACATGTCGA+TGG | - | chr4_4:3870747-3870766 | Msa0664750:intron | 35.0% |
| ATCATCAGTTCTACACAAGA+AGG | - | chr4_4:3871167-3871186 | Msa0664750:intron | 35.0% | |
| !!! | TTTTTTAACACCCTACCGTA+TGG | - | chr4_4:3871511-3871530 | Msa0664750:CDS | 35.0% |
| !! | GTTAAATGGCATTGGTTTAG+CGG | - | chr4_4:3871555-3871574 | Msa0664750:intron | 35.0% |
| ! | CACTATAGGCATTTTGTGAA+GGG | - | chr4_4:3871591-3871610 | Msa0664750:intron | 35.0% |
| ! | ACTATAGGCATTTTGTGAAG+GGG | - | chr4_4:3871592-3871611 | Msa0664750:intron | 35.0% |
| AAATATTCTGCAAAGGAGAC+TGG | - | chr4_4:3871692-3871711 | Msa0664750:intron | 35.0% | |
| AATATTCTGCAAAGGAGACT+GGG | - | chr4_4:3871693-3871712 | Msa0664750:intron | 35.0% | |
| GATTGAGATTGAGATTGAGA+TGG | + | chr4_4:3872000-3872019 | None:intergenic | 35.0% | |
| ATCTCAATCTCAATCTCACT+TGG | - | chr4_4:3872005-3872024 | Msa0664750:intron | 35.0% | |
| ATTGTTTATGTAGCAAGCTC+TGG | - | chr4_4:3872059-3872078 | Msa0664750:intron | 35.0% | |
| ACTGACATGGCTTAATAGAT+GGG | - | chr4_4:3872558-3872577 | Msa0664750:intron | 35.0% | |
| ATAGATGGGAATGTGTTTAC+AGG | - | chr4_4:3872572-3872591 | Msa0664750:intron | 35.0% | |
| ACATAGGAACTAAAATGGAG+TGG | + | chr4_4:3872649-3872668 | None:intergenic | 35.0% | |
| !!! | CTCCATTTTAGTTCCTATGT+TGG | - | chr4_4:3872649-3872668 | Msa0664750:intron | 35.0% |
| CAAAATTATATTGAAGGCCG+AGG | + | chr4_4:3872814-3872833 | None:intergenic | 35.0% | |
| TATTCATTGCACACTAGGAT+GGG | + | chr4_4:3872917-3872936 | None:intergenic | 35.0% | |
| ATTCATGTGACTAGTGATGA+GGG | + | chr4_4:3872941-3872960 | None:intergenic | 35.0% | |
| AATTCATGTGACTAGTGATG+AGG | + | chr4_4:3872942-3872961 | None:intergenic | 35.0% | |
| TCTTTGACTGGGAGTAATTA+AGG | + | chr4_4:3872974-3872993 | None:intergenic | 35.0% | |
| TTAATTACTCCCAGTCAAAG+AGG | - | chr4_4:3872973-3872992 | Msa0664750:CDS | 35.0% | |
| AATAGTAATACTAGCCAGAC+CGG | + | chr4_4:3873017-3873036 | None:intergenic | 35.0% | |
| TGATAGCAATGGTTCAAAAG+AGG | - | chr4_4:3873094-3873113 | Msa0664750:CDS | 35.0% | |
| AAAACAATAGGAATCCCAGT+CGG | + | chr4_4:3873148-3873167 | None:intergenic | 35.0% | |
| ! | CGGGCTTTATAAGTATATTC+TGG | + | chr4_4:3873201-3873220 | None:intergenic | 35.0% |
| TAGACTGGATAAAATCAGCT+GGG | + | chr4_4:3873293-3873312 | None:intergenic | 35.0% | |
| TTAGACTGGATAAAATCAGC+TGG | + | chr4_4:3873294-3873313 | None:intergenic | 35.0% | |
| ! | AGTGTTGTTCCATATATCCA+TGG | - | chr4_4:3873373-3873392 | Msa0664750:CDS | 35.0% |
| ATTCTTCAGCCATGGATATA+TGG | + | chr4_4:3873385-3873404 | None:intergenic | 35.0% | |
| TTACGATGGAAAAGACAACA+AGG | + | chr4_4:3873544-3873563 | None:intergenic | 35.0% | |
| !!! | GAGGGGTTTTTCTGAGATTA+GGG | + | chr4_4:3868571-3868590 | None:intergenic | 40.0% |
| !!! | AGAGGGGTTTTTCTGAGATT+AGG | + | chr4_4:3868572-3868591 | None:intergenic | 40.0% |
| !!! | TGGGTTTTGTGGTTTTGAGA+CGG | + | chr4_4:3868634-3868653 | None:intergenic | 40.0% |
| TTGTTGTAAGGATTCGGAGA+AGG | + | chr4_4:3868735-3868754 | None:intergenic | 40.0% | |
| !! | TGAGCTTCTGACTTGTTGTA+AGG | + | chr4_4:3868747-3868766 | None:intergenic | 40.0% |
| !! | TTGGATTCGTTTTGTTGCGA+GGG | + | chr4_4:3868815-3868834 | None:intergenic | 40.0% |
| !! | TTTGGATTCGTTTTGTTGCG+AGG | + | chr4_4:3868816-3868835 | None:intergenic | 40.0% |
| GATACGTCGAAAACTACCAT+CGG | - | chr4_4:3868977-3868996 | Msa0664750:CDS | 40.0% | |
| ATTGGACTTGATGTGATTCG+TGG | - | chr4_4:3869013-3869032 | Msa0664750:CDS | 40.0% | |
| TTGTTACCGGATTCGATGTT+TGG | - | chr4_4:3869127-3869146 | Msa0664750:intron | 40.0% | |
| TGTTACCGGATTCGATGTTT+GGG | - | chr4_4:3869128-3869147 | Msa0664750:intron | 40.0% | |
| GATGTTTGGGAAGGAGATAA+GGG | - | chr4_4:3869141-3869160 | Msa0664750:intron | 40.0% | |
| TTAGCCAAGGTGAATGATTC+AGG | - | chr4_4:3869169-3869188 | Msa0664750:intron | 40.0% | |
| TAGCCAAGGTGAATGATTCA+GGG | - | chr4_4:3869170-3869189 | Msa0664750:intron | 40.0% | |
| ! | GTGAATGATTCAGGGAGTTT+TGG | - | chr4_4:3869178-3869197 | Msa0664750:intron | 40.0% |
| TGAGAGGTTGAAGAAAGTGA+GGG | - | chr4_4:3869300-3869319 | Msa0664750:intron | 40.0% | |
| GTTGAAGAAAGTGAGGGAAA+TGG | - | chr4_4:3869306-3869325 | Msa0664750:intron | 40.0% | |
| GATGATAGACTAGAGAAGCT+TGG | - | chr4_4:3869530-3869549 | Msa0664750:intron | 40.0% | |
| CAAAAGGGTTTCCTCTTTAG+AGG | + | chr4_4:3869567-3869586 | None:intergenic | 40.0% | |
| GATAAAGTTCATTCGCTGTC+GGG | + | chr4_4:3869716-3869735 | None:intergenic | 40.0% | |
| CTAGATAAGGTAGCTGATAG+CGG | - | chr4_4:3869743-3869762 | Msa0664750:intron | 40.0% | |
| TGTTGTCAATTAGGGGCTAT+AGG | - | chr4_4:3869998-3870017 | Msa0664750:intron | 40.0% | |
| ATATTGCATCTCTGGTCATG+TGG | - | chr4_4:3870099-3870118 | Msa0664750:intron | 40.0% | |
| TCAACAAGATGCTCTTTAGG+AGG | + | chr4_4:3870327-3870346 | None:intergenic | 40.0% | |
| CTGTCCTTCTTGAATTGTTG+AGG | - | chr4_4:3870401-3870420 | Msa0664750:intron | 40.0% | |
| AGCACCTCAACAATTCAAGA+AGG | + | chr4_4:3870408-3870427 | None:intergenic | 40.0% | |
| AAAATAATCCAGACACCACG+AGG | + | chr4_4:3870733-3870752 | None:intergenic | 40.0% | |
| GTACTGGAATCAACATAGAG+TGG | + | chr4_4:3870827-3870846 | None:intergenic | 40.0% | |
| ! | TGTTATCTGGGTGAAAGTAC+TGG | + | chr4_4:3870843-3870862 | None:intergenic | 40.0% |
| TCATGATTGGATCGAGTGTT+TGG | - | chr4_4:3871052-3871071 | Msa0664750:intron | 40.0% | |
| TGAATGTGCTTCTGTTAGGT+AGG | - | chr4_4:3871442-3871461 | Msa0664750:intron | 40.0% | |
| ! | CCAATGCCATTTAACAACAC+TGG | + | chr4_4:3871550-3871569 | None:intergenic | 40.0% |
| ! | CCAGTGTTGTTAAATGGCAT+TGG | - | chr4_4:3871547-3871566 | Msa0664750:intron | 40.0% |
| CCTTCACAAAATGCCTATAG+TGG | + | chr4_4:3871593-3871612 | None:intergenic | 40.0% | |
| ! | CCACTATAGGCATTTTGTGA+AGG | - | chr4_4:3871590-3871609 | Msa0664750:intron | 40.0% |
| ! | CTATAGGCATTTTGTGAAGG+GGG | - | chr4_4:3871593-3871612 | Msa0664750:intron | 40.0% |
| GTCATATAAACACACCACTG+CGG | + | chr4_4:3871619-3871638 | None:intergenic | 40.0% | |
| GCAGTGGTGTGTTTATATGA+CGG | - | chr4_4:3871618-3871637 | Msa0664750:intron | 40.0% | |
| CCAATGTTGTTAATGGCAGA+TGG | + | chr4_4:3871652-3871671 | None:intergenic | 40.0% | |
| CCATCTGCCATTAACAACAT+TGG | - | chr4_4:3871649-3871668 | Msa0664750:intron | 40.0% | |
| GGTGTGACCAATGTTGTTAA+TGG | + | chr4_4:3871659-3871678 | None:intergenic | 40.0% | |
| CCAATCATGATCGTGCATTA+TGG | + | chr4_4:3871720-3871739 | None:intergenic | 40.0% | |
| CCATAATGCACGATCATGAT+TGG | - | chr4_4:3871717-3871736 | Msa0664750:intron | 40.0% | |
| TGTTGAAATTTAGCCGTTCC+AGG | - | chr4_4:3871935-3871954 | Msa0664750:intron | 40.0% | |
| GTTGAAATTTAGCCGTTCCA+GGG | - | chr4_4:3871936-3871955 | Msa0664750:intron | 40.0% | |
| GAGATTGAGATGGTAGACAA+CGG | + | chr4_4:3871990-3872009 | None:intergenic | 40.0% | |
| TTGGTAGATTGGATGAAAGC+TGG | - | chr4_4:3872384-3872403 | Msa0664750:intron | 40.0% | |
| TGGTAGATTGGATGAAAGCT+GGG | - | chr4_4:3872385-3872404 | Msa0664750:intron | 40.0% | |
| GACTGACATGGCTTAATAGA+TGG | - | chr4_4:3872557-3872576 | Msa0664750:intron | 40.0% | |
| ATCAGTAGTTTAACATGGGG+TGG | - | chr4_4:3872702-3872721 | Msa0664750:intron | 40.0% | |
| CTATTCATTGCACACTAGGA+TGG | + | chr4_4:3872918-3872937 | None:intergenic | 40.0% | |
| TGACTGGGAGTAATTAAGGA+CGG | + | chr4_4:3872970-3872989 | None:intergenic | 40.0% | |
| GCAATCTTTCCTCTTTGACT+GGG | + | chr4_4:3872985-3873004 | None:intergenic | 40.0% | |
| AGCAATCTTTCCTCTTTGAC+TGG | + | chr4_4:3872986-3873005 | None:intergenic | 40.0% | |
| GAAAGATTGCTACATAGCTC+CGG | - | chr4_4:3872995-3873014 | Msa0664750:CDS | 40.0% | |
| !! | TGCTTTAGGATGTGCATTCT+CGG | - | chr4_4:3873064-3873083 | Msa0664750:CDS | 40.0% |
| TATACTTATAAAGCCCGGAC+TGG | - | chr4_4:3873204-3873223 | Msa0664750:CDS | 40.0% | |
| ATTGACTAAGCTGCTTGAAC+TGG | + | chr4_4:3873329-3873348 | None:intergenic | 40.0% | |
| AGTTCAAGCAGCTTAGTCAA+TGG | - | chr4_4:3873328-3873347 | Msa0664750:CDS | 40.0% | |
| TGGTGGAGAAAGAGAAAGAG+GGG | + | chr4_4:3868588-3868607 | None:intergenic | 45.0% | |
| ! | GTGGTGGAGAAAGAGAAAGA+GGG | + | chr4_4:3868589-3868608 | None:intergenic | 45.0% |
| !! | AGAGTAGGGTTTGGGTTTTG+TGG | + | chr4_4:3868645-3868664 | None:intergenic | 45.0% |
| TGTAAGGATTCGGAGAAGGA+GGG | + | chr4_4:3868731-3868750 | None:intergenic | 45.0% | |
| TTGTAAGGATTCGGAGAAGG+AGG | + | chr4_4:3868732-3868751 | None:intergenic | 45.0% | |
| !! | GAAGGTGTTGTGTTTGACGT+TGG | + | chr4_4:3868782-3868801 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGAACGGAAGCTT+TGG | + | chr4_4:3868859-3868878 | None:intergenic | 45.0% |
| TAGATCATCGGAATCAGGTG+CGG | + | chr4_4:3868882-3868901 | None:intergenic | 45.0% | |
| GAAGAAGCCAATCTCGTTTC+AGG | - | chr4_4:3868910-3868929 | Msa0664750:exon | 45.0% | |
| TCGATCCAAAGATTCCGCTT+CGG | - | chr4_4:3868955-3868974 | Msa0664750:CDS | 45.0% | |
| ! | AGTTTTCGACGTATCCGAAG+CGG | + | chr4_4:3868972-3868991 | None:intergenic | 45.0% |
| AAATTCGACGAATCAGACGC+CGG | - | chr4_4:3869054-3869073 | Msa0664750:CDS | 45.0% | |
| CTATTCCCCGCTGACATATT+CGG | + | chr4_4:3869097-3869116 | None:intergenic | 45.0% | |
| AATATGTCAGCGGGGAATAG+TGG | - | chr4_4:3869097-3869116 | Msa0664750:intron | 45.0% | |
| ATATGTCAGCGGGGAATAGT+GGG | - | chr4_4:3869098-3869117 | Msa0664750:intron | 45.0% | |
| !! | TAGTGGGACGAGTTTGTTAC+CGG | - | chr4_4:3869114-3869133 | Msa0664750:intron | 45.0% |
| TCCTTCCCAAACATCGAATC+CGG | + | chr4_4:3869136-3869155 | None:intergenic | 45.0% | |
| CGATGTTTGGGAAGGAGATA+AGG | - | chr4_4:3869140-3869159 | Msa0664750:intron | 45.0% | |
| TTGGGAAGGAGATAAGGGAT+AGG | - | chr4_4:3869146-3869165 | Msa0664750:intron | 45.0% | |
| ! | GATAAGGGATAGGTTAGCCA+AGG | - | chr4_4:3869156-3869175 | Msa0664750:intron | 45.0% |
| ACTCCCTGAATCATTCACCT+TGG | + | chr4_4:3869176-3869195 | None:intergenic | 45.0% | |
| !! | CAGGGAGTTTTGGTACTGTT+AGG | - | chr4_4:3869188-3869207 | Msa0664750:intron | 45.0% |
| CTTCAACCTCTCACTCAACT+CGG | + | chr4_4:3869293-3869312 | None:intergenic | 45.0% | |
| GTGAGAGGTTGAAGAAAGTG+AGG | - | chr4_4:3869299-3869318 | Msa0664750:intron | 45.0% | |
| ATAAAGCTCTTGCCAAGTGG+AGG | - | chr4_4:3870172-3870191 | Msa0664750:intron | 45.0% | |
| TAAAGCTCTTGCCAAGTGGA+GGG | - | chr4_4:3870173-3870192 | Msa0664750:intron | 45.0% | |
| AGGGTTGTGGTCATGTTGTA+AGG | - | chr4_4:3870192-3870211 | Msa0664750:intron | 45.0% | |
| GATATGTTGTCCCTGATTGG+TGG | - | chr4_4:3870279-3870298 | Msa0664750:intron | 45.0% | |
| AACGTCAAAGTCAAAGCCTG+TGG | - | chr4_4:3870456-3870475 | Msa0664750:intron | 45.0% | |
| CGGCCTACAACTCTCAATTA+CGG | + | chr4_4:3870692-3870711 | None:intergenic | 45.0% | |
| TGAATTAACCTCGTGGTGTC+TGG | - | chr4_4:3870722-3870741 | Msa0664750:intron | 45.0% | |
| TGCTTCACATGTCGATGGAT+AGG | - | chr4_4:3870752-3870771 | Msa0664750:intron | 45.0% | |
| CAGCAGAGGACATGTTATCT+GGG | + | chr4_4:3870855-3870874 | None:intergenic | 45.0% | |
| TCAGCAGAGGACATGTTATC+TGG | + | chr4_4:3870856-3870875 | None:intergenic | 45.0% | |
| AAGATGTCCGAGTCAGATTG+TGG | - | chr4_4:3870916-3870935 | Msa0664750:intron | 45.0% | |
| TCTGCTCGTGTTCAAGGTAA+AGG | - | chr4_4:3870940-3870959 | Msa0664750:intron | 45.0% | |
| GGTTATGATGACTCGCCATA+CGG | + | chr4_4:3871529-3871548 | None:intergenic | 45.0% | |
| AAAAGCTTCCGAGGAATGCT+AGG | - | chr4_4:3871804-3871823 | Msa0664750:intron | 45.0% | |
| AAAGCTTCCGAGGAATGCTA+GGG | - | chr4_4:3871805-3871824 | Msa0664750:intron | 45.0% | |
| TGTATGACCCTAGCATTCCT+CGG | + | chr4_4:3871815-3871834 | None:intergenic | 45.0% | |
| AACTTACAGGGCCAGTTAAC+TGG | + | chr4_4:3871897-3871916 | None:intergenic | 45.0% | |
| AGATGGTAGACAACGGAAAG+CGG | + | chr4_4:3871983-3872002 | None:intergenic | 45.0% | |
| ! | GTTTATGTAGCAAGCTCTGG+TGG | - | chr4_4:3872062-3872081 | Msa0664750:intron | 45.0% |
| GGTAGATTGGATGAAAGCTG+GGG | - | chr4_4:3872386-3872405 | Msa0664750:intron | 45.0% | |
| ! | TTGCAAGAGCAGGACAGTTT+TGG | - | chr4_4:3872449-3872468 | Msa0664750:intron | 45.0% |
| CTGGAGATGGTGAGTATAGA+AGG | - | chr4_4:3872478-3872497 | Msa0664750:intron | 45.0% | |
| AGGGCTATTCATTGCACACT+AGG | + | chr4_4:3872922-3872941 | None:intergenic | 45.0% | |
| TAGGATGTGCATTCTCGGAA+AGG | - | chr4_4:3873069-3873088 | Msa0664750:CDS | 45.0% | |
| TCGGAAAGGTCTGATAGCAA+TGG | - | chr4_4:3873083-3873102 | Msa0664750:CDS | 45.0% | |
| AATACCTCAGAAGAACCGAC+TGG | - | chr4_4:3873130-3873149 | Msa0664750:CDS | 45.0% | |
| ATACCTCAGAAGAACCGACT+GGG | - | chr4_4:3873131-3873150 | Msa0664750:CDS | 45.0% | |
| !! | TAAAGCCCGGACTGGTAAAT+CGG | - | chr4_4:3873212-3873231 | Msa0664750:CDS | 45.0% |
| AGCAACACATTCTTCAGCCA+TGG | + | chr4_4:3873393-3873412 | None:intergenic | 45.0% | |
| !! | GGTGGTGGAGAAAGAGAAAG+AGG | + | chr4_4:3868590-3868609 | None:intergenic | 50.0% |
| TTCTCCACCACCACCAACAA+TGG | - | chr4_4:3868598-3868617 | Msa0664750:three_prime_UTR | 50.0% | |
| !! | AGAAGAAGCGCCATTGTTGG+TGG | + | chr4_4:3868611-3868630 | None:intergenic | 50.0% |
| ! | AGTGGTGGAGAGTAGGGTTT+GGG | + | chr4_4:3868653-3868672 | None:intergenic | 50.0% |
| ! | TGATGGAGTGGTGGAGAGTA+GGG | + | chr4_4:3868659-3868678 | None:intergenic | 50.0% |
| TCCAACTCCGGTGACAATGA+CGG | - | chr4_4:3868692-3868711 | Msa0664750:three_prime_UTR | 50.0% | |
| ! | TTTTGTTGCGAGGGAGAGAG+AGG | + | chr4_4:3868806-3868825 | None:intergenic | 50.0% |
| CGTATCCGAAGCGGAATCTT+TGG | + | chr4_4:3868963-3868982 | None:intergenic | 50.0% | |
| ACGTCGAAAACTACCATCGG+TGG | - | chr4_4:3868980-3868999 | Msa0664750:CDS | 50.0% | |
| TCGAAAACTACCATCGGTGG+TGG | - | chr4_4:3868983-3869002 | Msa0664750:CDS | 50.0% | |
| ! | AAAACTACCATCGGTGGTGG+TGG | - | chr4_4:3868986-3869005 | Msa0664750:CDS | 50.0% |
| ! | AAACTACCATCGGTGGTGGT+GGG | - | chr4_4:3868987-3869006 | Msa0664750:CDS | 50.0% |
| GACATATTCGGTCTCCACCT+CGG | + | chr4_4:3869085-3869104 | None:intergenic | 50.0% | |
| GTGGAGACCGAATATGTCAG+CGG | - | chr4_4:3869087-3869106 | Msa0664750:intron | 50.0% | |
| TGGAGACCGAATATGTCAGC+GGG | - | chr4_4:3869088-3869107 | Msa0664750:intron | 50.0% | |
| ACCGGATTCGATGTTTGGGA+AGG | - | chr4_4:3869132-3869151 | Msa0664750:intron | 50.0% | |
| GCGTCGCTATTCGACAACAT+CGG | + | chr4_4:3869601-3869620 | None:intergenic | 50.0% | |
| GCTTGGAGTTCCACCAATCA+GGG | + | chr4_4:3870292-3870311 | None:intergenic | 50.0% | |
| AGCTTGGAGTTCCACCAATC+AGG | + | chr4_4:3870293-3870312 | None:intergenic | 50.0% | |
| ! | GGAGGCTTTGACAAGTAGCT+TGG | + | chr4_4:3870309-3870328 | None:intergenic | 50.0% |
| AGCAGAGCCACAATCTGACT+CGG | + | chr4_4:3870926-3870945 | None:intergenic | 50.0% | |
| TGATGACTCGCCATACGGTA+GGG | + | chr4_4:3871524-3871543 | None:intergenic | 50.0% | |
| ATGATGACTCGCCATACGGT+AGG | + | chr4_4:3871525-3871544 | None:intergenic | 50.0% | |
| GATGGTAGACAACGGAAAGC+GGG | + | chr4_4:3871982-3872001 | None:intergenic | 50.0% | |
| CCTGCTCTTGCAAGTTCTCT+TGG | + | chr4_4:3872442-3872461 | None:intergenic | 50.0% | |
| CCAAGAGAACTTGCAAGAGC+AGG | - | chr4_4:3872439-3872458 | Msa0664750:intron | 50.0% | |
| !! | CAAGAGCAGGACAGTTTTGG+TGG | - | chr4_4:3872452-3872471 | Msa0664750:intron | 50.0% |
| !! | AGGACAGTTTTGGTGGAGAC+TGG | - | chr4_4:3872459-3872478 | Msa0664750:intron | 50.0% |
| !! | GTTTTGGTGGAGACTGGAGA+TGG | - | chr4_4:3872465-3872484 | Msa0664750:intron | 50.0% |
| GGGGTGGACAATGTAATCTG+CGG | - | chr4_4:3872718-3872737 | Msa0664750:CDS | 50.0% | |
| ATTGCTACATAGCTCCGGTC+TGG | - | chr4_4:3873000-3873019 | Msa0664750:CDS | 50.0% | |
| ! | AATCCCAGTCGGTTCTTCTG+AGG | + | chr4_4:3873137-3873156 | None:intergenic | 50.0% |
| !! | AAAGCCCGGACTGGTAAATC+GGG | - | chr4_4:3873213-3873232 | Msa0664750:CDS | 50.0% |
| ! | GGCTAGTCAGACACTTAGAC+TGG | + | chr4_4:3873308-3873327 | None:intergenic | 50.0% |
| !! | AGAAGCGCCATTGTTGGTGG+TGG | + | chr4_4:3868608-3868627 | None:intergenic | 55.0% |
| !! | CGGAGAAGAAGCGCCATTGT+TGG | + | chr4_4:3868614-3868633 | None:intergenic | 55.0% |
| ! | GAGTGGTGGAGAGTAGGGTT+TGG | + | chr4_4:3868654-3868673 | None:intergenic | 55.0% |
| ! | GTGATGGAGTGGTGGAGAGT+AGG | + | chr4_4:3868660-3868679 | None:intergenic | 55.0% |
| !! | GAGAAGAGGTGATGGAGTGG+TGG | + | chr4_4:3868668-3868687 | None:intergenic | 55.0% |
| !! | GTGGAGAAGAGGTGATGGAG+TGG | + | chr4_4:3868671-3868690 | None:intergenic | 55.0% |
| TGGAGGTGGAGAAGAGGTGA+TGG | + | chr4_4:3868676-3868695 | None:intergenic | 55.0% | |
| CTCTTCTCCACCTCCAACTC+CGG | - | chr4_4:3868680-3868699 | Msa0664750:three_prime_UTR | 55.0% | |
| ATTGTCACCGGAGTTGGAGG+TGG | + | chr4_4:3868690-3868709 | None:intergenic | 55.0% | |
| GTCATTGTCACCGGAGTTGG+AGG | + | chr4_4:3868693-3868712 | None:intergenic | 55.0% | |
| ACCGTCATTGTCACCGGAGT+TGG | + | chr4_4:3868696-3868715 | None:intergenic | 55.0% | |
| AACTCCGGTGACAATGACGG+TGG | - | chr4_4:3868695-3868714 | Msa0664750:three_prime_UTR | 55.0% | |
| !!! | CAGGTGCGGTGGTTTTGGAA+CGG | + | chr4_4:3868868-3868887 | None:intergenic | 55.0% |
| ! | GGAATCAGGTGCGGTGGTTT+TGG | + | chr4_4:3868873-3868892 | None:intergenic | 55.0% |
| ATCATCGGAATCAGGTGCGG+TGG | + | chr4_4:3868879-3868898 | None:intergenic | 55.0% | |
| ! | AACTACCATCGGTGGTGGTG+GGG | - | chr4_4:3868988-3869007 | Msa0664750:CDS | 55.0% |
| GGAGACCGAATATGTCAGCG+GGG | - | chr4_4:3869089-3869108 | Msa0664750:intron | 55.0% | |
| ! | CGATTGCCGAGTTGAGTGAG+AGG | - | chr4_4:3869284-3869303 | Msa0664750:intron | 55.0% |
| GTGATGTCAATCGCGGATCG+CGG | + | chr4_4:3870064-3870083 | None:intergenic | 55.0% | |
| TCTTGCCAAGTGGAGGGTTG+TGG | - | chr4_4:3870179-3870198 | Msa0664750:intron | 55.0% | |
| CATGACCACAACCCTCCACT+TGG | + | chr4_4:3870187-3870206 | None:intergenic | 55.0% | |
| ! | TGTGGCTCTGCTCGTGTTCA+AGG | - | chr4_4:3870934-3870953 | Msa0664750:intron | 55.0% |
| GTGGAGATGAGACCCTGGAA+CGG | + | chr4_4:3871951-3871970 | None:intergenic | 55.0% | |
| GTCACCCGATTTACCAGTCC+GGG | + | chr4_4:3873220-3873239 | None:intergenic | 55.0% | |
| CGTCACCCGATTTACCAGTC+CGG | + | chr4_4:3873221-3873240 | None:intergenic | 55.0% | |
| !! | AGCGCCATTGTTGGTGGTGG+TGG | + | chr4_4:3868605-3868624 | None:intergenic | 60.0% |
| CGGAGTTGGAGGTGGAGAAG+AGG | + | chr4_4:3868682-3868701 | None:intergenic | 60.0% | |
| GTCGCCACCGTCATTGTCAC+CGG | + | chr4_4:3868702-3868721 | None:intergenic | 60.0% | |
| TGCGAGGGAGAGAGAGGAGA+AGG | + | chr4_4:3868800-3868819 | None:intergenic | 60.0% | |
| !! | ACTACCATCGGTGGTGGTGG+GGG | - | chr4_4:3868989-3869008 | Msa0664750:CDS | 60.0% |
| AATACCCCCACCACCACCGA+TGG | + | chr4_4:3868996-3869015 | None:intergenic | 60.0% | |
| !! | ATCGGTGGTGGTGGGGGTAT+TGG | - | chr4_4:3868995-3869014 | Msa0664750:CDS | 60.0% |
| ! | TTTTGTGAAGGGGGCCGCAG+TGG | - | chr4_4:3871602-3871621 | Msa0664750:intron | 60.0% |
| GTGTCGTGGAGATGAGACCC+TGG | + | chr4_4:3871956-3871975 | None:intergenic | 60.0% | |
| ATCAGACGCCGGTGACGCCG+AGG | - | chr4_4:3869065-3869084 | Msa0664750:CDS | 70.0% | |
| GGTCTCCACCTCGGCGTCAC+CGG | + | chr4_4:3869076-3869095 | None:intergenic | 70.0% | |
| ! | CGGAAAGCGGGCTCGTGTCG+TGG | + | chr4_4:3871970-3871989 | None:intergenic | 70.0% |
| AGACGCCGGTGACGCCGAGG+TGG | - | chr4_4:3869068-3869087 | Msa0664750:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3868545 | 3873620 | 3868545 | ID=Msa0664750;Name=Msa0664750 |
| chr4_4 | mRNA | 3868545 | 3873620 | 3868545 | ID=Msa0664750-mRNA-1;Parent=Msa0664750;Name=Msa0664750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=72|0.6|0.66|0.83|0.6|0.66|6|369|444 |
| chr4_4 | exon | 3868545 | 3869093 | 3868545 | ID=Msa0664750-mRNA-1:exon:1309;Parent=Msa0664750-mRNA-1 |
| chr4_4 | exon | 3870977 | 3871029 | 3870977 | ID=Msa0664750-mRNA-1:exon:1308;Parent=Msa0664750-mRNA-1 |
| chr4_4 | exon | 3871210 | 3871321 | 3871210 | ID=Msa0664750-mRNA-1:exon:1307;Parent=Msa0664750-mRNA-1 |
| chr4_4 | exon | 3871475 | 3871541 | 3871475 | ID=Msa0664750-mRNA-1:exon:1306;Parent=Msa0664750-mRNA-1 |
| chr4_4 | exon | 3871807 | 3871897 | 3871807 | ID=Msa0664750-mRNA-1:exon:1305;Parent=Msa0664750-mRNA-1 |
| chr4_4 | exon | 3872717 | 3873620 | 3872717 | ID=Msa0664750-mRNA-1:exon:1304;Parent=Msa0664750-mRNA-1 |
| chr4_4 | five_prime_UTR | 3873549 | 3873620 | 3873549 | ID=Msa0664750-mRNA-1:five_prime_utr;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3872717 | 3873548 | 3872717 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3871807 | 3871897 | 3871807 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3871475 | 3871541 | 3871475 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3871210 | 3871321 | 3871210 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3870977 | 3871029 | 3870977 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | CDS | 3868914 | 3869093 | 3868914 | ID=Msa0664750-mRNA-1:cds;Parent=Msa0664750-mRNA-1 |
| chr4_4 | three_prime_UTR | 3868545 | 3868913 | 3868545 | ID=Msa0664750-mRNA-1:three_prime_utr;Parent=Msa0664750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
