AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595150 MtrunA17_Chr4g0014331 86.000 200 22 2 1 195 1 199 4.16e-113 320
Msa0595150 MtrunA17_Chr3g0081601 46.154 117 62 1 77 192 64 180 4.73e-31 111
Msa0595150 MtrunA17_Chr5g0394471 38.739 111 68 0 82 192 226 336 1.08e-21 90.9
Msa0595150 MtrunA17_Chr1g0211791 32.990 97 65 0 96 192 15 111 3.06e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595150 AT3G20230.1 66.460 161 51 1 35 195 29 186 8.86e-78 231
Msa0595150 AT1G08845.1 41.322 121 71 0 72 192 62 182 2.57e-29 107
Msa0595150 AT1G08845.3 41.322 121 71 0 72 192 62 182 2.57e-29 107
Msa0595150 AT1G08845.2 41.322 121 71 0 72 192 107 227 3.16e-29 108
Msa0595150 AT5G27820.1 34.021 97 64 0 96 192 15 111 8.77e-18 75.9
Msa0595150 AT3G22450.1 39.655 116 69 1 78 192 175 290 5.56e-15 72.0
Msa0595150 AT3G22450.2 39.655 116 69 1 78 192 175 290 5.56e-15 72.0

Find 51 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGCTTGTAGAGTAAT+TGG 0.243088 4_2:+24015327 Msa0595150:CDS
CGCTTCCATGATTTCCTGCT+GGG 0.263722 4_2:-24015147 None:intergenic
TTGTGTTTGTTCTCTCTTCT+CGG 0.282120 4_2:+24015654 Msa0595150:three_prime_UTR
TCAATCCTTTCATTCTTTCT+CGG 0.316725 4_2:-24015405 None:intergenic
CCGCTTCCATGATTTCCTGC+TGG 0.319690 4_2:-24015148 None:intergenic
CCAATTACTCTACAAGCTTC+AGG 0.324712 4_2:-24015327 None:intergenic
AAGAGAGTTTCGAAGATCTT+TGG 0.330634 4_2:-24015289 None:intergenic
CTTGATACTGTTAAAGAAAA+CGG 0.356290 4_2:+24015447 Msa0595150:CDS
TTGATACTGTTAAAGAAAAC+GGG 0.383944 4_2:+24015448 Msa0595150:CDS
TTTGGGATTGTTGGAGTTTG+AGG 0.385486 4_2:-24011899 None:intergenic
TTGGGATTGTTGGAGTTTGA+GGG 0.396933 4_2:-24011898 None:intergenic
AGAGAGAGTGGTTGTTGAGA+TGG 0.397837 4_2:-24011875 None:intergenic
GGAACGTACTTTGGGATTGT+TGG 0.402911 4_2:-24011908 None:intergenic
TGAAAGGATTGAAGGTAGAC+TGG 0.403984 4_2:+24015416 Msa0595150:CDS
TGTGTTTGTTCTCTCTTCTC+GGG 0.431642 4_2:+24015655 Msa0595150:three_prime_UTR
TCGAAGATCTTTGGCGTTTG+TGG 0.436613 4_2:-24015280 None:intergenic
AGAAACCCAGCAGGAAATCA+TGG 0.462560 4_2:+24015142 Msa0595150:CDS
GGATCAATGTCCACACTTAG+TGG 0.463833 4_2:+24015676 Msa0595150:three_prime_UTR
GAGATGGAGATGGAGATGAT+AGG 0.465629 4_2:-24011807 None:intergenic
GTACTTTCATTCGAGCTGCT+TGG 0.466162 4_2:+24015091 Msa0595150:CDS
TCTGTAGCGGCTAAGGAAGA+AGG 0.476505 4_2:+24011676 Msa0595150:five_prime_UTR
AGAAAGAATGAAAGGATTGA+AGG 0.478137 4_2:+24015408 Msa0595150:CDS
GTGGTATACTCAATGGTATA+CGG 0.482549 4_2:+24015695 Msa0595150:three_prime_UTR
GGAGTTTGAGGGAGAGAGAG+TGG 0.482807 4_2:-24011887 None:intergenic
GATAACAAGCTGTGTTGGTT+GGG 0.501822 4_2:+24011732 Msa0595150:CDS
AGCGAAGAGCGAGATGGAGA+TGG 0.503328 4_2:-24011817 None:intergenic
ATATCACTTTGCTTGTTCCA+CGG 0.510627 4_2:-24015248 None:intergenic
GAGATGGAGATGATAGGAGT+TGG 0.513605 4_2:-24011801 None:intergenic
ACAAGCTTCAGGATCTATCA+AGG 0.541521 4_2:-24015316 None:intergenic
ACACTTAGTGGTATACTCAA+TGG 0.544078 4_2:+24015688 Msa0595150:three_prime_UTR
GAGATGGAGATGGGTAAAGA+AGG 0.547972 4_2:-24011859 None:intergenic
TGATAACAAGCTGTGTTGGT+TGG 0.559425 4_2:+24011731 Msa0595150:CDS
AGTGGTTGTTGAGATGGAGA+TGG 0.559805 4_2:-24011869 None:intergenic
CGGCTAAGGAAGAAGGAAGA+AGG 0.560343 4_2:+24011683 Msa0595150:five_prime_UTR
GCTTCAGGATCTATCAAGGA+TGG 0.567230 4_2:-24015312 None:intergenic
GTGGTTGTTGAGATGGAGAT+GGG 0.569335 4_2:-24011868 None:intergenic
CCAGCAGGAAATCATGGAAG+CGG 0.573597 4_2:+24015148 Msa0595150:CDS
ACGAACCGAGAAAGAATGAA+AGG 0.579793 4_2:+24015400 Msa0595150:CDS
GATGTGTCCATAAAACATCA+AGG 0.585366 4_2:-24015593 None:intergenic
AACGAAAGCGAAGAGCGAGA+TGG 0.585979 4_2:-24011823 None:intergenic
GCTTATAGCAGAGCGATCAA+AGG 0.589698 4_2:+24015353 Msa0595150:CDS
GAAAGGATTGAAGGTAGACT+GGG 0.594965 4_2:+24015417 Msa0595150:CDS
GGAAGCTGATGTATATGCAA+TGG 0.597806 4_2:+24015374 Msa0595150:CDS
AAAATGATAACAAGCTGTGT+TGG 0.598123 4_2:+24011727 Msa0595150:exon
AAGCTTGTAGAGTAATTGGA+AGG 0.614586 4_2:+24015331 Msa0595150:CDS
AAGCTGAAAAGAAACCCAGC+AGG 0.616349 4_2:+24015133 Msa0595150:CDS
GCTTGGACTCGAAGATCTCG+AGG 0.620097 4_2:+24015108 Msa0595150:CDS
ATTGAGTATACCACTAAGTG+TGG 0.627728 4_2:-24015686 None:intergenic
ACACATCTGAACACAGACAA+TGG 0.651543 4_2:+24015609 Msa0595150:three_prime_UTR
CACGCGAAAGTGACACACCG+TGG 0.691365 4_2:+24015231 Msa0595150:CDS
TCTGTTGCGACACTAAGCTG+CGG 0.760329 4_2:+24011773 Msa0595150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAGAGAT+GGG - chr4_2:24011932-24011951 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAGAGA+TGG - chr4_2:24011933-24011952 None:intergenic 10.0%
!! TTTATTTAATATATGCTATA+TGG + chr4_2:24012707-24012726 Msa0595150:intron 10.0%
!! ATATTTGATATAAAGATTAT+AGG + chr4_2:24014149-24014168 Msa0595150:intron 10.0%
!! AAAATAAATAATTTACACTT+TGG + chr4_2:24014677-24014696 Msa0595150:intron 10.0%
!! AAAAAAAAAAAAAAAGAGAT+GGG - chr4_2:24011932-24011951 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAGAGA+TGG - chr4_2:24011933-24011952 None:intergenic 10.0%
!! TTTATTTAATATATGCTATA+TGG + chr4_2:24012707-24012726 Msa0595150:intron 10.0%
!! ATATTTGATATAAAGATTAT+AGG + chr4_2:24014149-24014168 Msa0595150:intron 10.0%
!! AAAATAAATAATTTACACTT+TGG + chr4_2:24014677-24014696 Msa0595150:intron 10.0%
!! TGATATAAATCTTTATGTAT+AGG + chr4_2:24012593-24012612 Msa0595150:intron 15.0%
!! GATATAAATCTTTATGTATA+GGG + chr4_2:24012594-24012613 Msa0595150:intron 15.0%
!! AGATAATTGCATAATAATAA+GGG - chr4_2:24013169-24013188 None:intergenic 15.0%
!!! TATTTTGATTTTTAAATGTG+TGG + chr4_2:24013413-24013432 Msa0595150:intron 15.0%
!!! ATTTTGATTTTTAAATGTGT+GGG + chr4_2:24013414-24013433 Msa0595150:intron 15.0%
!! TAATCAGTTCTTATTAATAT+AGG - chr4_2:24014004-24014023 None:intergenic 15.0%
!!! TTTTTAGCAAAAGAAATAAT+TGG + chr4_2:24014071-24014090 Msa0595150:intron 15.0%
!!! TTCAATAATCTAATTTTTCT+TGG + chr4_2:24014464-24014483 Msa0595150:intron 15.0%
!!! TTCTTTTTCTAGTTTATTAT+TGG + chr4_2:24014646-24014665 Msa0595150:intron 15.0%
!!! TTTTTTTTTTCTTCATGAAT+TGG - chr4_2:24014820-24014839 None:intergenic 15.0%
!! TAATTTAAACTAACTTTACA+TGG + chr4_2:24014985-24015004 Msa0595150:intron 15.0%
!! AAGAAAATGTCTAATAAAAA+CGG - chr4_2:24015195-24015214 None:intergenic 15.0%
!!! TGTTACAAATTTTATTTAAC+TGG + chr4_2:24015542-24015561 Msa0595150:three_prime_UTR 15.0%
!! TGATATAAATCTTTATGTAT+AGG + chr4_2:24012593-24012612 Msa0595150:intron 15.0%
!! GATATAAATCTTTATGTATA+GGG + chr4_2:24012594-24012613 Msa0595150:intron 15.0%
!! AGATAATTGCATAATAATAA+GGG - chr4_2:24013169-24013188 None:intergenic 15.0%
!!! TATTTTGATTTTTAAATGTG+TGG + chr4_2:24013413-24013432 Msa0595150:intron 15.0%
!!! ATTTTGATTTTTAAATGTGT+GGG + chr4_2:24013414-24013433 Msa0595150:intron 15.0%
!! TAATCAGTTCTTATTAATAT+AGG - chr4_2:24014004-24014023 None:intergenic 15.0%
!!! TTTTTAGCAAAAGAAATAAT+TGG + chr4_2:24014071-24014090 Msa0595150:intron 15.0%
!!! TTCAATAATCTAATTTTTCT+TGG + chr4_2:24014464-24014483 Msa0595150:intron 15.0%
!!! TTCTTTTTCTAGTTTATTAT+TGG + chr4_2:24014646-24014665 Msa0595150:intron 15.0%
!!! TTTTTTTTTTCTTCATGAAT+TGG - chr4_2:24014820-24014839 None:intergenic 15.0%
!! TAATTTAAACTAACTTTACA+TGG + chr4_2:24014985-24015004 Msa0595150:intron 15.0%
!! AAGAAAATGTCTAATAAAAA+CGG - chr4_2:24015195-24015214 None:intergenic 15.0%
!!! TGTTACAAATTTTATTTAAC+TGG + chr4_2:24015542-24015561 Msa0595150:three_prime_UTR 15.0%
!! GTTAAAATTATATGATTACG+TGG + chr4_2:24012063-24012082 Msa0595150:intron 20.0%
!! ATAAAATGTTTATCCAAACA+GGG - chr4_2:24012113-24012132 None:intergenic 20.0%
!! AATAAAATGTTTATCCAAAC+AGG - chr4_2:24012114-24012133 None:intergenic 20.0%
!! ATCATAAACACTTATCATTA+AGG + chr4_2:24012145-24012164 Msa0595150:intron 20.0%
!!! AAATAAAGTCAAACTGTTTT+AGG + chr4_2:24012188-24012207 Msa0595150:intron 20.0%
!!! ATTATTTTCATAAGCTCTTT+AGG - chr4_2:24012242-24012261 None:intergenic 20.0%
!! AAAGAGCTTATGAAAATAAT+CGG + chr4_2:24012242-24012261 Msa0595150:intron 20.0%
!! ATTATTCAATGTTGTAACAA+GGG - chr4_2:24012531-24012550 None:intergenic 20.0%
!! TATTATTCAATGTTGTAACA+AGG - chr4_2:24012532-24012551 None:intergenic 20.0%
!! TGTTACAACATTGAATAATA+AGG + chr4_2:24012532-24012551 Msa0595150:intron 20.0%
!! TGTTGTATTATTATTGATAC+AGG - chr4_2:24013144-24013163 None:intergenic 20.0%
!! GAGATAATTGCATAATAATA+AGG - chr4_2:24013170-24013189 None:intergenic 20.0%
!! ATGATAATTCTATGGTATTT+GGG - chr4_2:24013192-24013211 None:intergenic 20.0%
!! AAATACCATAGAATTATCAT+CGG + chr4_2:24013192-24013211 Msa0595150:intron 20.0%
!!! CAAATGAATTTCAGTATTTT+GGG - chr4_2:24013319-24013338 None:intergenic 20.0%
!!! TCAAATGAATTTCAGTATTT+TGG - chr4_2:24013320-24013339 None:intergenic 20.0%
!! TTATATTAGCTGTTACAATT+AGG - chr4_2:24013852-24013871 None:intergenic 20.0%
!! TAAAGTGTAAAGTTATAGAT+TGG + chr4_2:24013914-24013933 Msa0595150:intron 20.0%
!! TGATATAAAGATTATAGGTA+TGG + chr4_2:24014154-24014173 Msa0595150:intron 20.0%
!! TTTCAACTGAAATAAGTATT+TGG + chr4_2:24014218-24014237 Msa0595150:intron 20.0%
!!! AAGTTGATTTTAACTTATGA+AGG + chr4_2:24014317-24014336 Msa0595150:intron 20.0%
!! TGAAAACAGTACTTATTATT+AGG - chr4_2:24014448-24014467 None:intergenic 20.0%
!! TACACTTGACATAAATATTA+TGG + chr4_2:24014741-24014760 Msa0595150:intron 20.0%
!! GTTAAAATTATATGATTACG+TGG + chr4_2:24012063-24012082 Msa0595150:intron 20.0%
!! ATAAAATGTTTATCCAAACA+GGG - chr4_2:24012113-24012132 None:intergenic 20.0%
!! AATAAAATGTTTATCCAAAC+AGG - chr4_2:24012114-24012133 None:intergenic 20.0%
!! ATCATAAACACTTATCATTA+AGG + chr4_2:24012145-24012164 Msa0595150:intron 20.0%
!!! AAATAAAGTCAAACTGTTTT+AGG + chr4_2:24012188-24012207 Msa0595150:intron 20.0%
!!! ATTATTTTCATAAGCTCTTT+AGG - chr4_2:24012242-24012261 None:intergenic 20.0%
!! AAAGAGCTTATGAAAATAAT+CGG + chr4_2:24012242-24012261 Msa0595150:intron 20.0%
!! ATTATTCAATGTTGTAACAA+GGG - chr4_2:24012531-24012550 None:intergenic 20.0%
!! TATTATTCAATGTTGTAACA+AGG - chr4_2:24012532-24012551 None:intergenic 20.0%
!! TGTTACAACATTGAATAATA+AGG + chr4_2:24012532-24012551 Msa0595150:intron 20.0%
!! TGTTGTATTATTATTGATAC+AGG - chr4_2:24013144-24013163 None:intergenic 20.0%
!! GAGATAATTGCATAATAATA+AGG - chr4_2:24013170-24013189 None:intergenic 20.0%
!! ATGATAATTCTATGGTATTT+GGG - chr4_2:24013192-24013211 None:intergenic 20.0%
!! AAATACCATAGAATTATCAT+CGG + chr4_2:24013192-24013211 Msa0595150:intron 20.0%
!!! CAAATGAATTTCAGTATTTT+GGG - chr4_2:24013319-24013338 None:intergenic 20.0%
!!! TCAAATGAATTTCAGTATTT+TGG - chr4_2:24013320-24013339 None:intergenic 20.0%
!! TTATATTAGCTGTTACAATT+AGG - chr4_2:24013852-24013871 None:intergenic 20.0%
!! TAAAGTGTAAAGTTATAGAT+TGG + chr4_2:24013914-24013933 Msa0595150:intron 20.0%
!! TGATATAAAGATTATAGGTA+TGG + chr4_2:24014154-24014173 Msa0595150:intron 20.0%
!! TTTCAACTGAAATAAGTATT+TGG + chr4_2:24014218-24014237 Msa0595150:intron 20.0%
!!! AAGTTGATTTTAACTTATGA+AGG + chr4_2:24014317-24014336 Msa0595150:intron 20.0%
!! TGAAAACAGTACTTATTATT+AGG - chr4_2:24014448-24014467 None:intergenic 20.0%
!! TACACTTGACATAAATATTA+TGG + chr4_2:24014741-24014760 Msa0595150:intron 20.0%
!!! ATTTTAACACTCGAAATCAA+TGG - chr4_2:24012051-24012070 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr4_2:24012425-24012444 Msa0595150:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr4_2:24012426-24012445 Msa0595150:intron 25.0%
!!! AACTTTTTGAGTTTATCTGT+TGG - chr4_2:24012496-24012515 None:intergenic 25.0%
! CTCAAAAAGTTAATCTAAAC+AGG + chr4_2:24012505-24012524 Msa0595150:intron 25.0%
! ATAGGGTTTGATATATATGT+AGG + chr4_2:24012611-24012630 Msa0595150:intron 25.0%
!!! ATACGCTTTTTGTTAGATAT+AGG + chr4_2:24012650-24012669 Msa0595150:intron 25.0%
! TATTGTAAATAAAGATGCAG+AGG + chr4_2:24013022-24013041 Msa0595150:intron 25.0%
! GATGATAATTCTATGGTATT+TGG - chr4_2:24013193-24013212 None:intergenic 25.0%
! AAATACCGATGATAATTCTA+TGG - chr4_2:24013200-24013219 None:intergenic 25.0%
! TAATATTAGAGTAGATGCAT+AGG - chr4_2:24013455-24013474 None:intergenic 25.0%
! CTATAACTTTACACTTTACT+TGG - chr4_2:24013912-24013931 None:intergenic 25.0%
!!! AGAACTGATTATTTTACCTT+TGG + chr4_2:24014013-24014032 Msa0595150:intron 25.0%
!! GTTTAAAGAAGACAATTTTC+TGG + chr4_2:24014278-24014297 Msa0595150:intron 25.0%
! TTATATCACTTCTCATATGT+AGG + chr4_2:24014365-24014384 Msa0595150:intron 25.0%
! GAGTTATGTAATTAAGAATC+TGG - chr4_2:24014507-24014526 None:intergenic 25.0%
! GTGTAAACATCCAAAATATT+CGG - chr4_2:24014726-24014745 None:intergenic 25.0%
!!! AAGGAAGCATTATTTAGTAT+TGG - chr4_2:24015020-24015039 None:intergenic 25.0%
! TAATTCTGTTTAACATCTGT+AGG + chr4_2:24015068-24015087 Msa0595150:intron 25.0%
! AATTCTGTTTAACATCTGTA+GGG + chr4_2:24015069-24015088 Msa0595150:intron 25.0%
! CTTGATACTGTTAAAGAAAA+CGG + chr4_2:24015447-24015466 Msa0595150:CDS 25.0%
! TTGATACTGTTAAAGAAAAC+GGG + chr4_2:24015448-24015467 Msa0595150:CDS 25.0%
!!! ATTTTAACACTCGAAATCAA+TGG - chr4_2:24012051-24012070 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr4_2:24012425-24012444 Msa0595150:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr4_2:24012426-24012445 Msa0595150:intron 25.0%
!!! AACTTTTTGAGTTTATCTGT+TGG - chr4_2:24012496-24012515 None:intergenic 25.0%
! CTCAAAAAGTTAATCTAAAC+AGG + chr4_2:24012505-24012524 Msa0595150:intron 25.0%
! ATAGGGTTTGATATATATGT+AGG + chr4_2:24012611-24012630 Msa0595150:intron 25.0%
!!! ATACGCTTTTTGTTAGATAT+AGG + chr4_2:24012650-24012669 Msa0595150:intron 25.0%
! TATTGTAAATAAAGATGCAG+AGG + chr4_2:24013022-24013041 Msa0595150:intron 25.0%
! GATGATAATTCTATGGTATT+TGG - chr4_2:24013193-24013212 None:intergenic 25.0%
! AAATACCGATGATAATTCTA+TGG - chr4_2:24013200-24013219 None:intergenic 25.0%
! TAATATTAGAGTAGATGCAT+AGG - chr4_2:24013455-24013474 None:intergenic 25.0%
! CTATAACTTTACACTTTACT+TGG - chr4_2:24013912-24013931 None:intergenic 25.0%
!!! AGAACTGATTATTTTACCTT+TGG + chr4_2:24014013-24014032 Msa0595150:intron 25.0%
!! GTTTAAAGAAGACAATTTTC+TGG + chr4_2:24014278-24014297 Msa0595150:intron 25.0%
! TTATATCACTTCTCATATGT+AGG + chr4_2:24014365-24014384 Msa0595150:intron 25.0%
! GAGTTATGTAATTAAGAATC+TGG - chr4_2:24014507-24014526 None:intergenic 25.0%
! GTGTAAACATCCAAAATATT+CGG - chr4_2:24014726-24014745 None:intergenic 25.0%
!!! AAGGAAGCATTATTTAGTAT+TGG - chr4_2:24015020-24015039 None:intergenic 25.0%
! TAATTCTGTTTAACATCTGT+AGG + chr4_2:24015068-24015087 Msa0595150:intron 25.0%
! AATTCTGTTTAACATCTGTA+GGG + chr4_2:24015069-24015088 Msa0595150:intron 25.0%
! CTTGATACTGTTAAAGAAAA+CGG + chr4_2:24015447-24015466 Msa0595150:CDS 25.0%
! TTGATACTGTTAAAGAAAAC+GGG + chr4_2:24015448-24015467 Msa0595150:CDS 25.0%
AAAATGATAACAAGCTGTGT+TGG + chr4_2:24011727-24011746 Msa0595150:exon 30.0%
GCTTATGAAAATAATCGGTT+TGG + chr4_2:24012247-24012266 Msa0595150:intron 30.0%
!! TGAAAATAATCGGTTTGGTT+TGG + chr4_2:24012252-24012271 Msa0595150:intron 30.0%
AATTCATAAGTTCTCACCAA+CGG + chr4_2:24012315-24012334 Msa0595150:intron 30.0%
TATGAAGATACAATTTCCGT+TGG - chr4_2:24012334-24012353 None:intergenic 30.0%
!!! CTGTTTTTTCATAAACTACC+TGG + chr4_2:24012356-24012375 Msa0595150:intron 30.0%
TAATATTCATAAGCTTCTCC+AGG - chr4_2:24012377-24012396 None:intergenic 30.0%
AGGAGAAATGATAGAAATTG+AGG + chr4_2:24012552-24012571 Msa0595150:intron 30.0%
GGAGAAATGATAGAAATTGA+GGG + chr4_2:24012553-24012572 Msa0595150:intron 30.0%
AATGATAGAAATTGAGGGTA+TGG + chr4_2:24012558-24012577 Msa0595150:intron 30.0%
ATTCTATAACTTATGCCCTT+TGG - chr4_2:24012679-24012698 None:intergenic 30.0%
!! ATATTAAGAGTATTGCTCGA+TGG - chr4_2:24012947-24012966 None:intergenic 30.0%
AAATAAAGATGCAGAGGAAA+AGG + chr4_2:24013028-24013047 Msa0595150:intron 30.0%
AATAAAGATGCAGAGGAAAA+GGG + chr4_2:24013029-24013048 Msa0595150:intron 30.0%
! AAAAGTATGCTGAAAAGTGT+TGG - chr4_2:24013243-24013262 None:intergenic 30.0%
TCAAAACTGCAAAGAAATCT+AGG - chr4_2:24013557-24013576 None:intergenic 30.0%
! CTGATAGTGTTGTCAAATAT+CGG + chr4_2:24013594-24013613 Msa0595150:intron 30.0%
TCATAGTTAACACTGTATAC+TGG + chr4_2:24013716-24013735 Msa0595150:intron 30.0%
TGTGATTATGAGTATGGTTA+GGG - chr4_2:24013878-24013897 None:intergenic 30.0%
ATGTGATTATGAGTATGGTT+AGG - chr4_2:24013879-24013898 None:intergenic 30.0%
GAGTTATGTGATTATGAGTA+TGG - chr4_2:24013884-24013903 None:intergenic 30.0%
AGAAGAAAAATGAAGTCCAA+AGG - chr4_2:24014032-24014051 None:intergenic 30.0%
! ATTGGCACTTAACTTTTCAT+AGG + chr4_2:24014089-24014108 Msa0595150:intron 30.0%
! TTGGCACTTAACTTTTCATA+GGG + chr4_2:24014090-24014109 Msa0595150:intron 30.0%
! ATGGTGAAATCTGAACATTT+TGG + chr4_2:24014120-24014139 Msa0595150:intron 30.0%
ATTATAGGTATGGTCCAATT+TGG + chr4_2:24014164-24014183 Msa0595150:intron 30.0%
TCCAATTTGGATAAACTTCT+CGG + chr4_2:24014177-24014196 Msa0595150:intron 30.0%
CATTTGTGACAATATCATGT+GGG + chr4_2:24014568-24014587 Msa0595150:intron 30.0%
TTGTCTGTATTTATGAGAAC+TGG + chr4_2:24014610-24014629 Msa0595150:intron 30.0%
TATGAGAACTGGTTAATCTT+TGG + chr4_2:24014621-24014640 Msa0595150:intron 30.0%
ATAAATATTATGGACCGCTT+TGG + chr4_2:24014751-24014770 Msa0595150:intron 30.0%
TAAATATTATGGACCGCTTT+GGG + chr4_2:24014752-24014771 Msa0595150:intron 30.0%
TTCTATAAGATAACCCAAAG+CGG - chr4_2:24014768-24014787 None:intergenic 30.0%
TAGAAGTTCTTCAACTGAAA+TGG + chr4_2:24014783-24014802 Msa0595150:intron 30.0%
AGAAGTTCTTCAACTGAAAT+GGG + chr4_2:24014784-24014803 Msa0595150:intron 30.0%
!! ACACATTGATTTAACGTATG+AGG + chr4_2:24014884-24014903 Msa0595150:intron 30.0%
TCAATCCTTTCATTCTTTCT+CGG - chr4_2:24015408-24015427 None:intergenic 30.0%
AGAAAGAATGAAAGGATTGA+AGG + chr4_2:24015408-24015427 Msa0595150:CDS 30.0%
AAAATGATAACAAGCTGTGT+TGG + chr4_2:24011727-24011746 Msa0595150:exon 30.0%
GCTTATGAAAATAATCGGTT+TGG + chr4_2:24012247-24012266 Msa0595150:intron 30.0%
!! TGAAAATAATCGGTTTGGTT+TGG + chr4_2:24012252-24012271 Msa0595150:intron 30.0%
AATTCATAAGTTCTCACCAA+CGG + chr4_2:24012315-24012334 Msa0595150:intron 30.0%
TATGAAGATACAATTTCCGT+TGG - chr4_2:24012334-24012353 None:intergenic 30.0%
!!! CTGTTTTTTCATAAACTACC+TGG + chr4_2:24012356-24012375 Msa0595150:intron 30.0%
TAATATTCATAAGCTTCTCC+AGG - chr4_2:24012377-24012396 None:intergenic 30.0%
AGGAGAAATGATAGAAATTG+AGG + chr4_2:24012552-24012571 Msa0595150:intron 30.0%
GGAGAAATGATAGAAATTGA+GGG + chr4_2:24012553-24012572 Msa0595150:intron 30.0%
AATGATAGAAATTGAGGGTA+TGG + chr4_2:24012558-24012577 Msa0595150:intron 30.0%
ATTCTATAACTTATGCCCTT+TGG - chr4_2:24012679-24012698 None:intergenic 30.0%
!! ATATTAAGAGTATTGCTCGA+TGG - chr4_2:24012947-24012966 None:intergenic 30.0%
AAATAAAGATGCAGAGGAAA+AGG + chr4_2:24013028-24013047 Msa0595150:intron 30.0%
AATAAAGATGCAGAGGAAAA+GGG + chr4_2:24013029-24013048 Msa0595150:intron 30.0%
! AAAAGTATGCTGAAAAGTGT+TGG - chr4_2:24013243-24013262 None:intergenic 30.0%
TCAAAACTGCAAAGAAATCT+AGG - chr4_2:24013557-24013576 None:intergenic 30.0%
! CTGATAGTGTTGTCAAATAT+CGG + chr4_2:24013594-24013613 Msa0595150:intron 30.0%
TCATAGTTAACACTGTATAC+TGG + chr4_2:24013716-24013735 Msa0595150:intron 30.0%
TGTGATTATGAGTATGGTTA+GGG - chr4_2:24013878-24013897 None:intergenic 30.0%
ATGTGATTATGAGTATGGTT+AGG - chr4_2:24013879-24013898 None:intergenic 30.0%
GAGTTATGTGATTATGAGTA+TGG - chr4_2:24013884-24013903 None:intergenic 30.0%
AGAAGAAAAATGAAGTCCAA+AGG - chr4_2:24014032-24014051 None:intergenic 30.0%
! ATTGGCACTTAACTTTTCAT+AGG + chr4_2:24014089-24014108 Msa0595150:intron 30.0%
! TTGGCACTTAACTTTTCATA+GGG + chr4_2:24014090-24014109 Msa0595150:intron 30.0%
! ATGGTGAAATCTGAACATTT+TGG + chr4_2:24014120-24014139 Msa0595150:intron 30.0%
ATTATAGGTATGGTCCAATT+TGG + chr4_2:24014164-24014183 Msa0595150:intron 30.0%
TCCAATTTGGATAAACTTCT+CGG + chr4_2:24014177-24014196 Msa0595150:intron 30.0%
CATTTGTGACAATATCATGT+GGG + chr4_2:24014568-24014587 Msa0595150:intron 30.0%
TTGTCTGTATTTATGAGAAC+TGG + chr4_2:24014610-24014629 Msa0595150:intron 30.0%
TATGAGAACTGGTTAATCTT+TGG + chr4_2:24014621-24014640 Msa0595150:intron 30.0%
ATAAATATTATGGACCGCTT+TGG + chr4_2:24014751-24014770 Msa0595150:intron 30.0%
TAAATATTATGGACCGCTTT+GGG + chr4_2:24014752-24014771 Msa0595150:intron 30.0%
TTCTATAAGATAACCCAAAG+CGG - chr4_2:24014768-24014787 None:intergenic 30.0%
TAGAAGTTCTTCAACTGAAA+TGG + chr4_2:24014783-24014802 Msa0595150:intron 30.0%
AGAAGTTCTTCAACTGAAAT+GGG + chr4_2:24014784-24014803 Msa0595150:intron 30.0%
!! ACACATTGATTTAACGTATG+AGG + chr4_2:24014884-24014903 Msa0595150:intron 30.0%
TCAATCCTTTCATTCTTTCT+CGG - chr4_2:24015408-24015427 None:intergenic 30.0%
AGAAAGAATGAAAGGATTGA+AGG + chr4_2:24015408-24015427 Msa0595150:CDS 30.0%
ATGATTACGTGGTTGAAATG+TGG + chr4_2:24012074-24012093 Msa0595150:intron 35.0%
AAACTCATTAAGACCCTGTT+TGG + chr4_2:24012097-24012116 Msa0595150:intron 35.0%
AAGCACTTGTGACATTGTTT+GGG - chr4_2:24012470-24012489 None:intergenic 35.0%
TAAGCACTTGTGACATTGTT+TGG - chr4_2:24012471-24012490 None:intergenic 35.0%
TGTTAGATATAGGACTCCAA+AGG + chr4_2:24012660-24012679 Msa0595150:intron 35.0%
GTTAGATATAGGACTCCAAA+GGG + chr4_2:24012661-24012680 Msa0595150:intron 35.0%
TTAAAAAAGACCCTCAAGTG+TGG + chr4_2:24013472-24013491 Msa0595150:intron 35.0%
CTGTATTCCTTTAGCAAACA+TGG - chr4_2:24013499-24013518 None:intergenic 35.0%
! CATGTTTGCTAAAGGAATAC+AGG + chr4_2:24013497-24013516 Msa0595150:intron 35.0%
! AGATATCGGTGGCAAATTTT+TGG + chr4_2:24013635-24013654 Msa0595150:intron 35.0%
!! AAATTTTTGGAAAACCGCCA+CGG + chr4_2:24013648-24013667 Msa0595150:intron 35.0%
AAAGCCAAAATTCCGACATA+TGG - chr4_2:24013676-24013695 None:intergenic 35.0%
TTAACACTGTATACTGGTAG+CGG + chr4_2:24013722-24013741 Msa0595150:intron 35.0%
! CTACGAGTAACTACTCATTT+TGG - chr4_2:24013764-24013783 None:intergenic 35.0%
ATACATACCAGAATGATGAC+AGG + chr4_2:24013820-24013839 Msa0595150:intron 35.0%
GTAAATACCTGTCATCATTC+TGG - chr4_2:24013830-24013849 None:intergenic 35.0%
! TGGCACTTAACTTTTCATAG+GGG + chr4_2:24014091-24014110 Msa0595150:intron 35.0%
! TAACTCTGTCTCGTGAATTT+TGG + chr4_2:24014521-24014540 Msa0595150:intron 35.0%
GCATTTGTGACAATATCATG+TGG + chr4_2:24014567-24014586 Msa0595150:intron 35.0%
ATATCACTTTGCTTGTTCCA+CGG - chr4_2:24015251-24015270 None:intergenic 35.0%
AAGAGAGTTTCGAAGATCTT+TGG - chr4_2:24015292-24015311 None:intergenic 35.0%
AAGCTTGTAGAGTAATTGGA+AGG + chr4_2:24015331-24015350 Msa0595150:CDS 35.0%
! GTTTGCTCCTTGATGTTTTA+TGG + chr4_2:24015586-24015605 Msa0595150:three_prime_UTR 35.0%
GATGTGTCCATAAAACATCA+AGG - chr4_2:24015596-24015615 None:intergenic 35.0%
TTGTGTTTGTTCTCTCTTCT+CGG + chr4_2:24015654-24015673 Msa0595150:three_prime_UTR 35.0%
ATTGAGTATACCACTAAGTG+TGG - chr4_2:24015689-24015708 None:intergenic 35.0%
ACACTTAGTGGTATACTCAA+TGG + chr4_2:24015688-24015707 Msa0595150:three_prime_UTR 35.0%
GTGGTATACTCAATGGTATA+CGG + chr4_2:24015695-24015714 Msa0595150:three_prime_UTR 35.0%
ATGATTACGTGGTTGAAATG+TGG + chr4_2:24012074-24012093 Msa0595150:intron 35.0%
AAACTCATTAAGACCCTGTT+TGG + chr4_2:24012097-24012116 Msa0595150:intron 35.0%
AAGCACTTGTGACATTGTTT+GGG - chr4_2:24012470-24012489 None:intergenic 35.0%
TAAGCACTTGTGACATTGTT+TGG - chr4_2:24012471-24012490 None:intergenic 35.0%
TGTTAGATATAGGACTCCAA+AGG + chr4_2:24012660-24012679 Msa0595150:intron 35.0%
GTTAGATATAGGACTCCAAA+GGG + chr4_2:24012661-24012680 Msa0595150:intron 35.0%
TTAAAAAAGACCCTCAAGTG+TGG + chr4_2:24013472-24013491 Msa0595150:intron 35.0%
CTGTATTCCTTTAGCAAACA+TGG - chr4_2:24013499-24013518 None:intergenic 35.0%
! CATGTTTGCTAAAGGAATAC+AGG + chr4_2:24013497-24013516 Msa0595150:intron 35.0%
! AGATATCGGTGGCAAATTTT+TGG + chr4_2:24013635-24013654 Msa0595150:intron 35.0%
!! AAATTTTTGGAAAACCGCCA+CGG + chr4_2:24013648-24013667 Msa0595150:intron 35.0%
AAAGCCAAAATTCCGACATA+TGG - chr4_2:24013676-24013695 None:intergenic 35.0%
TTAACACTGTATACTGGTAG+CGG + chr4_2:24013722-24013741 Msa0595150:intron 35.0%
! CTACGAGTAACTACTCATTT+TGG - chr4_2:24013764-24013783 None:intergenic 35.0%
ATACATACCAGAATGATGAC+AGG + chr4_2:24013820-24013839 Msa0595150:intron 35.0%
GTAAATACCTGTCATCATTC+TGG - chr4_2:24013830-24013849 None:intergenic 35.0%
! TGGCACTTAACTTTTCATAG+GGG + chr4_2:24014091-24014110 Msa0595150:intron 35.0%
! TAACTCTGTCTCGTGAATTT+TGG + chr4_2:24014521-24014540 Msa0595150:intron 35.0%
GCATTTGTGACAATATCATG+TGG + chr4_2:24014567-24014586 Msa0595150:intron 35.0%
ATATCACTTTGCTTGTTCCA+CGG - chr4_2:24015251-24015270 None:intergenic 35.0%
AAGAGAGTTTCGAAGATCTT+TGG - chr4_2:24015292-24015311 None:intergenic 35.0%
AAGCTTGTAGAGTAATTGGA+AGG + chr4_2:24015331-24015350 Msa0595150:CDS 35.0%
! GTTTGCTCCTTGATGTTTTA+TGG + chr4_2:24015586-24015605 Msa0595150:three_prime_UTR 35.0%
GATGTGTCCATAAAACATCA+AGG - chr4_2:24015596-24015615 None:intergenic 35.0%
TTGTGTTTGTTCTCTCTTCT+CGG + chr4_2:24015654-24015673 Msa0595150:three_prime_UTR 35.0%
ATTGAGTATACCACTAAGTG+TGG - chr4_2:24015689-24015708 None:intergenic 35.0%
ACACTTAGTGGTATACTCAA+TGG + chr4_2:24015688-24015707 Msa0595150:three_prime_UTR 35.0%
GTGGTATACTCAATGGTATA+CGG + chr4_2:24015695-24015714 Msa0595150:three_prime_UTR 35.0%
!! TTAGTTTTCTGTAGCGGCTA+AGG + chr4_2:24011669-24011688 Msa0595150:five_prime_UTR 40.0%
! TGATAACAAGCTGTGTTGGT+TGG + chr4_2:24011731-24011750 Msa0595150:CDS 40.0%
!! GATAACAAGCTGTGTTGGTT+GGG + chr4_2:24011732-24011751 Msa0595150:CDS 40.0%
TTGGGATTGTTGGAGTTTGA+GGG - chr4_2:24011901-24011920 None:intergenic 40.0%
! TTTGGGATTGTTGGAGTTTG+AGG - chr4_2:24011902-24011921 None:intergenic 40.0%
AAGAGATGGGAACGTACTTT+GGG - chr4_2:24011919-24011938 None:intergenic 40.0%
AAAGAGATGGGAACGTACTT+TGG - chr4_2:24011920-24011939 None:intergenic 40.0%
ACATTGTTTGGGAGAACTCA+TGG - chr4_2:24012459-24012478 None:intergenic 40.0%
CTCTAACCATCCATGTATTC+CGG - chr4_2:24012821-24012840 None:intergenic 40.0%
AATACATAACTCCCACTTGC+CGG + chr4_2:24012871-24012890 Msa0595150:intron 40.0%
AAAAAGCCACCCTTGTATTC+CGG - chr4_2:24012893-24012912 None:intergenic 40.0%
GAATTGGGTATCTTGTAGGT+GGG + chr4_2:24013055-24013074 Msa0595150:intron 40.0%
! AGTAACCAACCTCTAGGAAT+TGG - chr4_2:24013105-24013124 None:intergenic 40.0%
CAGAAAAGTAACCAACCTCT+AGG - chr4_2:24013111-24013130 None:intergenic 40.0%
!! TGCTGAAAAGTGTTGGATAC+TGG - chr4_2:24013236-24013255 None:intergenic 40.0%
ATGCGTCCTTCGAAATTATG+CGG + chr4_2:24013285-24013304 Msa0595150:intron 40.0%
GCTAAAGGAATACAGGTTTG+AGG + chr4_2:24013504-24013523 Msa0595150:intron 40.0%
! CTTTTCATAGGGGATGTGAA+TGG + chr4_2:24014101-24014120 Msa0595150:intron 40.0%
GCCGAGAAGTTTATCCAAAT+TGG - chr4_2:24014181-24014200 None:intergenic 40.0%
ACAGATACCTGAATGATAGC+AGG + chr4_2:24014416-24014435 Msa0595150:intron 40.0%
TTAACGTATGAGGCAGATGT+TGG + chr4_2:24014894-24014913 Msa0595150:intron 40.0%
ATTTGAGTCAGCACAAGAGA+AGG - chr4_2:24015039-24015058 None:intergenic 40.0%
ACAAGCTTCAGGATCTATCA+AGG - chr4_2:24015319-24015338 None:intergenic 40.0%
CCAATTACTCTACAAGCTTC+AGG - chr4_2:24015330-24015349 None:intergenic 40.0%
CCTGAAGCTTGTAGAGTAAT+TGG + chr4_2:24015327-24015346 Msa0595150:CDS 40.0%
GGAAGCTGATGTATATGCAA+TGG + chr4_2:24015374-24015393 Msa0595150:CDS 40.0%
ACGAACCGAGAAAGAATGAA+AGG + chr4_2:24015400-24015419 Msa0595150:CDS 40.0%
TGAAAGGATTGAAGGTAGAC+TGG + chr4_2:24015416-24015435 Msa0595150:CDS 40.0%
GAAAGGATTGAAGGTAGACT+GGG + chr4_2:24015417-24015436 Msa0595150:CDS 40.0%
ACACATCTGAACACAGACAA+TGG + chr4_2:24015609-24015628 Msa0595150:three_prime_UTR 40.0%
TGTGTTTGTTCTCTCTTCTC+GGG + chr4_2:24015655-24015674 Msa0595150:three_prime_UTR 40.0%
!! TTAGTTTTCTGTAGCGGCTA+AGG + chr4_2:24011669-24011688 Msa0595150:five_prime_UTR 40.0%
! TGATAACAAGCTGTGTTGGT+TGG + chr4_2:24011731-24011750 Msa0595150:CDS 40.0%
!! GATAACAAGCTGTGTTGGTT+GGG + chr4_2:24011732-24011751 Msa0595150:CDS 40.0%
TTGGGATTGTTGGAGTTTGA+GGG - chr4_2:24011901-24011920 None:intergenic 40.0%
! TTTGGGATTGTTGGAGTTTG+AGG - chr4_2:24011902-24011921 None:intergenic 40.0%
AAGAGATGGGAACGTACTTT+GGG - chr4_2:24011919-24011938 None:intergenic 40.0%
AAAGAGATGGGAACGTACTT+TGG - chr4_2:24011920-24011939 None:intergenic 40.0%
ACATTGTTTGGGAGAACTCA+TGG - chr4_2:24012459-24012478 None:intergenic 40.0%
CTCTAACCATCCATGTATTC+CGG - chr4_2:24012821-24012840 None:intergenic 40.0%
AATACATAACTCCCACTTGC+CGG + chr4_2:24012871-24012890 Msa0595150:intron 40.0%
AAAAAGCCACCCTTGTATTC+CGG - chr4_2:24012893-24012912 None:intergenic 40.0%
GAATTGGGTATCTTGTAGGT+GGG + chr4_2:24013055-24013074 Msa0595150:intron 40.0%
! AGTAACCAACCTCTAGGAAT+TGG - chr4_2:24013105-24013124 None:intergenic 40.0%
CAGAAAAGTAACCAACCTCT+AGG - chr4_2:24013111-24013130 None:intergenic 40.0%
!! TGCTGAAAAGTGTTGGATAC+TGG - chr4_2:24013236-24013255 None:intergenic 40.0%
ATGCGTCCTTCGAAATTATG+CGG + chr4_2:24013285-24013304 Msa0595150:intron 40.0%
GCTAAAGGAATACAGGTTTG+AGG + chr4_2:24013504-24013523 Msa0595150:intron 40.0%
! CTTTTCATAGGGGATGTGAA+TGG + chr4_2:24014101-24014120 Msa0595150:intron 40.0%
GCCGAGAAGTTTATCCAAAT+TGG - chr4_2:24014181-24014200 None:intergenic 40.0%
ACAGATACCTGAATGATAGC+AGG + chr4_2:24014416-24014435 Msa0595150:intron 40.0%
TTAACGTATGAGGCAGATGT+TGG + chr4_2:24014894-24014913 Msa0595150:intron 40.0%
ATTTGAGTCAGCACAAGAGA+AGG - chr4_2:24015039-24015058 None:intergenic 40.0%
ACAAGCTTCAGGATCTATCA+AGG - chr4_2:24015319-24015338 None:intergenic 40.0%
CCAATTACTCTACAAGCTTC+AGG - chr4_2:24015330-24015349 None:intergenic 40.0%
CCTGAAGCTTGTAGAGTAAT+TGG + chr4_2:24015327-24015346 Msa0595150:CDS 40.0%
GGAAGCTGATGTATATGCAA+TGG + chr4_2:24015374-24015393 Msa0595150:CDS 40.0%
ACGAACCGAGAAAGAATGAA+AGG + chr4_2:24015400-24015419 Msa0595150:CDS 40.0%
TGAAAGGATTGAAGGTAGAC+TGG + chr4_2:24015416-24015435 Msa0595150:CDS 40.0%
GAAAGGATTGAAGGTAGACT+GGG + chr4_2:24015417-24015436 Msa0595150:CDS 40.0%
ACACATCTGAACACAGACAA+TGG + chr4_2:24015609-24015628 Msa0595150:three_prime_UTR 40.0%
TGTGTTTGTTCTCTCTTCTC+GGG + chr4_2:24015655-24015674 Msa0595150:three_prime_UTR 40.0%
GAGATGGAGATGATAGGAGT+TGG - chr4_2:24011804-24011823 None:intergenic 45.0%
GAGATGGAGATGGAGATGAT+AGG - chr4_2:24011810-24011829 None:intergenic 45.0%
GAGATGGAGATGGGTAAAGA+AGG - chr4_2:24011862-24011881 None:intergenic 45.0%
GTGGTTGTTGAGATGGAGAT+GGG - chr4_2:24011871-24011890 None:intergenic 45.0%
AGTGGTTGTTGAGATGGAGA+TGG - chr4_2:24011872-24011891 None:intergenic 45.0%
AGAGAGAGTGGTTGTTGAGA+TGG - chr4_2:24011878-24011897 None:intergenic 45.0%
!! GGAACGTACTTTGGGATTGT+TGG - chr4_2:24011911-24011930 None:intergenic 45.0%
ATCACATAACTCCCACTTGC+CGG + chr4_2:24012799-24012818 Msa0595150:intron 45.0%
ATCCATGTATTCCGGCAAGT+GGG - chr4_2:24012813-24012832 None:intergenic 45.0%
AAAGATGCAGAGGAAAAGGG+AGG + chr4_2:24013032-24013051 Msa0595150:intron 45.0%
AAGATGCAGAGGAAAAGGGA+GGG + chr4_2:24013033-24013052 Msa0595150:intron 45.0%
AGAGGAAAAGGGAGGGAATT+GGG + chr4_2:24013040-24013059 Msa0595150:intron 45.0%
GAGGGAATTGGGTATCTTGT+AGG + chr4_2:24013051-24013070 Msa0595150:intron 45.0%
GGAATTGGGTATCTTGTAGG+TGG + chr4_2:24013054-24013073 Msa0595150:intron 45.0%
!! ATCTTGTAGGTGGGTTGGTT+TGG + chr4_2:24013064-24013083 Msa0595150:intron 45.0%
!! TCTTGTAGGTGGGTTGGTTT+GGG + chr4_2:24013065-24013084 Msa0595150:intron 45.0%
TGCGTCCTTCGAAATTATGC+GGG + chr4_2:24013286-24013305 Msa0595150:intron 45.0%
CAAACATGGTCCACACTTGA+GGG - chr4_2:24013485-24013504 None:intergenic 45.0%
! GTGTGGACCATGTTTGCTAA+AGG + chr4_2:24013489-24013508 Msa0595150:intron 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr4_2:24013600-24013619 Msa0595150:intron 45.0%
!! GGTGCCATATGTCGGAATTT+TGG + chr4_2:24013669-24013688 Msa0595150:intron 45.0%
CTATGACAGATTGCAGACCA+TGG - chr4_2:24013702-24013721 None:intergenic 45.0%
GTACAGACCTGCTATCATTC+AGG - chr4_2:24014426-24014445 None:intergenic 45.0%
!!! TTGGTCACTTTTTCCTTCCG+TGG + chr4_2:24014696-24014715 Msa0595150:intron 45.0%
CCAAAATATTCGGATCGCCA+CGG - chr4_2:24014716-24014735 None:intergenic 45.0%
GTACTTTCATTCGAGCTGCT+TGG + chr4_2:24015091-24015110 Msa0595150:CDS 45.0%
AAGCTGAAAAGAAACCCAGC+AGG + chr4_2:24015133-24015152 Msa0595150:CDS 45.0%
AGAAACCCAGCAGGAAATCA+TGG + chr4_2:24015142-24015161 Msa0595150:CDS 45.0%
TCGAAGATCTTTGGCGTTTG+TGG - chr4_2:24015283-24015302 None:intergenic 45.0%
GCTTCAGGATCTATCAAGGA+TGG - chr4_2:24015315-24015334 None:intergenic 45.0%
GCTTATAGCAGAGCGATCAA+AGG + chr4_2:24015353-24015372 Msa0595150:CDS 45.0%
GGATCAATGTCCACACTTAG+TGG + chr4_2:24015676-24015695 Msa0595150:three_prime_UTR 45.0%
GAGATGGAGATGATAGGAGT+TGG - chr4_2:24011804-24011823 None:intergenic 45.0%
GAGATGGAGATGGAGATGAT+AGG - chr4_2:24011810-24011829 None:intergenic 45.0%
GAGATGGAGATGGGTAAAGA+AGG - chr4_2:24011862-24011881 None:intergenic 45.0%
GTGGTTGTTGAGATGGAGAT+GGG - chr4_2:24011871-24011890 None:intergenic 45.0%
AGTGGTTGTTGAGATGGAGA+TGG - chr4_2:24011872-24011891 None:intergenic 45.0%
AGAGAGAGTGGTTGTTGAGA+TGG - chr4_2:24011878-24011897 None:intergenic 45.0%
!! GGAACGTACTTTGGGATTGT+TGG - chr4_2:24011911-24011930 None:intergenic 45.0%
ATCACATAACTCCCACTTGC+CGG + chr4_2:24012799-24012818 Msa0595150:intron 45.0%
ATCCATGTATTCCGGCAAGT+GGG - chr4_2:24012813-24012832 None:intergenic 45.0%
AAAGATGCAGAGGAAAAGGG+AGG + chr4_2:24013032-24013051 Msa0595150:intron 45.0%
AAGATGCAGAGGAAAAGGGA+GGG + chr4_2:24013033-24013052 Msa0595150:intron 45.0%
AGAGGAAAAGGGAGGGAATT+GGG + chr4_2:24013040-24013059 Msa0595150:intron 45.0%
GAGGGAATTGGGTATCTTGT+AGG + chr4_2:24013051-24013070 Msa0595150:intron 45.0%
GGAATTGGGTATCTTGTAGG+TGG + chr4_2:24013054-24013073 Msa0595150:intron 45.0%
!! ATCTTGTAGGTGGGTTGGTT+TGG + chr4_2:24013064-24013083 Msa0595150:intron 45.0%
!! TCTTGTAGGTGGGTTGGTTT+GGG + chr4_2:24013065-24013084 Msa0595150:intron 45.0%
TGCGTCCTTCGAAATTATGC+GGG + chr4_2:24013286-24013305 Msa0595150:intron 45.0%
CAAACATGGTCCACACTTGA+GGG - chr4_2:24013485-24013504 None:intergenic 45.0%
! GTGTGGACCATGTTTGCTAA+AGG + chr4_2:24013489-24013508 Msa0595150:intron 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr4_2:24013600-24013619 Msa0595150:intron 45.0%
!! GGTGCCATATGTCGGAATTT+TGG + chr4_2:24013669-24013688 Msa0595150:intron 45.0%
CTATGACAGATTGCAGACCA+TGG - chr4_2:24013702-24013721 None:intergenic 45.0%
GTACAGACCTGCTATCATTC+AGG - chr4_2:24014426-24014445 None:intergenic 45.0%
!!! TTGGTCACTTTTTCCTTCCG+TGG + chr4_2:24014696-24014715 Msa0595150:intron 45.0%
CCAAAATATTCGGATCGCCA+CGG - chr4_2:24014716-24014735 None:intergenic 45.0%
GTACTTTCATTCGAGCTGCT+TGG + chr4_2:24015091-24015110 Msa0595150:CDS 45.0%
AAGCTGAAAAGAAACCCAGC+AGG + chr4_2:24015133-24015152 Msa0595150:CDS 45.0%
AGAAACCCAGCAGGAAATCA+TGG + chr4_2:24015142-24015161 Msa0595150:CDS 45.0%
TCGAAGATCTTTGGCGTTTG+TGG - chr4_2:24015283-24015302 None:intergenic 45.0%
GCTTCAGGATCTATCAAGGA+TGG - chr4_2:24015315-24015334 None:intergenic 45.0%
GCTTATAGCAGAGCGATCAA+AGG + chr4_2:24015353-24015372 Msa0595150:CDS 45.0%
GGATCAATGTCCACACTTAG+TGG + chr4_2:24015676-24015695 Msa0595150:three_prime_UTR 45.0%
TCTGTAGCGGCTAAGGAAGA+AGG + chr4_2:24011676-24011695 Msa0595150:five_prime_UTR 50.0%
CGGCTAAGGAAGAAGGAAGA+AGG + chr4_2:24011683-24011702 Msa0595150:five_prime_UTR 50.0%
TCTGTTGCGACACTAAGCTG+CGG + chr4_2:24011773-24011792 Msa0595150:CDS 50.0%
AACGAAAGCGAAGAGCGAGA+TGG - chr4_2:24011826-24011845 None:intergenic 50.0%
TTGGGAGAACTCATGGCATG+TGG - chr4_2:24012452-24012471 None:intergenic 50.0%
CATCCATGTATTCCGGCAAG+TGG - chr4_2:24012814-24012833 None:intergenic 50.0%
CACTTGCCGGAATACATGGA+TGG + chr4_2:24012812-24012831 Msa0595150:intron 50.0%
TCCCACTTGCCGGAATACAA+GGG + chr4_2:24012881-24012900 Msa0595150:intron 50.0%
ACCCTTGTATTCCGGCAAGT+GGG - chr4_2:24012885-24012904 None:intergenic 50.0%
CAGAGGAAAAGGGAGGGAAT+TGG + chr4_2:24013039-24013058 Msa0595150:intron 50.0%
TGGGTATCTTGTAGGTGGGT+TGG + chr4_2:24013059-24013078 Msa0595150:intron 50.0%
CTAGGCTCTCCAATTCCTAG+AGG + chr4_2:24013093-24013112 Msa0595150:intron 50.0%
GCTCTCCAATTCCTAGAGGT+TGG + chr4_2:24013097-24013116 Msa0595150:intron 50.0%
CGAGTCCCGCATAATTTCGA+AGG - chr4_2:24013294-24013313 None:intergenic 50.0%
GCAAACATGGTCCACACTTG+AGG - chr4_2:24013486-24013505 None:intergenic 50.0%
TATCTGCCATAGCGCAACCA+TGG - chr4_2:24013620-24013639 None:intergenic 50.0%
GGTTGCGCTATGGCAGATAT+CGG + chr4_2:24013621-24013640 Msa0595150:intron 50.0%
AATTCCGACATATGGCACCG+TGG - chr4_2:24013668-24013687 None:intergenic 50.0%
!!! GGAATTTTGGCTTTCCGCCA+TGG + chr4_2:24013682-24013701 Msa0595150:intron 50.0%
TGACAGATTGCAGACCATGG+CGG - chr4_2:24013699-24013718 None:intergenic 50.0%
! GGTAGCGGCTCACACATTTA+AGG + chr4_2:24013737-24013756 Msa0595150:intron 50.0%
AATATTCGGATCGCCACGGA+AGG - chr4_2:24014712-24014731 None:intergenic 50.0%
! CCGTGGCGATCCGAATATTT+TGG + chr4_2:24014713-24014732 Msa0595150:intron 50.0%
CGCTTCCATGATTTCCTGCT+GGG - chr4_2:24015150-24015169 None:intergenic 50.0%
CCAGCAGGAAATCATGGAAG+CGG + chr4_2:24015148-24015167 Msa0595150:CDS 50.0%
TCTGTAGCGGCTAAGGAAGA+AGG + chr4_2:24011676-24011695 Msa0595150:five_prime_UTR 50.0%
CGGCTAAGGAAGAAGGAAGA+AGG + chr4_2:24011683-24011702 Msa0595150:five_prime_UTR 50.0%
TCTGTTGCGACACTAAGCTG+CGG + chr4_2:24011773-24011792 Msa0595150:CDS 50.0%
AACGAAAGCGAAGAGCGAGA+TGG - chr4_2:24011826-24011845 None:intergenic 50.0%
TTGGGAGAACTCATGGCATG+TGG - chr4_2:24012452-24012471 None:intergenic 50.0%
CATCCATGTATTCCGGCAAG+TGG - chr4_2:24012814-24012833 None:intergenic 50.0%
CACTTGCCGGAATACATGGA+TGG + chr4_2:24012812-24012831 Msa0595150:intron 50.0%
TCCCACTTGCCGGAATACAA+GGG + chr4_2:24012881-24012900 Msa0595150:intron 50.0%
ACCCTTGTATTCCGGCAAGT+GGG - chr4_2:24012885-24012904 None:intergenic 50.0%
CAGAGGAAAAGGGAGGGAAT+TGG + chr4_2:24013039-24013058 Msa0595150:intron 50.0%
TGGGTATCTTGTAGGTGGGT+TGG + chr4_2:24013059-24013078 Msa0595150:intron 50.0%
CTAGGCTCTCCAATTCCTAG+AGG + chr4_2:24013093-24013112 Msa0595150:intron 50.0%
GCTCTCCAATTCCTAGAGGT+TGG + chr4_2:24013097-24013116 Msa0595150:intron 50.0%
CGAGTCCCGCATAATTTCGA+AGG - chr4_2:24013294-24013313 None:intergenic 50.0%
GCAAACATGGTCCACACTTG+AGG - chr4_2:24013486-24013505 None:intergenic 50.0%
TATCTGCCATAGCGCAACCA+TGG - chr4_2:24013620-24013639 None:intergenic 50.0%
GGTTGCGCTATGGCAGATAT+CGG + chr4_2:24013621-24013640 Msa0595150:intron 50.0%
AATTCCGACATATGGCACCG+TGG - chr4_2:24013668-24013687 None:intergenic 50.0%
!!! GGAATTTTGGCTTTCCGCCA+TGG + chr4_2:24013682-24013701 Msa0595150:intron 50.0%
TGACAGATTGCAGACCATGG+CGG - chr4_2:24013699-24013718 None:intergenic 50.0%
! GGTAGCGGCTCACACATTTA+AGG + chr4_2:24013737-24013756 Msa0595150:intron 50.0%
AATATTCGGATCGCCACGGA+AGG - chr4_2:24014712-24014731 None:intergenic 50.0%
! CCGTGGCGATCCGAATATTT+TGG + chr4_2:24014713-24014732 Msa0595150:intron 50.0%
CGCTTCCATGATTTCCTGCT+GGG - chr4_2:24015150-24015169 None:intergenic 50.0%
CCAGCAGGAAATCATGGAAG+CGG + chr4_2:24015148-24015167 Msa0595150:CDS 50.0%
AGCGAAGAGCGAGATGGAGA+TGG - chr4_2:24011820-24011839 None:intergenic 55.0%
GGAGTTTGAGGGAGAGAGAG+TGG - chr4_2:24011890-24011909 None:intergenic 55.0%
CTCCCACTTGCCGGAATACA+TGG + chr4_2:24012808-24012827 Msa0595150:intron 55.0%
CTCCCACTTGCCGGAATACA+AGG + chr4_2:24012808-24012827 Msa0595150:intron 55.0%
CACCCTTGTATTCCGGCAAG+TGG - chr4_2:24012886-24012905 None:intergenic 55.0%
CACTTGCCGGAATACAAGGG+TGG + chr4_2:24012884-24012903 Msa0595150:intron 55.0%
!! GGGTTGGTTTGGGAGAGACT+AGG + chr4_2:24013075-24013094 Msa0595150:intron 55.0%
TATCGGCCATGGTTGCGCTA+TGG + chr4_2:24013611-24013630 Msa0595150:intron 55.0%
TGCGCTATGGCAGATATCGG+TGG + chr4_2:24013624-24013643 Msa0595150:intron 55.0%
GCTTGGACTCGAAGATCTCG+AGG + chr4_2:24015108-24015127 Msa0595150:CDS 55.0%
CCGCTTCCATGATTTCCTGC+TGG - chr4_2:24015151-24015170 None:intergenic 55.0%
AGCGAAGAGCGAGATGGAGA+TGG - chr4_2:24011820-24011839 None:intergenic 55.0%
GGAGTTTGAGGGAGAGAGAG+TGG - chr4_2:24011890-24011909 None:intergenic 55.0%
CTCCCACTTGCCGGAATACA+TGG + chr4_2:24012808-24012827 Msa0595150:intron 55.0%
CTCCCACTTGCCGGAATACA+AGG + chr4_2:24012808-24012827 Msa0595150:intron 55.0%
CACCCTTGTATTCCGGCAAG+TGG - chr4_2:24012886-24012905 None:intergenic 55.0%
CACTTGCCGGAATACAAGGG+TGG + chr4_2:24012884-24012903 Msa0595150:intron 55.0%
!! GGGTTGGTTTGGGAGAGACT+AGG + chr4_2:24013075-24013094 Msa0595150:intron 55.0%
TATCGGCCATGGTTGCGCTA+TGG + chr4_2:24013611-24013630 Msa0595150:intron 55.0%
TGCGCTATGGCAGATATCGG+TGG + chr4_2:24013624-24013643 Msa0595150:intron 55.0%
GCTTGGACTCGAAGATCTCG+AGG + chr4_2:24015108-24015127 Msa0595150:CDS 55.0%
CCGCTTCCATGATTTCCTGC+TGG - chr4_2:24015151-24015170 None:intergenic 55.0%
CTCATGGCATGTGGCCCGTT+TGG - chr4_2:24012443-24012462 None:intergenic 60.0%
!! ACCGCCACGGTGCCATATGT+CGG + chr4_2:24013661-24013680 Msa0595150:intron 60.0%
TCCGACATATGGCACCGTGG+CGG - chr4_2:24013665-24013684 None:intergenic 60.0%
CACGCGAAAGTGACACACCG+TGG + chr4_2:24015231-24015250 Msa0595150:CDS 60.0%
CTCATGGCATGTGGCCCGTT+TGG - chr4_2:24012443-24012462 None:intergenic 60.0%
!! ACCGCCACGGTGCCATATGT+CGG + chr4_2:24013661-24013680 Msa0595150:intron 60.0%
TCCGACATATGGCACCGTGG+CGG - chr4_2:24013665-24013684 None:intergenic 60.0%
CACGCGAAAGTGACACACCG+TGG + chr4_2:24015231-24015250 Msa0595150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 24011669 24015761 24011669 ID=Msa0595150;Name=Msa0595150
chr4_2 mRNA 24011669 24015761 24011669 ID=Msa0595150-mRNA-1;Parent=Msa0595150;Name=Msa0595150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=61|1|1|1|0|0.5|2|276|195
chr4_2 exon 24011669 24011921 24011669 ID=Msa0595150-mRNA-1:exon:6444;Parent=Msa0595150-mRNA-1
chr4_2 exon 24015090 24015761 24015090 ID=Msa0595150-mRNA-1:exon:6445;Parent=Msa0595150-mRNA-1
chr4_2 five_prime_UTR 24011669 24011729 24011669 ID=Msa0595150-mRNA-1:five_prime_utr;Parent=Msa0595150-mRNA-1
chr4_2 CDS 24011730 24011921 24011730 ID=Msa0595150-mRNA-1:cds;Parent=Msa0595150-mRNA-1
chr4_2 CDS 24015090 24015485 24015090 ID=Msa0595150-mRNA-1:cds;Parent=Msa0595150-mRNA-1
chr4_2 three_prime_UTR 24015486 24015761 24015486 ID=Msa0595150-mRNA-1:three_prime_utr;Parent=Msa0595150-mRNA-1
Gene Sequence

>Msa0595150

ATGATAACAAGCTGTGTTGGTTGGGCATCAGCATCATCATCACTCTGTTGCGACACTAAGCTGCGGCAAAACCAACTCCTATCATCTCCATCTCCATCTCGCTCTTCGCTTTCGTTTTCACGCTCATTTCCTTCTTTACCCATCTCCATCTCAACAACCACTCTCTCTCCCTCAAACTCCAACAATCCCAAAGGTACTTTCATTCGAGCTGCTTGGACTCGAAGATCTCGAGGTGAAGCTGAAAAGAAACCCAGCAGGAAATCATGGAAGCGGAGAACAGATATGTACATGAGACCGTTTTTATTAGACATTTTCTTTTCAAAGAAATTCGTTCACGCGAAAGTGACACACCGTGGAACAAGCAAAGTGATATGTGCTGCTACCACAAACGCCAAAGATCTTCGAAACTCTCTTCCATCCTTGATAGATCCTGAAGCTTGTAGAGTAATTGGAAGGCTTATAGCAGAGCGATCAAAGGAAGCTGATGTATATGCAATGGCATACGAACCGAGAAAGAATGAAAGGATTGAAGGTAGACTGGGAATCATTCTTGATACTGTTAAAGAAAACGGGATTCTTTTTGTTTGA
Protein sequence

>Msa0595150

MITSCVGWASASSSLCCDTKLRQNQLLSSPSPSRSSLSFSRSFPSLPISISTTTLSPSNSNNPKGTFIRAAWTRRSRGEAEKKPSRKSWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVICAATTNAKDLRNSLPSLIDPEACRVIGRLIAERSKEADVYAMAYEPRKNERIEGRLGIILDTVKENGILFV*