AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042240 MtrunA17_Chr1g0181891 93.906 361 19 1 1 358 1 361 0.0 675
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042240 AT5G12130.1 62.760 384 113 5 1 357 1 381 4.27e-152 433
Msa0042240 AT5G12130.2 69.255 322 80 2 53 357 22 341 1.74e-148 423

Find 101 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTCTTCTCATCATTTA+AGG 0.091098 1_1:-72995932 Msa0042240:intron
TTGTTACAGGGATCAATTTC+TGG 0.173453 1_1:+72995447 None:intergenic
CGCCTGATAATAATACTTCT+TGG 0.220107 1_1:-72996134 Msa0042240:CDS
TGTAACACGGGATCCATTTA+TGG 0.222748 1_1:-72994450 Msa0042240:CDS
AACCAAAAGAGTGGTATTAT+TGG 0.232223 1_1:-72998610 Msa0042240:five_prime_UTR
CTGTTAGAGCTGTAGCCTTA+TGG 0.249487 1_1:-72997185 Msa0042240:CDS
CTTGATCGATTTCATTCTTC+AGG 0.260255 1_1:-72998257 Msa0042240:intron
CTTAACATATCTTGTAATTC+TGG 0.261758 1_1:-72998638 Msa0042240:five_prime_UTR
GGGTTCCTCAGTTGGCTATT+TGG 0.261962 1_1:+72991761 None:intergenic
TTAGAAGAAAACACCATAAA+TGG 0.262800 1_1:+72994437 None:intergenic
GCTGTTGTACTGGGATTTAT+TGG 0.265015 1_1:-72992148 Msa0042240:CDS
GATGATAAAGGAATAATAAA+TGG 0.280495 1_1:+72991831 None:intergenic
ATTTGGGGTGTGGGTAGAAT+TGG 0.281978 1_1:+72991862 None:intergenic
TAGAGAACATTACTTGTTAC+AGG 0.291477 1_1:+72995434 None:intergenic
GTGGGTAGAATTGGATTTCT+TGG 0.296890 1_1:+72991871 None:intergenic
CATTATGATTCAATGGAGTT+TGG 0.307601 1_1:+72998504 None:intergenic
GCCGTCCATTGCTGTTGTAC+TGG 0.308097 1_1:-72992158 Msa0042240:CDS
TCAAATTTGAATTATGAGTT+TGG 0.317493 1_1:-72998549 Msa0042240:exon
AGCCAATAATACCACTCTTT+TGG 0.321171 1_1:+72998608 None:intergenic
TTCCAAGAAGTATTATTATC+AGG 0.326520 1_1:+72996132 None:intergenic
GAAGTGGAGTGTAGAGGTTT+TGG 0.332081 1_1:+72998454 None:intergenic
AAGATGATCTTGGACTATTT+TGG 0.334282 1_1:-72992121 Msa0042240:intron
TGTTAGAGCTGTAGCCTTAT+GGG 0.336554 1_1:-72997184 Msa0042240:intron
GAGAAAATGAATTGAAACTT+TGG 0.340602 1_1:+72998570 None:intergenic
CTTTGTTTATAGATACATAT+TGG 0.344349 1_1:-72996407 Msa0042240:intron
TAACAAATCAGGATGGGATA+TGG 0.357049 1_1:-72994834 Msa0042240:CDS
TGAATCATAATGCCCTTATC+AGG 0.358661 1_1:-72998493 Msa0042240:CDS
GTACTTTCCTATGGTATTGC+TGG 0.361260 1_1:-72996170 Msa0042240:CDS
GTCAGAATTGAAGTACTTAC+AGG 0.370831 1_1:-72993969 Msa0042240:intron
CTGTTGTACTGGGATTTATT+GGG 0.375873 1_1:-72992147 Msa0042240:CDS
TGCATCACCTGATACAAAAC+TGG 0.390885 1_1:+72996322 None:intergenic
CATTGGAGTGATATTAAGTC+TGG 0.394288 1_1:-72991963 Msa0042240:CDS
GCAATATTGCGGCCAATAGA+AGG 0.394887 1_1:+72995950 None:intergenic
TCTTGGAACAGCCACCATTC+AGG 0.402272 1_1:-72996117 Msa0042240:intron
TGAGGCAGTCAACCTTCTAT+TGG 0.402764 1_1:-72995962 Msa0042240:CDS
TATTGGGTGTAAGATGATCT+TGG 0.406333 1_1:-72992131 Msa0042240:CDS
AGATAGGACGGTGAAGGAAG+TGG 0.408111 1_1:+72998438 None:intergenic
CCGAGTATACAAGATGATAA+AGG 0.408126 1_1:+72991819 None:intergenic
CCGTCCATTGCTGTTGTACT+GGG 0.410679 1_1:-72992157 Msa0042240:CDS
AAGGCATCAGAATTCTTTGC+TGG 0.414094 1_1:-72997007 Msa0042240:CDS
CCTTTATCATCTTGTATACT+CGG 0.414413 1_1:-72991819 Msa0042240:three_prime_UTR
ATAATGCCCTTATCAGGATC+AGG 0.423375 1_1:-72998487 Msa0042240:CDS
GTTTGCGCCGCAGTAGCATT+TGG 0.429457 1_1:-72997061 Msa0042240:CDS
GTCTCAACGGAGGCATCTCT+TGG 0.430135 1_1:-72992007 Msa0042240:CDS
AATTGAAACTTTGGAGAGAA+GGG 0.436110 1_1:+72998579 None:intergenic
TGAAACCCTGATCCTGATAA+GGG 0.436637 1_1:+72998481 None:intergenic
AAACAAGTTCATAACAAATC+AGG 0.439299 1_1:-72994845 Msa0042240:CDS
TTGAAACCCTGATCCTGATA+AGG 0.444991 1_1:+72998480 None:intergenic
CAGAGATTTACCCACCCATA+AGG 0.448990 1_1:+72997170 None:intergenic
CAGAATCGTGTACTTTCCTA+TGG 0.449268 1_1:-72996179 Msa0042240:CDS
ATGGAGAATACCTGAGGAAA+AGG 0.451694 1_1:+72998412 None:intergenic
ATTGTTGCAGCATATTATGA+TGG 0.458126 1_1:-72994868 Msa0042240:intron
CCTGAGGAAAAGGAAGAGAT+AGG 0.458480 1_1:+72998422 None:intergenic
GCAAGATAGCTTACCCAGAA+TGG 0.477769 1_1:+72994406 None:intergenic
GTAGCCTCTAGTCTTTCCAT+TGG 0.487920 1_1:-72991980 Msa0042240:CDS
ATTTGTCAAATGTAGGTTTG+AGG 0.510439 1_1:-72994021 Msa0042240:intron
ATAAGGGCATTATGATTCAA+TGG 0.521803 1_1:+72998497 None:intergenic
GCCATAGCACAGTCTACAAA+GGG 0.523116 1_1:+72991741 None:intergenic
GTAGCATTTGGTGTTGGTGT+GGG 0.536752 1_1:-72997049 Msa0042240:CDS
GAGCTCAACTCATTCTGAGT+TGG 0.540882 1_1:+72991915 None:intergenic
ACTTTACATGATAATTTCTG+AGG 0.542248 1_1:-72993996 Msa0042240:CDS
TTGAAACTTTGGAGAGAAGG+GGG 0.543010 1_1:+72998581 None:intergenic
AGGAAGAGATAGGACGGTGA+AGG 0.543420 1_1:+72998432 None:intergenic
GAATTGAAACTTTGGAGAGA+AGG 0.547136 1_1:+72998578 None:intergenic
TGATGAGATATCTTCTACTG+AGG 0.548341 1_1:-72997223 Msa0042240:CDS
TTGGCTTCTGTTGTTCACAA+TGG 0.556243 1_1:-72998530 Msa0042240:CDS
GCCGCAGTAGCATTTGGTGT+TGG 0.559997 1_1:-72997055 Msa0042240:CDS
GTGAAGGAAGTGGAGTGTAG+AGG 0.568026 1_1:+72998448 None:intergenic
AGTAGCATTTGGTGTTGGTG+TGG 0.569083 1_1:-72997050 Msa0042240:CDS
TCTACAAAGGGTTCCTCAGT+TGG 0.573428 1_1:+72991753 None:intergenic
GAGATGCCTCCGTTGAGACA+TGG 0.574395 1_1:+72992011 None:intergenic
TAATGCCCTTATCAGGATCA+GGG 0.576136 1_1:-72998486 Msa0042240:CDS
AGGCATCAGAATTCTTTGCT+GGG 0.578831 1_1:-72997006 Msa0042240:intron
AATGTCACTGAGTTCAATAA+CGG 0.580060 1_1:+72994590 None:intergenic
CAGACTTAATATCACTCCAA+TGG 0.582011 1_1:+72991964 None:intergenic
ATTGAAACTTTGGAGAGAAG+GGG 0.583653 1_1:+72998580 None:intergenic
ACCCTTTGTAGACTGTGCTA+TGG 0.588312 1_1:-72991742 Msa0042240:three_prime_UTR
CTTTACATGATAATTTCTGA+GGG 0.588312 1_1:-72993995 Msa0042240:CDS
AGTTCATAACAAATCAGGAT+GGG 0.600192 1_1:-72994840 Msa0042240:CDS
TACAGGATTCCATGTCTCAA+CGG 0.603150 1_1:-72992020 Msa0042240:intron
ACCAACACCAAATGCTACTG+CGG 0.603707 1_1:+72997054 None:intergenic
AAATCCCAGTACAACAGCAA+TGG 0.605163 1_1:+72992153 None:intergenic
AGAGAACATTACTTGTTACA+GGG 0.606173 1_1:+72995435 None:intergenic
CCCAGTACAACAGCAATGGA+CGG 0.606201 1_1:+72992157 None:intergenic
AAATCAGGATGGGATATGGA+TGG 0.609233 1_1:-72994830 Msa0042240:intron
AGCCATAGCACAGTCTACAA+AGG 0.609625 1_1:+72991740 None:intergenic
ACGGCTACGGTAAGAAGCAA+AGG 0.614565 1_1:+72994609 None:intergenic
CACTCCAATGGAAAGACTAG+AGG 0.616706 1_1:+72991976 None:intergenic
TGATACATGCAAGTGGTAGA+CGG 0.621352 1_1:+72998294 None:intergenic
ACTGAGTTCAATAACGGCTA+CGG 0.624614 1_1:+72994596 None:intergenic
AAGTTCATAACAAATCAGGA+TGG 0.640212 1_1:-72994841 Msa0042240:CDS
AGGAAAAGGAAGAGATAGGA+CGG 0.645585 1_1:+72998426 None:intergenic
TTGAAAACACACCTGAATGG+TGG 0.653741 1_1:+72996106 None:intergenic
TACGGTAAGAAGCAAAGGTG+TGG 0.654323 1_1:+72994614 None:intergenic
TGATGAGAAGAGCAATATTG+CGG 0.659476 1_1:+72995939 None:intergenic
ATTTGTTTGATACATGCAAG+TGG 0.659998 1_1:+72998287 None:intergenic
AACTGCACCAGCAATACCAT+AGG 0.661157 1_1:+72996163 None:intergenic
CTGGCGCAAAACCAAAAGAG+TGG 0.669445 1_1:-72998619 Msa0042240:five_prime_UTR
ATTGGAGCAAAGTCTCTCAG+TGG 0.684312 1_1:-72996389 Msa0042240:CDS
ATTAGCCAAATAGCCAACTG+AGG 0.692887 1_1:-72991766 Msa0042240:three_prime_UTR
AGGATTCCATGTCTCAACGG+AGG 0.720260 1_1:-72992017 Msa0042240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTCAAAAACA+AGG - chr1_1:72992410-72992429 Msa0042240:intron 10.0%
!! CAAAATTTGATATAATTATA+AGG - chr1_1:72992957-72992976 Msa0042240:intron 10.0%
!!! ATTTTTAAAATTTTCTAGAA+TGG - chr1_1:72993316-72993335 Msa0042240:intron 10.0%
!!! TTTTTAAAATTTTCTAGAAT+GGG - chr1_1:72993317-72993336 Msa0042240:intron 10.0%
!!! TTTTTTTTTTTTTGTTTTTG+TGG - chr1_1:72994246-72994265 Msa0042240:intron 10.0%
!! AAAGTTTAATTAAATTATGA+AGG - chr1_1:72994560-72994579 Msa0042240:intron 10.0%
!! AAAATTAAATTCAAATATAC+AGG + chr1_1:72995935-72995954 None:intergenic 10.0%
!! ATTCATTATAAAATACAAAA+TGG + chr1_1:72997820-72997839 None:intergenic 10.0%
!!! TTATAATGAATTTTATCATA+AGG - chr1_1:72997829-72997848 Msa0042240:intron 10.0%
!!! TAAAAGGTGATTTTTTTTTT+TGG - chr1_1:72992476-72992495 Msa0042240:intron 15.0%
!! ATTTATTCAAAATCTATTCT+TGG - chr1_1:72992564-72992583 Msa0042240:intron 15.0%
!!! TTTTTTTTATTTTTGATCCA+AGG - chr1_1:72992623-72992642 Msa0042240:intron 15.0%
!!! CTTTAAGTTTTTTAATCATT+TGG - chr1_1:72993600-72993619 Msa0042240:intron 15.0%
!!! TTTGTTATAAAGTTGTTTAT+TGG + chr1_1:72996051-72996070 None:intergenic 15.0%
!! TTCTTTAAATGTATTACATT+TGG - chr1_1:72996411-72996430 Msa0042240:intron 15.0%
!! TCTTTAAATGTATTACATTT+GGG - chr1_1:72996412-72996431 Msa0042240:intron 15.0%
!!! AGGTTTTTAATTTCAAAATA+GGG + chr1_1:72997104-72997123 None:intergenic 15.0%
!!! TAGGTTTTTAATTTCAAAAT+AGG + chr1_1:72997105-72997124 None:intergenic 15.0%
!! AATAAAATGAAATTATTAGG+AGG + chr1_1:72997856-72997875 None:intergenic 15.0%
!! TTTGTAATATATCATATCAA+TGG + chr1_1:72998045-72998064 None:intergenic 15.0%
!! AACAAAATATGGTATATTAA+TGG + chr1_1:72998106-72998125 None:intergenic 15.0%
!!! ATAAATGGATATTTTCATTT+GGG + chr1_1:72998448-72998467 None:intergenic 15.0%
!!! AATAAATGGATATTTTCATT+TGG + chr1_1:72998449-72998468 None:intergenic 15.0%
!!! GAGATATTTATTTTATATGT+TGG - chr1_1:72998498-72998517 Msa0042240:CDS 15.0%
!! TCAAATTTGAATTATGAGTT+TGG - chr1_1:72991742-72991761 Msa0042240:three_prime_UTR 20.0%
!! AGTAATTAAGAAGATGAATT+TGG + chr1_1:72991922-72991941 None:intergenic 20.0%
!!! TTTTTTTTTCAAAAACAAGG+AGG - chr1_1:72992413-72992432 Msa0042240:intron 20.0%
!!! TTGTAATTTGTAGGAATAAA+AGG + chr1_1:72992653-72992672 None:intergenic 20.0%
!! AATAAGCTAAAAACAACTTA+TGG - chr1_1:72992851-72992870 Msa0042240:intron 20.0%
!! TGCTTATGATAAGTAATAAA+TGG - chr1_1:72992921-72992940 Msa0042240:intron 20.0%
!! ATTAATGTAAATGAAATCAG+AGG + chr1_1:72993190-72993209 None:intergenic 20.0%
!! CATTTACATTAATCTAGTTA+TGG - chr1_1:72993197-72993216 Msa0042240:intron 20.0%
!! AAAGAAACTTCACAAAATAT+TGG + chr1_1:72993584-72993603 None:intergenic 20.0%
!!! CTTTGTTTATAGATACATAT+TGG - chr1_1:72993884-72993903 Msa0042240:intron 20.0%
!! TAAATATTGGATAATGAGAA+TGG + chr1_1:72994388-72994407 None:intergenic 20.0%
!!! AGAATGAAGTACTTAAATAT+TGG + chr1_1:72994401-72994420 None:intergenic 20.0%
!!! AACTTAAAAGTTTAAGGTTT+AGG + chr1_1:72994640-72994659 None:intergenic 20.0%
!! TACTTCAACTTAAAAGTTTA+AGG + chr1_1:72994646-72994665 None:intergenic 20.0%
!!! ATTTTTTCAGAGTAAGATTT+TGG + chr1_1:72995405-72995424 None:intergenic 20.0%
!! AAAATTTCACATTAAATGGA+AGG + chr1_1:72995758-72995777 None:intergenic 20.0%
!!! TTATTTTCAACCACTATTTT+TGG + chr1_1:72996523-72996542 None:intergenic 20.0%
!! TAAATTGCTTATCTTGAAAT+TGG - chr1_1:72996633-72996652 Msa0042240:intron 20.0%
!! AAATTGCTTATCTTGAAATT+GGG - chr1_1:72996634-72996653 Msa0042240:intron 20.0%
!! TGATAATTTATTCTCAAAAG+AGG - chr1_1:72996814-72996833 Msa0042240:intron 20.0%
!! TAGAGTAATATAACTCAAAA+TGG - chr1_1:72997042-72997061 Msa0042240:CDS 20.0%
!! AGAGTAATATAACTCAAAAT+GGG - chr1_1:72997043-72997062 Msa0042240:CDS 20.0%
!!! GGTTTTTAATTTCAAAATAG+GGG + chr1_1:72997103-72997122 None:intergenic 20.0%
!!! TTTTCAGAAACCAATTTTTT+TGG - chr1_1:72997464-72997483 Msa0042240:intron 20.0%
!!! TTTCAGAAACCAATTTTTTT+GGG - chr1_1:72997465-72997484 Msa0042240:intron 20.0%
!! ATAAGTCATGGTATATATAA+AGG + chr1_1:72997921-72997940 None:intergenic 20.0%
!! AATATGGTATATTAATGGTA+AGG + chr1_1:72998101-72998120 None:intergenic 20.0%
!! CAGAGGATTATATTAAAATT+TGG + chr1_1:72998222-72998241 None:intergenic 20.0%
!!! TAAATGGATATTTTCATTTG+GGG + chr1_1:72998447-72998466 None:intergenic 20.0%
!! GATGATAAAGGAATAATAAA+TGG + chr1_1:72998463-72998482 None:intergenic 20.0%
!!! GTCAATCAAAACATTTTTTT+TGG - chr1_1:72998644-72998663 Msa0042240:five_prime_UTR 20.0%
! CTTAACATATCTTGTAATTC+TGG - chr1_1:72991653-72991672 Msa0042240:three_prime_UTR 25.0%
! GAGAAAATGAATTGAAACTT+TGG + chr1_1:72991724-72991743 None:intergenic 25.0%
! AATTAAGAAGATGAATTTGG+AGG + chr1_1:72991919-72991938 None:intergenic 25.0%
! ACATGGAAAAAAAGTGAATA+GGG + chr1_1:72991952-72991971 None:intergenic 25.0%
! AAATTAGAGTGCGTTTATTT+AGG - chr1_1:72992244-72992263 Msa0042240:intron 25.0%
!!! AATCACTTTTGTCATTTTGA+AGG - chr1_1:72992288-72992307 Msa0042240:intron 25.0%
!!! CTCTAAAATGAAAAGCTATT+AGG - chr1_1:72992361-72992380 Msa0042240:intron 25.0%
! AAAAATTTACAGGTTGTGTT+TGG + chr1_1:72992600-72992619 None:intergenic 25.0%
!! TAATTTGTAGGAATAAAAGG+TGG + chr1_1:72992650-72992669 None:intergenic 25.0%
!!! CATGTAGTTTTGTAATTTGT+AGG + chr1_1:72992662-72992681 None:intergenic 25.0%
!! TTTTACAGAAGGTTATGAAA+AGG - chr1_1:72993265-72993284 Msa0042240:intron 25.0%
! AAACTTCACAAAATATTGGT+GGG + chr1_1:72993580-72993599 None:intergenic 25.0%
! CTCTGTGATATACTAATTTA+AGG + chr1_1:72993704-72993723 None:intergenic 25.0%
! GTTTGTAGTTATAGCATATT+TGG - chr1_1:72993742-72993761 Msa0042240:intron 25.0%
! CATGAATGCAAATAATTGAT+CGG - chr1_1:72994063-72994082 Msa0042240:intron 25.0%
!!! TTCCAAGAAGTATTATTATC+AGG + chr1_1:72994162-72994181 None:intergenic 25.0%
!! GATTAATACTGTGATTTTAG+AGG - chr1_1:72994304-72994323 Msa0042240:intron 25.0%
! TCCTTAAAGCTTAAGATATT+AGG - chr1_1:72994469-72994488 Msa0042240:CDS 25.0%
! TCCTAATATCTTAAGCTTTA+AGG + chr1_1:72994473-72994492 None:intergenic 25.0%
!! ACAAAAAATTTGAAGTTCCT+AGG + chr1_1:72994703-72994722 None:intergenic 25.0%
!!! GAACTTCAAATTTTTTGTTG+TGG - chr1_1:72994705-72994724 Msa0042240:intron 25.0%
!!! TTTCTTTCTCTTTTTGTTGT+TGG - chr1_1:72994890-72994909 Msa0042240:intron 25.0%
!!! TTTTTTGTTGATCACTTGAA+TGG - chr1_1:72994916-72994935 Msa0042240:intron 25.0%
! ATTCAGTTTCAATTGATCAA+CGG + chr1_1:72995008-72995027 None:intergenic 25.0%
! TAGAATAACTAGATATAAGC+TGG - chr1_1:72995163-72995182 Msa0042240:intron 25.0%
!! TGGAGTATTCTAATTACATT+GGG - chr1_1:72995183-72995202 Msa0042240:intron 25.0%
!! AATGCTGGATTAGAATAAAT+AGG - chr1_1:72995228-72995247 Msa0042240:intron 25.0%
! TTGTATACATGTATACATGT+AGG + chr1_1:72995268-72995287 None:intergenic 25.0%
! AAACAAGTTCATAACAAATC+AGG - chr1_1:72995446-72995465 Msa0042240:intron 25.0%
! CCACAAAATTTCACATTAAA+TGG + chr1_1:72995762-72995781 None:intergenic 25.0%
!! CCATTTAATGTGAAATTTTG+TGG - chr1_1:72995759-72995778 Msa0042240:intron 25.0%
! TTAGAAGAAAACACCATAAA+TGG + chr1_1:72995857-72995876 None:intergenic 25.0%
! GCTAGTAAAACTTCATTTAT+AGG - chr1_1:72995999-72996018 Msa0042240:intron 25.0%
!! AACTGTTATTTGTCAAATGT+AGG - chr1_1:72996263-72996282 Msa0042240:intron 25.0%
! ACTTTACATGATAATTTCTG+AGG - chr1_1:72996295-72996314 Msa0042240:intron 25.0%
! CTTTACATGATAATTTCTGA+GGG - chr1_1:72996296-72996315 Msa0042240:intron 25.0%
!! AAAATAAACTCACGTTGTTT+TGG - chr1_1:72996536-72996555 Msa0042240:intron 25.0%
! AATTGCTTATCTTGAAATTG+GGG - chr1_1:72996635-72996654 Msa0042240:intron 25.0%
! TTATATTCCTTTGTCTAAGT+AGG - chr1_1:72996767-72996786 Msa0042240:intron 25.0%
! AAATTGAAGTCAAATGCAAT+GGG + chr1_1:72996795-72996814 None:intergenic 25.0%
! ATCATCATTTCAGCAAAAAA+AGG - chr1_1:72996844-72996863 Msa0042240:intron 25.0%
! AATTACCTGAATCTTAATCA+AGG + chr1_1:72996901-72996920 None:intergenic 25.0%
! AAGATTCAGGTAATTTCTAA+AGG - chr1_1:72996906-72996925 Msa0042240:intron 25.0%
! CTTTGCAAGATAATAGATAT+TGG + chr1_1:72996942-72996961 None:intergenic 25.0%
!! ATATTACTCTAGCTTAGAAT+TGG + chr1_1:72997033-72997052 None:intergenic 25.0%
!!! AAAATAGGGGATTTTGATTT+TGG + chr1_1:72997090-72997109 None:intergenic 25.0%
! GATAAGAAACACATACATTT+AGG + chr1_1:72997124-72997143 None:intergenic 25.0%
! ATAGTTAGACTTTATACTGT+CGG - chr1_1:72997587-72997606 Msa0042240:intron 25.0%
!!! CTTTTCATTTGTTGAAAAAC+TGG + chr1_1:72997633-72997652 None:intergenic 25.0%
!!! CAGTTTTTCAACAAATGAAA+AGG - chr1_1:72997631-72997650 Msa0042240:intron 25.0%
AACCAAAAGAGTGGTATTAT+TGG - chr1_1:72991681-72991700 Msa0042240:three_prime_UTR 30.0%
! AATTGAAACTTTGGAGAGAA+GGG + chr1_1:72991715-72991734 None:intergenic 30.0%
CATTATGATTCAATGGAGTT+TGG + chr1_1:72991790-72991809 None:intergenic 30.0%
!! ATAAGGGCATTATGATTCAA+TGG + chr1_1:72991797-72991816 None:intergenic 30.0%
CATGGAAAAAAAGTGAATAG+GGG + chr1_1:72991951-72991970 None:intergenic 30.0%
GACATGGAAAAAAAGTGAAT+AGG + chr1_1:72991953-72991972 None:intergenic 30.0%
ATTTGTTTGATACATGCAAG+TGG + chr1_1:72992007-72992026 None:intergenic 30.0%
TCTAACTTGAAGGTAGAAAT+TGG - chr1_1:72992188-72992207 Msa0042240:intron 30.0%
AAGCATTTATGAGACTGTTT+GGG + chr1_1:72992906-72992925 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG + chr1_1:72992907-72992926 None:intergenic 30.0%
ATCTAGTTATGGTTTCTTAC+AGG - chr1_1:72993208-72993227 Msa0042240:intron 30.0%
CTATTCTAGTAGTGTAAAGT+TGG + chr1_1:72993469-72993488 None:intergenic 30.0%
GAAACTTCACAAAATATTGG+TGG + chr1_1:72993581-72993600 None:intergenic 30.0%
GCTTATCAAAGCAGAAATTA+AGG + chr1_1:72993639-72993658 None:intergenic 30.0%
! TAATTTAAGGCCATATTCAC+AGG + chr1_1:72993691-72993710 None:intergenic 30.0%
ATGCTATAACTACAAACTCT+TGG + chr1_1:72993739-72993758 None:intergenic 30.0%
!!! TTGGATATTTTGAAGTACTC+TGG - chr1_1:72993802-72993821 Msa0042240:intron 30.0%
AAAGTTTACTCTTGACAAGA+AGG + chr1_1:72994002-72994021 None:intergenic 30.0%
GAGCAGTAACAAGTTATTAT+TGG - chr1_1:72994022-72994041 Msa0042240:intron 30.0%
!! ATTTTGAAAACACACCTGAA+TGG + chr1_1:72994191-72994210 None:intergenic 30.0%
! ATTCAGGTGTGTTTTCAAAA+TGG - chr1_1:72994190-72994209 Msa0042240:intron 30.0%
ATCACAGTATTAATCAAGAC+AGG + chr1_1:72994299-72994318 None:intergenic 30.0%
ATTGCTCTTCTCATCATTTA+AGG - chr1_1:72994359-72994378 Msa0042240:intron 30.0%
TTAAGTACTTCATTCTTGCT+TGG - chr1_1:72994405-72994424 Msa0042240:intron 30.0%
AAGCTTAAGATATTAGGACA+TGG - chr1_1:72994475-72994494 Msa0042240:CDS 30.0%
!! CTTTTGGCTATATGATATCA+AGG - chr1_1:72994605-72994624 Msa0042240:CDS 30.0%
! AGTTTAAGGTTTAGGATGAT+TGG + chr1_1:72994632-72994651 None:intergenic 30.0%
TTGTGGTATTCACAATTCTA+TGG - chr1_1:72994722-72994741 Msa0042240:intron 30.0%
! AGACTTATCTGACAACTTTT+TGG - chr1_1:72994811-72994830 Msa0042240:intron 30.0%
! AGAGAACATTACTTGTTACA+GGG + chr1_1:72994859-72994878 None:intergenic 30.0%
! TAGAGAACATTACTTGTTAC+AGG + chr1_1:72994860-72994879 None:intergenic 30.0%
AACCAATGAAAGAAGAATTC+TGG - chr1_1:72995138-72995157 Msa0042240:intron 30.0%
ATCCAGAATTCTTCTTTCAT+TGG + chr1_1:72995143-72995162 None:intergenic 30.0%
! CTGGAGTATTCTAATTACAT+TGG - chr1_1:72995182-72995201 Msa0042240:intron 30.0%
GTATTCTAATTACATTGGGT+TGG - chr1_1:72995187-72995206 Msa0042240:intron 30.0%
ATACTCAAATAAAACGACCA+CGG + chr1_1:72995352-72995371 None:intergenic 30.0%
ATTGTTGCAGCATATTATGA+TGG - chr1_1:72995423-72995442 Msa0042240:intron 30.0%
AAGTTCATAACAAATCAGGA+TGG - chr1_1:72995450-72995469 Msa0042240:CDS 30.0%
AGTTCATAACAAATCAGGAT+GGG - chr1_1:72995451-72995470 Msa0042240:CDS 30.0%
! TAACAGGGATCAAACATTTT+GGG - chr1_1:72995650-72995669 Msa0042240:intron 30.0%
AATGTCACTGAGTTCAATAA+CGG + chr1_1:72995704-72995723 None:intergenic 30.0%
TTGTGGTATAAATCTTGACA+CGG - chr1_1:72995776-72995795 Msa0042240:intron 30.0%
! ACACGGTTTTCTTTTCTAAT+AGG - chr1_1:72995793-72995812 Msa0042240:intron 30.0%
! TTCTAATCTTTTTGCCATTC+TGG - chr1_1:72995871-72995890 Msa0042240:intron 30.0%
! TCTAATCTTTTTGCCATTCT+GGG - chr1_1:72995872-72995891 Msa0042240:intron 30.0%
ATACAGGCATTACATCATAA+GGG + chr1_1:72995919-72995938 None:intergenic 30.0%
TATACAGGCATTACATCATA+AGG + chr1_1:72995920-72995939 None:intergenic 30.0%
TTTCCAGGTATCAAACTTTA+AGG + chr1_1:72995975-72995994 None:intergenic 30.0%
TATTGGCACATGTTTATCAA+TGG + chr1_1:72996034-72996053 None:intergenic 30.0%
TCCATTAAGTCATTAACATG+TGG - chr1_1:72996118-72996137 Msa0042240:CDS 30.0%
TCCACATGTTAATGACTTAA+TGG + chr1_1:72996122-72996141 None:intergenic 30.0%
!! AAAAAGCATCGACTATTGTT+AGG + chr1_1:72996203-72996222 None:intergenic 30.0%
ATTTGTCAAATGTAGGTTTG+AGG - chr1_1:72996270-72996289 Msa0042240:intron 30.0%
AGAAAATCATGCATCAATCA+TGG + chr1_1:72996375-72996394 None:intergenic 30.0%
CAAATTGAAGTCAAATGCAA+TGG + chr1_1:72996796-72996815 None:intergenic 30.0%
TCATTTCAGCAAAAAAAGGT+AGG - chr1_1:72996848-72996867 Msa0042240:intron 30.0%
CATTTCAGCAAAAAAAGGTA+GGG - chr1_1:72996849-72996868 Msa0042240:intron 30.0%
! CAGGTAATTTCTAAAGGAAA+CGG - chr1_1:72996912-72996931 Msa0042240:intron 30.0%
TCTATGAATAAACGTTGATG+AGG + chr1_1:72996978-72996997 None:intergenic 30.0%
AGAATTGGATTGTCTTATCA+AGG + chr1_1:72997018-72997037 None:intergenic 30.0%
! GAGAGAGAACAGATTTTTAA+TGG + chr1_1:72997231-72997250 None:intergenic 30.0%
AGCAAACAGTTTCATTCATT+TGG + chr1_1:72997293-72997312 None:intergenic 30.0%
TGTTTGCTTTAATTCTGAGT+TGG - chr1_1:72997305-72997324 Msa0042240:intron 30.0%
TCAAATGGACCCAAAAAAAT+TGG + chr1_1:72997477-72997496 None:intergenic 30.0%
ATTTCTTTCGAGAAATTGAG+AGG + chr1_1:72997511-72997530 None:intergenic 30.0%
TCTCAATTTCTCGAAAGAAA+TGG - chr1_1:72997510-72997529 Msa0042240:intron 30.0%
AATTTCTCGAAAGAAATGGA+GGG - chr1_1:72997514-72997533 Msa0042240:intron 30.0%
! TCATTTGTTGAAAAACTGGA+GGG + chr1_1:72997629-72997648 None:intergenic 30.0%
! TTCATTTGTTGAAAAACTGG+AGG + chr1_1:72997630-72997649 None:intergenic 30.0%
AATTCGCAATTGATGTAAGT+CGG + chr1_1:72997672-72997691 None:intergenic 30.0%
TATCTTGAATTATGACTGCA+TGG - chr1_1:72997751-72997770 Msa0042240:intron 30.0%
TGGTATATTAATGGTAAGGA+TGG + chr1_1:72998097-72998116 None:intergenic 30.0%
! AAGATGATCTTGGACTATTT+TGG - chr1_1:72998170-72998189 Msa0042240:intron 30.0%
CCTTTATCATCTTGTATACT+CGG - chr1_1:72998472-72998491 Msa0042240:CDS 30.0%
! AGCCAATAATACCACTCTTT+TGG + chr1_1:72991686-72991705 None:intergenic 35.0%
! ATTGAAACTTTGGAGAGAAG+GGG + chr1_1:72991714-72991733 None:intergenic 35.0%
! GAATTGAAACTTTGGAGAGA+AGG + chr1_1:72991716-72991735 None:intergenic 35.0%
TGAATCATAATGCCCTTATC+AGG - chr1_1:72991798-72991817 Msa0042240:three_prime_UTR 35.0%
! CTTGATCGATTTCATTCTTC+AGG - chr1_1:72992034-72992053 Msa0042240:intron 35.0%
TGCTTTGATTACACTTCTTG+AGG - chr1_1:72992128-72992147 Msa0042240:CDS 35.0%
CAAGTTAGAGTCAATTCTGA+AGG + chr1_1:72992177-72992196 None:intergenic 35.0%
! CAGAATTGACTCTAACTTGA+AGG - chr1_1:72992178-72992197 Msa0042240:intron 35.0%
!!! CATTTTGAAGGTGTTTGTCT+AGG - chr1_1:72992300-72992319 Msa0042240:intron 35.0%
ACTCTTTATCCAAACAAGAG+AGG + chr1_1:72992693-72992712 None:intergenic 35.0%
CTTATTTCCATAAGCTCTTC+AGG + chr1_1:72992837-72992856 None:intergenic 35.0%
ATCAAGGGCTAAACTAATCA+CGG + chr1_1:72993001-72993020 None:intergenic 35.0%
! TTAGCCCTTGATTTTATGAG+TGG - chr1_1:72993009-72993028 Msa0042240:intron 35.0%
ACCACCACTCATAAAATCAA+GGG + chr1_1:72993016-72993035 None:intergenic 35.0%
TGATGAGATATCTTCTACTG+AGG - chr1_1:72993068-72993087 Msa0042240:intron 35.0%
CAATCTGAGAACTTACTATG+AGG + chr1_1:72993346-72993365 None:intergenic 35.0%
!!! TTTTTTTCCTCCTACTAGAG+AGG + chr1_1:72993402-72993421 None:intergenic 35.0%
AAGCAGGATAAAAAGAAACG+AGG + chr1_1:72993666-72993685 None:intergenic 35.0%
ATTCATGACTAGTGACTTAG+CGG - chr1_1:72993778-72993797 Msa0042240:intron 35.0%
TTTGCAAACTTTGTACTCGA+TGG - chr1_1:72993845-72993864 Msa0042240:intron 35.0%
TTGCAAACTTTGTACTCGAT+GGG - chr1_1:72993846-72993865 Msa0042240:intron 35.0%
CGCCTGATAATAATACTTCT+TGG - chr1_1:72994157-72994176 Msa0042240:intron 35.0%
CAGTATTAATCAAGACAGGA+TGG + chr1_1:72994295-72994314 None:intergenic 35.0%
!! ACTGTGATTTTAGAGGTTTG+AGG - chr1_1:72994311-72994330 Msa0042240:intron 35.0%
TGATGAGAAGAGCAATATTG+CGG + chr1_1:72994355-72994374 None:intergenic 35.0%
CATTGTTTCCTTGACAAGTA+GGG + chr1_1:72994448-72994467 None:intergenic 35.0%
TCATTGTTTCCTTGACAAGT+AGG + chr1_1:72994449-72994468 None:intergenic 35.0%
! TATCCTCTTTCATGCTACTT+AGG - chr1_1:72994516-72994535 Msa0042240:intron 35.0%
! ATCCTCTTTCATGCTACTTA+GGG - chr1_1:72994517-72994536 Msa0042240:intron 35.0%
TATCTCTTCAACAGTATCCT+AGG - chr1_1:72994683-72994702 Msa0042240:intron 35.0%
GTATTCACAATTCTATGGAC+TGG - chr1_1:72994727-72994746 Msa0042240:intron 35.0%
TTGTTACAGGGATCAATTTC+TGG + chr1_1:72994847-72994866 None:intergenic 35.0%
ACAATATCTTCTCAACTCAG+TGG - chr1_1:72995096-72995115 Msa0042240:intron 35.0%
!! TGTTGGCTTATCATTCTACT+AGG - chr1_1:72995320-72995339 Msa0042240:intron 35.0%
TAACAAATCAGGATGGGATA+TGG - chr1_1:72995457-72995476 Msa0042240:CDS 35.0%
! CTAACAGGGATCAAACATTT+TGG - chr1_1:72995649-72995668 Msa0042240:intron 35.0%
CACATTAAATGGAAGGATCA+GGG + chr1_1:72995751-72995770 None:intergenic 35.0%
TCACATTAAATGGAAGGATC+AGG + chr1_1:72995752-72995771 None:intergenic 35.0%
! CGGTTTTCTTTTCTAATAGG+TGG - chr1_1:72995796-72995815 Msa0042240:intron 35.0%
TACAGGCATTACATCATAAG+GGG + chr1_1:72995918-72995937 None:intergenic 35.0%
! GTCAGAATTGAAGTACTTAC+AGG - chr1_1:72996322-72996341 Msa0042240:intron 35.0%
TTCTAGTAACACTTCATCCT+TGG - chr1_1:72996456-72996475 Msa0042240:intron 35.0%
TCGCAAATTTCTATACAAGC+AGG + chr1_1:72996494-72996513 None:intergenic 35.0%
GTCTACGCTTTGCAATAATT+CGG + chr1_1:72996569-72996588 None:intergenic 35.0%
CTTATCTTGAAATTGGGGTT+AGG - chr1_1:72996640-72996659 Msa0042240:intron 35.0%
!! GGAAAGTACTCTTCTTGATA+GGG - chr1_1:72996870-72996889 Msa0042240:intron 35.0%
TACTGCCTTGATTAAGATTC+AGG - chr1_1:72996893-72996912 Msa0042240:intron 35.0%
CATTAAAATGTACTAGAGCG+TGG - chr1_1:72997160-72997179 Msa0042240:intron 35.0%
! TGAAACACTTTTCCATGACT+GGG - chr1_1:72997201-72997220 Msa0042240:CDS 35.0%
AAAAATCTGTTCTCTCTCCA+AGG - chr1_1:72997233-72997252 Msa0042240:CDS 35.0%
CAATTTCTCGAAAGAAATGG+AGG - chr1_1:72997513-72997532 Msa0042240:intron 35.0%
GATATTTGCTCAATAACGCA+TGG - chr1_1:72997706-72997725 Msa0042240:intron 35.0%
GACGTTACTACTATAAGTCA+TGG + chr1_1:72997933-72997952 None:intergenic 35.0%
CGGCTAACAAGAACAAAATA+TGG + chr1_1:72998117-72998136 None:intergenic 35.0%
CTGTTGTACTGGGATTTATT+GGG - chr1_1:72998144-72998163 Msa0042240:intron 35.0%
TATTGGGTGTAAGATGATCT+TGG - chr1_1:72998160-72998179 Msa0042240:intron 35.0%
! AAATTTGGTAACTGAACGAG+TGG + chr1_1:72998207-72998226 None:intergenic 35.0%
TCACATATTCTCGTTTGTAC+AGG - chr1_1:72998254-72998273 Msa0042240:intron 35.0%
CAGACTTAATATCACTCCAA+TGG + chr1_1:72998330-72998349 None:intergenic 35.0%
CATTGGAGTGATATTAAGTC+TGG - chr1_1:72998328-72998347 Msa0042240:intron 35.0%
!! GATATTTTCATTTGGGGTGT+GGG + chr1_1:72998441-72998460 None:intergenic 35.0%
CCGAGTATACAAGATGATAA+AGG + chr1_1:72998475-72998494 None:intergenic 35.0%
! TTGAAACTTTGGAGAGAAGG+GGG + chr1_1:72991713-72991732 None:intergenic 40.0%
TTGGCTTCTGTTGTTCACAA+TGG - chr1_1:72991761-72991780 Msa0042240:three_prime_UTR 40.0%
ATAATGCCCTTATCAGGATC+AGG - chr1_1:72991804-72991823 Msa0042240:three_prime_UTR 40.0%
TAATGCCCTTATCAGGATCA+GGG - chr1_1:72991805-72991824 Msa0042240:three_prime_UTR 40.0%
TGAAACCCTGATCCTGATAA+GGG + chr1_1:72991813-72991832 None:intergenic 40.0%
TTGAAACCCTGATCCTGATA+AGG + chr1_1:72991814-72991833 None:intergenic 40.0%
AGGAAAAGGAAGAGATAGGA+CGG + chr1_1:72991868-72991887 None:intergenic 40.0%
ATGGAGAATACCTGAGGAAA+AGG + chr1_1:72991882-72991901 None:intergenic 40.0%
TTCCATGTCTGTGATAACAG+TGG - chr1_1:72991964-72991983 Msa0042240:CDS 40.0%
ATCCACTGTTATCACAGACA+TGG + chr1_1:72991969-72991988 None:intergenic 40.0%
TGATACATGCAAGTGGTAGA+CGG + chr1_1:72992000-72992019 None:intergenic 40.0%
TAGGAATAAAAGGTGGACCT+TGG + chr1_1:72992643-72992662 None:intergenic 40.0%
! GCTTTTAGTCCTCTCTTGTT+TGG - chr1_1:72992681-72992700 Msa0042240:intron 40.0%
TCAAGGGCTAAACTAATCAC+GGG + chr1_1:72993000-72993019 None:intergenic 40.0%
CACCACCACTCATAAAATCA+AGG + chr1_1:72993017-72993036 None:intergenic 40.0%
!! TGTTAGAGCTGTAGCCTTAT+GGG - chr1_1:72993107-72993126 Msa0042240:intron 40.0%
! AAGGCATCAGAATTCTTTGC+TGG - chr1_1:72993284-72993303 Msa0042240:intron 40.0%
AGGCATCAGAATTCTTTGCT+GGG - chr1_1:72993285-72993304 Msa0042240:intron 40.0%
TGTAGTAGATCCTCTCTAGT+AGG - chr1_1:72993389-72993408 Msa0042240:intron 40.0%
ATGTGGAATGTGATTGGTGA+TGG + chr1_1:72993557-72993576 None:intergenic 40.0%
CACAAAATATTGGTGGGATG+TGG + chr1_1:72993574-72993593 None:intergenic 40.0%
!! CAAAGTGCCAGTTTTGTATC+AGG - chr1_1:72993962-72993981 Msa0042240:intron 40.0%
TGCATCACCTGATACAAAAC+TGG + chr1_1:72993972-72993991 None:intergenic 40.0%
CAGAATCGTGTACTTTCCTA+TGG - chr1_1:72994112-72994131 Msa0042240:intron 40.0%
GTACTTTCCTATGGTATTGC+TGG - chr1_1:72994121-72994140 Msa0042240:intron 40.0%
TTGAAAACACACCTGAATGG+TGG + chr1_1:72994188-72994207 None:intergenic 40.0%
TTGACAAGTAGGGATGTAGA+AGG + chr1_1:72994438-72994457 None:intergenic 40.0%
TTCTACATCCCTACTTGTCA+AGG - chr1_1:72994437-72994456 Msa0042240:CDS 40.0%
! AGTCACGAGGATCAAACTTT+TGG - chr1_1:72994589-72994608 Msa0042240:CDS 40.0%
AGCATTCCACAAAGGAACAA+TGG + chr1_1:72995214-72995233 None:intergenic 40.0%
ATTGTTCCTTTGTGGAATGC+TGG - chr1_1:72995213-72995232 Msa0042240:intron 40.0%
TCTAATCCAGCATTCCACAA+AGG + chr1_1:72995222-72995241 None:intergenic 40.0%
AACCATGCTGAATGAAAACC+AGG - chr1_1:72995286-72995305 Msa0042240:intron 40.0%
ACCATGCTGAATGAAAACCA+GGG - chr1_1:72995287-72995306 Msa0042240:intron 40.0%
ACCAGGGGATCATATATTGT+TGG - chr1_1:72995303-72995322 Msa0042240:intron 40.0%
AAATCAGGATGGGATATGGA+TGG - chr1_1:72995461-72995480 Msa0042240:CDS 40.0%
ACTGAGTTCAATAACGGCTA+CGG + chr1_1:72995698-72995717 None:intergenic 40.0%
!!! CTGCAGTTTTTGGTGTAACA+CGG - chr1_1:72995828-72995847 Msa0042240:intron 40.0%
!!! TGCAGTTTTTGGTGTAACAC+GGG - chr1_1:72995829-72995848 Msa0042240:intron 40.0%
TGTAACACGGGATCCATTTA+TGG - chr1_1:72995841-72995860 Msa0042240:intron 40.0%
GCTCCTTAAAGTTTGATACC+TGG - chr1_1:72995969-72995988 Msa0042240:CDS 40.0%
! GTTTTACTAGCAAGCTTTCC+AGG + chr1_1:72995990-72996009 None:intergenic 40.0%
AAGTCATTAACATGTGGAGC+TGG - chr1_1:72996124-72996143 Msa0042240:CDS 40.0%
!!! CACTTCATCCTTGGTGTTTT+TGG - chr1_1:72996465-72996484 Msa0042240:intron 40.0%
GCGACTTCATCCAAAAATAG+TGG - chr1_1:72996510-72996529 Msa0042240:intron 40.0%
TAACTCAACCCTTACCAAAC+CGG - chr1_1:72996665-72996684 Msa0042240:intron 40.0%
CTCGAAAATGTGCTTCTAAG+CGG + chr1_1:72996713-72996732 None:intergenic 40.0%
ATGGGATCCTACTTAGACAA+AGG + chr1_1:72996777-72996796 None:intergenic 40.0%
!! GGGAAAGTACTCTTCTTGAT+AGG - chr1_1:72996869-72996888 Msa0042240:intron 40.0%
! TCAAGGTGTTTCGCTATGTT+AGG + chr1_1:72997001-72997020 None:intergenic 40.0%
! GTGAAACACTTTTCCATGAC+TGG - chr1_1:72997200-72997219 Msa0042240:CDS 40.0%
TTTAATGGCTTACCCAGTCA+TGG + chr1_1:72997216-72997235 None:intergenic 40.0%
! AATTCTGAGTTGGCCTATGT+TGG - chr1_1:72997315-72997334 Msa0042240:intron 40.0%
! AAGGCACTAATTGCATGTTG+GGG + chr1_1:72997344-72997363 None:intergenic 40.0%
! CAAGGCACTAATTGCATGTT+GGG + chr1_1:72997345-72997364 None:intergenic 40.0%
! ACAAGGCACTAATTGCATGT+TGG + chr1_1:72997346-72997365 None:intergenic 40.0%
AGTGCCTTGTCCAATAGTAA+CGG - chr1_1:72997356-72997375 Msa0042240:intron 40.0%
ATTCCTTCGATGCGAAGAAA+CGG + chr1_1:72997400-72997419 None:intergenic 40.0%
ATGTAAGTCGGAGGTGAATA+GGG + chr1_1:72997660-72997679 None:intergenic 40.0%
! TAACGCATGGTCAAAGGTTT+TGG - chr1_1:72997719-72997738 Msa0042240:intron 40.0%
TGCATGGATAAATCTGTGCT+TGG - chr1_1:72997767-72997786 Msa0042240:intron 40.0%
AAATCCCAGTACAACAGCAA+TGG + chr1_1:72998141-72998160 None:intergenic 40.0%
GCTGTTGTACTGGGATTTAT+TGG - chr1_1:72998143-72998162 Msa0042240:intron 40.0%
TGTGAGAAGTTCAAGTACAG+AGG + chr1_1:72998239-72998258 None:intergenic 40.0%
TACAGGATTCCATGTCTCAA+CGG - chr1_1:72998271-72998290 Msa0042240:CDS 40.0%
GTGGGTAGAATTGGATTTCT+TGG + chr1_1:72998423-72998442 None:intergenic 40.0%
!! GGATATTTTCATTTGGGGTG+TGG + chr1_1:72998442-72998461 None:intergenic 40.0%
ATTAGCCAAATAGCCAACTG+AGG - chr1_1:72998525-72998544 Msa0042240:CDS 40.0%
! GAAGTGGAGTGTAGAGGTTT+TGG + chr1_1:72991840-72991859 None:intergenic 45.0%
CCTGAGGAAAAGGAAGAGAT+AGG + chr1_1:72991872-72991891 None:intergenic 45.0%
! CCTATCTCTTCCTTTTCCTC+AGG - chr1_1:72991869-72991888 Msa0042240:three_prime_UTR 45.0%
AGAGAGATGGAGAATACCTG+AGG + chr1_1:72991888-72991907 None:intergenic 45.0%
! AAGCTAGCCTGAAGAGCTTA+TGG - chr1_1:72992827-72992846 Msa0042240:intron 45.0%
! GCCCTTGATTTTATGAGTGG+TGG - chr1_1:72993012-72993031 Msa0042240:intron 45.0%
! CTGTTAGAGCTGTAGCCTTA+TGG - chr1_1:72993106-72993125 Msa0042240:intron 45.0%
CAGAGATTTACCCACCCATA+AGG + chr1_1:72993124-72993143 None:intergenic 45.0%
ACCAACACCAAATGCTACTG+CGG + chr1_1:72993240-72993259 None:intergenic 45.0%
!! AGTAGCATTTGGTGTTGGTG+TGG - chr1_1:72993241-72993260 Msa0042240:intron 45.0%
!! GTAGCATTTGGTGTTGGTGT+GGG - chr1_1:72993242-72993261 Msa0042240:intron 45.0%
! GTTGGTGTGGGTTTTACAGA+AGG - chr1_1:72993254-72993273 Msa0042240:intron 45.0%
AGTAGATCCTCTCTAGTAGG+AGG - chr1_1:72993392-72993411 Msa0042240:intron 45.0%
!! ATGTGATTGGTGATGGATGG+TGG + chr1_1:72993550-72993569 None:intergenic 45.0%
!! GGAATGTGATTGGTGATGGA+TGG + chr1_1:72993553-72993572 None:intergenic 45.0%
TCCTGCTTCTCCTGTGAATA+TGG - chr1_1:72993678-72993697 Msa0042240:intron 45.0%
TGACTAGTGACTTAGCGGTT+TGG - chr1_1:72993783-72993802 Msa0042240:intron 45.0%
ATTGGAGCAAAGTCTCTCAG+TGG - chr1_1:72993902-72993921 Msa0042240:intron 45.0%
AACTGCACCAGCAATACCAT+AGG + chr1_1:72994131-72994150 None:intergenic 45.0%
TGAGGCAGTCAACCTTCTAT+TGG - chr1_1:72994329-72994348 Msa0042240:intron 45.0%
GCAATATTGCGGCCAATAGA+AGG + chr1_1:72994344-72994363 None:intergenic 45.0%
AGCCCTAAGTAGCATGAAAG+AGG + chr1_1:72994522-72994541 None:intergenic 45.0%
! TTCATGCTACTTAGGGCTTG+AGG - chr1_1:72994524-72994543 Msa0042240:intron 45.0%
ATGAAGGAATGAGAGTCACG+AGG - chr1_1:72994576-72994595 Msa0042240:intron 45.0%
TCAACTCAGTGGTTGTACCA+AGG - chr1_1:72995107-72995126 Msa0042240:intron 45.0%
CAACTCAGTGGTTGTACCAA+GGG - chr1_1:72995108-72995127 Msa0042240:intron 45.0%
AACTCAGTGGTTGTACCAAG+GGG - chr1_1:72995109-72995128 Msa0042240:intron 45.0%
GTTGGTCCATTGTTCCTTTG+TGG - chr1_1:72995205-72995224 Msa0042240:intron 45.0%
CCATGCTGAATGAAAACCAG+GGG - chr1_1:72995288-72995307 Msa0042240:intron 45.0%
GCCAACAATATATGATCCCC+TGG + chr1_1:72995307-72995326 None:intergenic 45.0%
! AGGGATCAAACATTTTGGGC+AGG - chr1_1:72995654-72995673 Msa0042240:intron 45.0%
TACGGTAAGAAGCAAAGGTG+TGG + chr1_1:72995680-72995699 None:intergenic 45.0%
! GACTCGATACCTGCAGTTTT+TGG - chr1_1:72995818-72995837 Msa0042240:intron 45.0%
CGTGTTACACCAAAAACTGC+AGG + chr1_1:72995830-72995849 None:intergenic 45.0%
GCAAGATAGCTTACCCAGAA+TGG + chr1_1:72995888-72995907 None:intergenic 45.0%
TCATTAACATGTGGAGCTGG+AGG - chr1_1:72996127-72996146 Msa0042240:CDS 45.0%
!!! AAACTCACGTTGTTTTGGCC+TGG - chr1_1:72996541-72996560 Msa0042240:intron 45.0%
CTTTGCAATAATTCGGCTCC+AGG + chr1_1:72996562-72996581 None:intergenic 45.0%
! GGTTTGGTAAGGGTTGAGTT+AGG + chr1_1:72996666-72996685 None:intergenic 45.0%
!! CTTACAAGCCGGTTTGGTAA+GGG + chr1_1:72996676-72996695 None:intergenic 45.0%
GAAAATGTGCTTCTAAGCGG+CGG + chr1_1:72996710-72996729 None:intergenic 45.0%
AGCTATATCTCATCCAGCGA+GGG - chr1_1:72996731-72996750 Msa0042240:intron 45.0%
AAATGTACTAGAGCGTGGAC+CGG - chr1_1:72997165-72997184 Msa0042240:intron 45.0%
GTGCCTTGTCCAATAGTAAC+GGG - chr1_1:72997357-72997376 Msa0042240:intron 45.0%
TGCCTTGTCCAATAGTAACG+GGG - chr1_1:72997358-72997377 Msa0042240:intron 45.0%
TTTGGGTCCATTTGACGAGT+CGG - chr1_1:72997482-72997501 Msa0042240:intron 45.0%
GATGTAAGTCGGAGGTGAAT+AGG + chr1_1:72997661-72997680 None:intergenic 45.0%
TCGCAATTGATGTAAGTCGG+AGG + chr1_1:72997669-72997688 None:intergenic 45.0%
GCTCAATAACGCATGGTCAA+AGG - chr1_1:72997713-72997732 Msa0042240:intron 45.0%
! GTAGCCTCTAGTCTTTCCAT+TGG - chr1_1:72998311-72998330 Msa0042240:intron 45.0%
CACTCCAATGGAAAGACTAG+AGG + chr1_1:72998318-72998337 None:intergenic 45.0%
GAGCTCAACTCATTCTGAGT+TGG + chr1_1:72998379-72998398 None:intergenic 45.0%
! ATTTGGGGTGTGGGTAGAAT+TGG + chr1_1:72998432-72998451 None:intergenic 45.0%
TCTACAAAGGGTTCCTCAGT+TGG + chr1_1:72998541-72998560 None:intergenic 45.0%
ACCCTTTGTAGACTGTGCTA+TGG - chr1_1:72998549-72998568 Msa0042240:exon 45.0%
GCCATAGCACAGTCTACAAA+GGG + chr1_1:72998553-72998572 None:intergenic 45.0%
AGCCATAGCACAGTCTACAA+AGG + chr1_1:72998554-72998573 None:intergenic 45.0%
!!! AAAAAAAAAAAATAGATTTT+GGG + chr1_1:72992396-72992415 None:intergenic 5.0%
!!! AAAAAAAAAAAAATAGATTT+TGG + chr1_1:72992397-72992416 None:intergenic 5.0%
!!! TTAAAAATCATTTTTTTAAA+AGG - chr1_1:72992460-72992479 Msa0042240:intron 5.0%
!! AAAAAAATAAAAAAATTTAC+AGG + chr1_1:72992610-72992629 None:intergenic 5.0%
!! TTAAATAAAATGAAATTATT+AGG + chr1_1:72997859-72997878 None:intergenic 5.0%
CTGGCGCAAAACCAAAAGAG+TGG - chr1_1:72991672-72991691 Msa0042240:three_prime_UTR 50.0%
GTGAAGGAAGTGGAGTGTAG+AGG + chr1_1:72991846-72991865 None:intergenic 50.0%
AGATAGGACGGTGAAGGAAG+TGG + chr1_1:72991856-72991875 None:intergenic 50.0%
AGGAAGAGATAGGACGGTGA+AGG + chr1_1:72991862-72991881 None:intergenic 50.0%
!! TAGAGCTGTAGCCTTATGGG+TGG - chr1_1:72993110-72993129 Msa0042240:intron 50.0%
!! AGAGCTGTAGCCTTATGGGT+GGG - chr1_1:72993111-72993130 Msa0042240:intron 50.0%
GGTGGGATGTGGAATGTGAT+TGG + chr1_1:72993563-72993582 None:intergenic 50.0%
GCCATATTCACAGGAGAAGC+AGG + chr1_1:72993682-72993701 None:intergenic 50.0%
TCTTGGAACAGCCACCATTC+AGG - chr1_1:72994174-72994193 Msa0042240:intron 50.0%
ACTCAGTGGTTGTACCAAGG+GGG - chr1_1:72995110-72995129 Msa0042240:intron 50.0%
! TCATTGGTTGCATACCCCCT+TGG + chr1_1:72995127-72995146 None:intergenic 50.0%
!! CCCCTGGTTTTCATTCAGCA+TGG + chr1_1:72995291-72995310 None:intergenic 50.0%
ATTCTACTAGGCATGTGCCG+TGG - chr1_1:72995332-72995351 Msa0042240:intron 50.0%
ACGGCTACGGTAAGAAGCAA+AGG + chr1_1:72995685-72995704 None:intergenic 50.0%
GCAGGAAGCCAAAAACACCA+AGG + chr1_1:72996476-72996495 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTGGTA+AGG + chr1_1:72996677-72996696 None:intergenic 50.0%
!! CCTTACCAAACCGGCTTGTA+AGG - chr1_1:72996674-72996693 Msa0042240:intron 50.0%
!! TACCAAACCGGCTTGTAAGG+TGG - chr1_1:72996677-72996696 Msa0042240:intron 50.0%
!! ACCAAACCGGCTTGTAAGGT+GGG - chr1_1:72996678-72996697 Msa0042240:intron 50.0%
ATAGTCCCCACCTTACAAGC+CGG + chr1_1:72996687-72996706 None:intergenic 50.0%
GAGCTATATCTCATCCAGCG+AGG - chr1_1:72996730-72996749 Msa0042240:intron 50.0%
GTTGTTACAAAGTCCCTCGC+TGG + chr1_1:72996747-72996766 None:intergenic 50.0%
GTTTCACCCTTGCATTGCAC+CGG + chr1_1:72997187-72997206 None:intergenic 50.0%
GGAGCTACTTAGTTACCCCA+GGG + chr1_1:72997272-72997291 None:intergenic 50.0%
TGGAGCTACTTAGTTACCCC+AGG + chr1_1:72997273-72997292 None:intergenic 50.0%
! TCTGAGTTGGCCTATGTTGG+CGG - chr1_1:72997318-72997337 Msa0042240:intron 50.0%
GCCTTGTCCAATAGTAACGG+GGG - chr1_1:72997359-72997378 Msa0042240:intron 50.0%
ACCCCCGTTACTATTGGACA+AGG + chr1_1:72997363-72997382 None:intergenic 50.0%
CTACCGTTTCTTCGCATCGA+AGG - chr1_1:72997394-72997413 Msa0042240:intron 50.0%
TTGGGTCCATTTGACGAGTC+GGG - chr1_1:72997483-72997502 Msa0042240:intron 50.0%
CCCAGTACAACAGCAATGGA+CGG + chr1_1:72998137-72998156 None:intergenic 50.0%
! CCGTCCATTGCTGTTGTACT+GGG - chr1_1:72998134-72998153 Msa0042240:intron 50.0%
AGGATTCCATGTCTCAACGG+AGG - chr1_1:72998274-72998293 Msa0042240:CDS 50.0%
GGGTTCCTCAGTTGGCTATT+TGG + chr1_1:72998533-72998552 None:intergenic 50.0%
GGAGGAGAGAGAGAGAGAGA+TGG + chr1_1:72991901-72991920 None:intergenic 55.0%
GTTTGCGCCGCAGTAGCATT+TGG - chr1_1:72993230-72993249 Msa0042240:intron 55.0%
!! GCCGCAGTAGCATTTGGTGT+TGG - chr1_1:72993236-72993255 Msa0042240:intron 55.0%
!! CCAAACCGGCTTGTAAGGTG+GGG - chr1_1:72996679-72996698 Msa0042240:intron 55.0%
!! AGGGCTCTAGAGGATCTCCT+TGG + chr1_1:72997253-72997272 None:intergenic 55.0%
!! AAGGAGATCCTCTAGAGCCC+TGG - chr1_1:72997252-72997271 Msa0042240:CDS 55.0%
!! AGGAGATCCTCTAGAGCCCT+GGG - chr1_1:72997253-72997272 Msa0042240:CDS 55.0%
! TAGTTACCCCAGGGCTCTAG+AGG + chr1_1:72997263-72997282 None:intergenic 55.0%
!! AGAGGCACCCCCGTTACTAT+TGG + chr1_1:72997369-72997388 None:intergenic 55.0%
GAAGAAACGGTAGTGCGCAG+AGG + chr1_1:72997387-72997406 None:intergenic 55.0%
! GAGGATCCCGACTCGTCAAA+TGG + chr1_1:72997492-72997511 None:intergenic 55.0%
! GCCGTCCATTGCTGTTGTAC+TGG - chr1_1:72998133-72998152 Msa0042240:intron 55.0%
GAGATGCCTCCGTTGAGACA+TGG + chr1_1:72998283-72998302 None:intergenic 55.0%
!! GTCTCAACGGAGGCATCTCT+TGG - chr1_1:72998284-72998303 Msa0042240:CDS 55.0%
CCCCACCTTACAAGCCGGTT+TGG + chr1_1:72996682-72996701 None:intergenic 60.0%
CGTGGACCGGTGCAATGCAA+GGG - chr1_1:72997178-72997197 Msa0042240:intron 60.0%
!! GGAGATCCTCTAGAGCCCTG+GGG - chr1_1:72997254-72997273 Msa0042240:CDS 60.0%
CATGTTGGGGCCGCCAACAT+AGG + chr1_1:72997331-72997350 None:intergenic 60.0%
GCGTGGACCGGTGCAATGCA+AGG - chr1_1:72997177-72997196 Msa0042240:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72991646 72998667 72991646 ID=Msa0042240;Name=Msa0042240
chr1_1 mRNA 72991646 72998667 72991646 ID=Msa0042240-mRNA-1;Parent=Msa0042240;Name=Msa0042240-mRNA-1;_AED=0.10;_eAED=0.10;_QI=109|1|1|1|0.92|0.86|15|269|358
chr1_1 exon 72991646 72991704 72991646 ID=Msa0042240-mRNA-1:exon:24390;Parent=Msa0042240-mRNA-1
chr1_1 exon 72991736 72992037 72991736 ID=Msa0042240-mRNA-1:exon:24389;Parent=Msa0042240-mRNA-1
chr1_1 exon 72992122 72992179 72992122 ID=Msa0042240-mRNA-1:exon:24388;Parent=Msa0042240-mRNA-1
chr1_1 exon 72993970 72994028 72993970 ID=Msa0042240-mRNA-1:exon:24387;Parent=Msa0042240-mRNA-1
chr1_1 exon 72994420 72994498 72994420 ID=Msa0042240-mRNA-1:exon:24386;Parent=Msa0042240-mRNA-1
chr1_1 exon 72994581 72994637 72994581 ID=Msa0042240-mRNA-1:exon:24385;Parent=Msa0042240-mRNA-1
chr1_1 exon 72994831 72994880 72994831 ID=Msa0042240-mRNA-1:exon:24384;Parent=Msa0042240-mRNA-1
chr1_1 exon 72995447 72995528 72995447 ID=Msa0042240-mRNA-1:exon:24383;Parent=Msa0042240-mRNA-1
chr1_1 exon 72995933 72995989 72995933 ID=Msa0042240-mRNA-1:exon:24382;Parent=Msa0042240-mRNA-1
chr1_1 exon 72996118 72996198 72996118 ID=Msa0042240-mRNA-1:exon:24381;Parent=Msa0042240-mRNA-1
chr1_1 exon 72996330 72996417 72996330 ID=Msa0042240-mRNA-1:exon:24380;Parent=Msa0042240-mRNA-1
chr1_1 exon 72997007 72997083 72997007 ID=Msa0042240-mRNA-1:exon:24379;Parent=Msa0042240-mRNA-1
chr1_1 exon 72997185 72997273 72997185 ID=Msa0042240-mRNA-1:exon:24378;Parent=Msa0042240-mRNA-1
chr1_1 exon 72998258 72998329 72998258 ID=Msa0042240-mRNA-1:exon:24377;Parent=Msa0042240-mRNA-1
chr1_1 exon 72998423 72998667 72998423 ID=Msa0042240-mRNA-1:exon:24376;Parent=Msa0042240-mRNA-1
chr1_1 five_prime_UTR 72998559 72998667 72998559 ID=Msa0042240-mRNA-1:five_prime_utr;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72998423 72998558 72998423 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72998258 72998329 72998258 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72997185 72997273 72997185 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72997007 72997083 72997007 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72996330 72996417 72996330 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72996118 72996198 72996118 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72995933 72995989 72995933 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72995447 72995528 72995447 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72994831 72994880 72994831 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72994581 72994637 72994581 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72994420 72994498 72994420 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72993970 72994028 72993970 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72992122 72992179 72992122 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 CDS 72991946 72992037 72991946 ID=Msa0042240-mRNA-1:cds;Parent=Msa0042240-mRNA-1
chr1_1 three_prime_UTR 72991736 72991945 72991736 ID=Msa0042240-mRNA-1:three_prime_utr;Parent=Msa0042240-mRNA-1
chr1_1 three_prime_UTR 72991646 72991704 72991646 ID=Msa0042240-mRNA-1:three_prime_utr;Parent=Msa0042240-mRNA-1
Gene Sequence

>Msa0042240

ATGAGTTTGGCTTCTGTTGTTCACAATGGCATCCAAACTCCATTGAATCATAATGCCCTTATCAGGATCAGGGTTTCAAATTCCAAAACCTCTACACTCCACTTCCTTCACCGTCCTATCTCTTCCTTTTCCTCAGTGGATCGTTCTCTCCGTCTACCACTTGCATGTATCAAACAAATTCGTCAGCTTGATCGATTTCATTCTTCAGATGTGAAGAGAATTACTGCTCAACGAGATGATGAGATATCTTCTACTGAGGAGTCACAGAGTTCTGCTGTTAGAGCTGTAGCCTTATGGGTTTGCGCCGCAGTAGCATTTGGTGTTGGTGTGGGTTTTACAGAAGGTTATGAAAAGGCATCAGAATTCTTTGCTGGATACATATTGGAGCAAAGTCTCTCAGTGGATAATCTCTTTGTCTTTGTTCTAATATTCAAATACTTCAAAGTGCCAGTTTTGTATCAGAATCGTGTACTTTCCTATGGTATTGCTGGTGCAGTTGTTTTTCGCCTGATAATAATACTTCTTGGAACAGCCACCATTCAGAGGTTTGAGGCAGTCAACCTTCTATTGGCCGCAATATTGCTCTTCTCATCATTTAAGCTATTTGCTAGTGAAGAAGAAGAGTCAGACTTATCTGACAACTTTTTGGTGAAGACATGCCAGAAATTGATCCCTGTAACAACATATTATGATGGAAACAAGTTCATAACAAATCAGGATGGGATATGGATGGCCACACCTTTGCTTCTTACCGTAGCCGTTATTGAACTCAGTGACATTGCATTTGCAGTGGACTCGATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTATGGTGTTTTCTTCTAATCTTTTTGCCATTCTGGGTTTGAGGTCACTTTACATGATAATTTCTGAGGGTATGTCAGAATTGAAGTACTTACAGCCGTCCATTGCTGTTGTACTGGGATTTATTGGGTGTAAGATGATCTTGGACTATTTTGGATTCCATGTCTCAACGGAGGCATCTCTTGGTTTTGTAGCCTCTAGTCTTTCCATTGGAGTGATATTAAGTCTGGTTAACAAATCTGACTAG

Protein sequence

>Msa0042240

MSLASVVHNGIQTPLNHNALIRIRVSNSKTSTLHFLHRPISSFSSVDRSLRLPLACIKQIRQLDRFHSSDVKRITAQRDDEISSTEESQSSAVRAVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQNRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFKLFASEEEESDLSDNFLVKTCQKLIPVTTYYDGNKFITNQDGIWMATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFMVFSSNLFAILGLRSLYMIISEGMSELKYLQPSIAVVLGFIGCKMILDYFGFHVSTEASLGFVASSLSIGVILSLVNKSD*