AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372680 MtrunA17_Chr5g0393651 88.811 143 6 1 1 133 1 143 3.36e-78 227
Msa1372680 MtrunA17_Chr5g0408111 42.105 95 55 0 38 132 37 131 1.24e-24 91.7
Msa1372680 MtrunA17_Chr3g0099661 51.327 113 11 5 21 129 29 101 9.14e-19 81.3
Msa1372680 MtrunA17_Chr3g0100001 42.424 66 38 0 66 131 30 95 5.22e-17 70.9
Msa1372680 MtrunA17_Chr3g0100321 41.111 90 51 2 44 132 147 235 1.60e-15 71.2
Msa1372680 MtrunA17_Chr5g0402651 40.580 69 40 1 62 130 138 205 9.21e-15 69.3
Msa1372680 MtrunA17_Chr5g0402651 37.805 82 50 1 51 132 260 340 4.11e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372680 AT2G14880.1 55.944 143 50 6 1 132 1 141 4.54e-42 136
Msa1372680 AT4G34290.1 56.034 116 39 2 29 132 29 144 1.06e-34 117
Msa1372680 AT3G03590.1 52.564 78 37 0 55 132 63 140 2.26e-25 94.0
Msa1372680 AT1G31760.1 40.594 101 59 1 32 131 8 108 6.81e-25 92.0
Msa1372680 AT2G35605.1 47.253 91 48 0 41 131 15 105 1.26e-24 91.3
Msa1372680 AT2G14880.3 56.471 85 32 4 13 94 21 103 4.08e-21 82.0
Msa1372680 AT2G14880.2 56.471 85 32 4 13 94 21 103 4.08e-21 82.0
Msa1372680 AT4G26810.2 34.000 100 61 2 32 131 1 95 1.61e-15 67.8
Msa1372680 AT4G26810.1 34.000 100 61 2 32 131 1 95 1.61e-15 67.8
Msa1372680 AT4G22360.1 37.624 101 54 3 40 132 173 272 1.96e-15 71.6
Msa1372680 AT1G49520.1 37.209 86 50 2 45 130 243 324 1.93e-13 66.2
Msa1372680 AT1G49520.1 32.895 76 50 1 55 130 101 175 2.05e-11 60.5
Msa1372680 AT3G48600.1 33.019 106 67 2 32 133 8 113 6.39e-13 62.8
Msa1372680 AT3G19080.2 35.165 91 56 2 40 130 250 337 8.57e-13 64.3
Msa1372680 AT3G19080.2 34.211 76 49 1 55 130 115 189 1.30e-11 60.8
Msa1372680 AT3G48600.2 33.019 106 67 2 32 133 8 113 1.45e-12 62.8
Msa1372680 AT3G19080.4 34.783 92 57 2 40 131 250 338 1.56e-12 63.5
Msa1372680 AT3G19080.4 33.766 77 50 1 55 131 115 190 1.99e-11 60.5
Msa1372680 AT3G19080.3 34.783 92 57 2 40 131 250 338 1.56e-12 63.5
Msa1372680 AT3G19080.3 33.766 77 50 1 55 131 115 190 1.99e-11 60.5
Msa1372680 AT3G19080.1 34.783 92 57 2 40 131 250 338 1.61e-12 63.5
Msa1372680 AT3G19080.1 33.766 77 50 1 55 131 115 190 2.09e-11 60.5

Find 67 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAATGCTCTTGAGGGCT+TGG 0.201712 tig0019314:+12452 None:intergenic
GTGGCCTTTGCCTTCAATTA+AGG 0.272510 tig0019314:+11355 None:intergenic
GCTCTTGAGGGCTTGGGTTC+GGG 0.285856 tig0019314:+12459 None:intergenic
TGCTCTTGAGGGCTTGGGTT+CGG 0.309630 tig0019314:+12458 None:intergenic
CCCAAGCCCTCAAGAGCATT+TGG 0.313567 tig0019314:-12453 Msa1372680:CDS
GAGCATTTGGGCCCACATTA+AGG 0.313899 tig0019314:-12440 Msa1372680:CDS
CTTGGAGTCCTGAGAGTTAG+AGG 0.343205 tig0019314:+12643 None:intergenic
GTGTATGGAAGTGTTATATT+TGG 0.351425 tig0019314:-11286 Msa1372680:three_prime_UTR
CCAAATGCTCTTGAGGGCTT+GGG 0.352861 tig0019314:+12453 None:intergenic
GGCTTGGGTTCGGGAAATCT+CGG 0.358689 tig0019314:+12468 None:intergenic
GTTGATATGCTTGAGATTGC+TGG 0.364505 tig0019314:-11396 Msa1372680:CDS
GCCCTCACTTCCTTAATTGA+AGG 0.384410 tig0019314:-11365 Msa1372680:exon
CCGACGAGGTCTTGCATCTC+GGG 0.390790 tig0019314:+12496 None:intergenic
ATCATATGAAGGCCACGTTT+TGG 0.393931 tig0019314:-11308 Msa1372680:three_prime_UTR
AACTAAACCTTGAGACTTAG+TGG 0.395134 tig0019314:+11336 None:intergenic
TAAGGCTACTACTATGTTGC+AGG 0.405113 tig0019314:+11252 None:intergenic
GCCGACGAGGTCTTGCATCT+CGG 0.410466 tig0019314:+12495 None:intergenic
ACAGTTGAGCGGAGTGAGTA+AGG 0.429709 tig0019314:-12797 Msa1372680:five_prime_UTR
AAACTGAAGAAGGTATTTGC+AGG 0.431242 tig0019314:-11429 Msa1372680:CDS
CCAAGCCCTCAAGAGCATTT+GGG 0.438538 tig0019314:-12452 Msa1372680:CDS
GCTTGGGTTCGGGAAATCTC+GGG 0.463473 tig0019314:+12469 None:intergenic
TCCCACACCTTCGTTGCGTA+TGG 0.464306 tig0019314:-12611 Msa1372680:CDS
CATCTCCTCCTCTAACTCTC+AGG 0.478833 tig0019314:-12651 Msa1372680:CDS
TAGTACTTCAGGTACAGAAC+AGG 0.480293 tig0019314:-11214 Msa1372680:three_prime_UTR
TCGCTCGCTGTGAGTGAAGA+TGG 0.482080 tig0019314:-12704 Msa1372680:exon
CATTAAGGAACACAATCTTC+AGG 0.486338 tig0019314:-12425 Msa1372680:intron
GTCTCTCAGCCTCCACCCAC+CGG 0.498374 tig0019314:-12559 Msa1372680:CDS
GCCTTCAATTAAGGAAGTGA+GGG 0.502350 tig0019314:+11364 None:intergenic
GTGGGCCCAAATGCTCTTGA+GGG 0.503891 tig0019314:+12447 None:intergenic
CAGTTGAGCGGAGTGAGTAA+GGG 0.515067 tig0019314:-12796 Msa1372680:five_prime_UTR
AGGGTTTGAATAGAATAGAA+TGG 0.520766 tig0019314:+12726 None:intergenic
CTCTAACTCTCAGGACTCCA+AGG 0.525205 tig0019314:-12642 Msa1372680:CDS
TGTGGGCCCAAATGCTCTTG+AGG 0.532300 tig0019314:+12446 None:intergenic
GAAGATTGTGTTCCTTAATG+TGG 0.537334 tig0019314:+12428 None:intergenic
AGTGAAGATGGCGGTTTCAA+TGG 0.537531 tig0019314:-12692 Msa1372680:exon
AGGAGATGATAATAATAGTC+CGG 0.546560 tig0019314:+12666 None:intergenic
GGTGGGTGGAGGCTGAGAGA+CGG 0.548280 tig0019314:+12561 None:intergenic
CGGTGGCAGAAGTAACTGTT+CGG 0.553786 tig0019314:+12581 None:intergenic
TGCCTTCAATTAAGGAAGTG+AGG 0.555494 tig0019314:+11363 None:intergenic
AAGATTGTGTTCCTTAATGT+GGG 0.565657 tig0019314:+12429 None:intergenic
AGCCATACGCAACGAAGGTG+TGG 0.571765 tig0019314:+12609 None:intergenic
GCCATACGCAACGAAGGTGT+GGG 0.575259 tig0019314:+12610 None:intergenic
CTGTGATGAGAAACTGAAGA+AGG 0.578111 tig0019314:-11439 Msa1372680:CDS
ATGGCGGTTTCAATGGCTAC+CGG 0.582248 tig0019314:-12685 Msa1372680:CDS
AGTTGAGCGGAGTGAGTAAG+GGG 0.583079 tig0019314:-12795 Msa1372680:five_prime_UTR
GGGTGGAGGCTGAGAGACGG+TGG 0.583952 tig0019314:+12564 None:intergenic
GGTGTGGGAAACGCAAACCT+TGG 0.584167 tig0019314:+12625 None:intergenic
ATCTTCACTCACAGCGAGCG+AGG 0.586099 tig0019314:+12706 None:intergenic
AACTGAAGAAGGTATTTGCA+GGG 0.589332 tig0019314:-11428 Msa1372680:CDS
CCCACCGGAGGCAAAATTCG+CGG 0.592965 tig0019314:-12544 Msa1372680:CDS
ACTTCCTTAATTGAAGGCAA+AGG 0.598604 tig0019314:-11359 Msa1372680:exon
TCTTCACTCACAGCGAGCGA+GGG 0.606761 tig0019314:+12707 None:intergenic
GCAAAGGCCACTAAGTCTCA+AGG 0.608526 tig0019314:-11343 Msa1372680:three_prime_UTR
AAATCTCGGGTTGGCCGACG+AGG 0.609292 tig0019314:+12482 None:intergenic
GGGTTCGGGAAATCTCGGGT+TGG 0.610231 tig0019314:+12473 None:intergenic
TCTCAGCCTCCACCCACCGG+AGG 0.623094 tig0019314:-12556 Msa1372680:CDS
CGACGAGGTCTTGCATCTCG+GGG 0.623606 tig0019314:+12497 None:intergenic
TTGAGCGGAGTGAGTAAGGG+GGG 0.626354 tig0019314:-12793 Msa1372680:five_prime_UTR
CCCGAGATGCAAGACCTCGT+CGG 0.633591 tig0019314:-12496 Msa1372680:CDS
AGAAGGAGATAACAGTTGAG+CGG 0.660905 tig0019314:-12808 None:intergenic
CACTTCCATACACCAAAACG+TGG 0.663026 tig0019314:+11296 None:intergenic
TGAGCGGAGTGAGTAAGGGG+GGG 0.664442 tig0019314:-12792 Msa1372680:five_prime_UTR
GGAGTCCTGAGAGTTAGAGG+AGG 0.667796 tig0019314:+12646 None:intergenic
CTCGCTGTGAGTGAAGATGG+CGG 0.682218 tig0019314:-12701 Msa1372680:exon
GACGAGGTCTTGCATCTCGG+GGG 0.684378 tig0019314:+12498 None:intergenic
GTTGAGCGGAGTGAGTAAGG+GGG 0.689094 tig0019314:-12794 Msa1372680:five_prime_UTR
GCAGAAGTAACTGTTCGGAG+TGG 0.693933 tig0019314:+12586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATTAAA+AGG + tig0019314:12733-12752 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG - tig0019314:12735-12754 Msa1372680:five_prime_UTR 0.0%
!! TAATAATAATAATAATTAAA+AGG + tig0019314:12733-12752 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG - tig0019314:12735-12754 Msa1372680:five_prime_UTR 0.0%
!!! ATTATTATTAGGTTTTTTAT+TGG - tig0019314:12746-12765 Msa1372680:five_prime_UTR 10.0%
!!! ATTATTATTAGGTTTTTTAT+TGG - tig0019314:12746-12765 Msa1372680:five_prime_UTR 10.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG + tig0019314:11502-11521 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG + tig0019314:11525-11544 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG - tig0019314:11812-11831 Msa1372680:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG - tig0019314:11813-11832 Msa1372680:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG - tig0019314:12542-12561 Msa1372680:CDS 15.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG + tig0019314:11502-11521 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG + tig0019314:11525-11544 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG - tig0019314:11812-11831 Msa1372680:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG - tig0019314:11813-11832 Msa1372680:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG - tig0019314:12542-12561 Msa1372680:CDS 15.0%
!! TAAGTTGTTAGTTATTAAGA+TGG - tig0019314:11577-11596 Msa1372680:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG + tig0019314:11661-11680 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG - tig0019314:11698-11717 Msa1372680:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG - tig0019314:11709-11728 Msa1372680:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG - tig0019314:11710-11729 Msa1372680:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG + tig0019314:11795-11814 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG - tig0019314:12016-12035 Msa1372680:intron 20.0%
!! AACATGTAGTTAAGATTATA+TGG + tig0019314:12076-12095 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG + tig0019314:12630-12649 None:intergenic 20.0%
!! TAAGTTGTTAGTTATTAAGA+TGG - tig0019314:11577-11596 Msa1372680:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG + tig0019314:11661-11680 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG - tig0019314:11698-11717 Msa1372680:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG - tig0019314:11709-11728 Msa1372680:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG - tig0019314:11710-11729 Msa1372680:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG + tig0019314:11795-11814 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG - tig0019314:12016-12035 Msa1372680:intron 20.0%
!! AACATGTAGTTAAGATTATA+TGG + tig0019314:12076-12095 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG + tig0019314:12630-12649 None:intergenic 20.0%
!! ACAAATAATTTGTACGGTTT+AGG + tig0019314:11519-11538 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG + tig0019314:11693-11712 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG + tig0019314:11842-11861 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG - tig0019314:12048-12067 Msa1372680:intron 25.0%
! CATTCAATTTATGGATGATA+CGG + tig0019314:12271-12290 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG - tig0019314:12636-12655 Msa1372680:CDS 25.0%
! GATTATTTATTATTCTGCTC+AGG - tig0019314:12806-12825 Msa1372680:five_prime_UTR 25.0%
!! ACAAATAATTTGTACGGTTT+AGG + tig0019314:11519-11538 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG + tig0019314:11693-11712 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG + tig0019314:11842-11861 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG - tig0019314:12048-12067 Msa1372680:intron 25.0%
! CATTCAATTTATGGATGATA+CGG + tig0019314:12271-12290 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG - tig0019314:12636-12655 Msa1372680:CDS 25.0%
AGGGTTTGAATAGAATAGAA+TGG + tig0019314:11138-11157 None:intergenic 30.0%
AGGAGATGATAATAATAGTC+CGG + tig0019314:11198-11217 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG + tig0019314:11435-11454 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG - tig0019314:11554-11573 Msa1372680:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG - tig0019314:11676-11695 Msa1372680:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG - tig0019314:11728-11747 Msa1372680:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG - tig0019314:11729-11748 Msa1372680:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG + tig0019314:11826-11845 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG + tig0019314:11981-12000 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG - tig0019314:12029-12048 Msa1372680:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG - tig0019314:12276-12295 Msa1372680:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG - tig0019314:12277-12296 Msa1372680:intron 30.0%
!! GTGTATGGAAGTGTTATATT+TGG - tig0019314:12575-12594 Msa1372680:CDS 30.0%
AGGGTTTGAATAGAATAGAA+TGG + tig0019314:11138-11157 None:intergenic 30.0%
AGGAGATGATAATAATAGTC+CGG + tig0019314:11198-11217 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG + tig0019314:11435-11454 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG - tig0019314:11554-11573 Msa1372680:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG - tig0019314:11676-11695 Msa1372680:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG - tig0019314:11728-11747 Msa1372680:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG - tig0019314:11729-11748 Msa1372680:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG + tig0019314:11826-11845 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG + tig0019314:11981-12000 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG - tig0019314:12029-12048 Msa1372680:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG - tig0019314:12276-12295 Msa1372680:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG - tig0019314:12277-12296 Msa1372680:intron 30.0%
!! GTGTATGGAAGTGTTATATT+TGG - tig0019314:12575-12594 Msa1372680:CDS 30.0%
GAAGATTGTGTTCCTTAATG+TGG + tig0019314:11436-11455 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG - tig0019314:11436-11455 Msa1372680:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG + tig0019314:11474-11493 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG - tig0019314:11719-11738 Msa1372680:intron 35.0%
GGGAATAATCGGTTATTATG+GGG - tig0019314:11730-11749 Msa1372680:intron 35.0%
GGAATAATCGGTTATTATGG+GGG - tig0019314:11731-11750 Msa1372680:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG - tig0019314:11745-11764 Msa1372680:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG - tig0019314:11746-11765 Msa1372680:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG + tig0019314:11893-11912 None:intergenic 35.0%
AAAGCAGAGTTAGTACTTGA+TGG + tig0019314:11957-11976 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG + tig0019314:12280-12299 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG + tig0019314:12319-12338 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG + tig0019314:12329-12348 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG + tig0019314:12401-12420 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG - tig0019314:12432-12451 Msa1372680:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG - tig0019314:12433-12452 Msa1372680:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG - tig0019314:12502-12521 Msa1372680:CDS 35.0%
AACTAAACCTTGAGACTTAG+TGG + tig0019314:12528-12547 None:intergenic 35.0%
GAAGATTGTGTTCCTTAATG+TGG + tig0019314:11436-11455 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG - tig0019314:11436-11455 Msa1372680:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG + tig0019314:11474-11493 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG - tig0019314:11719-11738 Msa1372680:intron 35.0%
GGGAATAATCGGTTATTATG+GGG - tig0019314:11730-11749 Msa1372680:intron 35.0%
GGAATAATCGGTTATTATGG+GGG - tig0019314:11731-11750 Msa1372680:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG - tig0019314:11745-11764 Msa1372680:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG - tig0019314:11746-11765 Msa1372680:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG + tig0019314:11893-11912 None:intergenic 35.0%
AAAGCAGAGTTAGTACTTGA+TGG + tig0019314:11957-11976 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG + tig0019314:12280-12299 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG + tig0019314:12319-12338 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG + tig0019314:12329-12348 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG + tig0019314:12401-12420 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG - tig0019314:12432-12451 Msa1372680:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG - tig0019314:12433-12452 Msa1372680:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG - tig0019314:12502-12521 Msa1372680:CDS 35.0%
AACTAAACCTTGAGACTTAG+TGG + tig0019314:12528-12547 None:intergenic 35.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG + tig0019314:11353-11372 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG - tig0019314:11468-11487 Msa1372680:CDS 40.0%
GTCTGTACAAGAGTAGTTGT+AGG + tig0019314:12222-12241 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG + tig0019314:12311-12330 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG - tig0019314:12340-12359 Msa1372680:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG - tig0019314:12391-12410 Msa1372680:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG + tig0019314:12402-12421 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG - tig0019314:12422-12441 Msa1372680:intron 40.0%
GTTGATATGCTTGAGATTGC+TGG - tig0019314:12465-12484 Msa1372680:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG + tig0019314:12500-12519 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG + tig0019314:12501-12520 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG - tig0019314:12553-12572 Msa1372680:CDS 40.0%
TAAGGCTACTACTATGTTGC+AGG + tig0019314:12612-12631 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG - tig0019314:12647-12666 Msa1372680:CDS 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG + tig0019314:11353-11372 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG - tig0019314:11468-11487 Msa1372680:CDS 40.0%
GTCTGTACAAGAGTAGTTGT+AGG + tig0019314:12222-12241 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG + tig0019314:12311-12330 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG - tig0019314:12340-12359 Msa1372680:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG - tig0019314:12391-12410 Msa1372680:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG + tig0019314:12402-12421 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG - tig0019314:12422-12441 Msa1372680:intron 40.0%
GTTGATATGCTTGAGATTGC+TGG - tig0019314:12465-12484 Msa1372680:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG + tig0019314:12500-12519 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG + tig0019314:12501-12520 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG - tig0019314:12553-12572 Msa1372680:CDS 40.0%
TAAGGCTACTACTATGTTGC+AGG + tig0019314:12612-12631 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG - tig0019314:12647-12666 Msa1372680:CDS 40.0%
! AGTGAAGATGGCGGTTTCAA+TGG - tig0019314:11169-11188 Msa1372680:three_prime_UTR 45.0%
! AATACCGCGAATTTTGCCTC+CGG + tig0019314:11324-11343 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG - tig0019314:12496-12515 Msa1372680:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG + tig0019314:12509-12528 None:intergenic 45.0%
CACTTCCATACACCAAAACG+TGG + tig0019314:12568-12587 None:intergenic 45.0%
! AGTGAAGATGGCGGTTTCAA+TGG - tig0019314:11169-11188 Msa1372680:three_prime_UTR 45.0%
! AATACCGCGAATTTTGCCTC+CGG + tig0019314:11324-11343 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG - tig0019314:12496-12515 Msa1372680:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG + tig0019314:12509-12528 None:intergenic 45.0%
CACTTCCATACACCAAAACG+TGG + tig0019314:12568-12587 None:intergenic 45.0%
ACAGTTGAGCGGAGTGAGTA+AGG - tig0019314:11064-11083 Msa1372680:three_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG - tig0019314:11065-11084 Msa1372680:three_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG - tig0019314:11066-11085 Msa1372680:three_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG - tig0019314:11176-11195 Msa1372680:three_prime_UTR 50.0%
CATCTCCTCCTCTAACTCTC+AGG - tig0019314:11210-11229 Msa1372680:three_prime_UTR 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG + tig0019314:11221-11240 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG - tig0019314:11219-11238 Msa1372680:three_prime_UTR 50.0%
GCAGAAGTAACTGTTCGGAG+TGG + tig0019314:11278-11297 None:intergenic 50.0%
CGGTGGCAGAAGTAACTGTT+CGG + tig0019314:11283-11302 None:intergenic 50.0%
CCAAATGCTCTTGAGGGCTT+GGG + tig0019314:11411-11430 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG - tig0019314:11409-11428 Msa1372680:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG - tig0019314:11421-11440 Msa1372680:CDS 50.0%
GGCTGCAGCAGAAAATTGTG+AGG - tig0019314:11767-11786 Msa1372680:intron 50.0%
AACCTGTCTGTCTGTCTGTC+TGG - tig0019314:11931-11950 Msa1372680:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG - tig0019314:12518-12537 Msa1372680:CDS 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG - tig0019314:12560-12579 Msa1372680:CDS 50.0%
ACAGTTGAGCGGAGTGAGTA+AGG - tig0019314:11064-11083 Msa1372680:three_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG - tig0019314:11065-11084 Msa1372680:three_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG - tig0019314:11066-11085 Msa1372680:three_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG - tig0019314:11176-11195 Msa1372680:three_prime_UTR 50.0%
CATCTCCTCCTCTAACTCTC+AGG - tig0019314:11210-11229 Msa1372680:three_prime_UTR 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG + tig0019314:11221-11240 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG - tig0019314:11219-11238 Msa1372680:three_prime_UTR 50.0%
GCAGAAGTAACTGTTCGGAG+TGG + tig0019314:11278-11297 None:intergenic 50.0%
CGGTGGCAGAAGTAACTGTT+CGG + tig0019314:11283-11302 None:intergenic 50.0%
CCAAATGCTCTTGAGGGCTT+GGG + tig0019314:11411-11430 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG - tig0019314:11409-11428 Msa1372680:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG - tig0019314:11421-11440 Msa1372680:CDS 50.0%
GGCTGCAGCAGAAAATTGTG+AGG - tig0019314:11767-11786 Msa1372680:intron 50.0%
AACCTGTCTGTCTGTCTGTC+TGG - tig0019314:11931-11950 Msa1372680:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG - tig0019314:12518-12537 Msa1372680:CDS 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG - tig0019314:12560-12579 Msa1372680:CDS 50.0%
GTTGAGCGGAGTGAGTAAGG+GGG - tig0019314:11067-11086 Msa1372680:three_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG - tig0019314:11068-11087 Msa1372680:three_prime_UTR 55.0%
GAGTAAGGGGGGGATAGTGT+TGG - tig0019314:11079-11098 Msa1372680:three_prime_UTR 55.0%
TCTTCACTCACAGCGAGCGA+GGG + tig0019314:11157-11176 None:intergenic 55.0%
ATCTTCACTCACAGCGAGCG+AGG + tig0019314:11158-11177 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG - tig0019314:11157-11176 Msa1372680:three_prime_UTR 55.0%
CTCGCTGTGAGTGAAGATGG+CGG - tig0019314:11160-11179 Msa1372680:three_prime_UTR 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG + tig0019314:11218-11237 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG + tig0019314:11239-11258 None:intergenic 55.0%
TCCCACACCTTCGTTGCGTA+TGG - tig0019314:11250-11269 Msa1372680:three_prime_UTR 55.0%
! GCCATACGCAACGAAGGTGT+GGG + tig0019314:11254-11273 None:intergenic 55.0%
AGCCATACGCAACGAAGGTG+TGG + tig0019314:11255-11274 None:intergenic 55.0%
AGTGGAGCCATACGCAACGA+AGG + tig0019314:11260-11279 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG + tig0019314:11395-11414 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG + tig0019314:11396-11415 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG + tig0019314:11406-11425 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG - tig0019314:11408-11427 Msa1372680:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG + tig0019314:11412-11431 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG + tig0019314:11417-11436 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG + tig0019314:11418-11437 None:intergenic 55.0%
GTTGAGCGGAGTGAGTAAGG+GGG - tig0019314:11067-11086 Msa1372680:three_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG - tig0019314:11068-11087 Msa1372680:three_prime_UTR 55.0%
GAGTAAGGGGGGGATAGTGT+TGG - tig0019314:11079-11098 Msa1372680:three_prime_UTR 55.0%
TCTTCACTCACAGCGAGCGA+GGG + tig0019314:11157-11176 None:intergenic 55.0%
ATCTTCACTCACAGCGAGCG+AGG + tig0019314:11158-11177 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG - tig0019314:11157-11176 Msa1372680:three_prime_UTR 55.0%
CTCGCTGTGAGTGAAGATGG+CGG - tig0019314:11160-11179 Msa1372680:three_prime_UTR 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG + tig0019314:11218-11237 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG + tig0019314:11239-11258 None:intergenic 55.0%
TCCCACACCTTCGTTGCGTA+TGG - tig0019314:11250-11269 Msa1372680:three_prime_UTR 55.0%
! GCCATACGCAACGAAGGTGT+GGG + tig0019314:11254-11273 None:intergenic 55.0%
AGCCATACGCAACGAAGGTG+TGG + tig0019314:11255-11274 None:intergenic 55.0%
AGTGGAGCCATACGCAACGA+AGG + tig0019314:11260-11279 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG + tig0019314:11395-11414 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG + tig0019314:11396-11415 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG + tig0019314:11406-11425 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG - tig0019314:11408-11427 Msa1372680:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG + tig0019314:11412-11431 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG + tig0019314:11417-11436 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG + tig0019314:11418-11437 None:intergenic 55.0%
TGAGCGGAGTGAGTAAGGGG+GGG - tig0019314:11069-11088 Msa1372680:three_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG + tig0019314:11314-11333 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG + tig0019314:11317-11336 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG + tig0019314:11320-11339 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG - tig0019314:11317-11336 Msa1372680:three_prime_UTR 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG + tig0019314:11321-11340 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG + tig0019314:11366-11385 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG + tig0019314:11367-11386 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG + tig0019314:11368-11387 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG - tig0019314:11365-11384 Msa1372680:exon 60.0%
GCCGACGAGGTCTTGCATCT+CGG + tig0019314:11369-11388 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG + tig0019314:11382-11401 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG + tig0019314:11391-11410 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG + tig0019314:11405-11424 None:intergenic 60.0%
GGCCAGACAGACAGACAGAC+AGG + tig0019314:11936-11955 None:intergenic 60.0%
TGAGCGGAGTGAGTAAGGGG+GGG - tig0019314:11069-11088 Msa1372680:three_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG + tig0019314:11314-11333 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG + tig0019314:11317-11336 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG + tig0019314:11320-11339 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG - tig0019314:11317-11336 Msa1372680:three_prime_UTR 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG + tig0019314:11321-11340 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG + tig0019314:11366-11385 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG + tig0019314:11367-11386 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG + tig0019314:11368-11387 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG - tig0019314:11365-11384 Msa1372680:exon 60.0%
GCCGACGAGGTCTTGCATCT+CGG + tig0019314:11369-11388 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG + tig0019314:11382-11401 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG + tig0019314:11391-11410 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG + tig0019314:11405-11424 None:intergenic 60.0%
GGCCAGACAGACAGACAGAC+AGG + tig0019314:11936-11955 None:intergenic 60.0%
GGTGGGTGGAGGCTGAGAGA+CGG + tig0019314:11303-11322 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG - tig0019314:11302-11321 Msa1372680:three_prime_UTR 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG + tig0019314:11303-11322 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG - tig0019314:11302-11321 Msa1372680:three_prime_UTR 65.0%
GGGTGGAGGCTGAGAGACGG+TGG + tig0019314:11300-11319 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG - tig0019314:11305-11324 Msa1372680:three_prime_UTR 70.0%
GGGTGGAGGCTGAGAGACGG+TGG + tig0019314:11300-11319 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG - tig0019314:11305-11324 Msa1372680:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0019314 gene 11057 12826 11057 ID=Msa1372680;Name=Msa1372680
tig0019314 mRNA 11057 12826 11057 ID=Msa1372680-mRNA-1;Parent=Msa1372680;Name=Msa1372680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=119|1|1|1|1|1|2|311|133
tig0019314 exon 11057 11487 11057 ID=Msa1372680-mRNA-1:exon:2899;Parent=Msa1372680-mRNA-1
tig0019314 exon 12426 12826 12426 ID=Msa1372680-mRNA-1:exon:2898;Parent=Msa1372680-mRNA-1
tig0019314 five_prime_UTR 12708 12826 12708 ID=Msa1372680-mRNA-1:five_prime_utr;Parent=Msa1372680-mRNA-1
tig0019314 CDS 12426 12707 12426 ID=Msa1372680-mRNA-1:cds;Parent=Msa1372680-mRNA-1
tig0019314 CDS 11368 11487 11368 ID=Msa1372680-mRNA-1:cds;Parent=Msa1372680-mRNA-1
tig0019314 three_prime_UTR 11057 11367 11057 ID=Msa1372680-mRNA-1:three_prime_utr;Parent=Msa1372680-mRNA-1
Gene Sequence

>Msa1372680

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCGTTGCGTATGGCTCCACTCCGAACAGTTACTTCTGCCACCGTCTCTCAGCCTCCACCCACCGGAGGCAAAATTCGCGGTATTATGAAACCTAAAAAAATCTCCCCCGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>Msa1372680

MAVSMATGLLLSSPPLTLRTPRFAFPTPSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*