AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118460 MtrunA17_Chr7g0253961 98.339 542 9 0 1 542 1 542 0.0 1085
Msa1118460 MtrunA17_Chr5g0436831 30.561 517 294 15 10 503 5 479 2.01e-53 189
Msa1118460 MtrunA17_Chr4g0003211 27.912 455 272 15 93 525 162 582 6.48e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118460 AT5G35220.1 68.384 563 142 8 1 542 1 548 0.0 750
Msa1118460 AT5G35210.1 89.431 123 13 0 329 451 1543 1665 3.64e-63 225
Msa1118460 AT5G05740.2 27.664 535 341 12 2 525 13 512 1.39e-47 174
Msa1118460 AT5G05740.3 27.444 532 343 12 2 525 13 509 1.06e-46 171
Msa1118460 AT5G05740.1 31.865 386 231 8 141 525 187 541 7.54e-44 164
Msa1118460 AT1G17870.1 28.953 449 275 13 93 525 132 552 4.54e-31 127

Find 168 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCTTCTGTTGGTTGTT+TGG 0.167253 7_3:-67118829 None:intergenic
TTCACTGCTCATTATAAATA+TGG 0.190155 7_3:-67123960 None:intergenic
CTACAACCTTTCTAAATAAA+TGG 0.216107 7_3:-67124101 None:intergenic
CTGTTGTTTCTTCTCACTAT+TGG 0.217624 7_3:+67120691 Msa1118460:CDS
TGGCCTCAACTAGCCGATTT+TGG 0.220465 7_3:-67120519 None:intergenic
TCTTGACTCTTCTTCCTGTT+TGG 0.224026 7_3:+67123863 Msa1118460:CDS
TGCCAAAGTGTTGTTTCTTC+TGG 0.226330 7_3:-67120652 None:intergenic
CTTGACTCTTCTTCCTGTTT+GGG 0.253391 7_3:+67123864 Msa1118460:CDS
TCAGCTTCTGTTGGTTGTTT+GGG 0.253738 7_3:-67118828 None:intergenic
GGATATAGCATCTCCATATC+TGG 0.256518 7_3:-67120972 None:intergenic
ATGTTCTTGCAGGGTGCTTT+TGG 0.266459 7_3:+67123306 Msa1118460:intron
TGGACCTCTTTCACTTGCTT+GGG 0.275717 7_3:+67123646 Msa1118460:CDS
TTTCAAGGTTCTTTGCTACT+TGG 0.284871 7_3:+67122258 Msa1118460:CDS
CAGTCATCTTTGTCCTCACT+TGG 0.286074 7_3:+67120280 Msa1118460:intron
GTGGACCTCTTTCACTTGCT+TGG 0.295844 7_3:+67123645 Msa1118460:CDS
TCACTTGCGGGTCCCTTTGC+TGG 0.297100 7_3:+67122141 Msa1118460:CDS
CATATCACTCTTGGCAGCTT+TGG 0.315889 7_3:+67121870 Msa1118460:CDS
CAAAGCTGCCAAGAGTGATA+TGG 0.318828 7_3:-67121869 None:intergenic
GTGCTTCAACTTTGCCCATT+TGG 0.319416 7_3:-67119088 None:intergenic
CGTGTTCCATTTCCGTGTTA+TGG 0.324339 7_3:+67118874 Msa1118460:five_prime_UTR
GGATGAGCTTGCAGAGGAAC+TGG 0.328392 7_3:+67123885 Msa1118460:CDS
AAAGGTGCACTAATGGTCTT+TGG 0.336558 7_3:+67123330 Msa1118460:CDS
AACCGGTTCACTGTTCCTTC+AGG 0.362957 7_3:+67119025 Msa1118460:CDS
TGCTGATGTAAAGAAAATTA+AGG 0.367055 7_3:+67120375 Msa1118460:CDS
GTCAAGAATTTCACTAGTAC+TGG 0.371868 7_3:-67120927 None:intergenic
AATTGAATTAACCTTTCCTT+TGG 0.375547 7_3:-67124007 None:intergenic
TCCAGATGTAGCTGGAGATT+TGG 0.375838 7_3:+67122215 Msa1118460:CDS
CTATACTGAAGCCCCAGATA+TGG 0.376906 7_3:+67120959 Msa1118460:CDS
ATTCACCCTCTCGTGATTGC+AGG 0.379831 7_3:+67122591 Msa1118460:CDS
TTCGCCAAAAGGCTCCTCTT+TGG 0.384706 7_3:-67120431 None:intergenic
CTTCCAGTGGGGTGCCTTGA+CGG 0.386309 7_3:+67122776 Msa1118460:CDS
TCTACTTGAGTACTTCTATC+AGG 0.390353 7_3:-67122114 None:intergenic
GTGACCAAAGAGGAGCCTTT+TGG 0.390497 7_3:+67120427 Msa1118460:CDS
CCTCTAGCATATGGCGTCTT+GGG 0.391202 7_3:+67121014 Msa1118460:CDS
AACCGGAACTCTGAGTTTAG+AGG 0.402939 7_3:-67119000 None:intergenic
CACTTATACATTGCTAGGGC+TGG 0.407316 7_3:+67123359 Msa1118460:CDS
AGTTGATTCTTTCAAACTCA+TGG 0.408022 7_3:+67120324 Msa1118460:CDS
TCAATTCACATGTATCCAAA+TGG 0.408058 7_3:+67119073 Msa1118460:CDS
TTGACCACTTATACATTGCT+AGG 0.408680 7_3:+67123354 Msa1118460:CDS
AAGCATGTTAAAAGCTTGTA+TGG 0.409658 7_3:-67122756 None:intergenic
CGTGGCCCACCCCGTGGATC+AGG 0.411187 7_3:-67120592 None:intergenic
GTTGATGATGAAGGGGAAAA+TGG 0.411321 7_3:+67119159 Msa1118460:CDS
TTCATTCCCCATATCACTCT+TGG 0.411866 7_3:+67121861 Msa1118460:CDS
CAGGTTCCTCTACCATAAAA+AGG 0.413689 7_3:-67120558 None:intergenic
GGTGGGCCACGTGTTAGCTT+TGG 0.415291 7_3:+67120604 Msa1118460:CDS
ACCTCTAGCATATGGCGTCT+TGG 0.416734 7_3:+67121013 Msa1118460:CDS
TATGGGCCATTTATTTAGAA+AGG 0.416868 7_3:+67124095 Msa1118460:three_prime_UTR
TGGGGTGCCTTGACGGTGGC+AGG 0.417438 7_3:+67122783 Msa1118460:CDS
GCAATCACGAGAGGGTGAAT+TGG 0.421734 7_3:-67122588 None:intergenic
GTTCCTAGCATGTTGTTTCA+AGG 0.423181 7_3:+67122243 Msa1118460:CDS
GGATCAGGACTGTCTGAATC+AGG 0.423642 7_3:-67120577 None:intergenic
CAGCTTTGGTGCTATTACTC+AGG 0.424343 7_3:+67121884 Msa1118460:CDS
AGCAGTGAAATGAAATATAT+AGG 0.433869 7_3:+67123974 Msa1118460:three_prime_UTR
AACCCCTTCCACTTCTCAAC+GGG 0.438474 7_3:+67119260 Msa1118460:CDS
AACAGTGAACCGGTTTGAAC+CGG 0.439164 7_3:-67119017 None:intergenic
TCATTTAAGCATGGTTTCTC+CGG 0.439754 7_3:-67123781 None:intergenic
CAAGTAGACATATCACTTGC+GGG 0.440482 7_3:+67122129 Msa1118460:CDS
AAAGCTGCCAAGAGTGATAT+GGG 0.447341 7_3:-67121868 None:intergenic
TTCCTGAAGGAACAGTGAAC+CGG 0.447813 7_3:-67119027 None:intergenic
TCTGGGGCTTCAGTATAGTT+AGG 0.447919 7_3:-67120954 None:intergenic
CTCCTCTTTGGTCACCCAAA+AGG 0.448155 7_3:-67120419 None:intergenic
TCCCTCTAAACTCAGAGTTC+CGG 0.449415 7_3:+67118998 Msa1118460:CDS
TTGACACCATAACACGGAAA+TGG 0.451753 7_3:-67118880 None:intergenic
TTCAAACTCATGGAACTCCT+TGG 0.452837 7_3:+67120334 Msa1118460:CDS
CTCAGAGTTCCGGTTCAAAC+CGG 0.459234 7_3:+67119008 Msa1118460:CDS
TCTGCAAGCTCATCCCAAAC+AGG 0.459412 7_3:-67123877 None:intergenic
ACATGGAGACAGACATTTGT+GGG 0.464417 7_3:+67123820 Msa1118460:CDS
TTAAAGCCTCTATCTTCATC+AGG 0.470504 7_3:-67119222 None:intergenic
CAATTCACATGTATCCAAAT+GGG 0.473183 7_3:+67119074 Msa1118460:CDS
GATATAGCATCTCCATATCT+GGG 0.477330 7_3:-67120971 None:intergenic
ACCAAATCTCCAGCTACATC+TGG 0.477559 7_3:-67122216 None:intergenic
CCTTCTCCCAGTTCGCCAAA+AGG 0.479004 7_3:-67120442 None:intergenic
TCAGCAGGATCAACCTTCTC+AGG 0.479830 7_3:-67120358 None:intergenic
TGACGGTGGCAGGTCTGTGC+AGG 0.486800 7_3:+67122793 Msa1118460:CDS
GACGTTGCGGTTCAGAGGGA+TGG 0.488357 7_3:-67118905 None:intergenic
TAGCTTTGGTTTGCTGCGTA+AGG 0.490822 7_3:+67120618 Msa1118460:CDS
GGAGGTAGGAATTGCATCTC+AGG 0.495996 7_3:+67120723 Msa1118460:CDS
AAGTGTTGTTTCTTCTGGCT+CGG 0.498944 7_3:-67120647 None:intergenic
ACACTCTTCTCAGCTTCTGT+TGG 0.499259 7_3:-67118837 None:intergenic
TTCAGACAGTCCTGATCCAC+GGG 0.502482 7_3:+67120582 Msa1118460:CDS
TCTTCTCACTATTGGTACCT+CGG 0.503620 7_3:+67120699 Msa1118460:CDS
GGACCTCTTTCACTTGCTTG+GGG 0.505016 7_3:+67123647 Msa1118460:CDS
GGTAACGCTGACTCAACAAA+TGG 0.509174 7_3:-67120993 None:intergenic
CAGCCCTAGCAATGTATAAG+TGG 0.509270 7_3:-67123358 None:intergenic
AATCCCCAAGCAAGTGAAAG+AGG 0.516614 7_3:-67123650 None:intergenic
TTAATCAGTAGAGCAACTCT+TGG 0.517207 7_3:+67122282 Msa1118460:CDS
TCAGCGTTACCTCTAGCATA+TGG 0.517644 7_3:+67121005 Msa1118460:CDS
CCACCGTCAAGGCACCCCAC+TGG 0.518725 7_3:-67122779 None:intergenic
TATGGCTATGTGCAGGAGGT+TGG 0.519283 7_3:+67121789 Msa1118460:intron
CTTTGGTTTGCTGCGTAAGG+AGG 0.537726 7_3:+67120621 Msa1118460:CDS
ACGTTGCGGTTCAGAGGGAT+GGG 0.539275 7_3:-67118904 None:intergenic
TCATCAAATCCAGATGTAGC+TGG 0.539401 7_3:+67122207 Msa1118460:CDS
TTAAATGACGTGACAGAAGT+TGG 0.539625 7_3:+67123796 Msa1118460:CDS
GTGATATGGGGAATGAAGAA+AGG 0.540541 7_3:-67121855 None:intergenic
AAAATGTACCCGTTGAGAAG+TGG 0.541828 7_3:-67119268 None:intergenic
TCAAGAATTTCACTAGTACT+GGG 0.542323 7_3:-67120926 None:intergenic
CATAATGTTCGTGTTAACAA+TGG 0.544081 7_3:-67124053 None:intergenic
AACATGGAGACAGACATTTG+TGG 0.544900 7_3:+67123819 Msa1118460:CDS
CACTATTGGTACCTCGGTGG+AGG 0.545144 7_3:+67120705 Msa1118460:CDS
GGAACTCCTTGGACCTGAGA+AGG 0.547475 7_3:+67120345 Msa1118460:CDS
GTGTTACCTGATGAAGATAG+AGG 0.550223 7_3:+67119216 Msa1118460:CDS
GGAGAAATGAAGAAGATGAA+AGG 0.550917 7_3:-67118936 None:intergenic
AAACGACGTTGCGGTTCAGA+GGG 0.551794 7_3:-67118909 None:intergenic
AAAACGACGTTGCGGTTCAG+AGG 0.552456 7_3:-67118910 None:intergenic
ACGACAAAACCAAAACCAAA+CGG 0.553988 7_3:-67118788 None:intergenic
AAAGACGGTGTTGATGATGA+AGG 0.557430 7_3:+67119150 Msa1118460:CDS
CTGGATTTGATGAAAGAAGA+AGG 0.558511 7_3:-67122197 None:intergenic
GAACCTTGAAACAACATGCT+AGG 0.560365 7_3:-67122246 None:intergenic
GACAGTCCTGATCCACGGGG+TGG 0.562814 7_3:+67120586 Msa1118460:CDS
TGATAGCACAGCACCAGCAA+AGG 0.565009 7_3:-67122154 None:intergenic
AGGTAACACTGTGGTTACAT+TGG 0.565740 7_3:-67119202 None:intergenic
TGGATACATGTGAATTGAAA+CGG 0.566171 7_3:-67119068 None:intergenic
GATAGCACAGCACCAGCAAA+GGG 0.567307 7_3:-67122153 None:intergenic
CTTGCAGAGGAACTGGGCAT+AGG 0.570390 7_3:+67123892 Msa1118460:CDS
AATTGAAACGGTGGTTGTAG+TGG 0.573177 7_3:-67119056 None:intergenic
TGACCACTTATACATTGCTA+GGG 0.574206 7_3:+67123355 Msa1118460:CDS
ACAGTCCTGATCCACGGGGT+GGG 0.575752 7_3:+67120587 Msa1118460:CDS
ACTTATACATTGCTAGGGCT+GGG 0.577424 7_3:+67123360 Msa1118460:CDS
TGAAGCACGTTGATTTCGAT+AGG 0.579208 7_3:+67119103 Msa1118460:CDS
AGCCAGAAGAAACAACACTT+TGG 0.580731 7_3:+67120650 Msa1118460:CDS
ACCGGAACTCTGAGTTTAGA+GGG 0.580910 7_3:-67118999 None:intergenic
GAAAATCATTACCAAAGGAA+AGG 0.581591 7_3:+67123996 Msa1118460:three_prime_UTR
TCTGTCACGTCATTTAAGCA+TGG 0.582580 7_3:-67123790 None:intergenic
AATCGGCTAGTTGAGGCCAC+TGG 0.588411 7_3:+67120523 Msa1118460:CDS
AAGACGGTGTTGATGATGAA+GGG 0.591311 7_3:+67119151 Msa1118460:CDS
TACATTGCTAGGGCTGGGAG+TGG 0.592680 7_3:+67123365 Msa1118460:CDS
AAGAATTTCACTAGTACTGG+GGG 0.593824 7_3:-67120924 None:intergenic
CAACCCCTTCCACTTCTCAA+CGG 0.594204 7_3:+67119259 Msa1118460:CDS
ATTCAGACAGTCCTGATCCA+CGG 0.596032 7_3:+67120581 Msa1118460:CDS
ACGTGACAGAAGTTGGAACA+TGG 0.597819 7_3:+67123803 Msa1118460:CDS
CTTGAGTACTTCTATCAGGA+AGG 0.598458 7_3:-67122110 None:intergenic
GATGAGCTTGCAGAGGAACT+GGG 0.604398 7_3:+67123886 Msa1118460:CDS
TCAAGTAGACATATCACTTG+CGG 0.605844 7_3:+67122128 Msa1118460:CDS
ATTGGTACCTCGGTGGAGGT+AGG 0.607753 7_3:+67120709 Msa1118460:CDS
TATAGGAAAATCATTACCAA+AGG 0.607998 7_3:+67123991 Msa1118460:three_prime_UTR
AAATTTAAGGGGAAAGAGAG+AGG 0.608483 7_3:+67120480 Msa1118460:CDS
TACCCGTTGAGAAGTGGAAG+GGG 0.609753 7_3:-67119262 None:intergenic
CAAGAATTTCACTAGTACTG+GGG 0.611013 7_3:-67120925 None:intergenic
GCACAGACCTGCCACCGTCA+AGG 0.611900 7_3:-67122790 None:intergenic
GATCAACCTTCTCAGGTCCA+AGG 0.613468 7_3:-67120351 None:intergenic
ACTCCAAAATCGGCTAGTTG+AGG 0.625387 7_3:+67120516 Msa1118460:CDS
TGTTTGGGATGAGCTTGCAG+AGG 0.630439 7_3:+67123879 Msa1118460:CDS
ACCATCCTGCAATCACGAGA+GGG 0.633883 7_3:-67122596 None:intergenic
CCAGTGGGGTGCCTTGACGG+TGG 0.634620 7_3:+67122779 Msa1118460:CDS
CATGGAGACAGACATTTGTG+GGG 0.635920 7_3:+67123821 Msa1118460:CDS
ACCCTCTCGTGATTGCAGGA+TGG 0.637880 7_3:+67122595 Msa1118460:CDS
GTACCCGTTGAGAAGTGGAA+GGG 0.641962 7_3:-67119263 None:intergenic
AGACGGTGTTGATGATGAAG+GGG 0.643248 7_3:+67119152 Msa1118460:CDS
CCCAAGACGCCATATGCTAG+AGG 0.645133 7_3:-67121014 None:intergenic
TAACCATTAAAACTAAAATG+TGG 0.650160 7_3:-67123923 None:intergenic
TGTACCCGTTGAGAAGTGGA+AGG 0.653433 7_3:-67119264 None:intergenic
CTGAGAAGAGTGTGTCTGTG+TGG 0.656645 7_3:+67118847 Msa1118460:five_prime_UTR
TACCATCCTGCAATCACGAG+AGG 0.665264 7_3:-67122597 None:intergenic
TCTCACTATTGGTACCTCGG+TGG 0.666071 7_3:+67120702 Msa1118460:CDS
AAGGTTGTACTTATCGCCAG+TGG 0.671916 7_3:-67120539 None:intergenic
CTAACACGTGGCCCACCCCG+TGG 0.676500 7_3:-67120598 None:intergenic
ATGGAGACAGACATTTGTGG+GGG 0.683523 7_3:+67123822 Msa1118460:CDS
AGCAAACCAAAGCTAACACG+TGG 0.684408 7_3:-67120610 None:intergenic
ATGGGTTTGACACCATAACA+CGG 0.686241 7_3:-67118886 None:intergenic
ATATAGCATCTCCATATCTG+GGG 0.687528 7_3:-67120970 None:intergenic
AAGCTGCCAAGAGTGATATG+GGG 0.707461 7_3:-67121867 None:intergenic
AAAGGAATAAAACGACGTTG+CGG 0.718101 7_3:-67118918 None:intergenic
GTTGTACACAGATCCAAGTG+AGG 0.722197 7_3:-67120293 None:intergenic
TGCAATTCCTACCTCCACCG+AGG 0.747737 7_3:-67120716 None:intergenic
AGAATTTCACTAGTACTGGG+GGG 0.764374 7_3:-67120923 None:intergenic
ATCTTCATCAGGTAACACTG+TGG 0.768757 7_3:-67119211 None:intergenic
ATACATGTGAATTGAAACGG+TGG 0.789877 7_3:-67119065 None:intergenic
TCAGACAGTCCTGATCCACG+GGG 0.828272 7_3:+67120583 Msa1118460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATCTTTTTAATATTT+AGG - chr7_3:67119876-67119895 None:intergenic 10.0%
!! ATTATTCATTATTCAATATT+AGG + chr7_3:67122697-67122716 Msa1118460:intron 10.0%
!!! ACAATTTTATTTTTATTTAC+AGG + chr7_3:67122723-67122742 Msa1118460:intron 10.0%
!! TATTAAAAAGATTCAATACT+TGG + chr7_3:67119879-67119898 Msa1118460:intron 15.0%
!!! TTTTGTTAACTAACTTTTAA+TGG + chr7_3:67120108-67120127 Msa1118460:intron 15.0%
!! AACAATAAAATATTTAGACA+CGG - chr7_3:67120871-67120890 None:intergenic 15.0%
!! TAATTTCATATGTATAAAAG+TGG - chr7_3:67121558-67121577 None:intergenic 15.0%
!!! CGACTTTATTTTATTAATTT+AGG + chr7_3:67122370-67122389 Msa1118460:intron 15.0%
!!! AGATATATATAGCTTTTTAT+TGG + chr7_3:67123031-67123050 Msa1118460:intron 15.0%
!!! TTTTCAATCAATAACAAAGA+CGG + chr7_3:67119135-67119154 Msa1118460:CDS 20.0%
!!! AATGTTGATTCTTTGATATA+TGG + chr7_3:67119371-67119390 Msa1118460:intron 20.0%
!!! TCATTCTATTTTGGTTTTTA+TGG + chr7_3:67120076-67120095 Msa1118460:intron 20.0%
!!! AAAATTAAGGATAAGCTTTT+TGG + chr7_3:67120388-67120407 Msa1118460:CDS 20.0%
!!! TTTTTGAAATTACAGAAGTT+AGG - chr7_3:67121407-67121426 None:intergenic 20.0%
!!! AAATTAGATTTTACGCTAAA+AGG + chr7_3:67121572-67121591 Msa1118460:intron 20.0%
!! TACATTATATTTATACCTGA+TGG + chr7_3:67121765-67121784 Msa1118460:intron 20.0%
!!! ATGCTTAATTTTACTTGTTT+GGG - chr7_3:67121834-67121853 None:intergenic 20.0%
!!! AATGCTTAATTTTACTTGTT+TGG - chr7_3:67121835-67121854 None:intergenic 20.0%
!! TACTAAAATACATAAACAGA+CGG - chr7_3:67122041-67122060 None:intergenic 20.0%
!!! AAATTATATTCTAGAAAGGA+AGG - chr7_3:67122325-67122344 None:intergenic 20.0%
!!! GGTAAAATTATATTCTAGAA+AGG - chr7_3:67122329-67122348 None:intergenic 20.0%
!! AAAGTACATTATGTTTAAGA+AGG - chr7_3:67122633-67122652 None:intergenic 20.0%
!!! TTTATTTTTATTTACAGGTG+TGG + chr7_3:67122728-67122747 Msa1118460:intron 20.0%
!!! TTATTTTTATTTACAGGTGT+GGG + chr7_3:67122729-67122748 Msa1118460:intron 20.0%
!!! TAATTTTGACTGTATGAAAT+GGG + chr7_3:67123007-67123026 Msa1118460:intron 20.0%
!! GCATTTAGTATTTACTAATA+TGG + chr7_3:67123126-67123145 Msa1118460:intron 20.0%
!! CATGTAATGAAACAAAAATT+AGG - chr7_3:67123289-67123308 None:intergenic 20.0%
!!! TAACCACATTTTAGTTTTAA+TGG + chr7_3:67123920-67123939 Msa1118460:exon 20.0%
!! TAACCATTAAAACTAAAATG+TGG - chr7_3:67123926-67123945 None:intergenic 20.0%
!! TGTAAAGAAAAAGAATACTA+TGG + chr7_3:67124077-67124096 Msa1118460:three_prime_UTR 20.0%
!! GTAAAGAAAAAGAATACTAT+GGG + chr7_3:67124078-67124097 Msa1118460:three_prime_UTR 20.0%
! ATTTCTCCATTGAAGAAAAA+TGG + chr7_3:67118951-67118970 Msa1118460:exon 25.0%
! TTTCTCCATTGAAGAAAAAT+GGG + chr7_3:67118952-67118971 Msa1118460:exon 25.0%
!! GTTTGTGAAATTTTGTATTG+CGG - chr7_3:67119757-67119776 None:intergenic 25.0%
!! TGTTGTCTATCATTCTATTT+TGG + chr7_3:67120067-67120086 Msa1118460:intron 25.0%
!! TTAATTTTCTTTACATCAGC+AGG - chr7_3:67120376-67120395 None:intergenic 25.0%
! TGCTGATGTAAAGAAAATTA+AGG + chr7_3:67120375-67120394 Msa1118460:CDS 25.0%
!!! TTTTTGGTTATTCAACCTTT+TGG + chr7_3:67120404-67120423 Msa1118460:CDS 25.0%
!!! TTTTGGTTATTCAACCTTTT+GGG + chr7_3:67120405-67120424 Msa1118460:CDS 25.0%
!! TTCTTTTCATCGGAAATTTA+AGG + chr7_3:67120467-67120486 Msa1118460:CDS 25.0%
!! TCTTTTCATCGGAAATTTAA+GGG + chr7_3:67120468-67120487 Msa1118460:CDS 25.0%
!!! TTTTTTCCATACTCCAAAAT+CGG + chr7_3:67120506-67120525 Msa1118460:CDS 25.0%
! ATCAATACTATTTGAACATC+AGG + chr7_3:67120756-67120775 Msa1118460:intron 25.0%
!!! AAACTTAACTGTTTTAAGCT+GGG - chr7_3:67121257-67121276 None:intergenic 25.0%
! TGAGACATTGTATAATAGTA+TGG - chr7_3:67121432-67121451 None:intergenic 25.0%
! CTATTATACAATGTCTCATT+AGG + chr7_3:67121434-67121453 Msa1118460:intron 25.0%
! GAAAACTACACAAATAAGAT+AGG - chr7_3:67121680-67121699 None:intergenic 25.0%
!! ATATTTATACCTGATGGATA+TGG + chr7_3:67121771-67121790 Msa1118460:intron 25.0%
!!! GTATTTTAGTATGCATCTAA+AGG + chr7_3:67122050-67122069 Msa1118460:intron 25.0%
! ATTTAGGTAAAATACTCTAG+TGG + chr7_3:67122386-67122405 Msa1118460:intron 25.0%
!! AGTATGCATACTTTATGTTT+TGG + chr7_3:67122505-67122524 Msa1118460:intron 25.0%
! ATATTTACTTGTCATACAGA+AGG + chr7_3:67122842-67122861 Msa1118460:intron 25.0%
! GATTGTCCTATTTCAAATTT+CGG + chr7_3:67122884-67122903 Msa1118460:intron 25.0%
! CCAATTTAATAGTAACCAAT+TGG - chr7_3:67122911-67122930 None:intergenic 25.0%
! CCAATTGGTTACTATTAAAT+TGG + chr7_3:67122908-67122927 Msa1118460:intron 25.0%
!!! CTAATTTTGACTGTATGAAA+TGG + chr7_3:67123006-67123025 Msa1118460:intron 25.0%
!! TGCTTTGAATTTCACAATTA+AGG - chr7_3:67123081-67123100 None:intergenic 25.0%
! GATAAGTAGAAACAATTGAT+CGG + chr7_3:67123170-67123189 Msa1118460:intron 25.0%
! CATGAATGAGAATATTTATG+TGG - chr7_3:67123211-67123230 None:intergenic 25.0%
! AAATATTCTCATTCATGAGT+TGG + chr7_3:67123214-67123233 Msa1118460:intron 25.0%
! GGTAAGTCTAATATTTGTTT+AGG + chr7_3:67123386-67123405 Msa1118460:intron 25.0%
!!! ATTTTTTGTCATATTTTCGC+AGG + chr7_3:67123670-67123689 Msa1118460:CDS 25.0%
! TTCACTGCTCATTATAAATA+TGG - chr7_3:67123963-67123982 None:intergenic 25.0%
! AGCAGTGAAATGAAATATAT+AGG + chr7_3:67123974-67123993 Msa1118460:three_prime_UTR 25.0%
! TATAGGAAAATCATTACCAA+AGG + chr7_3:67123991-67124010 Msa1118460:three_prime_UTR 25.0%
! AATTGAATTAACCTTTCCTT+TGG - chr7_3:67124010-67124029 None:intergenic 25.0%
! CTACAACCTTTCTAAATAAA+TGG - chr7_3:67124104-67124123 None:intergenic 25.0%
!! AAGTTCCCATTTTTCTTCAA+TGG - chr7_3:67118960-67118979 None:intergenic 30.0%
TGGATACATGTGAATTGAAA+CGG - chr7_3:67119071-67119090 None:intergenic 30.0%
TCAATTCACATGTATCCAAA+TGG + chr7_3:67119073-67119092 Msa1118460:CDS 30.0%
CAATTCACATGTATCCAAAT+GGG + chr7_3:67119074-67119093 Msa1118460:CDS 30.0%
CTTTGATATATGGCTCTTAT+TGG + chr7_3:67119381-67119400 Msa1118460:intron 30.0%
TAAGCTTTCTATGACTGTTT+GGG - chr7_3:67119581-67119600 None:intergenic 30.0%
ATAAGCTTTCTATGACTGTT+TGG - chr7_3:67119582-67119601 None:intergenic 30.0%
TATAGTATACACGTTTGGAT+TGG - chr7_3:67119631-67119650 None:intergenic 30.0%
CTAACTATAGTATACACGTT+TGG - chr7_3:67119636-67119655 None:intergenic 30.0%
! CAAAACACTTGCATAGTTTT+TGG - chr7_3:67119983-67120002 None:intergenic 30.0%
!!! TGGGTTTTTTTTAACACATG+AGG - chr7_3:67120177-67120196 None:intergenic 30.0%
! AGTTGATTCTTTCAAACTCA+TGG + chr7_3:67120324-67120343 Msa1118460:CDS 30.0%
! CTTTTCATCGGAAATTTAAG+GGG + chr7_3:67120469-67120488 Msa1118460:CDS 30.0%
! CGATAAGTACAACCTTTTTA+TGG + chr7_3:67120546-67120565 Msa1118460:CDS 30.0%
GATCTGATGAATCAAAAACA+TGG - chr7_3:67120895-67120914 None:intergenic 30.0%
TCAAGAATTTCACTAGTACT+GGG - chr7_3:67120929-67120948 None:intergenic 30.0%
TTTCCTGTATCACAAAAAAC+TGG + chr7_3:67121129-67121148 Msa1118460:intron 30.0%
! TTTTAAGCTGGGTAAAAAGT+AGG - chr7_3:67121246-67121265 None:intergenic 30.0%
!! CAAACTTAACTGTTTTAAGC+TGG - chr7_3:67121258-67121277 None:intergenic 30.0%
GAAGTTAGGTAAAAGAGATA+AGG - chr7_3:67121393-67121412 None:intergenic 30.0%
CAACATAGTGACATGAATAT+CGG - chr7_3:67121470-67121489 None:intergenic 30.0%
GTCAAAAGTTTCAGTTAGTT+TGG + chr7_3:67121521-67121540 Msa1118460:intron 30.0%
!!! CAGTTTTTTACACAATTCCA+TGG + chr7_3:67121704-67121723 Msa1118460:intron 30.0%
GAAGCAAAAAGAAAAGTTGA+TGG - chr7_3:67121732-67121751 None:intergenic 30.0%
! ATATTCTAGAAAGGAAGGAA+GGG - chr7_3:67122320-67122339 None:intergenic 30.0%
! TATATTCTAGAAAGGAAGGA+AGG - chr7_3:67122321-67122340 None:intergenic 30.0%
AAGCATGTTAAAAGCTTGTA+TGG - chr7_3:67122759-67122778 None:intergenic 30.0%
! ATTGGTCCGAAATTTGAAAT+AGG - chr7_3:67122893-67122912 None:intergenic 30.0%
ATTTCAAATTTCGGACCAAT+TGG + chr7_3:67122893-67122912 Msa1118460:intron 30.0%
TTTCATTACATGTTCTTGCA+GGG + chr7_3:67123297-67123316 Msa1118460:intron 30.0%
AGTTTAACCATAGCATGAAT+TGG + chr7_3:67123455-67123474 Msa1118460:intron 30.0%
! TGTAACTATTACCAGTCTTT+TGG + chr7_3:67123513-67123532 Msa1118460:intron 30.0%
CTGAAAAATAACCAAAAGAC+TGG - chr7_3:67123527-67123546 None:intergenic 30.0%
AAGCTGTTGAAAAGAGAAAA+GGG - chr7_3:67123624-67123643 None:intergenic 30.0%
GAAAATCATTACCAAAGGAA+AGG + chr7_3:67123996-67124015 Msa1118460:three_prime_UTR 30.0%
!!! AACAATGGTTTTATCACAAG+CGG - chr7_3:67124041-67124060 None:intergenic 30.0%
CATAATGTTCGTGTTAACAA+TGG - chr7_3:67124056-67124075 None:intergenic 30.0%
TATGGGCCATTTATTTAGAA+AGG + chr7_3:67124095-67124114 Msa1118460:three_prime_UTR 30.0%
ACGACAAAACCAAAACCAAA+CGG - chr7_3:67118791-67118810 None:intergenic 35.0%
!!! GGTTTTGGTTTTGTCGTATT+TGG + chr7_3:67118794-67118813 Msa1118460:five_prime_UTR 35.0%
AAAGGAATAAAACGACGTTG+CGG - chr7_3:67118921-67118940 None:intergenic 35.0%
GGAGAAATGAAGAAGATGAA+AGG - chr7_3:67118939-67118958 None:intergenic 35.0%
ATACATGTGAATTGAAACGG+TGG - chr7_3:67119068-67119087 None:intergenic 35.0%
TTAAAGCCTCTATCTTCATC+AGG - chr7_3:67119225-67119244 None:intergenic 35.0%
! TCTTGTGTTCTTTTCTTGCT+TGG + chr7_3:67119308-67119327 Msa1118460:intron 35.0%
CTATAGTTAGAAACTGCTAC+AGG + chr7_3:67119646-67119665 Msa1118460:intron 35.0%
TTAGTCTACCTAGTGTTTAG+TGG + chr7_3:67119694-67119713 Msa1118460:intron 35.0%
CATAGCAATTGTAGTGTAGT+GGG + chr7_3:67119794-67119813 Msa1118460:intron 35.0%
AGAGAGAAATCCTCTTTGTT+TGG + chr7_3:67119840-67119859 Msa1118460:intron 35.0%
CCAAATATCACCAAACAAAG+AGG - chr7_3:67119853-67119872 None:intergenic 35.0%
! CCTCTTTGTTTGGTGATATT+TGG + chr7_3:67119850-67119869 Msa1118460:intron 35.0%
!!! AGTTTTTGGTTGGGAACAAA+TGG - chr7_3:67119969-67119988 None:intergenic 35.0%
!!! CACTTGCATAGTTTTTGGTT+GGG - chr7_3:67119978-67119997 None:intergenic 35.0%
!!! ACACTTGCATAGTTTTTGGT+TGG - chr7_3:67119979-67119998 None:intergenic 35.0%
CAACAGAAACATTGATCTGT+GGG - chr7_3:67120196-67120215 None:intergenic 35.0%
AAATTTAAGGGGAAAGAGAG+AGG + chr7_3:67120480-67120499 Msa1118460:CDS 35.0%
! GTACAACCTTTTTATGGTAG+AGG + chr7_3:67120552-67120571 Msa1118460:CDS 35.0%
!! CTGTTGTTTCTTCTCACTAT+TGG + chr7_3:67120691-67120710 Msa1118460:CDS 35.0%
! AAGAATTTCACTAGTACTGG+GGG - chr7_3:67120927-67120946 None:intergenic 35.0%
CAAGAATTTCACTAGTACTG+GGG - chr7_3:67120928-67120947 None:intergenic 35.0%
GTCAAGAATTTCACTAGTAC+TGG - chr7_3:67120930-67120949 None:intergenic 35.0%
ATATAGCATCTCCATATCTG+GGG - chr7_3:67120973-67120992 None:intergenic 35.0%
GATATAGCATCTCCATATCT+GGG - chr7_3:67120974-67120993 None:intergenic 35.0%
CAAACGCACACAAAAAAGAA+CGG - chr7_3:67121073-67121092 None:intergenic 35.0%
!!! CATCCAGTTTTTTGTGATAC+AGG - chr7_3:67121135-67121154 None:intergenic 35.0%
CAAAACATAGTCTATGACTC+CGG + chr7_3:67121161-67121180 Msa1118460:intron 35.0%
GTGCAGTAAAATCTAAACAC+CGG - chr7_3:67121183-67121202 None:intergenic 35.0%
AGGTAAAAGAGATAAGGAAG+AGG - chr7_3:67121387-67121406 None:intergenic 35.0%
! TATGTTGATCGACTCACTAT+TGG + chr7_3:67121483-67121502 Msa1118460:intron 35.0%
!! AAGAAAAGTTGATGGAACCA+TGG - chr7_3:67121724-67121743 None:intergenic 35.0%
TTACTGCTGATGGTTCAATT+TGG - chr7_3:67122011-67122030 None:intergenic 35.0%
TCTACTTGAGTACTTCTATC+AGG - chr7_3:67122117-67122136 None:intergenic 35.0%
TCAAGTAGACATATCACTTG+CGG + chr7_3:67122128-67122147 Msa1118460:CDS 35.0%
!!! TCATTTTCGATGTTTGCTGT+TGG + chr7_3:67122174-67122193 Msa1118460:CDS 35.0%
CTGGATTTGATGAAAGAAGA+AGG - chr7_3:67122200-67122219 None:intergenic 35.0%
TTTCAAGGTTCTTTGCTACT+TGG + chr7_3:67122258-67122277 Msa1118460:CDS 35.0%
TTAATCAGTAGAGCAACTCT+TGG + chr7_3:67122282-67122301 Msa1118460:CDS 35.0%
!! CAAGCACTGGATCTATATTT+AGG - chr7_3:67122350-67122369 None:intergenic 35.0%
TAAAATAAAGTCGCAAGCAC+TGG - chr7_3:67122363-67122382 None:intergenic 35.0%
TGCAATCATGTCATATCACT+TGG - chr7_3:67122450-67122469 None:intergenic 35.0%
TGTTAAGAACCACAGATTTG+GGG - chr7_3:67122671-67122690 None:intergenic 35.0%
GTGTTAAGAACCACAGATTT+GGG - chr7_3:67122672-67122691 None:intergenic 35.0%
TGTGTTAAGAACCACAGATT+TGG - chr7_3:67122673-67122692 None:intergenic 35.0%
AGTAGAAACAATTGATCGGT+AGG + chr7_3:67123174-67123193 Msa1118460:intron 35.0%
GTTTCATTACATGTTCTTGC+AGG + chr7_3:67123296-67123315 Msa1118460:intron 35.0%
!! TTTTGGAAAAGGTGCACTAA+TGG + chr7_3:67123323-67123342 Msa1118460:CDS 35.0%
TTGACCACTTATACATTGCT+AGG + chr7_3:67123354-67123373 Msa1118460:CDS 35.0%
TGACCACTTATACATTGCTA+GGG + chr7_3:67123355-67123374 Msa1118460:CDS 35.0%
AGCTGTTGAAAAGAGAAAAG+GGG - chr7_3:67123623-67123642 None:intergenic 35.0%
CAAGCTGTTGAAAAGAGAAA+AGG - chr7_3:67123625-67123644 None:intergenic 35.0%
! CTTTTCTCTTTTCAACAGCT+TGG + chr7_3:67123623-67123642 Msa1118460:intron 35.0%
TCATTTAAGCATGGTTTCTC+CGG - chr7_3:67123784-67123803 None:intergenic 35.0%
TTAAATGACGTGACAGAAGT+TGG + chr7_3:67123796-67123815 Msa1118460:CDS 35.0%
! TCAGCTTCTGTTGGTTGTTT+GGG - chr7_3:67118831-67118850 None:intergenic 40.0%
TTGACACCATAACACGGAAA+TGG - chr7_3:67118883-67118902 None:intergenic 40.0%
ATGGGTTTGACACCATAACA+CGG - chr7_3:67118889-67118908 None:intergenic 40.0%
!!! GTAGTGGATTTTGTTCCTGA+AGG - chr7_3:67119043-67119062 None:intergenic 40.0%
AATTGAAACGGTGGTTGTAG+TGG - chr7_3:67119059-67119078 None:intergenic 40.0%
!! TGAAGCACGTTGATTTCGAT+AGG + chr7_3:67119103-67119122 Msa1118460:CDS 40.0%
!! AAAGACGGTGTTGATGATGA+AGG + chr7_3:67119150-67119169 Msa1118460:CDS 40.0%
!! AAGACGGTGTTGATGATGAA+GGG + chr7_3:67119151-67119170 Msa1118460:CDS 40.0%
!! GTTGATGATGAAGGGGAAAA+TGG + chr7_3:67119159-67119178 Msa1118460:CDS 40.0%
AGGTAACACTGTGGTTACAT+TGG - chr7_3:67119205-67119224 None:intergenic 40.0%
ATCTTCATCAGGTAACACTG+TGG - chr7_3:67119214-67119233 None:intergenic 40.0%
GTGTTACCTGATGAAGATAG+AGG + chr7_3:67119216-67119235 Msa1118460:CDS 40.0%
AAAATGTACCCGTTGAGAAG+TGG - chr7_3:67119271-67119290 None:intergenic 40.0%
! TGTGTTCTTTTCTTGCTTGG+TGG + chr7_3:67119311-67119330 Msa1118460:intron 40.0%
CACTTAAGCCACTAAACACT+AGG - chr7_3:67119705-67119724 None:intergenic 40.0%
GTTTAGTGGCTTAAGTGTAG+CGG + chr7_3:67119708-67119727 Msa1118460:intron 40.0%
CCACTACACTACAATTGCTA+TGG - chr7_3:67119796-67119815 None:intergenic 40.0%
CCATAGCAATTGTAGTGTAG+TGG + chr7_3:67119793-67119812 Msa1118460:intron 40.0%
GGGAGAGATTTGAATGAAGA+AGG + chr7_3:67119814-67119833 Msa1118460:intron 40.0%
CTCCTTCTTCAAGAAACTTG+TGG - chr7_3:67119905-67119924 None:intergenic 40.0%
CACAAGTTTCTTGAAGAAGG+AGG + chr7_3:67119903-67119922 Msa1118460:intron 40.0%
TTGGGAACAAATGGAGAAGA+GGG - chr7_3:67119960-67119979 None:intergenic 40.0%
TAAGCTTCTTCGTGGTAGAA+GGG - chr7_3:67120029-67120048 None:intergenic 40.0%
ATATCTGCTAAGCTTCTTCG+TGG - chr7_3:67120037-67120056 None:intergenic 40.0%
ATTAGAAGTTGTCCATCCGT+GGG - chr7_3:67120151-67120170 None:intergenic 40.0%
GCAACAGAAACATTGATCTG+TGG - chr7_3:67120197-67120216 None:intergenic 40.0%
TTCAAACTCATGGAACTCCT+TGG + chr7_3:67120334-67120353 Msa1118460:CDS 40.0%
!!! AACTAGCCGATTTTGGAGTA+TGG - chr7_3:67120515-67120534 None:intergenic 40.0%
CAGGTTCCTCTACCATAAAA+AGG - chr7_3:67120561-67120580 None:intergenic 40.0%
!! AAGTGTTGTTTCTTCTGGCT+CGG - chr7_3:67120650-67120669 None:intergenic 40.0%
AGCCAGAAGAAACAACACTT+TGG + chr7_3:67120650-67120669 Msa1118460:CDS 40.0%
!! TGCCAAAGTGTTGTTTCTTC+TGG - chr7_3:67120655-67120674 None:intergenic 40.0%
TCTTCTCACTATTGGTACCT+CGG + chr7_3:67120699-67120718 Msa1118460:CDS 40.0%
GAATTGCATCTCAGGTATGT+TGG + chr7_3:67120731-67120750 Msa1118460:intron 40.0%
TTAGACACGGCAGAAGAAAA+CGG - chr7_3:67120858-67120877 None:intergenic 40.0%
! AGAATTTCACTAGTACTGGG+GGG - chr7_3:67120926-67120945 None:intergenic 40.0%
GGATATAGCATCTCCATATC+TGG - chr7_3:67120975-67120994 None:intergenic 40.0%
TAAGGAAGAGGATAGAGACT+CGG - chr7_3:67121375-67121394 None:intergenic 40.0%
AATCTGCAATCCAGCACATA+TGG - chr7_3:67121619-67121638 None:intergenic 40.0%
GTGATATGGGGAATGAAGAA+AGG - chr7_3:67121858-67121877 None:intergenic 40.0%
TTCATTCCCCATATCACTCT+TGG + chr7_3:67121861-67121880 Msa1118460:CDS 40.0%
AAAGCTGCCAAGAGTGATAT+GGG - chr7_3:67121871-67121890 None:intergenic 40.0%
AGACTCAATGCAAAAGTGAC+TGG - chr7_3:67121932-67121951 None:intergenic 40.0%
CGGTTAAAAGTTACTGCTGA+TGG - chr7_3:67122021-67122040 None:intergenic 40.0%
CTTGAGTACTTCTATCAGGA+AGG - chr7_3:67122113-67122132 None:intergenic 40.0%
CAAGTAGACATATCACTTGC+GGG + chr7_3:67122129-67122148 Msa1118460:CDS 40.0%
TCATCAAATCCAGATGTAGC+TGG + chr7_3:67122207-67122226 Msa1118460:CDS 40.0%
!! GTTCCTAGCATGTTGTTTCA+AGG + chr7_3:67122243-67122262 Msa1118460:CDS 40.0%
GAACCTTGAAACAACATGCT+AGG - chr7_3:67122249-67122268 None:intergenic 40.0%
! TCTAGTGGATCATTATGCGT+GGG + chr7_3:67122401-67122420 Msa1118460:intron 40.0%
CATATCACTTGGAAACAGCT+TGG - chr7_3:67122439-67122458 None:intergenic 40.0%
ATGATTGCAGCACATCAGTT+TGG + chr7_3:67122461-67122480 Msa1118460:intron 40.0%
TGATTGCAGCACATCAGTTT+GGG + chr7_3:67122462-67122481 Msa1118460:intron 40.0%
CAGTGTGTCAAAGTTAACTG+CGG - chr7_3:67122531-67122550 None:intergenic 40.0%
CAAATCAATCCCCAAATCTG+TGG + chr7_3:67122659-67122678 Msa1118460:intron 40.0%
! AAAGGTGCACTAATGGTCTT+TGG + chr7_3:67123330-67123349 Msa1118460:CDS 40.0%
ACTTATACATTGCTAGGGCT+GGG + chr7_3:67123360-67123379 Msa1118460:CDS 40.0%
GCTCTAACCAATTCATGCTA+TGG - chr7_3:67123465-67123484 None:intergenic 40.0%
! TTCTCTTTTCAACAGCTTGG+TGG + chr7_3:67123626-67123645 Msa1118460:intron 40.0%
! GATGTTTTGTCAGAGATCAC+CGG + chr7_3:67123762-67123781 Msa1118460:intron 40.0%
TCTGTCACGTCATTTAAGCA+TGG - chr7_3:67123793-67123812 None:intergenic 40.0%
AACATGGAGACAGACATTTG+TGG + chr7_3:67123819-67123838 Msa1118460:CDS 40.0%
ACATGGAGACAGACATTTGT+GGG + chr7_3:67123820-67123839 Msa1118460:CDS 40.0%
TCTTGACTCTTCTTCCTGTT+TGG + chr7_3:67123863-67123882 Msa1118460:CDS 40.0%
CTTGACTCTTCTTCCTGTTT+GGG + chr7_3:67123864-67123883 Msa1118460:CDS 40.0%
! CTCAGCTTCTGTTGGTTGTT+TGG - chr7_3:67118832-67118851 None:intergenic 45.0%
ACACTCTTCTCAGCTTCTGT+TGG - chr7_3:67118840-67118859 None:intergenic 45.0%
CGTGTTCCATTTCCGTGTTA+TGG + chr7_3:67118874-67118893 Msa1118460:five_prime_UTR 45.0%
TCCCTCTAAACTCAGAGTTC+CGG + chr7_3:67118998-67119017 Msa1118460:CDS 45.0%
ACCGGAACTCTGAGTTTAGA+GGG - chr7_3:67119002-67119021 None:intergenic 45.0%
AACCGGAACTCTGAGTTTAG+AGG - chr7_3:67119003-67119022 None:intergenic 45.0%
!! AACAGTGAACCGGTTTGAAC+CGG - chr7_3:67119020-67119039 None:intergenic 45.0%
TTCCTGAAGGAACAGTGAAC+CGG - chr7_3:67119030-67119049 None:intergenic 45.0%
GTGCTTCAACTTTGCCCATT+TGG - chr7_3:67119091-67119110 None:intergenic 45.0%
!! AGACGGTGTTGATGATGAAG+GGG + chr7_3:67119152-67119171 Msa1118460:CDS 45.0%
GTTAGAAACTGCTACAGGCT+TGG + chr7_3:67119651-67119670 Msa1118460:intron 45.0%
CACAAACTGTCGTCGAATAG+AGG + chr7_3:67119770-67119789 Msa1118460:intron 45.0%
GGCCACAAGTTTCTTGAAGA+AGG + chr7_3:67119900-67119919 Msa1118460:intron 45.0%
TGGGAACAAATGGAGAAGAG+GGG - chr7_3:67119959-67119978 None:intergenic 45.0%
GTTGGGAACAAATGGAGAAG+AGG - chr7_3:67119961-67119980 None:intergenic 45.0%
CTAAGCTTCTTCGTGGTAGA+AGG - chr7_3:67120030-67120049 None:intergenic 45.0%
CATTAGAAGTTGTCCATCCG+TGG - chr7_3:67120152-67120171 None:intergenic 45.0%
CAGTCATCTTTGTCCTCACT+TGG + chr7_3:67120280-67120299 Msa1118460:intron 45.0%
GTTGTACACAGATCCAAGTG+AGG - chr7_3:67120296-67120315 None:intergenic 45.0%
!! AACCTTTTGGGTGACCAAAG+AGG + chr7_3:67120417-67120436 Msa1118460:CDS 45.0%
!!! GGAGAAGGCGTTCTTTTCAT+CGG + chr7_3:67120457-67120476 Msa1118460:CDS 45.0%
! ACTCCAAAATCGGCTAGTTG+AGG + chr7_3:67120516-67120535 Msa1118460:CDS 45.0%
AAGGTTGTACTTATCGCCAG+TGG - chr7_3:67120542-67120561 None:intergenic 45.0%
ATTCAGACAGTCCTGATCCA+CGG + chr7_3:67120581-67120600 Msa1118460:CDS 45.0%
AGCAAACCAAAGCTAACACG+TGG - chr7_3:67120613-67120632 None:intergenic 45.0%
!! TAGCTTTGGTTTGCTGCGTA+AGG + chr7_3:67120618-67120637 Msa1118460:CDS 45.0%
! TCTGGGGCTTCAGTATAGTT+AGG - chr7_3:67120957-67120976 None:intergenic 45.0%
CTATACTGAAGCCCCAGATA+TGG + chr7_3:67120959-67120978 Msa1118460:CDS 45.0%
!! GGTAACGCTGACTCAACAAA+TGG - chr7_3:67120996-67121015 None:intergenic 45.0%
TCAGCGTTACCTCTAGCATA+TGG + chr7_3:67121005-67121024 Msa1118460:CDS 45.0%
GAAATACCTGCCATATGTGC+TGG + chr7_3:67121606-67121625 Msa1118460:intron 45.0%
TGCACATAGCCATATCCATC+AGG - chr7_3:67121783-67121802 None:intergenic 45.0%
! TGATGGATATGGCTATGTGC+AGG + chr7_3:67121782-67121801 Msa1118460:intron 45.0%
AAGCTGCCAAGAGTGATATG+GGG - chr7_3:67121870-67121889 None:intergenic 45.0%
CAAAGCTGCCAAGAGTGATA+TGG - chr7_3:67121872-67121891 None:intergenic 45.0%
CATATCACTCTTGGCAGCTT+TGG + chr7_3:67121870-67121889 Msa1118460:CDS 45.0%
!! CAGCTTTGGTGCTATTACTC+AGG + chr7_3:67121884-67121903 Msa1118460:CDS 45.0%
TCAATGCAAAAGTGACTGGC+TGG - chr7_3:67121928-67121947 None:intergenic 45.0%
TGCATCTAAAGGCTGATCCA+TGG + chr7_3:67122061-67122080 Msa1118460:intron 45.0%
AACTACACAACACACAGCCA+TGG - chr7_3:67122081-67122100 None:intergenic 45.0%
TCCAGATGTAGCTGGAGATT+TGG + chr7_3:67122215-67122234 Msa1118460:CDS 45.0%
ACCAAATCTCCAGCTACATC+TGG - chr7_3:67122219-67122238 None:intergenic 45.0%
! CTCTAGTGGATCATTATGCG+TGG + chr7_3:67122400-67122419 Msa1118460:intron 45.0%
CTGCTATTGTATGTGCAGAG+CGG + chr7_3:67122548-67122567 Msa1118460:intron 45.0%
!! ATGTTCTTGCAGGGTGCTTT+TGG + chr7_3:67123306-67123325 Msa1118460:intron 45.0%
!! TTGCAGGGTGCTTTTGGAAA+AGG + chr7_3:67123312-67123331 Msa1118460:intron 45.0%
CAGCCCTAGCAATGTATAAG+TGG - chr7_3:67123361-67123380 None:intergenic 45.0%
CACTTATACATTGCTAGGGC+TGG + chr7_3:67123359-67123378 Msa1118460:CDS 45.0%
CTCTCCTCATGTAATGGTCA+CGG - chr7_3:67123487-67123506 None:intergenic 45.0%
GTGACCATTACATGAGGAGA+GGG + chr7_3:67123486-67123505 Msa1118460:intron 45.0%
TGGACCTCTTTCACTTGCTT+GGG + chr7_3:67123646-67123665 Msa1118460:CDS 45.0%
AATCCCCAAGCAAGTGAAAG+AGG - chr7_3:67123653-67123672 None:intergenic 45.0%
ACGTGACAGAAGTTGGAACA+TGG + chr7_3:67123803-67123822 Msa1118460:CDS 45.0%
CATGGAGACAGACATTTGTG+GGG + chr7_3:67123821-67123840 Msa1118460:CDS 45.0%
ATGGAGACAGACATTTGTGG+GGG + chr7_3:67123822-67123841 Msa1118460:CDS 45.0%
! CTGAGAAGAGTGTGTCTGTG+TGG + chr7_3:67118847-67118866 Msa1118460:five_prime_UTR 50.0%
AAACGACGTTGCGGTTCAGA+GGG - chr7_3:67118912-67118931 None:intergenic 50.0%
AAAACGACGTTGCGGTTCAG+AGG - chr7_3:67118913-67118932 None:intergenic 50.0%
CTCAGAGTTCCGGTTCAAAC+CGG + chr7_3:67119008-67119027 Msa1118460:CDS 50.0%
! AACCGGTTCACTGTTCCTTC+AGG + chr7_3:67119025-67119044 Msa1118460:CDS 50.0%
CAACCCCTTCCACTTCTCAA+CGG + chr7_3:67119259-67119278 Msa1118460:CDS 50.0%
AACCCCTTCCACTTCTCAAC+GGG + chr7_3:67119260-67119279 Msa1118460:CDS 50.0%
TACCCGTTGAGAAGTGGAAG+GGG - chr7_3:67119265-67119284 None:intergenic 50.0%
GTACCCGTTGAGAAGTGGAA+GGG - chr7_3:67119266-67119285 None:intergenic 50.0%
TGTACCCGTTGAGAAGTGGA+AGG - chr7_3:67119267-67119286 None:intergenic 50.0%
GGGAACAAATGGAGAAGAGG+GGG - chr7_3:67119958-67119977 None:intergenic 50.0%
GCACATGTGCTTGAAACCCA+CGG + chr7_3:67120132-67120151 Msa1118460:intron 50.0%
ATGTGCTTGAAACCCACGGA+TGG + chr7_3:67120136-67120155 Msa1118460:intron 50.0%
GATCAACCTTCTCAGGTCCA+AGG - chr7_3:67120354-67120373 None:intergenic 50.0%
TCAGCAGGATCAACCTTCTC+AGG - chr7_3:67120361-67120380 None:intergenic 50.0%
CTCCTCTTTGGTCACCCAAA+AGG - chr7_3:67120422-67120441 None:intergenic 50.0%
! GTGACCAAAGAGGAGCCTTT+TGG + chr7_3:67120427-67120446 Msa1118460:CDS 50.0%
TTCGCCAAAAGGCTCCTCTT+TGG - chr7_3:67120434-67120453 None:intergenic 50.0%
!! TGGCCTCAACTAGCCGATTT+TGG - chr7_3:67120522-67120541 None:intergenic 50.0%
GGATCAGGACTGTCTGAATC+AGG - chr7_3:67120580-67120599 None:intergenic 50.0%
TTCAGACAGTCCTGATCCAC+GGG + chr7_3:67120582-67120601 Msa1118460:CDS 50.0%
!! CTTTGGTTTGCTGCGTAAGG+AGG + chr7_3:67120621-67120640 Msa1118460:CDS 50.0%
TCTCACTATTGGTACCTCGG+TGG + chr7_3:67120702-67120721 Msa1118460:CDS 50.0%
GGAGGTAGGAATTGCATCTC+AGG + chr7_3:67120723-67120742 Msa1118460:CDS 50.0%
CACGGCAGAAGAAAACGGTA+AGG - chr7_3:67120853-67120872 None:intergenic 50.0%
ACCTCTAGCATATGGCGTCT+TGG + chr7_3:67121013-67121032 Msa1118460:CDS 50.0%
CCTCTAGCATATGGCGTCTT+GGG + chr7_3:67121014-67121033 Msa1118460:CDS 50.0%
ACTGTGTAGTGCTGTGACGA+CGG + chr7_3:67121300-67121319 Msa1118460:intron 50.0%
TGCAATCCAGCACATATGGC+AGG - chr7_3:67121615-67121634 None:intergenic 50.0%
TGGATATGGCTATGTGCAGG+AGG + chr7_3:67121785-67121804 Msa1118460:intron 50.0%
TATGGCTATGTGCAGGAGGT+TGG + chr7_3:67121789-67121808 Msa1118460:intron 50.0%
GATAGCACAGCACCAGCAAA+GGG - chr7_3:67122156-67122175 None:intergenic 50.0%
TGATAGCACAGCACCAGCAA+AGG - chr7_3:67122157-67122176 None:intergenic 50.0%
GCAATCACGAGAGGGTGAAT+TGG - chr7_3:67122591-67122610 None:intergenic 50.0%
ATTCACCCTCTCGTGATTGC+AGG + chr7_3:67122591-67122610 Msa1118460:CDS 50.0%
ACCATCCTGCAATCACGAGA+GGG - chr7_3:67122599-67122618 None:intergenic 50.0%
TACCATCCTGCAATCACGAG+AGG - chr7_3:67122600-67122619 None:intergenic 50.0%
AGAGCCGTGACCATTACATG+AGG + chr7_3:67123480-67123499 Msa1118460:intron 50.0%
CGTGACCATTACATGAGGAG+AGG + chr7_3:67123485-67123504 Msa1118460:intron 50.0%
TGAGCCCTCTCCTCATGTAA+TGG - chr7_3:67123493-67123512 None:intergenic 50.0%
GTGGACCTCTTTCACTTGCT+TGG + chr7_3:67123645-67123664 Msa1118460:CDS 50.0%
GGACCTCTTTCACTTGCTTG+GGG + chr7_3:67123647-67123666 Msa1118460:CDS 50.0%
TCTGCAAGCTCATCCCAAAC+AGG - chr7_3:67123880-67123899 None:intergenic 50.0%
! TGTTTGGGATGAGCTTGCAG+AGG + chr7_3:67123879-67123898 Msa1118460:CDS 50.0%
GATGAGCTTGCAGAGGAACT+GGG + chr7_3:67123886-67123905 Msa1118460:CDS 50.0%
ACGTTGCGGTTCAGAGGGAT+GGG - chr7_3:67118907-67118926 None:intergenic 55.0%
TCTTCGTGGTAGAAGGGTGG+TGG - chr7_3:67120023-67120042 None:intergenic 55.0%
GCTTCTTCGTGGTAGAAGGG+TGG - chr7_3:67120026-67120045 None:intergenic 55.0%
GGAACTCCTTGGACCTGAGA+AGG + chr7_3:67120345-67120364 Msa1118460:CDS 55.0%
! AGAGGAGCCTTTTGGCGAAC+TGG + chr7_3:67120435-67120454 Msa1118460:CDS 55.0%
! GAGGAGCCTTTTGGCGAACT+GGG + chr7_3:67120436-67120455 Msa1118460:CDS 55.0%
CCTTCTCCCAGTTCGCCAAA+AGG - chr7_3:67120445-67120464 None:intergenic 55.0%
! CCTTTTGGCGAACTGGGAGA+AGG + chr7_3:67120442-67120461 Msa1118460:CDS 55.0%
! AATCGGCTAGTTGAGGCCAC+TGG + chr7_3:67120523-67120542 Msa1118460:CDS 55.0%
TCAGACAGTCCTGATCCACG+GGG + chr7_3:67120583-67120602 Msa1118460:CDS 55.0%
CACTATTGGTACCTCGGTGG+AGG + chr7_3:67120705-67120724 Msa1118460:CDS 55.0%
ATTGGTACCTCGGTGGAGGT+AGG + chr7_3:67120709-67120728 Msa1118460:CDS 55.0%
TGCAATTCCTACCTCCACCG+AGG - chr7_3:67120719-67120738 None:intergenic 55.0%
CCCAAGACGCCATATGCTAG+AGG - chr7_3:67121017-67121036 None:intergenic 55.0%
ACCCTCTCGTGATTGCAGGA+TGG + chr7_3:67122595-67122614 Msa1118460:CDS 55.0%
TACATTGCTAGGGCTGGGAG+TGG + chr7_3:67123365-67123384 Msa1118460:CDS 55.0%
GGATGAGCTTGCAGAGGAAC+TGG + chr7_3:67123885-67123904 Msa1118460:CDS 55.0%
CTTGCAGAGGAACTGGGCAT+AGG + chr7_3:67123892-67123911 Msa1118460:CDS 55.0%
GACGTTGCGGTTCAGAGGGA+TGG - chr7_3:67118908-67118927 None:intergenic 60.0%
ACAGTCCTGATCCACGGGGT+GGG + chr7_3:67120587-67120606 Msa1118460:CDS 60.0%
! GGTGGGCCACGTGTTAGCTT+TGG + chr7_3:67120604-67120623 Msa1118460:CDS 60.0%
GTGTAGTGCTGTGACGACGG+AGG + chr7_3:67121303-67121322 Msa1118460:intron 60.0%
TCACTTGCGGGTCCCTTTGC+TGG + chr7_3:67122141-67122160 Msa1118460:CDS 60.0%
GACAGTCCTGATCCACGGGG+TGG + chr7_3:67120586-67120605 Msa1118460:CDS 65.0%
GCACAGACCTGCCACCGTCA+AGG - chr7_3:67122793-67122812 None:intergenic 65.0%
TGACGGTGGCAGGTCTGTGC+AGG + chr7_3:67122793-67122812 Msa1118460:CDS 65.0%
CTAACACGTGGCCCACCCCG+TGG - chr7_3:67120601-67120620 None:intergenic 70.0%
! TGGGGTGCCTTGACGGTGGC+AGG + chr7_3:67122783-67122802 Msa1118460:CDS 70.0%
CGTGGCCCACCCCGTGGATC+AGG - chr7_3:67120595-67120614 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 67118780 67124147 67118780 ID=Msa1118460;Name=Msa1118460
chr7_3 mRNA 67118780 67124147 67118780 ID=Msa1118460-mRNA-1;Parent=Msa1118460;Name=Msa1118460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|1|1|10|214|542
chr7_3 exon 67118780 67119281 67118780 ID=Msa1118460-mRNA-1:exon:16410;Parent=Msa1118460-mRNA-1
chr7_3 exon 67120283 67120744 67120283 ID=Msa1118460-mRNA-1:exon:16411;Parent=Msa1118460-mRNA-1
chr7_3 exon 67120912 67121052 67120912 ID=Msa1118460-mRNA-1:exon:16412;Parent=Msa1118460-mRNA-1
chr7_3 exon 67121804 67121905 67121804 ID=Msa1118460-mRNA-1:exon:16413;Parent=Msa1118460-mRNA-1
chr7_3 exon 67122099 67122310 67122099 ID=Msa1118460-mRNA-1:exon:16414;Parent=Msa1118460-mRNA-1
chr7_3 exon 67122566 67122616 67122566 ID=Msa1118460-mRNA-1:exon:16415;Parent=Msa1118460-mRNA-1
chr7_3 exon 67122745 67122814 67122745 ID=Msa1118460-mRNA-1:exon:16416;Parent=Msa1118460-mRNA-1
chr7_3 exon 67123318 67123386 67123318 ID=Msa1118460-mRNA-1:exon:16417;Parent=Msa1118460-mRNA-1
chr7_3 exon 67123641 67123691 67123641 ID=Msa1118460-mRNA-1:exon:16418;Parent=Msa1118460-mRNA-1
chr7_3 exon 67123775 67124147 67123775 ID=Msa1118460-mRNA-1:exon:16419;Parent=Msa1118460-mRNA-1
chr7_3 five_prime_UTR 67118780 67118969 67118780 ID=Msa1118460-mRNA-1:five_prime_utr;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67118970 67119281 67118970 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67120283 67120744 67120283 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67120912 67121052 67120912 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67121804 67121905 67121804 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67122099 67122310 67122099 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67122566 67122616 67122566 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67122745 67122814 67122745 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67123318 67123386 67123318 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67123641 67123691 67123641 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 CDS 67123775 67123933 67123775 ID=Msa1118460-mRNA-1:cds;Parent=Msa1118460-mRNA-1
chr7_3 three_prime_UTR 67123934 67124147 67123934 ID=Msa1118460-mRNA-1:three_prime_utr;Parent=Msa1118460-mRNA-1
Gene Sequence

>Msa1118460

ATGGGAACTTTAACAAATTGCACTTTACTCCCTCTAAACTCAGAGTTCCGGTTCAAACCGGTTCACTGTTCCTTCAGGAACAAAATCCACTACAACCACCGTTTCAATTCACATGTATCCAAATGGGCAAAGTTGAAGCACGTTGATTTCGATAGGTTTAAGTGTTTTTCAATCAATAACAAAGACGGTGTTGATGATGAAGGGGAAAATGGTAACAAGAATGAGTCTAAATCCAATGTAACCACAGTGTTACCTGATGAAGATAGAGGCTTTAATTCTGATAAATCAACAACCCCTTCCACTTCTCAACGGTCATCTTTGTCCTCACTTGGATCTGTGTACAACAATTTTCAAGTTGATTCTTTCAAACTCATGGAACTCCTTGGACCTGAGAAGGTTGATCCTGCTGATGTAAAGAAAATTAAGGATAAGCTTTTTGGTTATTCAACCTTTTGGGTGACCAAAGAGGAGCCTTTTGGCGAACTGGGAGAAGGCGTTCTTTTCATCGGAAATTTAAGGGGAAAGAGAGAGGACGTTTTTTCCATACTCCAAAATCGGCTAGTTGAGGCCACTGGCGATAAGTACAACCTTTTTATGGTAGAGGAACCTGATTCAGACAGTCCTGATCCACGGGGTGGGCCACGTGTTAGCTTTGGTTTGCTGCGTAAGGAGGTTTCCGAGCCAGAAGAAACAACACTTTGGCAATATGTCGTTGCATCTCTGTTGTTTCTTCTCACTATTGGTACCTCGGTGGAGGTAGGAATTGCATCTCAGATCAACAGACTCCCCCCAGTACTAGTGAAATTCTTGACAGATCCTAACTATACTGAAGCCCCAGATATGGAGATGCTATATCCATTTGTTGAGTCAGCGTTACCTCTAGCATATGGCGTCTTGGGAGTTCTTCTATTTCATGAGGTTGGACACTTTTTAGCTGCATTTCCCAAACAAGTAAAATTAAGCATTCCTTTCTTCATTCCCCATATCACTCTTGGCAGCTTTGGTGCTATTACTCAGTTTAAATCTATCCTTCCTGATAGAAGTACTCAAGTAGACATATCACTTGCGGGTCCCTTTGCTGGTGCTGTGCTATCATTTTCGATGTTTGCTGTTGGCCTTCTTCTTTCATCAAATCCAGATGTAGCTGGAGATTTGGTGCAAGTTCCTAGCATGTTGTTTCAAGGTTCTTTGCTACTTGGTTTAATCAGTAGAGCAACTCTTGGTTATGCAGCGGTTCATGCTGCAACAGTTCCAATTCACCCTCTCGTGATTGCAGGATGGTGTGGGTTAACCATACAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGACGGTGGCAGGTCTGTGCAGGGTGCTTTTGGAAAAGGTGCACTAATGGTCTTTGGTTTGACCACTTATACATTGCTAGGGCTGGGAGTGCTTGGTGGACCTCTTTCACTTGCTTGGGGATTTTTTGTCATATTTTCGCAGAGATCACCGGAGAAACCATGCTTAAATGACGTGACAGAAGTTGGAACATGGAGACAGACATTTGTGGGGGTTGCTATTTTTCTTGCTGTCTTGACTCTTCTTCCTGTTTGGGATGAGCTTGCAGAGGAACTGGGCATAGGTCTTGTAACCACATTTTAG

Protein sequence

>Msa1118460

MGTLTNCTLLPLNSEFRFKPVHCSFRNKIHYNHRFNSHVSKWAKLKHVDFDRFKCFSINNKDGVDDEGENGNKNESKSNVTTVLPDEDRGFNSDKSTTPSTSQRSSLSSLGSVYNNFQVDSFKLMELLGPEKVDPADVKKIKDKLFGYSTFWVTKEEPFGELGEGVLFIGNLRGKREDVFSILQNRLVEATGDKYNLFMVEEPDSDSPDPRGGPRVSFGLLRKEVSEPEETTLWQYVVASLLFLLTIGTSVEVGIASQINRLPPVLVKFLTDPNYTEAPDMEMLYPFVESALPLAYGVLGVLLFHEVGHFLAAFPKQVKLSIPFFIPHITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDVAGDLVQVPSMLFQGSLLLGLISRATLGYAAVHAATVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRSVQGAFGKGALMVFGLTTYTLLGLGVLGGPLSLAWGFFVIFSQRSPEKPCLNDVTEVGTWRQTFVGVAIFLAVLTLLPVWDELAEELGIGLVTTF*