AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353040 MtrunA17_Chr5g0395171 93.377 151 9 1 25 174 13 163 6.08e-100 285
Msa1353040 MtrunA17_Chr5g0407361 43.564 101 51 3 62 157 51 150 2.08e-17 75.1
Msa1353040 MtrunA17_Chr3g0144161 42.857 98 52 3 73 168 68 163 6.28e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353040 AT5G16660.1 51.701 147 67 3 29 172 20 165 3.04e-46 149
Msa1353040 AT5G16660.2 52.941 153 65 6 25 173 15 164 1.30e-41 137
Msa1353040 AT3G02900.1 47.771 157 68 4 24 173 11 160 5.98e-40 133
Msa1353040 AT3G02900.2 50.000 130 56 3 51 173 39 166 4.26e-36 123
Msa1353040 AT1G42960.1 41.228 114 59 4 61 168 51 162 3.79e-19 80.1

Find 61 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTGCTGGCTTTCTTC+TGG 0.108341 tig0013070:+4787 Msa1353040:CDS
GTCAACGATACATCGAAAAT+TGG 0.187441 tig0013070:+6480 Msa1353040:three_prime_UTR
CTGCTAAATGAAGATGAATA+TGG 0.203723 tig0013070:+6044 Msa1353040:CDS
CTTCAAATGCCTTCAAATTC+AGG 0.204641 tig0013070:-6432 None:intergenic
TACTGTCCATGGAAATAAAA+TGG 0.263122 tig0013070:-6585 None:intergenic
AGAGGTGGGGATTTGGTTGC+TGG 0.280443 tig0013070:+4776 Msa1353040:CDS
GACTGTCAACGTTTGTGTTT+TGG 0.294312 tig0013070:+6676 Msa1353040:three_prime_UTR
AAAATATACAGTATGGATTA+TGG 0.296871 tig0013070:+6608 Msa1353040:three_prime_UTR
TTGGTTGCTGGCTTTCTTCT+GGG 0.303767 tig0013070:+4788 Msa1353040:CDS
AAGCTGCGAATGTTTGTTAC+AGG 0.313148 tig0013070:+6859 Msa1353040:three_prime_UTR
CTGCACGAACCGGTGAAATA+AGG 0.322738 tig0013070:-3886 None:intergenic
AGCCCTTTGTCATAATAATA+AGG 0.344010 tig0013070:-6089 None:intergenic
TGATAACAGAGGTGGGGATT+TGG 0.357687 tig0013070:+4769 Msa1353040:CDS
ATTCAGGATCACTTTCTAAA+GGG 0.373701 tig0013070:-6416 None:intergenic
TATCAATGGCAGAATTTAGT+TGG 0.383082 tig0013070:-6347 None:intergenic
CGGTGAAATAAGGTTCCTTC+TGG 0.390363 tig0013070:-3876 None:intergenic
TTGTAGAAGCAAATGGCAAA+TGG 0.399945 tig0013070:+1490 Msa1353040:intron
AAAGCTGTCAAAATCTTTAG+TGG 0.399963 tig0013070:+6561 Msa1353040:three_prime_UTR
CGCTTTGCACTTAATGATGA+AGG 0.399993 tig0013070:+1522 Msa1353040:CDS
GAAAGTGATCCTGAATTTGA+AGG 0.404369 tig0013070:+6423 Msa1353040:CDS
TTGGCCTATCTTATCATTCA+AGG 0.409252 tig0013070:-6328 None:intergenic
AAGCGTAATTCATCTGTGTT+TGG 0.421907 tig0013070:+3812 Msa1353040:CDS
AATTATAGCAATAGAGGGTC+TGG 0.424355 tig0013070:-6725 None:intergenic
AATTCAGGATCACTTTCTAA+AGG 0.440983 tig0013070:-6417 None:intergenic
ATAATAATAAGGTGGTCTTC+TGG 0.442456 tig0013070:-6078 None:intergenic
CACCTTATTATTATGACAAA+GGG 0.449039 tig0013070:+6087 Msa1353040:CDS
TACCGTTGTTCTGCACGAAC+CGG 0.449371 tig0013070:-3896 None:intergenic
CTTTGAACAGCAGCAAGCTT+AGG 0.449964 tig0013070:-3836 None:intergenic
GTTTCTGAATGCAGAGGACC+AGG 0.463024 tig0013070:+6301 Msa1353040:intron
TGCTAAATGAAGATGAATAT+GGG 0.463822 tig0013070:+6045 Msa1353040:CDS
GTGTTGGTGCTGGATTGATA+TGG 0.467628 tig0013070:+6536 Msa1353040:three_prime_UTR
TCAACGATACATCGAAAATT+GGG 0.470889 tig0013070:+6481 Msa1353040:three_prime_UTR
TGTAGAAGCAAATGGCAAAT+GGG 0.476601 tig0013070:+1491 Msa1353040:intron
GAGACCTTGAATGATAAGAT+AGG 0.479761 tig0013070:+6324 Msa1353040:CDS
TTAATGATGAAGGCTGTGTT+TGG 0.483468 tig0013070:+1532 Msa1353040:CDS
CAGAAGGAACCTTATTTCAC+CGG 0.501192 tig0013070:+3877 Msa1353040:CDS
ATGTTATTTGACAGTTTGAA+AGG 0.501388 tig0013070:+6507 Msa1353040:three_prime_UTR
CTTATCATTCAAGGTCTCCC+TGG 0.516050 tig0013070:-6319 None:intergenic
AATAAGAAACAGACTACTGC+TGG 0.525540 tig0013070:-6649 None:intergenic
CTAAGCTTGCTGCTGTTCAA+AGG 0.526007 tig0013070:+3837 Msa1353040:CDS
ACGTACAGATATATTATCAA+TGG 0.553012 tig0013070:-6361 None:intergenic
AAGATGAATATGGGTTTCGT+AGG 0.554302 tig0013070:+6054 Msa1353040:CDS
CCACCTTATTATTATGACAA+AGG 0.557116 tig0013070:+6086 Msa1353040:CDS
TAAGGTTCCTTCTGGTCACA+AGG 0.558149 tig0013070:-3868 None:intergenic
ATTTGTGTAAAAGAAAATTG+AGG 0.558500 tig0013070:-6934 None:intergenic
TTCAGGATCACTTTCTAAAG+GGG 0.565814 tig0013070:-6415 None:intergenic
CGTTGACAAGAGTATCGAGC+TGG 0.568983 tig0013070:-6464 None:intergenic
CTTTCTAAAGGGGCAGCAGT+AGG 0.569227 tig0013070:-6405 None:intergenic
CACCGGTTCGTGCAGAACAA+CGG 0.572053 tig0013070:+3894 Msa1353040:CDS
AATCAAACCTTGTGACCAGA+AGG 0.589168 tig0013070:+3861 Msa1353040:CDS
TTATTATGACAAAGGGCTAG+AGG 0.597651 tig0013070:+6094 Msa1353040:CDS
GTTGCTGGCTTTCTTCTGGG+TGG 0.601949 tig0013070:+4791 Msa1353040:CDS
TTGTGCAGTGATAACAGAGG+TGG 0.604543 tig0013070:+4761 Msa1353040:intron
TGTGCAGTGATAACAGAGGT+GGG 0.614866 tig0013070:+4762 Msa1353040:intron
AGATGAATATGGGTTTCGTA+GGG 0.632129 tig0013070:+6055 Msa1353040:CDS
AATATATCTGTACGTCTGAG+AGG 0.656883 tig0013070:+6369 Msa1353040:CDS
GTGCAGTGATAACAGAGGTG+GGG 0.664089 tig0013070:+4763 Msa1353040:intron
CCTTTGTCATAATAATAAGG+TGG 0.683408 tig0013070:-6086 None:intergenic
TTTCTGAATGCAGAGGACCA+GGG 0.699975 tig0013070:+6302 Msa1353040:intron
CTTCATCATTAAGTGCAAAG+CGG 0.713221 tig0013070:-1521 None:intergenic
CCTTTGTGCAGTGATAACAG+AGG 0.741745 tig0013070:+4758 Msa1353040:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATCTATCAAATTTAA+GGG + tig0013070:1240-1259 Msa1353040:intron 10.0%
!!! GATTTTTAATTTAAAAACTA+AGG - tig0013070:6818-6837 None:intergenic 10.0%
!! GATAAAATCTATCAAATTTA+AGG + tig0013070:1239-1258 Msa1353040:intron 15.0%
!!! AAAAAATGTTGTTTTTTTGA+AGG - tig0013070:1345-1364 None:intergenic 15.0%
!! TAAATTAACAAGGTTATAAT+TGG - tig0013070:1724-1743 None:intergenic 15.0%
!! AATGTGCTTTATAAATTAAT+AGG - tig0013070:2005-2024 None:intergenic 15.0%
!! TAAGTATAAAATGACATAAA+AGG - tig0013070:2138-2157 None:intergenic 15.0%
!! CTTATTAAAAATAATGTGTT+TGG - tig0013070:2186-2205 None:intergenic 15.0%
!!! ACTTCATTGAATTTAATTTT+AGG + tig0013070:3482-3501 Msa1353040:intron 15.0%
!!! CTTCATTGAATTTAATTTTA+GGG + tig0013070:3483-3502 Msa1353040:intron 15.0%
!!! TAATAATAGCTTAGATTTTT+CGG + tig0013070:3611-3630 Msa1353040:intron 15.0%
!! AATCATAATCATAATTGAAA+TGG - tig0013070:3713-3732 None:intergenic 15.0%
!!! CTTTAAATTTTAAGTGAAAA+TGG - tig0013070:4517-4536 None:intergenic 15.0%
!!! CATTTTCACTTAAAATTTAA+AGG + tig0013070:4515-4534 Msa1353040:intron 15.0%
!!! ATATGTTTTTTTCAAACAAA+TGG + tig0013070:4563-4582 Msa1353040:intron 15.0%
!! AACTATAAACTTAATTACAA+AGG - tig0013070:5146-5165 None:intergenic 15.0%
!! ATAAAAATTATAGCAATAGA+GGG - tig0013070:6733-6752 None:intergenic 15.0%
!! AATAAAAATTATAGCAATAG+AGG - tig0013070:6734-6753 None:intergenic 15.0%
!! AAAATCTATTAAGAAAAACT+AGG + tig0013070:6832-6851 Msa1353040:three_prime_UTR 15.0%
!! TTTAAAAGTTGTGCATATAT+AGG + tig0013070:1365-1384 Msa1353040:intron 20.0%
!! TCTTATATGAATTAAAAGCA+AGG - tig0013070:1888-1907 None:intergenic 20.0%
!! AATGAATCATATGGATAAAA+GGG - tig0013070:2815-2834 None:intergenic 20.0%
!! ATTTACTCTTTATTATGATC+CGG - tig0013070:2884-2903 None:intergenic 20.0%
!! AATAGATTTGAGAGTAATTT+AGG + tig0013070:2901-2920 Msa1353040:intron 20.0%
!! AAATTTAATAGTGCTAACAA+AGG + tig0013070:2994-3013 Msa1353040:intron 20.0%
!! TAGAATAATAAACGAAGAAA+TGG - tig0013070:3540-3559 None:intergenic 20.0%
!! TGAATTCGAAAAACAAAAAA+AGG - tig0013070:3677-3696 None:intergenic 20.0%
!! AGAAGATATATTATCATTGA+TGG - tig0013070:5413-5432 None:intergenic 20.0%
!! AAAAAAAAAAAAGACTCGTA+TGG + tig0013070:5447-5466 Msa1353040:intron 20.0%
!! AATATTGAATATAAAGCCAA+GGG - tig0013070:6131-6150 None:intergenic 20.0%
!! AAATATTGAATATAAAGCCA+AGG - tig0013070:6132-6151 None:intergenic 20.0%
!!! ATTCAATATTTTTGTGTAGT+TGG + tig0013070:6141-6160 Msa1353040:intron 20.0%
!!! AAAATATACAGTATGGATTA+TGG + tig0013070:6608-6627 Msa1353040:three_prime_UTR 20.0%
!! ATTTGTGTAAAAGAAAATTG+AGG - tig0013070:6937-6956 None:intergenic 20.0%
! ACCTCAAAAACTAATAAACA+TGG + tig0013070:1113-1132 Msa1353040:intron 25.0%
!!! TCCATGTTTATTAGTTTTTG+AGG - tig0013070:1117-1136 None:intergenic 25.0%
!! AATTGTTATTCAACCATGTA+AGG - tig0013070:1182-1201 None:intergenic 25.0%
!! TACGACATCTTTAAAAAAGA+AGG + tig0013070:1291-1310 Msa1353040:intron 25.0%
! AAATCAGTGTTAGAATTAGA+AGG - tig0013070:2387-2406 None:intergenic 25.0%
! GAATGAATCATATGGATAAA+AGG - tig0013070:2816-2835 None:intergenic 25.0%
! AAACCACTTAATTCAATCAA+AGG + tig0013070:2838-2857 Msa1353040:intron 25.0%
! AGATTACAATCAATTTACGT+CGG + tig0013070:3571-3590 Msa1353040:intron 25.0%
!!! AATTGATTTGATTTTGCAGT+TGG + tig0013070:3752-3771 Msa1353040:intron 25.0%
!! ATGTATAGTTATTGACTGTT+TGG + tig0013070:3981-4000 Msa1353040:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG - tig0013070:4113-4132 None:intergenic 25.0%
!! CAAGAATCTCTATTTACTTT+TGG + tig0013070:4244-4263 Msa1353040:intron 25.0%
! AGATAAGCTAGAACTATATA+AGG - tig0013070:4302-4321 None:intergenic 25.0%
!!! TTTTTCAAACAAATGGTGAA+TGG + tig0013070:4570-4589 Msa1353040:intron 25.0%
! AAAAATATCATGAAAGAGAG+AGG - tig0013070:4606-4625 None:intergenic 25.0%
!! ATCTTATAGGTTGCTTATTT+TGG + tig0013070:4700-4719 Msa1353040:intron 25.0%
! ATTTGCAATAAAACTGAAGT+AGG - tig0013070:4867-4886 None:intergenic 25.0%
!!! TTAAGTTTATAGTTTGCTGA+TGG + tig0013070:5152-5171 Msa1353040:intron 25.0%
! TAAACTTGTGTCAATTCTTA+TGG + tig0013070:5215-5234 Msa1353040:intron 25.0%
!! GAGTATTGCTGTTAATATAA+TGG - tig0013070:5477-5496 None:intergenic 25.0%
!! GAATTAACTTTTCAAAGGAT+AGG + tig0013070:5624-5643 Msa1353040:intron 25.0%
! TAAGACATAATAACAAGAGA+GGG - tig0013070:5809-5828 None:intergenic 25.0%
! TTAAGACATAATAACAAGAG+AGG - tig0013070:5810-5829 None:intergenic 25.0%
! GTTATTATGTCTTAAGTACT+CGG + tig0013070:5815-5834 Msa1353040:intron 25.0%
!!! TTATTTTAGCAAAACGTTGA+AGG + tig0013070:5840-5859 Msa1353040:intron 25.0%
! TGCTAAATGAAGATGAATAT+GGG + tig0013070:6045-6064 Msa1353040:CDS 25.0%
! CACCTTATTATTATGACAAA+GGG + tig0013070:6087-6106 Msa1353040:CDS 25.0%
! ACGTACAGATATATTATCAA+TGG - tig0013070:6364-6383 None:intergenic 25.0%
!! ATGTTATTTGACAGTTTGAA+AGG + tig0013070:6507-6526 Msa1353040:three_prime_UTR 25.0%
! GACAGTAAAAATATACAGTA+TGG + tig0013070:6601-6620 Msa1353040:three_prime_UTR 25.0%
!!! ATTAGTTTTTGAGGTCTGTT+TGG - tig0013070:1108-1127 None:intergenic 30.0%
!! AAACATTAGTTTGCCTTACA+TGG + tig0013070:1166-1185 Msa1353040:intron 30.0%
TATAAGATTCGTACGAGATT+TGG + tig0013070:1210-1229 Msa1353040:intron 30.0%
TTATGTCACCTGTAGAATTT+AGG - tig0013070:1266-1285 None:intergenic 30.0%
TGTGCATATATAGGTTAGAA+TGG + tig0013070:1374-1393 Msa1353040:intron 30.0%
GCTTCTACAAAAATTGGTAA+GGG - tig0013070:1480-1499 None:intergenic 30.0%
TGCTTCTACAAAAATTGGTA+AGG - tig0013070:1481-1500 None:intergenic 30.0%
CCATTTGCTTCTACAAAAAT+TGG - tig0013070:1486-1505 None:intergenic 30.0%
! CCAATTTTTGTAGAAGCAAA+TGG + tig0013070:1483-1502 Msa1353040:intron 30.0%
! GAATTAGCTTATAAGCTTGT+TGG + tig0013070:1585-1604 Msa1353040:intron 30.0%
GGTAAAATTAGTTGTTGAAG+TGG - tig0013070:2165-2184 None:intergenic 30.0%
ACAAAGACTTAAGACATGAA+TGG - tig0013070:2333-2352 None:intergenic 30.0%
!!! AACAAGTGAGTTTTTTAGGT+TGG - tig0013070:2442-2461 None:intergenic 30.0%
!!! ATGGAACAAGTGAGTTTTTT+AGG - tig0013070:2446-2465 None:intergenic 30.0%
TATGATACTGATCATCAACA+TGG - tig0013070:2465-2484 None:intergenic 30.0%
!! TGTTGATGATCAGTATCATA+AGG + tig0013070:2465-2484 Msa1353040:intron 30.0%
GATAATCGTACTACATATCT+AGG + tig0013070:2750-2769 Msa1353040:intron 30.0%
! TGGTTTTCGAATGAATCATA+TGG - tig0013070:2824-2843 None:intergenic 30.0%
TCTCCTTTGATTGAATTAAG+TGG - tig0013070:2844-2863 None:intergenic 30.0%
! TATATCTATGCTACTTCAGA+TGG - tig0013070:2967-2986 None:intergenic 30.0%
GTCGATTATATCAAAGTAGT+AGG + tig0013070:3221-3240 Msa1353040:intron 30.0%
GAGATGAATAGAAACGAAAA+GGG - tig0013070:3455-3474 None:intergenic 30.0%
TGAGATGAATAGAAACGAAA+AGG - tig0013070:3456-3475 None:intergenic 30.0%
GGATTTCTAATTATAAGCCA+CGG - tig0013070:3928-3947 None:intergenic 30.0%
! CCACAAAATGAATTTGAAGT+CGG + tig0013070:3946-3965 Msa1353040:intron 30.0%
! CACAAAATGAATTTGAAGTC+GGG + tig0013070:3947-3966 Msa1353040:intron 30.0%
TTGTATATAAATGCCCTGTT+TGG - tig0013070:4219-4238 None:intergenic 30.0%
! AAACAGGGCATTTATATACA+AGG + tig0013070:4218-4237 Msa1353040:intron 30.0%
! ACAAGTATTTTCACACTAGA+TGG + tig0013070:4339-4358 Msa1353040:intron 30.0%
! CAAGTATTTTCACACTAGAT+GGG + tig0013070:4340-4359 Msa1353040:intron 30.0%
! AAGTATTTTCACACTAGATG+GGG + tig0013070:4341-4360 Msa1353040:intron 30.0%
TGAAATCAGAAGATACAAGT+GGG - tig0013070:4494-4513 None:intergenic 30.0%
! CTATCCAAAAAGTATGAGAA+AGG + tig0013070:4925-4944 Msa1353040:intron 30.0%
! TCTTCCTTTCTCATACTTTT+TGG - tig0013070:4932-4951 None:intergenic 30.0%
! AGGCTCTCTTTTTATAAGTT+AGG - tig0013070:5126-5145 None:intergenic 30.0%
AGAGAGCTTTCAAAAAAGTT+GGG + tig0013070:5187-5206 Msa1353040:intron 30.0%
! CTCTAAGAATACAATCCAAT+GGG - tig0013070:5276-5295 None:intergenic 30.0%
! TCTCTAAGAATACAATCCAA+TGG - tig0013070:5277-5296 None:intergenic 30.0%
ATTGTATTCTTAGAGAGTAG+TGG + tig0013070:5281-5300 Msa1353040:intron 30.0%
ATGGTACTAAACTCACATAT+GGG - tig0013070:5378-5397 None:intergenic 30.0%
AATGGTACTAAACTCACATA+TGG - tig0013070:5379-5398 None:intergenic 30.0%
TTGATGGAGATAAGTACAAA+TGG - tig0013070:5397-5416 None:intergenic 30.0%
CATTAAACAAATGTTGCACT+AGG - tig0013070:5593-5612 None:intergenic 30.0%
! GAGCTGAATTAACTTTTCAA+AGG + tig0013070:5619-5638 Msa1353040:intron 30.0%
! ACTACTAACTTTTCCATCTT+TGG + tig0013070:5782-5801 Msa1353040:intron 30.0%
ACATACTATGAGCTTCTAAA+TGG - tig0013070:5994-6013 None:intergenic 30.0%
TAGAAGCTCATAGTATGTTA+TGG + tig0013070:5996-6015 Msa1353040:intron 30.0%
CTGCTAAATGAAGATGAATA+TGG + tig0013070:6044-6063 Msa1353040:CDS 30.0%
ATAATAATAAGGTGGTCTTC+TGG - tig0013070:6081-6100 None:intergenic 30.0%
CCTTTGTCATAATAATAAGG+TGG - tig0013070:6089-6108 None:intergenic 30.0%
CCACCTTATTATTATGACAA+AGG + tig0013070:6086-6105 Msa1353040:CDS 30.0%
AGCCCTTTGTCATAATAATA+AGG - tig0013070:6092-6111 None:intergenic 30.0%
! TTTGTGTAGTTGGTATATAC+TGG + tig0013070:6151-6170 Msa1353040:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + tig0013070:6171-6190 Msa1353040:intron 30.0%
! GTTGTTGTTGTTGTTGTAAT+TGG + tig0013070:6244-6263 Msa1353040:intron 30.0%
TATCAATGGCAGAATTTAGT+TGG - tig0013070:6350-6369 None:intergenic 30.0%
ATTCAGGATCACTTTCTAAA+GGG - tig0013070:6419-6438 None:intergenic 30.0%
AATTCAGGATCACTTTCTAA+AGG - tig0013070:6420-6439 None:intergenic 30.0%
TCAACGATACATCGAAAATT+GGG + tig0013070:6481-6500 Msa1353040:three_prime_UTR 30.0%
! GTTTGAAAGGTAAAAAGTGT+TGG + tig0013070:6520-6539 Msa1353040:three_prime_UTR 30.0%
AAAGCTGTCAAAATCTTTAG+TGG + tig0013070:6561-6580 Msa1353040:three_prime_UTR 30.0%
TACTGTCCATGGAAATAAAA+TGG - tig0013070:6588-6607 None:intergenic 30.0%
!! CTGTATATTTTTACTGTCCA+TGG - tig0013070:6599-6618 None:intergenic 30.0%
! TTCGTACGAGATTTGGTATT+TGG + tig0013070:1217-1236 Msa1353040:intron 35.0%
TTTAAGGGCCTAAATTCTAC+AGG + tig0013070:1255-1274 Msa1353040:intron 35.0%
TTGTAGAAGCAAATGGCAAA+TGG + tig0013070:1490-1509 Msa1353040:intron 35.0%
TGTAGAAGCAAATGGCAAAT+GGG + tig0013070:1491-1510 Msa1353040:intron 35.0%
CTTCATCATTAAGTGCAAAG+CGG - tig0013070:1524-1543 None:intergenic 35.0%
TTAATGATGAAGGCTGTGTT+TGG + tig0013070:1532-1551 Msa1353040:CDS 35.0%
AAGTCTTTGTATACGCTACT+TGG + tig0013070:2343-2362 Msa1353040:intron 35.0%
AGTCTTTGTATACGCTACTT+GGG + tig0013070:2344-2363 Msa1353040:intron 35.0%
CTCTCTCAATATACGATGTT+AGG - tig0013070:2517-2536 None:intergenic 35.0%
AACATCGTATATTGAGAGAG+TGG + tig0013070:2517-2536 Msa1353040:intron 35.0%
TAAATCAATGTCACGCGATT+AGG + tig0013070:3272-3291 Msa1353040:intron 35.0%
TGACCTGAAGAAATCGATAA+TGG - tig0013070:3423-3442 None:intergenic 35.0%
AGAAACGAAAAGGGAAAAAG+AGG - tig0013070:3446-3465 None:intergenic 35.0%
TGCGAATCTAAGCAATTCAT+GGG - tig0013070:3642-3661 None:intergenic 35.0%
TTGCGAATCTAAGCAATTCA+TGG - tig0013070:3643-3662 None:intergenic 35.0%
!! TGATTTGATTTTGCAGTTGG+TGG + tig0013070:3755-3774 Msa1353040:intron 35.0%
AAGCGTAATTCATCTGTGTT+TGG + tig0013070:3812-3831 Msa1353040:CDS 35.0%
! CCGACTTCAAATTCATTTTG+TGG - tig0013070:3949-3968 None:intergenic 35.0%
TTGAGCTTATCTATTGCCAT+AGG + tig0013070:4014-4033 Msa1353040:intron 35.0%
AAACAGTCACACAAAACCTA+TGG - tig0013070:4033-4052 None:intergenic 35.0%
TAGGAAAACAGCTTATGACA+TGG + tig0013070:4062-4081 Msa1353040:intron 35.0%
TTCAAACATAGCAACTAGCA+TGG - tig0013070:4404-4423 None:intergenic 35.0%
GACCAGATGTGAAGAAATAA+TGG + tig0013070:4438-4457 Msa1353040:intron 35.0%
! CACCATTATTTCTTCACATC+TGG - tig0013070:4443-4462 None:intergenic 35.0%
GTGAAATCAGAAGATACAAG+TGG - tig0013070:4495-4514 None:intergenic 35.0%
TCAAACAAATGGTGAATGGT+CGG + tig0013070:4574-4593 Msa1353040:intron 35.0%
TGCACCTTTCTTGATCTTAT+AGG + tig0013070:4687-4706 Msa1353040:intron 35.0%
GCAACCTATAAGATCAAGAA+AGG - tig0013070:4694-4713 None:intergenic 35.0%
CCATGTGATAAATGACTACT+CGG + tig0013070:4960-4979 Msa1353040:intron 35.0%
TCATTAACTACAGCCCAATT+TGG + tig0013070:5051-5070 Msa1353040:intron 35.0%
CCTAGAAACTAGTCCAAATT+GGG - tig0013070:5067-5086 None:intergenic 35.0%
ACCTAGAAACTAGTCCAAAT+TGG - tig0013070:5068-5087 None:intergenic 35.0%
GAGAGAGCTTTCAAAAAAGT+TGG + tig0013070:5186-5205 Msa1353040:intron 35.0%
! CTCCATGTCTGTTTTATGAA+TGG + tig0013070:5242-5261 Msa1353040:intron 35.0%
TGCCATTCATAAAACAGACA+TGG - tig0013070:5247-5266 None:intergenic 35.0%
TATGGGGATGAATGAAGTAT+AGG - tig0013070:5361-5380 None:intergenic 35.0%
TGGTACTAAACTCACATATG+GGG - tig0013070:5377-5396 None:intergenic 35.0%
TGAAGTGATGAAGAGTTAGT+AGG - tig0013070:5561-5580 None:intergenic 35.0%
CAATATGCTGCATTGCAAAT+GGG + tig0013070:5703-5722 Msa1353040:intron 35.0%
AAGATGAATATGGGTTTCGT+AGG + tig0013070:6054-6073 Msa1353040:CDS 35.0%
AGATGAATATGGGTTTCGTA+GGG + tig0013070:6055-6074 Msa1353040:CDS 35.0%
TTATTATGACAAAGGGCTAG+AGG + tig0013070:6094-6113 Msa1353040:CDS 35.0%
GAGACCTTGAATGATAAGAT+AGG + tig0013070:6324-6343 Msa1353040:CDS 35.0%
TTGGCCTATCTTATCATTCA+AGG - tig0013070:6331-6350 None:intergenic 35.0%
AATATATCTGTACGTCTGAG+AGG + tig0013070:6369-6388 Msa1353040:CDS 35.0%
! TTCAGGATCACTTTCTAAAG+GGG - tig0013070:6418-6437 None:intergenic 35.0%
GAAAGTGATCCTGAATTTGA+AGG + tig0013070:6423-6442 Msa1353040:CDS 35.0%
CTTCAAATGCCTTCAAATTC+AGG - tig0013070:6435-6454 None:intergenic 35.0%
GTCAACGATACATCGAAAAT+TGG + tig0013070:6480-6499 Msa1353040:three_prime_UTR 35.0%
!! AGTGGACCATTTTATTTCCA+TGG + tig0013070:6579-6598 Msa1353040:three_prime_UTR 35.0%
AATAAGAAACAGACTACTGC+TGG - tig0013070:6652-6671 None:intergenic 35.0%
AATTATAGCAATAGAGGGTC+TGG - tig0013070:6728-6747 None:intergenic 35.0%
!! TGTTTGGTTGATTTGATGCC+TGG - tig0013070:1092-1111 None:intergenic 40.0%
!! CATGGATTTTAGTGATGCCA+CGG + tig0013070:1131-1150 Msa1353040:intron 40.0%
!! ATGGATTTTAGTGATGCCAC+GGG + tig0013070:1132-1151 Msa1353040:intron 40.0%
TGTTTGAGTCATATTTCCCG+TGG - tig0013070:1151-1170 None:intergenic 40.0%
CGCTTTGCACTTAATGATGA+AGG + tig0013070:1522-1541 Msa1353040:CDS 40.0%
GGATCAAAATGTGACGTGTT+TGG + tig0013070:1606-1625 Msa1353040:intron 40.0%
!! AATAAGCTGTGAGGTTTTGG+TGG - tig0013070:1807-1826 None:intergenic 40.0%
! TGCAATAAGCTGTGAGGTTT+TGG - tig0013070:1810-1829 None:intergenic 40.0%
TGGTAGTTTCATCACCTCTT+CGG - tig0013070:2313-2332 None:intergenic 40.0%
AAGGGAAAGAGAGACACAAA+TGG - tig0013070:2797-2816 None:intergenic 40.0%
!! GAGTCAACATTTCTAGCAAC+CGG + tig0013070:2862-2881 Msa1353040:intron 40.0%
GAGAAGAGAATTGCTAGCAA+AGG + tig0013070:3243-3262 Msa1353040:intron 40.0%
TGTGTGTGTTTGTGGTTATC+GGG - tig0013070:3335-3354 None:intergenic 40.0%
GTGTGTGTGTTTGTGGTTAT+CGG - tig0013070:3336-3355 None:intergenic 40.0%
TTTCTTCATTCTCTCTCCCA+TGG + tig0013070:3383-3402 Msa1353040:intron 40.0%
! CGCTTTGTTGAAAAAAGCTC+AGG - tig0013070:3797-3816 None:intergenic 40.0%
AATCAAACCTTGTGACCAGA+AGG + tig0013070:3861-3880 Msa1353040:CDS 40.0%
! CAGAAGGAACCTTATTTCAC+CGG + tig0013070:3877-3896 Msa1353040:CDS 40.0%
GTGACTGTTTGAGAGAACTT+AGG + tig0013070:4043-4062 Msa1353040:intron 40.0%
! CTTTTGAATGCTTCGAGCAT+TGG + tig0013070:4649-4668 Msa1353040:intron 40.0%
TGCACAAAGGAGACAGTTAA+TGG - tig0013070:4748-4767 None:intergenic 40.0%
AAGTAGGAAGAAATCACCTG+AGG - tig0013070:4851-4870 None:intergenic 40.0%
CCGAGTAGTCATTTATCACA+TGG - tig0013070:4963-4982 None:intergenic 40.0%
!! CCCAATTTGGACTAGTTTCT+AGG + tig0013070:5064-5083 Msa1353040:intron 40.0%
!! AGTTTGCTGATGGAAGAGTT+AGG + tig0013070:5162-5181 Msa1353040:intron 40.0%
TGAATGGCATGTAAACCCAT+TGG + tig0013070:5258-5277 Msa1353040:intron 40.0%
GAAGTATAGGCGGTAATAAC+AGG - tig0013070:5348-5367 None:intergenic 40.0%
GCAATATGCTGCATTGCAAA+TGG + tig0013070:5702-5721 Msa1353040:intron 40.0%
ACTCTTTGCTGAGACAAACT+AGG - tig0013070:5894-5913 None:intergenic 40.0%
ACAAAGGGCTAGAGGTAATT+TGG + tig0013070:6102-6121 Msa1353040:intron 40.0%
!! TATGCTGTTTCTGAATGCAG+AGG + tig0013070:6295-6314 Msa1353040:intron 40.0%
!! AAGGTAAAAAGTGTTGGTGC+TGG + tig0013070:6526-6545 Msa1353040:three_prime_UTR 40.0%
! GACTGTCAACGTTTGTGTTT+TGG + tig0013070:6676-6695 Msa1353040:three_prime_UTR 40.0%
! AAGCTGCGAATGTTTGTTAC+AGG + tig0013070:6859-6878 Msa1353040:three_prime_UTR 40.0%
TTAAAACGTGGGAACATGGG+TGG - tig0013070:1775-1794 None:intergenic 45.0%
! ACCCATGTTCCCACGTTTTA+AGG + tig0013070:1774-1793 Msa1353040:intron 45.0%
GCCTTAAAACGTGGGAACAT+GGG - tig0013070:1778-1797 None:intergenic 45.0%
AGCCTTAAAACGTGGGAACA+TGG - tig0013070:1779-1798 None:intergenic 45.0%
GGCAGTAAGCCTTAAAACGT+GGG - tig0013070:1786-1805 None:intergenic 45.0%
TGGCAGTAAGCCTTAAAACG+TGG - tig0013070:1787-1806 None:intergenic 45.0%
! GTGACTTGCAATAAGCTGTG+AGG - tig0013070:1816-1835 None:intergenic 45.0%
GCTTATTGCAAGTCACGACA+TGG + tig0013070:1820-1839 Msa1353040:intron 45.0%
TTTACCAAACAGAGCCGAAG+AGG + tig0013070:2296-2315 Msa1353040:intron 45.0%
AGAAGCTGTGTGTGTGTTTG+TGG - tig0013070:3343-3362 None:intergenic 45.0%
!! GCGCCATTATCGATTTCTTC+AGG + tig0013070:3417-3436 Msa1353040:intron 45.0%
CTTTGAACAGCAGCAAGCTT+AGG - tig0013070:3839-3858 None:intergenic 45.0%
!! CTAAGCTTGCTGCTGTTCAA+AGG + tig0013070:3837-3856 Msa1353040:CDS 45.0%
TAAGGTTCCTTCTGGTCACA+AGG - tig0013070:3871-3890 None:intergenic 45.0%
CGGTGAAATAAGGTTCCTTC+TGG - tig0013070:3879-3898 None:intergenic 45.0%
AGTGAGTTGTCTGTCCAAAC+AGG + tig0013070:4202-4221 Msa1353040:intron 45.0%
GTGAGTTGTCTGTCCAAACA+GGG + tig0013070:4203-4222 Msa1353040:intron 45.0%
GATACAAGTGGGACATACAG+AGG - tig0013070:4483-4502 None:intergenic 45.0%
CCTCTGTTATCACTGCACAA+AGG - tig0013070:4761-4780 None:intergenic 45.0%
CCTTTGTGCAGTGATAACAG+AGG + tig0013070:4758-4777 Msa1353040:intron 45.0%
TTGTGCAGTGATAACAGAGG+TGG + tig0013070:4761-4780 Msa1353040:intron 45.0%
TGTGCAGTGATAACAGAGGT+GGG + tig0013070:4762-4781 Msa1353040:intron 45.0%
TGATAACAGAGGTGGGGATT+TGG + tig0013070:4769-4788 Msa1353040:CDS 45.0%
!! TTTGGTTGCTGGCTTTCTTC+TGG + tig0013070:4787-4806 Msa1353040:CDS 45.0%
!! TTGGTTGCTGGCTTTCTTCT+GGG + tig0013070:4788-4807 Msa1353040:CDS 45.0%
!!! CTTCTGGGTGGTGCTATTTT+CGG + tig0013070:4803-4822 Msa1353040:CDS 45.0%
!!! TGGTGCTATTTTCGGAACTC+TGG + tig0013070:4811-4830 Msa1353040:CDS 45.0%
!! GGCTTATGTTTTTGCTCCTC+AGG + tig0013070:4832-4851 Msa1353040:CDS 45.0%
!!! TGCTGGTTGGGTGCATTTTT+TGG + tig0013070:5317-5336 Msa1353040:intron 45.0%
!!! GCTGGTTGGGTGCATTTTTT+GGG + tig0013070:5318-5337 Msa1353040:intron 45.0%
GGGGATGAATGAAGTATAGG+CGG - tig0013070:5358-5377 None:intergenic 45.0%
AACAAGAGAGGGTCCAAAGA+TGG - tig0013070:5798-5817 None:intergenic 45.0%
! AGAGGTAATTTGGCTTCCCT+TGG + tig0013070:6112-6131 Msa1353040:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0013070:6220-6239 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0013070:6221-6240 None:intergenic 45.0%
TTTCTGAATGCAGAGGACCA+GGG + tig0013070:6302-6321 Msa1353040:intron 45.0%
CTTATCATTCAAGGTCTCCC+TGG - tig0013070:6322-6341 None:intergenic 45.0%
!! GTGTTGGTGCTGGATTGATA+TGG + tig0013070:6536-6555 Msa1353040:three_prime_UTR 45.0%
!! ATAATAAAATTAAATTAACA+AGG - tig0013070:1734-1753 None:intergenic 5.0%
!! TAAAGATAAAAATTATAATA+TGG + tig0013070:3182-3201 Msa1353040:intron 5.0%
TCGAACCGACGTTACACAGT+AGG + tig0013070:1063-1082 Msa1353040:intron 50.0%
CGAACCGACGTTACACAGTA+GGG + tig0013070:1064-1083 Msa1353040:intron 50.0%
GGATCCCTACTGTGTAACGT+CGG - tig0013070:1071-1090 None:intergenic 50.0%
ACGTTACACAGTAGGGATCC+AGG + tig0013070:1071-1090 Msa1353040:intron 50.0%
ATCACCTCTTCGGCTCTGTT+TGG - tig0013070:2303-2322 None:intergenic 50.0%
GTTATCGGGCGAGTATTACG+AGG - tig0013070:3321-3340 None:intergenic 50.0%
CTGCACGAACCGGTGAAATA+AGG - tig0013070:3889-3908 None:intergenic 50.0%
TACCGTTGTTCTGCACGAAC+CGG - tig0013070:3899-3918 None:intergenic 50.0%
GAACAACGGTATGTCATCCG+TGG + tig0013070:3908-3927 Msa1353040:intron 50.0%
GTGCAGTGATAACAGAGGTG+GGG + tig0013070:4763-4782 Msa1353040:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0013070:6216-6235 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0013070:6222-6241 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0013070:6219-6238 Msa1353040:intron 50.0%
GTTTCTGAATGCAGAGGACC+AGG + tig0013070:6301-6320 Msa1353040:intron 50.0%
! CTTTCTAAAGGGGCAGCAGT+AGG - tig0013070:6408-6427 None:intergenic 50.0%
!! CGTTGACAAGAGTATCGAGC+TGG - tig0013070:6467-6486 None:intergenic 50.0%
ATCGGGCGAGTATTACGAGG+AGG - tig0013070:3318-3337 None:intergenic 55.0%
GGCGCGAATGAAGTTGCCAT+GGG - tig0013070:3402-3421 None:intergenic 55.0%
TGGCGCGAATGAAGTTGCCA+TGG - tig0013070:3403-3422 None:intergenic 55.0%
!! CACCGGTTCGTGCAGAACAA+CGG + tig0013070:3894-3913 Msa1353040:CDS 55.0%
! AGAGGTGGGGATTTGGTTGC+TGG + tig0013070:4776-4795 Msa1353040:CDS 55.0%
!! GTTGCTGGCTTTCTTCTGGG+TGG + tig0013070:4791-4810 Msa1353040:CDS 55.0%
TTAGAGAGTAGTGGCGCCTC+TGG + tig0013070:5290-5309 Msa1353040:intron 55.0%
TAGAGAGTAGTGGCGCCTCT+GGG + tig0013070:5291-5310 Msa1353040:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0013070:6208-6227 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0013070:6207-6226 Msa1353040:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0013070:6208-6227 Msa1353040:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0013070:6214-6233 Msa1353040:intron 55.0%
!! GCCTCTGGGCTGTGCTGGTT+GGG + tig0013070:5305-5324 Msa1353040:intron 65.0%
ACCCAACCAGCACAGCCCAG+AGG - tig0013070:5309-5328 None:intergenic 65.0%
! CGCCTCTGGGCTGTGCTGGT+TGG + tig0013070:5304-5323 Msa1353040:intron 70.0%
GTGGCGCCTCTGGGCTGTGC+TGG + tig0013070:5300-5319 Msa1353040:intron 75.0%
Chromosome Type Strat End Strand Name
tig0013070 gene 987 6960 987 ID=Msa1353040;Name=Msa1353040
tig0013070 mRNA 987 6960 987 ID=Msa1353040-mRNA-1;Parent=Msa1353040;Name=Msa1353040-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.6|0.66|0.66|1|1|6|508|174
tig0013070 exon 987 1001 987 ID=Msa1353040-mRNA-1:exon:8477;Parent=Msa1353040-mRNA-1
tig0013070 exon 1496 1553 1496 ID=Msa1353040-mRNA-1:exon:8478;Parent=Msa1353040-mRNA-1
tig0013070 exon 3771 3915 3771 ID=Msa1353040-mRNA-1:exon:8479;Parent=Msa1353040-mRNA-1
tig0013070 exon 4769 4853 4769 ID=Msa1353040-mRNA-1:exon:8480;Parent=Msa1353040-mRNA-1
tig0013070 exon 6032 6115 6032 ID=Msa1353040-mRNA-1:exon:8481;Parent=Msa1353040-mRNA-1
tig0013070 exon 6315 6960 6315 ID=Msa1353040-mRNA-1:exon:8482;Parent=Msa1353040-mRNA-1
tig0013070 CDS 987 1001 987 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 CDS 1496 1553 1496 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 CDS 3771 3915 3771 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 CDS 4769 4853 4769 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 CDS 6032 6115 6032 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 CDS 6315 6452 6315 ID=Msa1353040-mRNA-1:cds;Parent=Msa1353040-mRNA-1
tig0013070 three_prime_UTR 6453 6960 6453 ID=Msa1353040-mRNA-1:three_prime_utr;Parent=Msa1353040-mRNA-1
Gene Sequence

>Msa1353040

GTTCTTTTCGCTGAGAAGCAAATGGCAAATGGGCACATCTCCGCTTTGCACTTAATGATGAAGGCTGTGTTTGTTGGTGGATCTCATGTGAAGTCACCTGAGCTTTTTTCAACAAAGCGTAATTCATCTGTGTTTGGACCTAAGCTTGCTGCTGTTCAAAGGAAATCAAACCTTGTGACCAGAAGGAACCTTATTTCACCGGTTCGTGCAGAACAACGTGATAACAGAGGTGGGGATTTGGTTGCTGGCTTTCTTCTGGGTGGTGCTATTTTCGGAACTCTGGCTTATGTTTTTGCTCCTCAGATCAGAAAATCTCTGCTAAATGAAGATGAATATGGGTTTCGTAGGGCCAGAAGACCACCTTATTATTATGACAAAGGGCTAGAGAGGACCAGGGAGACCTTGAATGATAAGATAGGCCAACTAAATTCTGCCATTGATAATATATCTGTACGTCTGAGAGGTAACAAGAAAGTGCCTACTGCTGCCCCTTTAGAAAGTGATCCTGAATTTGAAGGCATTTGA

Protein sequence

>Msa1353040

VLFAEKQMANGHISALHLMMKAVFVGGSHVKSPELFSTKRNSSVFGPKLAAVQRKSNLVTRRNLISPVRAEQRDNRGGDLVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDKGLERTRETLNDKIGQLNSAIDNISVRLRGNKKVPTAAPLESDPEFEGI*