AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795850 MtrunA17_Chr5g0398861 95.238 252 8 2 1 249 1 251 3.02e-173 477
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795850 AT1G62780.1 61.355 251 81 3 1 249 1 237 6.80e-105 303

Find 69 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTTGATGTCAAGATTT+TGG 0.138015 5_3:-7880786 None:intergenic
TTTCCTTCAACTTAAATAAA+TGG 0.193641 5_3:+7879089 Msa0795850:exon
ATGAGGTCTTGTGGAGTATC+AGG 0.256254 5_3:-7879950 None:intergenic
GTCCTATTGGTCCTGTTGAT+TGG 0.268287 5_3:+7879217 Msa0795850:CDS
GGCCGGCCTAGTACACCTTC+TGG 0.301594 5_3:-7879326 None:intergenic
CAAACCTGTTCCTTCTTGTA+TGG 0.344252 5_3:-7880332 None:intergenic
TACTTTATTATCACCATCTC+TGG 0.344989 5_3:+7881371 Msa0795850:three_prime_UTR
TCCTATTGGTCCTGTTGATT+GGG 0.352061 5_3:+7879218 Msa0795850:CDS
AGAAGTTTGAATGCTACTTC+TGG 0.364092 5_3:+7879141 Msa0795850:CDS
TTGGCATTAAAATCCGAGTT+AGG 0.370670 5_3:+7880153 Msa0795850:CDS
TGTATTGGTCCAGGTCCTAT+TGG 0.371658 5_3:+7879204 Msa0795850:CDS
CCTAGCAAGGTGGCCAGTAT+TGG 0.381900 5_3:-7879348 None:intergenic
CTAGCAAGGTGGCCAGTATT+GGG 0.384134 5_3:-7879347 None:intergenic
TAGCCATTTATTTAAGTTGA+AGG 0.385215 5_3:-7879092 None:intergenic
CCAATACTGGCCACCTTGCT+AGG 0.385665 5_3:+7879348 Msa0795850:CDS
GAACCAAATTCTCAATTAAC+AGG 0.392105 5_3:-7881554 None:intergenic
TACGACTATGTATCTTTAGT+TGG 0.395397 5_3:+7881491 Msa0795850:three_prime_UTR
GACGACGTTCTTTCTCTTCA+CGG 0.402885 5_3:-7879433 None:intergenic
GTACTAGGCCGGCCCAATAC+TGG 0.406350 5_3:+7879335 Msa0795850:CDS
GCCGGCCTAGTACACCTTCT+GGG 0.410951 5_3:-7879325 None:intergenic
ACCACCTTGCTTGCTTGCTA+TGG 0.420173 5_3:-7879044 None:intergenic
CTGAGCTTGCATCTTATCAT+AGG 0.423174 5_3:-7880738 None:intergenic
AGTTAAGTTACCCAATCAAC+AGG 0.425418 5_3:-7879228 None:intergenic
TAAATGGCTACGCTTAACTT+TGG 0.446560 5_3:+7879105 Msa0795850:exon
AAATCCACTATTGTGTGTAT+TGG 0.451283 5_3:+7879189 Msa0795850:CDS
TTCAATACAGTTGCTGGAGT+TGG 0.464415 5_3:+7880906 Msa0795850:intron
ACCCAATCAACAGGACCAAT+AGG 0.472506 5_3:-7879219 None:intergenic
CTTACTTGACACTGAGGCTC+AGG 0.483234 5_3:+7879979 Msa0795850:CDS
TTCAATTGATATTACCTGGT+TGG 0.486634 5_3:-7880998 None:intergenic
TGGACCAATACACACAATAG+TGG 0.498779 5_3:-7879193 None:intergenic
TGTATCTTTAGTTGGAAAGC+TGG 0.504899 5_3:+7881499 Msa0795850:three_prime_UTR
GAAGCAAGCTGCAGAATACA+TGG 0.509642 5_3:+7881285 Msa0795850:intron
TAGGACCCAGAAGGTGTACT+AGG 0.511032 5_3:+7879320 Msa0795850:intron
AAGGCCATACAAGAAGGAAC+AGG 0.513579 5_3:+7880328 Msa0795850:CDS
TTCACGGACTTGACGCTCAA+AGG 0.514787 5_3:-7879417 None:intergenic
ACTATTGTGTGTATTGGTCC+AGG 0.514965 5_3:+7879195 Msa0795850:CDS
GGAGGATAGATTGACTGAGC+TGG 0.528319 5_3:+7880294 Msa0795850:CDS
AAGTGCACATGGTGCCAACC+AGG 0.543322 5_3:+7880984 Msa0795850:CDS
CAAGGTGGCCAGTATTGGGC+CGG 0.546539 5_3:-7879343 None:intergenic
AGCATTCAAACTTCTTGTTG+TGG 0.561221 5_3:-7879133 None:intergenic
ACCCAGAAGGTGTACTAGGC+CGG 0.561282 5_3:+7879324 Msa0795850:CDS
AACCAAAATCTTGACATCAA+AGG 0.566416 5_3:+7880784 Msa0795850:CDS
AAGTATTCAATGAGGTCTTG+TGG 0.566777 5_3:-7879959 None:intergenic
AAATCGAAGCTGTCCTAACT+CGG 0.569095 5_3:-7880166 None:intergenic
AATACATGGAGAAGCTCCGT+GGG 0.575310 5_3:+7881299 Msa0795850:CDS
AGCTCAGCTCATAAAAGCCA+AGG 0.578424 5_3:+7880754 Msa0795850:CDS
TGAGGTCTTGTGGAGTATCA+GGG 0.585430 5_3:-7879949 None:intergenic
GTAACCATAGCAAGCAAGCA+AGG 0.586146 5_3:+7879040 Msa0795850:five_prime_UTR
TTTCGAAACTTATGGAGCAG+AGG 0.602773 5_3:+7879165 Msa0795850:CDS
TCTTAAACTCAAGCCTAGCA+AGG 0.605985 5_3:-7879361 None:intergenic
TTAGAGAAGGCCATACAAGA+AGG 0.624872 5_3:+7880322 Msa0795850:CDS
AAGTAAACTTACATCACGAA+GGG 0.626470 5_3:-7879459 None:intergenic
TCAACAGGACCAATAGGACC+TGG 0.627773 5_3:-7879213 None:intergenic
AAAGTAAACTTACATCACGA+AGG 0.630395 5_3:-7879460 None:intergenic
ATGATTTCTGCAGCTTACGG+AGG 0.630425 5_3:+7880276 Msa0795850:intron
ATATTTGATACAATTATCGA+CGG 0.631236 5_3:-7881403 None:intergenic
TGAGCTGGAGGCTTTAGAGA+AGG 0.633356 5_3:+7880309 Msa0795850:CDS
ATTTGCTGTTAACAAAACGC+AGG 0.637369 5_3:+7880185 Msa0795850:CDS
GGATAGATTGACTGAGCTGG+AGG 0.664651 5_3:+7880297 Msa0795850:CDS
GAATACATGGAGAAGCTCCG+TGG 0.672335 5_3:+7881298 Msa0795850:CDS
AGATTGCAAGAATGAGACCA+CGG 0.675769 5_3:+7880014 Msa0795850:CDS
TGTCAAGTAAGTATTCAATG+AGG 0.689411 5_3:-7879967 None:intergenic
TGTATTTGAGAACAGCCCCA+CGG 0.699113 5_3:-7881315 None:intergenic
GAAAACATATCAAGTGCACA+TGG 0.703604 5_3:+7880973 Msa0795850:CDS
TAAACTCAAGCCTAGCAAGG+TGG 0.709876 5_3:-7879358 None:intergenic
TGAATACTTACTTGACACTG+AGG 0.714178 5_3:+7879973 Msa0795850:CDS
TGATTGATGTAGGACCCAGA+AGG 0.731704 5_3:+7879311 Msa0795850:intron
ACCATAGCAAGCAAGCAAGG+TGG 0.741666 5_3:+7879043 Msa0795850:five_prime_UTR
ATACATGGAGAAGCTCCGTG+GGG 0.765327 5_3:+7881300 Msa0795850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTTAGAGATTAAAT+TGG + chr5_3:7879791-7879810 Msa0795850:intron 10.0%
!!! TTGATATTTTAATAATTTGA+AGG + chr5_3:7880566-7880585 Msa0795850:intron 10.0%
!!! TTTTTTATAGTTGATATTAT+TGG + chr5_3:7880843-7880862 Msa0795850:intron 10.0%
!! TTTCCTTCAACTTAAATAAA+TGG + chr5_3:7879089-7879108 Msa0795850:exon 20.0%
!!! GATTAGAGTAATAATCATTT+TGG - chr5_3:7879709-7879728 None:intergenic 20.0%
!!! TAGCCTTTATTATTTTATGA+CGG + chr5_3:7879879-7879898 Msa0795850:intron 20.0%
!! ACTAAGCAAATGAAAAATAA+CGG - chr5_3:7879919-7879938 None:intergenic 20.0%
!! CACTAGAATAATTTATTCAA+TGG - chr5_3:7880237-7880256 None:intergenic 20.0%
!! TACAATTTCATGAACTAAAT+TGG - chr5_3:7880387-7880406 None:intergenic 20.0%
!!! AATTTAGTTCATGAAATTGT+AGG + chr5_3:7880386-7880405 Msa0795850:intron 20.0%
!!! ATTTAGTTCATGAAATTGTA+GGG + chr5_3:7880387-7880406 Msa0795850:intron 20.0%
!!! GTGAAATTTTGTTAATTTCA+AGG - chr5_3:7880428-7880447 None:intergenic 20.0%
!!! AACTTTTATGTTTCTAGTTT+CGG - chr5_3:7881152-7881171 None:intergenic 20.0%
!! ATATTTGATACAATTATCGA+CGG - chr5_3:7881406-7881425 None:intergenic 20.0%
!!! TAGCCATTTATTTAAGTTGA+AGG - chr5_3:7879095-7879114 None:intergenic 25.0%
! TTTGATTGATTGATTGATGT+AGG + chr5_3:7879301-7879320 Msa0795850:intron 25.0%
!! GTGTGTTTTCTTAGTAATTT+TGG + chr5_3:7879562-7879581 Msa0795850:intron 25.0%
! TTTGATACTTTCAAAGACTA+TGG + chr5_3:7879658-7879677 Msa0795850:intron 25.0%
! ATTTAGAGATTAAATTGGAG+AGG + chr5_3:7879796-7879815 Msa0795850:intron 25.0%
! TTTAGAGATTAAATTGGAGA+GGG + chr5_3:7879797-7879816 Msa0795850:intron 25.0%
! GAACCGTCATAAAATAATAA+AGG - chr5_3:7879885-7879904 None:intergenic 25.0%
!! ATTAAACGACGAATTCTTTT+TGG + chr5_3:7880134-7880153 Msa0795850:CDS 25.0%
! GAATAAATTATTCTAGTGTC+TGG + chr5_3:7880239-7880258 Msa0795850:intron 25.0%
! CAGAAATCATCATTGTAAAA+AGG - chr5_3:7880266-7880285 None:intergenic 25.0%
!!! GTTATTTTCAGACTATTTCA+CGG + chr5_3:7880484-7880503 Msa0795850:intron 25.0%
! TTAAAATATCAAAACAGTCC+TGG - chr5_3:7880558-7880577 None:intergenic 25.0%
!!! TTTATTTTCAATACAGTTGC+TGG + chr5_3:7880900-7880919 Msa0795850:intron 25.0%
! ATCATTCAATTGATATTACC+TGG - chr5_3:7881005-7881024 None:intergenic 25.0%
! AATGAGTTAAAGATTATAGC+TGG - chr5_3:7881096-7881115 None:intergenic 25.0%
! CATGTTCAGTAAATTAAATC+TGG - chr5_3:7881183-7881202 None:intergenic 25.0%
!! CAGATTTAATTTACTGAACA+TGG + chr5_3:7881181-7881200 Msa0795850:intron 25.0%
AAATCCACTATTGTGTGTAT+TGG + chr5_3:7879189-7879208 Msa0795850:CDS 30.0%
AAGTAAACTTACATCACGAA+GGG - chr5_3:7879462-7879481 None:intergenic 30.0%
AAAGTAAACTTACATCACGA+AGG - chr5_3:7879463-7879482 None:intergenic 30.0%
! TTTTGGTCTCTAAATATTCG+AGG - chr5_3:7879692-7879711 None:intergenic 30.0%
!!! GAAAACTTGTCATTTTAGCA+TGG - chr5_3:7879771-7879790 None:intergenic 30.0%
TGTCAAGTAAGTATTCAATG+AGG - chr5_3:7879970-7879989 None:intergenic 30.0%
CAAAATTTCACAATGATCTC+CGG + chr5_3:7880437-7880456 Msa0795850:intron 30.0%
! TGATTGAGAATTTTCGAATC+CGG - chr5_3:7880459-7880478 None:intergenic 30.0%
! ATCAGTGATTTTCAATATCC+AGG + chr5_3:7880537-7880556 Msa0795850:intron 30.0%
AATTGATCAAATCGCCAATT+TGG - chr5_3:7880624-7880643 None:intergenic 30.0%
AAATTGGCGATTTGATCAAT+TGG + chr5_3:7880623-7880642 Msa0795850:intron 30.0%
!!! TTGATGTCAAGATTTTGGTT+AGG - chr5_3:7880784-7880803 None:intergenic 30.0%
AACCAAAATCTTGACATCAA+AGG + chr5_3:7880784-7880803 Msa0795850:CDS 30.0%
! ATCCTTTGATGTCAAGATTT+TGG - chr5_3:7880789-7880808 None:intergenic 30.0%
! ACTTCTGTTCTAGTTAAACT+AGG + chr5_3:7880872-7880891 Msa0795850:intron 30.0%
! TGATATGTTTTCATCGAGAA+GGG - chr5_3:7880965-7880984 None:intergenic 30.0%
! TTGATATGTTTTCATCGAGA+AGG - chr5_3:7880966-7880985 None:intergenic 30.0%
TTCAATTGATATTACCTGGT+TGG - chr5_3:7881001-7881020 None:intergenic 30.0%
!!! GGAATTGTCAATTTTGAAAC+AGG + chr5_3:7881054-7881073 Msa0795850:intron 30.0%
TTTGAACATAACAGAACTTG+TGG + chr5_3:7881210-7881229 Msa0795850:intron 30.0%
TACTTTATTATCACCATCTC+TGG + chr5_3:7881371-7881390 Msa0795850:three_prime_UTR 30.0%
TACGACTATGTATCTTTAGT+TGG + chr5_3:7881491-7881510 Msa0795850:three_prime_UTR 30.0%
TAAATGGCTACGCTTAACTT+TGG + chr5_3:7879105-7879124 Msa0795850:exon 35.0%
AGCATTCAAACTTCTTGTTG+TGG - chr5_3:7879136-7879155 None:intergenic 35.0%
! AGAAGTTTGAATGCTACTTC+TGG + chr5_3:7879141-7879160 Msa0795850:CDS 35.0%
!!! CTTCTGGTTTTCGAAACTTA+TGG + chr5_3:7879157-7879176 Msa0795850:CDS 35.0%
AGTTAAGTTACCCAATCAAC+AGG - chr5_3:7879231-7879250 None:intergenic 35.0%
!!! AACTTGTCATTTTAGCATGG+TGG - chr5_3:7879768-7879787 None:intergenic 35.0%
AAGTATTCAATGAGGTCTTG+TGG - chr5_3:7879962-7879981 None:intergenic 35.0%
TGAATACTTACTTGACACTG+AGG + chr5_3:7879973-7879992 Msa0795850:CDS 35.0%
TTGGCATTAAAATCCGAGTT+AGG + chr5_3:7880153-7880172 Msa0795850:CDS 35.0%
!! ATTTGCTGTTAACAAAACGC+AGG + chr5_3:7880185-7880204 Msa0795850:CDS 35.0%
! AGGTATCTGACTCTTTTTGT+TGG + chr5_3:7880205-7880224 Msa0795850:intron 35.0%
ATGATGATTTCTGCAGCTTA+CGG + chr5_3:7880273-7880292 Msa0795850:intron 35.0%
AAGGAACAGGTTTGTGAAAA+TGG + chr5_3:7880341-7880360 Msa0795850:intron 35.0%
AATTGGCGATTCACTCTATT+CGG - chr5_3:7880370-7880389 None:intergenic 35.0%
ATTTGGTCCTTGAAATGGTA+TGG - chr5_3:7880607-7880626 None:intergenic 35.0%
TACCATTTCAAGGACCAAAT+TGG + chr5_3:7880607-7880626 Msa0795850:intron 35.0%
!!! GATTTTGGTTAGGTTTTCCT+TGG - chr5_3:7880774-7880793 None:intergenic 35.0%
GAAAACATATCAAGTGCACA+TGG + chr5_3:7880973-7880992 Msa0795850:CDS 35.0%
AGATTATAGCTGGATGATAC+TGG - chr5_3:7881086-7881105 None:intergenic 35.0%
TGTATCTTTAGTTGGAAAGC+TGG + chr5_3:7881499-7881518 Msa0795850:three_prime_UTR 35.0%
TTTCGAAACTTATGGAGCAG+AGG + chr5_3:7879165-7879184 Msa0795850:CDS 40.0%
TGGACCAATACACACAATAG+TGG - chr5_3:7879196-7879215 None:intergenic 40.0%
! ACTATTGTGTGTATTGGTCC+AGG + chr5_3:7879195-7879214 Msa0795850:CDS 40.0%
! TCCTATTGGTCCTGTTGATT+GGG + chr5_3:7879218-7879237 Msa0795850:CDS 40.0%
TCTTAAACTCAAGCCTAGCA+AGG - chr5_3:7879364-7879383 None:intergenic 40.0%
AGATTGCAAGAATGAGACCA+CGG + chr5_3:7880014-7880033 Msa0795850:CDS 40.0%
!! TTGAAAAGTACTACGAACCG+TGG - chr5_3:7880034-7880053 None:intergenic 40.0%
AAATCGAAGCTGTCCTAACT+CGG - chr5_3:7880169-7880188 None:intergenic 40.0%
TTAGAGAAGGCCATACAAGA+AGG + chr5_3:7880322-7880341 Msa0795850:CDS 40.0%
CAAACCTGTTCCTTCTTGTA+TGG - chr5_3:7880335-7880354 None:intergenic 40.0%
TTCATGAAATTGTAGGGTGC+TGG + chr5_3:7880393-7880412 Msa0795850:intron 40.0%
ATGCAAACTTACTCCTTGCT+CGG + chr5_3:7880690-7880709 Msa0795850:intron 40.0%
AGGCATCTGCATAAGCAAAT+GGG - chr5_3:7880721-7880740 None:intergenic 40.0%
TAGGCATCTGCATAAGCAAA+TGG - chr5_3:7880722-7880741 None:intergenic 40.0%
CTGAGCTTGCATCTTATCAT+AGG - chr5_3:7880741-7880760 None:intergenic 40.0%
TTCAATACAGTTGCTGGAGT+TGG + chr5_3:7880906-7880925 Msa0795850:intron 40.0%
TGATTACCAGAATCTGTGTG+TGG + chr5_3:7881033-7881052 Msa0795850:intron 40.0%
ACAATTCCACACACAGATTC+TGG - chr5_3:7881042-7881061 None:intergenic 40.0%
!! AACATGCTGTGCTCTAAGAA+GGG - chr5_3:7881120-7881139 None:intergenic 40.0%
!! AAACATGCTGTGCTCTAAGA+AGG - chr5_3:7881121-7881140 None:intergenic 40.0%
GTAACCATAGCAAGCAAGCA+AGG + chr5_3:7879040-7879059 Msa0795850:five_prime_UTR 45.0%
! TGTATTGGTCCAGGTCCTAT+TGG + chr5_3:7879204-7879223 Msa0795850:CDS 45.0%
GTCCTATTGGTCCTGTTGAT+TGG + chr5_3:7879217-7879236 Msa0795850:CDS 45.0%
ACCCAATCAACAGGACCAAT+AGG - chr5_3:7879222-7879241 None:intergenic 45.0%
TGATTGATGTAGGACCCAGA+AGG + chr5_3:7879311-7879330 Msa0795850:intron 45.0%
TAAACTCAAGCCTAGCAAGG+TGG - chr5_3:7879361-7879380 None:intergenic 45.0%
GACGACGTTCTTTCTCTTCA+CGG - chr5_3:7879436-7879455 None:intergenic 45.0%
! TGAGGTCTTGTGGAGTATCA+GGG - chr5_3:7879952-7879971 None:intergenic 45.0%
! ATGAGGTCTTGTGGAGTATC+AGG - chr5_3:7879953-7879972 None:intergenic 45.0%
ATGATTTCTGCAGCTTACGG+AGG + chr5_3:7880276-7880295 Msa0795850:intron 45.0%
AAGGCCATACAAGAAGGAAC+AGG + chr5_3:7880328-7880347 Msa0795850:CDS 45.0%
GTCGACACCATACCATTTCA+AGG + chr5_3:7880597-7880616 Msa0795850:intron 45.0%
CGCCAATTTGGTCCTTGAAA+TGG - chr5_3:7880612-7880631 None:intergenic 45.0%
AGCTCAGCTCATAAAAGCCA+AGG + chr5_3:7880754-7880773 Msa0795850:CDS 45.0%
GAAGCAAGCTGCAGAATACA+TGG + chr5_3:7881285-7881304 Msa0795850:intron 45.0%
AATACATGGAGAAGCTCCGT+GGG + chr5_3:7881299-7881318 Msa0795850:CDS 45.0%
TGTATTTGAGAACAGCCCCA+CGG - chr5_3:7881318-7881337 None:intergenic 45.0%
! ACGGCACAATTTTCCAGAGA+TGG - chr5_3:7881387-7881406 None:intergenic 45.0%
ACCATAGCAAGCAAGCAAGG+TGG + chr5_3:7879043-7879062 Msa0795850:five_prime_UTR 50.0%
! ACCACCTTGCTTGCTTGCTA+TGG - chr5_3:7879047-7879066 None:intergenic 50.0%
TCAACAGGACCAATAGGACC+TGG - chr5_3:7879216-7879235 None:intergenic 50.0%
! TAGGACCCAGAAGGTGTACT+AGG + chr5_3:7879320-7879339 Msa0795850:intron 50.0%
CTAGCAAGGTGGCCAGTATT+GGG - chr5_3:7879350-7879369 None:intergenic 50.0%
TTCACGGACTTGACGCTCAA+AGG - chr5_3:7879420-7879439 None:intergenic 50.0%
! TTGGAGAGGGCGTGAAACTT+TGG + chr5_3:7879810-7879829 Msa0795850:intron 50.0%
CTTACTTGACACTGAGGCTC+AGG + chr5_3:7879979-7879998 Msa0795850:CDS 50.0%
GGAGGATAGATTGACTGAGC+TGG + chr5_3:7880294-7880313 Msa0795850:CDS 50.0%
GGATAGATTGACTGAGCTGG+AGG + chr5_3:7880297-7880316 Msa0795850:CDS 50.0%
!! TGAGCTGGAGGCTTTAGAGA+AGG + chr5_3:7880309-7880328 Msa0795850:CDS 50.0%
! TGCAGCTTGCTTCTGCAACA+AGG - chr5_3:7881278-7881297 None:intergenic 50.0%
GAATACATGGAGAAGCTCCG+TGG + chr5_3:7881298-7881317 Msa0795850:CDS 50.0%
ATACATGGAGAAGCTCCGTG+GGG + chr5_3:7881300-7881319 Msa0795850:CDS 50.0%
! ACCCAGAAGGTGTACTAGGC+CGG + chr5_3:7879324-7879343 Msa0795850:CDS 55.0%
CCTAGCAAGGTGGCCAGTAT+TGG - chr5_3:7879351-7879370 None:intergenic 55.0%
CCAATACTGGCCACCTTGCT+AGG + chr5_3:7879348-7879367 Msa0795850:CDS 55.0%
CAAATGGGAGCAACCGAGCA+AGG - chr5_3:7880706-7880725 None:intergenic 55.0%
! AAGTGCACATGGTGCCAACC+AGG + chr5_3:7880984-7881003 Msa0795850:CDS 55.0%
GCCGGCCTAGTACACCTTCT+GGG - chr5_3:7879328-7879347 None:intergenic 60.0%
GTACTAGGCCGGCCCAATAC+TGG + chr5_3:7879335-7879354 Msa0795850:CDS 60.0%
! CAAGGTGGCCAGTATTGGGC+CGG - chr5_3:7879346-7879365 None:intergenic 60.0%
GGCCGGCCTAGTACACCTTC+TGG - chr5_3:7879329-7879348 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7879028 7881568 7879028 ID=Msa0795850;Name=Msa0795850
chr5_3 mRNA 7879028 7881568 7879028 ID=Msa0795850-mRNA-1;Parent=Msa0795850;Name=Msa0795850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=80|1|1|1|1|1|8|220|249
chr5_3 exon 7879028 7879239 7879028 ID=Msa0795850-mRNA-1:exon:3231;Parent=Msa0795850-mRNA-1
chr5_3 exon 7879323 7879469 7879323 ID=Msa0795850-mRNA-1:exon:3232;Parent=Msa0795850-mRNA-1
chr5_3 exon 7879938 7880035 7879938 ID=Msa0795850-mRNA-1:exon:3233;Parent=Msa0795850-mRNA-1
chr5_3 exon 7880134 7880206 7880134 ID=Msa0795850-mRNA-1:exon:3234;Parent=Msa0795850-mRNA-1
chr5_3 exon 7880289 7880349 7880289 ID=Msa0795850-mRNA-1:exon:3235;Parent=Msa0795850-mRNA-1
chr5_3 exon 7880735 7880820 7880735 ID=Msa0795850-mRNA-1:exon:3236;Parent=Msa0795850-mRNA-1
chr5_3 exon 7880916 7881005 7880916 ID=Msa0795850-mRNA-1:exon:3237;Parent=Msa0795850-mRNA-1
chr5_3 exon 7881286 7881568 7881286 ID=Msa0795850-mRNA-1:exon:3238;Parent=Msa0795850-mRNA-1
chr5_3 five_prime_UTR 7879028 7879107 7879028 ID=Msa0795850-mRNA-1:five_prime_utr;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7879108 7879239 7879108 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7879323 7879469 7879323 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7879938 7880035 7879938 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7880134 7880206 7880134 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7880289 7880349 7880289 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7880735 7880820 7880735 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7880916 7881005 7880916 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 CDS 7881286 7881348 7881286 ID=Msa0795850-mRNA-1:cds;Parent=Msa0795850-mRNA-1
chr5_3 three_prime_UTR 7881349 7881568 7881349 ID=Msa0795850-mRNA-1:three_prime_utr;Parent=Msa0795850-mRNA-1
Gene Sequence

>Msa0795850

ATGGCTACGCTTAACTTTGGCATAGCCACAACAAGAAGTTTGAATGCTACTTCTGGTTTTCGAAACTTATGGAGCAGAGGCAAATCCACTATTGTGTGTATTGGTCCAGGTCCTATTGGTCCTGTTGATTGGGACCCAGAAGGTGTACTAGGCCGGCCCAATACTGGCCACCTTGCTAGGCTTGAGTTTAAGAGACGTCTTGAGAAAGATTCTGAAGCTCGAGAAGCCTTTGAGCGTCAAGTCCGTGAAGAGAAAGAACGTCGTCGAGCCCTTCGTGATTCTCGTGATGTCCCTGATACTCCACAAGACCTCATTGAATACTTACTTGACACTGAGGCTCAGGAGATTGAATTTGAGATTGCAAGAATGAGACCACGATTAAACGACGAATTCTTTTTGGCATTAAAATCCGAGTTAGGACAGCTTCGATTTGCTGTTAACAAAACGCAGCTTACGGAGGATAGATTGACTGAGCTGGAGGCTTTAGAGAAGGCCATACAAGAAGGAACAGATGCCTATGATAAGATGCAAGCTCAGCTCATAAAAGCCAAGGAAAACCTAACCAAAATCTTGACATCAAAGGATGTCAAAGCAACTTTGCTGGAGTTGGTTGAGCGCAACGAGATTAATCGATCATTGTTGACCCTTCTCGATGAAAACATATCAAGTGCACATGGTGCCAACCAGAAGCAAGCTGCAGAATACATGGAGAAGCTCCGTGGGGCTGTTCTCAAATACATTACAGTTTAG

Protein sequence

>Msa0795850

MATLNFGIATTRSLNATSGFRNLWSRGKSTIVCIGPGPIGPVDWDPEGVLGRPNTGHLARLEFKRRLEKDSEAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEFEIARMRPRLNDEFFLALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTDAYDKMQAQLIKAKENLTKILTSKDVKATLLELVERNEINRSLLTLLDENISSAHGANQKQAAEYMEKLRGAVLKYITV*