AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684030 MtrunA17_Chr4g0031291 97.978 445 8 1 1 445 1 444 0.0 887
Msa0684030 MtrunA17_Chr3g0123281 51.923 416 163 4 1 381 1 414 9.04e-139 408
Msa0684030 MtrunA17_Chr4g0047781 26.761 284 151 13 71 340 102 342 3.60e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684030 AT2G28800.1 78.495 372 75 3 24 391 40 410 0.0 604
Msa0684030 AT2G28800.4 70.699 372 74 4 24 391 40 380 0.0 528
Msa0684030 AT2G28800.2 81.188 303 52 3 24 322 40 341 1.10e-180 508
Msa0684030 AT2G28800.3 81.188 303 52 3 24 322 40 341 2.09e-180 507
Msa0684030 AT1G24490.1 57.662 385 125 5 60 413 61 438 2.09e-145 424
Msa0684030 AT1G24490.2 49.351 385 120 6 60 413 61 401 1.29e-113 342

Find 137 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTACTCAGATATTAA+AGG 0.240430 4_4:-47151766 Msa0684030:intron
CAAATATGGTTGCGCAAATT+AGG 0.245631 4_4:-47148597 Msa0684030:CDS
AGGATTGAATTGGTGGAATT+TGG 0.254625 4_4:+47152701 None:intergenic
TCAACGGTGTGTAACACTTT+TGG 0.261901 4_4:-47147363 Msa0684030:three_prime_UTR
CATCAGGACTAACAATTTAC+TGG 0.275942 4_4:-47149101 Msa0684030:intron
TCGGCTTCTGTTTCCGATGA+TGG 0.311599 4_4:-47148322 Msa0684030:CDS
GCAGGATGGCCATCCACCTT+TGG 0.313210 4_4:-47149371 Msa0684030:intron
AGAAAGCAGGTGTCTGTTAA+AGG 0.315089 4_4:+47147473 None:intergenic
TGCCATGGAGTTTGTTCTTA+AGG 0.317066 4_4:-47152524 Msa0684030:intron
TGTTAACAGAAGGTTTCTTA+TGG 0.318050 4_4:-47150846 Msa0684030:CDS
AAACCTTCAACCTAAAATTA+AGG 0.326230 4_4:-47151411 Msa0684030:CDS
ATAGCAAATCCATACGAATA+AGG 0.348748 4_4:+47151720 None:intergenic
ACTCATTCTATTGATGTTGC+CGG 0.355928 4_4:-47152676 Msa0684030:CDS
TTGAACCTCTTGGGGAACTT+TGG 0.369203 4_4:+47147709 None:intergenic
ATTGCTCACTCTTATTGTTA+AGG 0.371624 4_4:-47151694 Msa0684030:CDS
TCATACTATCGTTGTTCAAC+AGG 0.374154 4_4:+47147435 None:intergenic
AACACCCCTCACCTGATTGC+CGG 0.380738 4_4:+47151370 None:intergenic
CAGGATGGCCATCCACCTTT+GGG 0.383616 4_4:-47149370 Msa0684030:CDS
TATATAGTCTGGTACGGTTA+GGG 0.385089 4_4:+47152746 None:intergenic
GTATATAGTCTGGTACGGTT+AGG 0.386944 4_4:+47152745 None:intergenic
GTAGAGACAAGTGCACGATA+TGG 0.390449 4_4:+47152948 None:intergenic
TGAGAAAGAATAAGAAGAAC+AGG 0.394821 4_4:+47149316 None:intergenic
TGAGCACAGCTCAACAAATA+TGG 0.403268 4_4:-47148611 Msa0684030:CDS
CAGAAGAACGGAGGTTGGTT+TGG 0.403635 4_4:-47152559 Msa0684030:CDS
GAATGAGTTAAGGATTGAAT+TGG 0.407264 4_4:+47152691 None:intergenic
GAATACAACTTGAGACTTCA+AGG 0.408158 4_4:-47151230 Msa0684030:CDS
CTTTCTTCAGCTTCTCGTTA+CGG 0.410841 4_4:+47152873 None:intergenic
CCAAGCTGGGGTTAACCCTT+TGG 0.412436 4_4:-47151199 Msa0684030:CDS
AAAGTGGATCCGGAATTTCT+TGG 0.421708 4_4:-47150783 Msa0684030:CDS
TCTTTCTCAATATGTTTCAA+TGG 0.427391 4_4:-47149302 Msa0684030:CDS
TTCTGTTTCCGATGATGGCT+CGG 0.429591 4_4:-47148317 Msa0684030:CDS
GCTACTATTCCCGTCTGGAT+TGG 0.430547 4_4:-47151004 Msa0684030:CDS
ACTTCCTTTGACAAAGCAAC+AGG 0.431867 4_4:-47151664 Msa0684030:intron
TGAAGTTCAACCTCTGGCTT+CGG 0.432777 4_4:-47148341 Msa0684030:CDS
AAAGGATAACTTACCACAAA+TGG 0.435903 4_4:+47150754 None:intergenic
TATAGGTTGTTTACCGACTT+TGG 0.435935 4_4:-47151026 Msa0684030:intron
GCCGGCATATCTTTCTTGAA+TGG 0.437024 4_4:+47151388 None:intergenic
AAGCTGAGAGAGAGGCTTCA+AGG 0.440562 4_4:+47152850 None:intergenic
CTCTCTCAGCTTCTCATCCA+TGG 0.444610 4_4:-47152839 Msa0684030:exon
AGAAAGATATGCCGGCAATC+AGG 0.452072 4_4:-47151381 Msa0684030:intron
TCAAGGCTATATACCCAAGC+TGG 0.459348 4_4:-47151213 Msa0684030:CDS
TTTGGATGCATACGCCTCTT+CGG 0.461858 4_4:+47147727 None:intergenic
GTGAACTTTGGTATATAGTC+TGG 0.466563 4_4:+47152735 None:intergenic
AACATCAATAGAATGAGTTA+AGG 0.469067 4_4:+47152681 None:intergenic
TTCTTATGGATCCCTTCTCT+CGG 0.470607 4_4:-47150832 Msa0684030:CDS
CTTTGGCTACTATTCCCGTC+TGG 0.472299 4_4:-47151009 Msa0684030:CDS
ATATTTGTTGAGCTGTGCTC+AGG 0.473781 4_4:+47148613 None:intergenic
CGTGGATGAAGTTCAACCTC+TGG 0.479313 4_4:-47148347 Msa0684030:CDS
CACAGCAACATCCGTGGAAG+TGG 0.479567 4_4:+47152582 None:intergenic
TTTATCTAATGTGGCAAATG+AGG 0.481648 4_4:-47150969 Msa0684030:intron
AGATGCTGGTGGAATTATTA+CGG 0.488262 4_4:-47148550 Msa0684030:CDS
TAGAGACAAGTGCACGATAT+GGG 0.490311 4_4:+47152949 None:intergenic
AAGTTGTTGCGGTGAAGTGA+AGG 0.492325 4_4:+47152772 None:intergenic
GTGGTCCGTTATCATACAAC+AGG 0.494705 4_4:+47147644 None:intergenic
TGAGTTAAGGATTGAATTGG+TGG 0.495040 4_4:+47152694 None:intergenic
GGTGTCTTCGCCAGAGCTGA+AGG 0.495688 4_4:-47152655 Msa0684030:CDS
TTCTCACTATCTGTGCCATC+AGG 0.496768 4_4:-47149117 Msa0684030:CDS
TTGCCACATTAGATAAAGCT+TGG 0.497398 4_4:+47150975 None:intergenic
ATGGCCATCCACCTTTGGGT+TGG 0.506568 4_4:-47149366 Msa0684030:CDS
CAAAGGGTTAACCCCAGCTT+GGG 0.507179 4_4:+47151200 None:intergenic
CCTCGCAAACAAAATGCATT+CGG 0.507668 4_4:-47152926 Msa0684030:five_prime_UTR
ATTGAATTGGTGGAATTTGG+TGG 0.511544 4_4:+47152704 None:intergenic
ATAAAGAAGTCCTTCAGCTC+TGG 0.512310 4_4:+47152645 None:intergenic
AGTAACTGCATCGGCGGTAA+CGG 0.517484 4_4:+47152606 None:intergenic
GCTGCTAGACAAAGTGGATC+CGG 0.517710 4_4:-47150793 Msa0684030:CDS
CAGTAAATTGTTAGTCCTGA+TGG 0.520024 4_4:+47149102 None:intergenic
TGGTTTCATCTCCGATGCCA+TGG 0.520375 4_4:-47152539 Msa0684030:CDS
TGCAGTTACTTCCACTTCCA+CGG 0.521286 4_4:-47152593 Msa0684030:CDS
CTAACCTGTTGCTTTGTCAA+AGG 0.522023 4_4:+47151660 None:intergenic
GCTGGGGTTAACCCTTTGGC+AGG 0.522528 4_4:-47151195 Msa0684030:intron
AAGTTTCTTCCACTCATGAT+CGG 0.524406 4_4:-47149144 Msa0684030:CDS
CCAAAGGGTTAACCCCAGCT+TGG 0.524993 4_4:+47151199 None:intergenic
GTGGAAACTGAAGTGAACTT+TGG 0.525784 4_4:+47152723 None:intergenic
GCCATTCAAGAAAGATATGC+CGG 0.529950 4_4:-47151389 Msa0684030:CDS
AATTTACATTTGCTAACATG+TGG 0.530000 4_4:+47147498 None:intergenic
ATTTCATCTCCATCCTTCAT+CGG 0.530601 4_4:-47152805 Msa0684030:CDS
GTGCATGTGCCTTATTCGTA+TGG 0.532237 4_4:-47151729 Msa0684030:CDS
TTGCGGTGAAGTGAAGGAAG+TGG 0.533549 4_4:+47152778 None:intergenic
CAAGTGCACGATATGGGTAG+TGG 0.534392 4_4:+47152955 None:intergenic
CCAGCATCTTCATTAACAGC+AGG 0.540975 4_4:+47148564 None:intergenic
ATATAACTGTACCTGCCAAA+GGG 0.541020 4_4:+47151184 None:intergenic
GAAAGCCTGTTGTATGATAA+CGG 0.548195 4_4:-47147649 Msa0684030:exon
AGTGGAGTTCCGATGAAGGA+TGG 0.552255 4_4:+47152796 None:intergenic
TTGAAGGGACTGTTAACAGA+AGG 0.553996 4_4:-47150856 Msa0684030:intron
AGCATTGCTGCTAGACAAAG+TGG 0.554199 4_4:-47150799 Msa0684030:CDS
AGGAAGTGGAGTTCCGATGA+AGG 0.554731 4_4:+47152792 None:intergenic
CTTTGGTATATAGTCTGGTA+CGG 0.556415 4_4:+47152740 None:intergenic
CAAGGCTATATACCCAAGCT+GGG 0.556897 4_4:-47151212 Msa0684030:CDS
ATACCAAGCTTTATCTAATG+TGG 0.557798 4_4:-47150978 Msa0684030:CDS
ATCGGCGGTAACGGCAGCGT+CGG 0.560478 4_4:+47152615 None:intergenic
CTAGTGGGACCACCGAGAGA+AGG 0.560903 4_4:+47150820 None:intergenic
GAGAAGTAGCCGATCATGAG+TGG 0.561223 4_4:+47149135 None:intergenic
CTGTGCAGAAGAACGGAGGT+TGG 0.565225 4_4:-47152564 Msa0684030:CDS
TGGATGAGAAGCTGAGAGAG+AGG 0.566336 4_4:+47152842 None:intergenic
GATATAACTGTACCTGCCAA+AGG 0.566849 4_4:+47151183 None:intergenic
TAGTGGGACCACCGAGAGAA+GGG 0.572027 4_4:+47150821 None:intergenic
AGAGGTTGAACTTCATCCAC+GGG 0.577767 4_4:+47148349 None:intergenic
GTTTACGCAGTTAAAAGAAG+AGG 0.578308 4_4:-47148401 Msa0684030:CDS
GCTGGTGGAATTATTACGGC+AGG 0.578347 4_4:-47148546 Msa0684030:CDS
CCTGCTGTTAATGAAGATGC+TGG 0.581288 4_4:-47148564 Msa0684030:CDS
GTTACTCAGATATTAAAGGA+TGG 0.583255 4_4:-47151762 Msa0684030:intron
TTATGGATCCCTTCTCTCGG+TGG 0.585688 4_4:-47150829 Msa0684030:CDS
GATGTTGCTGTGCAGAAGAA+CGG 0.586401 4_4:-47152571 Msa0684030:CDS
CCTGACATGCTTACCTGAGG+TGG 0.590658 4_4:+47149268 None:intergenic
GGAAATCATGAAACCACCTC+AGG 0.590966 4_4:-47149281 Msa0684030:intron
AAGAACAAACTCCATGGCAT+CGG 0.591393 4_4:+47152528 None:intergenic
CATGCCAACCCAAAGGTGGA+TGG 0.591741 4_4:+47149362 None:intergenic
TGTCTAGCAGCAATGCTAGT+GGG 0.599990 4_4:+47150805 None:intergenic
TTCAGCTCTGGCGAAGACAC+CGG 0.603711 4_4:+47152657 None:intergenic
CAGAGGTTGAACTTCATCCA+CGG 0.606136 4_4:+47148348 None:intergenic
ATATGGTTGCGCAAATTAGG+AGG 0.606383 4_4:-47148594 Msa0684030:CDS
TGAAATCAGTGTCTTCGCCA+TGG 0.606830 4_4:+47152822 None:intergenic
TGGTATAGACCAATCCAGAC+GGG 0.615542 4_4:+47150995 None:intergenic
TTGTCTAGCAGCAATGCTAG+TGG 0.618690 4_4:+47150804 None:intergenic
AGCCCGAAAAGGATGGTGAA+AGG 0.621319 4_4:-47148500 Msa0684030:intron
GTTAAGCAAGGCACTGCCCG+TGG 0.622439 4_4:-47148365 Msa0684030:CDS
TACCTTAAGAACAAACTCCA+TGG 0.622891 4_4:+47152522 None:intergenic
GGAAGTGGAAGTAACTGCAT+CGG 0.637850 4_4:+47152597 None:intergenic
AAACTACAAACAATTGTGTG+TGG 0.640301 4_4:+47147625 None:intergenic
GCTGTTAATGAAGATGCTGG+TGG 0.645878 4_4:-47148561 Msa0684030:CDS
TGCATCCAAAGTTCCCCAAG+AGG 0.646535 4_4:-47147714 Msa0684030:CDS
TTGGTATAGACCAATCCAGA+CGG 0.649063 4_4:+47150994 None:intergenic
ATATAGTCTGGTACGGTTAG+GGG 0.652620 4_4:+47152747 None:intergenic
GTGTCATGCCAACCCAAAGG+TGG 0.654970 4_4:+47149358 None:intergenic
CGTTACGGAATAGAGATGAG+AGG 0.661059 4_4:+47152888 None:intergenic
CTTTGTCAAAGGAAGTGTAG+CGG 0.665172 4_4:+47151671 None:intergenic
AGTGGAAGTAACTGCATCGG+CGG 0.666117 4_4:+47152600 None:intergenic
CTTCTGCACAGCAACATCCG+TGG 0.668398 4_4:+47152576 None:intergenic
GAAACAGAAGCCGAAGCCAG+AGG 0.676371 4_4:+47148331 None:intergenic
ACGGGAATAGTAGCCAAAGT+CGG 0.680935 4_4:+47151013 None:intergenic
GGTTAGGGGAGAAGTTGTTG+CGG 0.683683 4_4:+47152761 None:intergenic
GGAACAAGAAGTTACCGAAG+AGG 0.686286 4_4:-47147741 Msa0684030:CDS
ATACGAATAAGGCACATGCA+CGG 0.688460 4_4:+47151731 None:intergenic
GAACAACGATAGTATGACAA+CGG 0.698036 4_4:-47147429 Msa0684030:three_prime_UTR
GCAGTGTCATGCCAACCCAA+AGG 0.709975 4_4:+47149355 None:intergenic
AAGGCTATATACCCAAGCTG+GGG 0.714930 4_4:-47151211 Msa0684030:CDS
GTTGCTGTGCAGAAGAACGG+AGG 0.748792 4_4:-47152568 Msa0684030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTACTTAAGAATAAAT+TGG + chr4_4:47148971-47148990 None:intergenic 10.0%
!! AAACAATTTGTAAAAAAAAA+GGG + chr4_4:47150247-47150266 None:intergenic 10.0%
!! TTTATTTATTTATATCAGTA+TGG - chr4_4:47150754-47150773 Msa0684030:intron 10.0%
!! AAAAAAAAAAAAAGTAAGTT+AGG + chr4_4:47151085-47151104 None:intergenic 10.0%
!!! ATTCTTTATATGTTTTATTA+TGG - chr4_4:47151303-47151322 Msa0684030:intron 10.0%
!!! TTCTTTATATGTTTTATTAT+GGG - chr4_4:47151304-47151323 Msa0684030:intron 10.0%
!! TTCTATAAATAAATCAAATT+TGG - chr4_4:47151349-47151368 Msa0684030:intron 10.0%
!!! TTCGTAATTTAACTAATTTT+TGG - chr4_4:47147841-47147860 Msa0684030:intron 15.0%
!!! CATTTATGGTTTTTTTTTTT+TGG + chr4_4:47148758-47148777 None:intergenic 15.0%
!! CAAAAAAAAAAAACCATAAA+TGG - chr4_4:47148756-47148775 Msa0684030:intron 15.0%
!!! ATTGAAAACTTTTAATTTGA+AGG - chr4_4:47149420-47149439 Msa0684030:intron 15.0%
!!! TTGAAAACTTTTAATTTGAA+GGG - chr4_4:47149421-47149440 Msa0684030:intron 15.0%
!! GAAACAATTTGTAAAAAAAA+AGG + chr4_4:47150248-47150267 None:intergenic 15.0%
!!! TTAGTTTCTTTATAGTTTTA+CGG - chr4_4:47150527-47150546 Msa0684030:intron 15.0%
!! TTAAAATATAGGAACTTAAT+AGG + chr4_4:47151255-47151274 None:intergenic 15.0%
!! TAAAACATATAAAGAATGTA+TGG + chr4_4:47151300-47151319 None:intergenic 15.0%
!!! ACAATAGTTTCAATTTTTAA+GGG + chr4_4:47152170-47152189 None:intergenic 15.0%
!!! TACAATAGTTTCAATTTTTA+AGG + chr4_4:47152171-47152190 None:intergenic 15.0%
!! AAAATTGAAACTATTGTATA+AGG - chr4_4:47152173-47152192 Msa0684030:intron 15.0%
!!! GAAATTTGTATTTTCTTATA+TGG + chr4_4:47152271-47152290 None:intergenic 15.0%
!! TTTCTCAAAAAAGTAAAAAT+AGG + chr4_4:47152442-47152461 None:intergenic 15.0%
!! CTTAAATTACATTAAAATGA+CGG + chr4_4:47152473-47152492 None:intergenic 15.0%
!! TTTATTTCATATGCTTTCTT+TGG + chr4_4:47147879-47147898 None:intergenic 20.0%
!! AAAATAAGCTGAAAATAGTT+TGG - chr4_4:47147916-47147935 Msa0684030:intron 20.0%
!! AAATAAGCTGAAAATAGTTT+GGG - chr4_4:47147917-47147936 Msa0684030:intron 20.0%
!!! ATTTGTTTTTATGTGATCTT+TGG - chr4_4:47147950-47147969 Msa0684030:intron 20.0%
!! AACAAAATCCTTATATAGTA+AGG + chr4_4:47148035-47148054 None:intergenic 20.0%
!! TCATGAAATTTGTATTATTG+AGG - chr4_4:47148065-47148084 Msa0684030:intron 20.0%
!! TGGAAATGTATACATATAAA+TGG - chr4_4:47148320-47148339 Msa0684030:CDS 20.0%
!!! TAGTTTTGTTTTCCTTTTTA+TGG + chr4_4:47148438-47148457 None:intergenic 20.0%
!! CATTAAAAACAAACCATAAA+TGG - chr4_4:47148723-47148742 Msa0684030:intron 20.0%
!!! TGACTTTATTTAATACATGT+AGG - chr4_4:47148836-47148855 Msa0684030:intron 20.0%
!!! GCAATTTTATCATTTTGTAT+AGG - chr4_4:47149249-47149268 Msa0684030:intron 20.0%
!! CATATGCATAACTTATAAAA+AGG + chr4_4:47149828-47149847 None:intergenic 20.0%
!!! CTTATTTTCATAAGCTTTTA+TGG + chr4_4:47150356-47150375 None:intergenic 20.0%
!! TATAAAGAAACTAATTGATG+TGG + chr4_4:47150521-47150540 None:intergenic 20.0%
!!! AGTTTTCTTCTACATTTTTT+TGG - chr4_4:47150704-47150723 Msa0684030:intron 20.0%
!! TGTTATGTTATATTGTATAG+CGG + chr4_4:47150882-47150901 None:intergenic 20.0%
!! TAAAATAATAAGGAAAGAGA+AGG + chr4_4:47151053-47151072 None:intergenic 20.0%
!! TATTTCACAAACTATATCAA+TGG - chr4_4:47151218-47151237 Msa0684030:CDS 20.0%
!!! AAAGAAAAAGGTGTATTATA+TGG + chr4_4:47151397-47151416 None:intergenic 20.0%
!! ATTTCATCTTTATACAAGAT+TGG + chr4_4:47152231-47152250 None:intergenic 20.0%
!! AATCTTGTATAAAGATGAAA+TGG - chr4_4:47152230-47152249 Msa0684030:intron 20.0%
!!! CGTCATTTTAATGTAATTTA+AGG - chr4_4:47152471-47152490 Msa0684030:intron 20.0%
!!! ATTTTAATGTAATTTAAGGC+TGG - chr4_4:47152475-47152494 Msa0684030:intron 20.0%
!!! GTAAGTTTTGTATATTACAA+CGG - chr4_4:47152693-47152712 Msa0684030:CDS 20.0%
!!! GTAAGTTTTGTATATTTCAA+CGG - chr4_4:47152913-47152932 Msa0684030:five_prime_UTR 20.0%
! AACATCAATAGAATGAGTTA+AGG + chr4_4:47147614-47147633 None:intergenic 25.0%
!!! TCAGCTTATTTTCATAAGTT+CGG + chr4_4:47147908-47147927 None:intergenic 25.0%
! TTATATAGTAAGGTCATGTT+TGG + chr4_4:47148025-47148044 None:intergenic 25.0%
! AAACATGACCTTACTATATA+AGG - chr4_4:47148024-47148043 Msa0684030:intron 25.0%
! TACAAATTTCATGAATCTCA+AGG + chr4_4:47148059-47148078 None:intergenic 25.0%
! TTTAAATGAGAACGATGTTA+AGG - chr4_4:47148177-47148196 Msa0684030:intron 25.0%
!!! ATGATAACTCTAAAGCAAAA+GGG + chr4_4:47148406-47148425 None:intergenic 25.0%
! CATGTAAAATAGCCATAAAA+AGG - chr4_4:47148423-47148442 Msa0684030:intron 25.0%
! TGTTGTTACTCAGATATTAA+AGG - chr4_4:47148526-47148545 Msa0684030:CDS 25.0%
! CAAATTACAGCAATTTCTAT+AGG - chr4_4:47148657-47148676 Msa0684030:intron 25.0%
!!! TGTTTTTAATGTTTCAAACG+AGG + chr4_4:47148714-47148733 None:intergenic 25.0%
!!! ATGGTTTTTTTTTTTTGGAC+TGG + chr4_4:47148753-47148772 None:intergenic 25.0%
! CTGAAAGAAAAATCCATTTA+TGG + chr4_4:47148772-47148791 None:intergenic 25.0%
! AAACCTTCAACCTAAAATTA+AGG - chr4_4:47148881-47148900 Msa0684030:intron 25.0%
! AGTTGAGATGAAAATGATAA+AGG + chr4_4:47149144-47149163 None:intergenic 25.0%
!! TAGTTAGGAATTTAGCATTT+TGG - chr4_4:47149973-47149992 Msa0684030:intron 25.0%
!! AGTTAGGAATTTAGCATTTT+GGG - chr4_4:47149974-47149993 Msa0684030:intron 25.0%
!!! TATACAAATTGTTTCTACCA+AGG - chr4_4:47150109-47150128 Msa0684030:intron 25.0%
!!! ATACAAATTGTTTCTACCAA+GGG - chr4_4:47150110-47150129 Msa0684030:intron 25.0%
!! TTTCATAAGCTTTTATGGAT+AGG + chr4_4:47150351-47150370 None:intergenic 25.0%
!! GTGTTTATAAGAGTGTATTT+AGG + chr4_4:47150460-47150479 None:intergenic 25.0%
! ACAAGCAAAATGATTTACTA+GGG + chr4_4:47150484-47150503 None:intergenic 25.0%
! AACAAGCAAAATGATTTACT+AGG + chr4_4:47150485-47150504 None:intergenic 25.0%
!!! AATCATTTTGCTTGTTACAA+TGG - chr4_4:47150489-47150508 Msa0684030:intron 25.0%
! ACTTTAGTATTTCTTCTCTT+TGG - chr4_4:47150645-47150664 Msa0684030:intron 25.0%
! AAAAAGAAAGTGAGAAAAGA+GGG + chr4_4:47150675-47150694 None:intergenic 25.0%
! TAAAAAGAAAGTGAGAAAAG+AGG + chr4_4:47150676-47150695 None:intergenic 25.0%
!! TTTTCTCACTTTCTTTTTAC+AGG - chr4_4:47150677-47150696 Msa0684030:intron 25.0%
!! TTTCTCACTTTCTTTTTACA+GGG - chr4_4:47150678-47150697 Msa0684030:intron 25.0%
! ATCATTTATCAAGATGTAGT+AGG - chr4_4:47150820-47150839 Msa0684030:CDS 25.0%
! TCTTTCTCAATATGTTTCAA+TGG - chr4_4:47150990-47151009 Msa0684030:CDS 25.0%
! GTCTGCTTTGTAAAATAATA+AGG + chr4_4:47151063-47151082 None:intergenic 25.0%
! ATAAAGAATGTATGGAGTTA+TGG + chr4_4:47151292-47151311 None:intergenic 25.0%
!! AAAGGTGTATTATATGGATA+CGG + chr4_4:47151391-47151410 None:intergenic 25.0%
!! AAATGGTTTCTGAAAGAAAA+AGG + chr4_4:47151409-47151428 None:intergenic 25.0%
!!! AGATTTTTTTTCCTTTTGCT+AGG - chr4_4:47151642-47151661 Msa0684030:intron 25.0%
! AATTTGCCATAAGTATATGA+GGG + chr4_4:47151859-47151878 None:intergenic 25.0%
! ATTGTATACAATTTGTGACT+AGG + chr4_4:47152042-47152061 None:intergenic 25.0%
! AGAGAGAAAGAAGTAATTAA+AGG - chr4_4:47152077-47152096 Msa0684030:intron 25.0%
!!! AAGAAGTAATTAAAGGTGTT+TGG - chr4_4:47152084-47152103 Msa0684030:intron 25.0%
! TTCTATGCAATATGAAATCA+TGG + chr4_4:47152146-47152165 None:intergenic 25.0%
! TATACAAGATTGGAAATAGA+TGG + chr4_4:47152221-47152240 None:intergenic 25.0%
! TAAGAAAATACAAATTTCCC+AGG - chr4_4:47152273-47152292 Msa0684030:intron 25.0%
!! AATTTACATTTGCTAACATG+TGG + chr4_4:47152797-47152816 None:intergenic 25.0%
!!! GTTTTTAATTGTAAGAAAGC+AGG + chr4_4:47152835-47152854 None:intergenic 25.0%
GAATGAGTTAAGGATTGAAT+TGG + chr4_4:47147604-47147623 None:intergenic 30.0%
TCTAAGAAAAAACTCAACGA+CGG + chr4_4:47148130-47148149 None:intergenic 30.0%
TAAAGTACGTTCAAAACCAA+CGG + chr4_4:47148161-47148180 None:intergenic 30.0%
ATCCTGAAATTATATGTTGC+AGG - chr4_4:47148205-47148224 Msa0684030:intron 30.0%
TCCTGAAATTATATGTTGCA+GGG - chr4_4:47148206-47148225 Msa0684030:intron 30.0%
! GTAATGCTATTTGTTTCGAA+AGG - chr4_4:47148348-47148367 Msa0684030:CDS 30.0%
!! CATGATAACTCTAAAGCAAA+AGG + chr4_4:47148407-47148426 None:intergenic 30.0%
! CAATCCTCCAATTTTATTAC+AGG + chr4_4:47148480-47148499 None:intergenic 30.0%
GTTACTCAGATATTAAAGGA+TGG - chr4_4:47148530-47148549 Msa0684030:CDS 30.0%
ATAGCAAATCCATACGAATA+AGG + chr4_4:47148575-47148594 None:intergenic 30.0%
ATTGCTCACTCTTATTGTTA+AGG - chr4_4:47148598-47148617 Msa0684030:CDS 30.0%
ACGAGGTTATCATAATTTCA+TGG + chr4_4:47148697-47148716 None:intergenic 30.0%
!! TCTTGAATGGCCTTAATTTT+AGG + chr4_4:47148894-47148913 None:intergenic 30.0%
TGTACCTTAAAATGATAGCA+TGG - chr4_4:47148997-47149016 Msa0684030:intron 30.0%
! ACAACCATGCTATCATTTTA+AGG + chr4_4:47149004-47149023 None:intergenic 30.0%
GTATTCTTTCCTTGAAATGA+GGG + chr4_4:47149048-47149067 None:intergenic 30.0%
TGTATTCTTTCCTTGAAATG+AGG + chr4_4:47149049-47149068 None:intergenic 30.0%
AACATTTGCCATATCATAAC+TGG - chr4_4:47149210-47149229 Msa0684030:intron 30.0%
ACATTTGCCATATCATAACT+GGG - chr4_4:47149211-47149230 Msa0684030:intron 30.0%
! ATACCAAGCTTTATCTAATG+TGG - chr4_4:47149314-47149333 Msa0684030:CDS 30.0%
TTTATCTAATGTGGCAAATG+AGG - chr4_4:47149323-47149342 Msa0684030:CDS 30.0%
TGTTAACAGAAGGTTTCTTA+TGG - chr4_4:47149446-47149465 Msa0684030:intron 30.0%
AAAGGATAACTTACCACAAA+TGG + chr4_4:47149541-47149560 None:intergenic 30.0%
!!! CGAAGTATTTTTTTCGCATT+TGG - chr4_4:47149570-47149589 Msa0684030:intron 30.0%
GCTTGCAAAAATATATGCAA+AGG - chr4_4:47149800-47149819 Msa0684030:intron 30.0%
! ACTGAAATCTAAGACTAACT+GGG + chr4_4:47149860-47149879 None:intergenic 30.0%
! TACTGAAATCTAAGACTAAC+TGG + chr4_4:47149861-47149880 None:intergenic 30.0%
ATTTCAGTAAATACGAGACA+TGG - chr4_4:47149872-47149891 Msa0684030:intron 30.0%
! TGCAGATTCTTTTAGTAGTT+AGG - chr4_4:47149958-47149977 Msa0684030:intron 30.0%
! GTTAGGAATTTAGCATTTTG+GGG - chr4_4:47149975-47149994 Msa0684030:intron 30.0%
! TTAGGAATTTAGCATTTTGG+GGG - chr4_4:47149976-47149995 Msa0684030:intron 30.0%
!! AATTGTTTCTACCATCAAAG+AGG - chr4_4:47150259-47150278 Msa0684030:intron 30.0%
AAGCAAAATGATTTACTAGG+GGG + chr4_4:47150482-47150501 None:intergenic 30.0%
CAAGCAAAATGATTTACTAG+GGG + chr4_4:47150483-47150502 None:intergenic 30.0%
GTCTTGTAGTAAATGTAACT+AGG - chr4_4:47150586-47150605 Msa0684030:intron 30.0%
AGTAAATGTAACTAGGAAGT+AGG - chr4_4:47150593-47150612 Msa0684030:intron 30.0%
!!! CTTCTACATTTTTTTGGTTG+TGG - chr4_4:47150710-47150729 Msa0684030:intron 30.0%
TCTTGATAAATGATTGCAGT+AGG + chr4_4:47150814-47150833 None:intergenic 30.0%
ATTTATCAAGATGTAGTAGG+CGG - chr4_4:47150823-47150842 Msa0684030:CDS 30.0%
TGAGAAAGAATAAGAAGAAC+AGG + chr4_4:47150979-47150998 None:intergenic 30.0%
!! AGAAGTGTATTCTTTTGAGT+AGG + chr4_4:47151121-47151140 None:intergenic 30.0%
ATACTTGTGTTTCACACATT+AGG + chr4_4:47151446-47151465 None:intergenic 30.0%
ACTTAGATACTTCTTTCTGA+AGG - chr4_4:47151487-47151506 Msa0684030:intron 30.0%
TTATTCGTAAACCTAGCAAA+AGG + chr4_4:47151656-47151675 None:intergenic 30.0%
TTCAATCCCTCATATACTTA+TGG - chr4_4:47151850-47151869 Msa0684030:intron 30.0%
CAATTTGCCATAAGTATATG+AGG + chr4_4:47151860-47151879 None:intergenic 30.0%
CTCATATACTTATGGCAAAT+TGG - chr4_4:47151858-47151877 Msa0684030:intron 30.0%
GAAGAAGAAAAAGTTAAGCA+AGG - chr4_4:47151915-47151934 Msa0684030:intron 30.0%
!! TTTTCTTTTTGTCTGGAGTT+GGG + chr4_4:47152112-47152131 None:intergenic 30.0%
! ATTGAGCTTTTCTTTTTGTC+TGG + chr4_4:47152119-47152138 None:intergenic 30.0%
AATAGATGGTAGTTGGAATT+CGG + chr4_4:47152207-47152226 None:intergenic 30.0%
! TCCTGTATAAAGTTGGTTTA+GGG + chr4_4:47152534-47152553 None:intergenic 30.0%
! TTCCTGTATAAAGTTGGTTT+AGG + chr4_4:47152535-47152554 None:intergenic 30.0%
TTCTTGTTCCTGTATAAAGT+TGG + chr4_4:47152541-47152560 None:intergenic 30.0%
AGAAAAACTTTGAACCTCTT+GGG + chr4_4:47152595-47152614 None:intergenic 30.0%
TAGAAAAACTTTGAACCTCT+TGG + chr4_4:47152596-47152615 None:intergenic 30.0%
! AAGAGGTTCAAAGTTTTTCT+AGG - chr4_4:47152595-47152614 Msa0684030:CDS 30.0%
! AGAGGTTCAAAGTTTTTCTA+GGG - chr4_4:47152596-47152615 Msa0684030:CDS 30.0%
AAACTACAAACAATTGTGTG+TGG + chr4_4:47152670-47152689 None:intergenic 30.0%
ATTTCATCTCCATCCTTCAT+CGG - chr4_4:47147487-47147506 Msa0684030:three_prime_UTR 35.0%
TATATAGTCTGGTACGGTTA+GGG + chr4_4:47147549-47147568 None:intergenic 35.0%
CTTTGGTATATAGTCTGGTA+CGG + chr4_4:47147555-47147574 None:intergenic 35.0%
GTGAACTTTGGTATATAGTC+TGG + chr4_4:47147560-47147579 None:intergenic 35.0%
ATTGAATTGGTGGAATTTGG+TGG + chr4_4:47147591-47147610 None:intergenic 35.0%
AGGATTGAATTGGTGGAATT+TGG + chr4_4:47147594-47147613 None:intergenic 35.0%
TGAGTTAAGGATTGAATTGG+TGG + chr4_4:47147601-47147620 None:intergenic 35.0%
ACTCATTCTATTGATGTTGC+CGG - chr4_4:47147616-47147635 Msa0684030:three_prime_UTR 35.0%
TACCTTAAGAACAAACTCCA+TGG + chr4_4:47147773-47147792 None:intergenic 35.0%
TTCTTAGAAGATTGAACCGT+TGG - chr4_4:47148142-47148161 Msa0684030:intron 35.0%
TCCCTGCAACATATAATTTC+AGG + chr4_4:47148210-47148229 None:intergenic 35.0%
!! ACTCTAAAGCAAAAGGGTAA+GGG + chr4_4:47148400-47148419 None:intergenic 35.0%
!! AACTCTAAAGCAAAAGGGTA+AGG + chr4_4:47148401-47148420 None:intergenic 35.0%
! CCAATTTTATTACAGGAACG+TGG + chr4_4:47148473-47148492 None:intergenic 35.0%
CCACGTTCCTGTAATAAAAT+TGG - chr4_4:47148470-47148489 Msa0684030:intron 35.0%
CGTTCCTGTAATAAAATTGG+AGG - chr4_4:47148473-47148492 Msa0684030:intron 35.0%
!!! GGAGGATTGCATTTTTTAAC+AGG - chr4_4:47148491-47148510 Msa0684030:intron 35.0%
!!! TGGCCTTAATTTTAGGTTGA+AGG + chr4_4:47148887-47148906 None:intergenic 35.0%
ATTTCATTGCCCTCATTTCA+AGG - chr4_4:47149036-47149055 Msa0684030:intron 35.0%
GAATACAACTTGAGACTTCA+AGG - chr4_4:47149062-47149081 Msa0684030:intron 35.0%
ATATAACTGTACCTGCCAAA+GGG + chr4_4:47149111-47149130 None:intergenic 35.0%
!! TATAGGTTGTTTACCGACTT+TGG - chr4_4:47149266-47149285 Msa0684030:intron 35.0%
TTGCCACATTAGATAAAGCT+TGG + chr4_4:47149320-47149339 None:intergenic 35.0%
GTGGCAAATGAGGTAATTAA+TGG - chr4_4:47149333-47149352 Msa0684030:CDS 35.0%
TGGAAAAAGCCAAGAAATTC+CGG + chr4_4:47149521-47149540 None:intergenic 35.0%
!! TTCTTGGCTTTTTCCATTTG+TGG - chr4_4:47149525-47149544 Msa0684030:intron 35.0%
AATACTTCGCTTATGAGCAA+AGG + chr4_4:47149559-47149578 None:intergenic 35.0%
GACATCAGACTATTTACTCT+TGG - chr4_4:47149641-47149660 Msa0684030:intron 35.0%
! CTCTTGGCAATCATTTTCTT+TGG - chr4_4:47149657-47149676 Msa0684030:intron 35.0%
TTTGTTTCAAGAACCATGAC+TGG + chr4_4:47149691-47149710 None:intergenic 35.0%
AGTAATGTAGCAATTTGCGT+AGG - chr4_4:47149773-47149792 Msa0684030:intron 35.0%
TAAGACTAACTGGGACAATA+GGG + chr4_4:47149851-47149870 None:intergenic 35.0%
AATGCTCATTTAGTCCCTAT+TGG + chr4_4:47150033-47150052 None:intergenic 35.0%
TAGGGACTAAATGAGCATTT+AGG - chr4_4:47150034-47150053 Msa0684030:intron 35.0%
TGTAAAAAAAAAGGGCAGCT+CGG + chr4_4:47150239-47150258 None:intergenic 35.0%
AACTCTCATTTCCTCTTTGA+TGG + chr4_4:47150273-47150292 None:intergenic 35.0%
TAAACATTTGAGCAAGTGCT+TGG + chr4_4:47150423-47150442 None:intergenic 35.0%
!! CTTTATAGTTTTACGGAGCT+CGG - chr4_4:47150534-47150553 Msa0684030:intron 35.0%
! TTTATTGGTTGTGTTGTGGT+AGG - chr4_4:47150559-47150578 Msa0684030:intron 35.0%
AAGTTTCTTCCACTCATGAT+CGG - chr4_4:47151148-47151167 Msa0684030:intron 35.0%
CAGTAAATTGTTAGTCCTGA+TGG + chr4_4:47151193-47151212 None:intergenic 35.0%
CATCAGGACTAACAATTTAC+TGG - chr4_4:47151191-47151210 Msa0684030:intron 35.0%
TATCTAAGTTCTCGTGCATA+TGG + chr4_4:47151476-47151495 None:intergenic 35.0%
CAAATATGGTTGCGCAAATT+AGG - chr4_4:47151695-47151714 Msa0684030:CDS 35.0%
AGATGCTGGTGGAATTATTA+CGG - chr4_4:47151742-47151761 Msa0684030:CDS 35.0%
! ATCATTTTCTAAGCCCGAAA+AGG - chr4_4:47151781-47151800 Msa0684030:intron 35.0%
! AGGTCAGTATTTTACGATAC+AGG - chr4_4:47151812-47151831 Msa0684030:intron 35.0%
! ATGGCAAATTGGTGATTTAC+AGG - chr4_4:47151869-47151888 Msa0684030:intron 35.0%
GTTTACGCAGTTAAAAGAAG+AGG - chr4_4:47151891-47151910 Msa0684030:intron 35.0%
!! CTTTTCTTTTTGTCTGGAGT+TGG + chr4_4:47152113-47152132 None:intergenic 35.0%
GATTGGAAATAGATGGTAGT+TGG + chr4_4:47152214-47152233 None:intergenic 35.0%
AATTTCCCAGGAAATTCAAG+AGG - chr4_4:47152285-47152304 Msa0684030:intron 35.0%
!!! GGGTTTTTTTGGTAGAAGAA+TGG + chr4_4:47152513-47152532 None:intergenic 35.0%
!!! AGTTGGTTTAGGGGTTTTTT+TGG + chr4_4:47152524-47152543 None:intergenic 35.0%
! CCTGTATAAAGTTGGTTTAG+GGG + chr4_4:47152533-47152552 None:intergenic 35.0%
GAAAAACTTTGAACCTCTTG+GGG + chr4_4:47152594-47152613 None:intergenic 35.0%
GAAAGCCTGTTGTATGATAA+CGG - chr4_4:47152643-47152662 Msa0684030:CDS 35.0%
! ACAACGGTCTGTAACATTTT+TGG - chr4_4:47152709-47152728 Msa0684030:CDS 35.0%
! CAACGGTCTGTAACATTTTT+GGG - chr4_4:47152710-47152729 Msa0684030:CDS 35.0%
TCATACTATCGTTGTTCAAC+AGG + chr4_4:47152860-47152879 None:intergenic 35.0%
GAACAACGATAGTATGACAA+CGG - chr4_4:47152863-47152882 Msa0684030:five_prime_UTR 35.0%
TAGAGACAAGTGCACGATAT+GGG + chr4_4:47147346-47147365 None:intergenic 40.0%
CCTCGCAAACAAAATGCATT+CGG - chr4_4:47147366-47147385 Msa0684030:three_prime_UTR 40.0%
CTTTCTTCAGCTTCTCGTTA+CGG + chr4_4:47147422-47147441 None:intergenic 40.0%
ATATAGTCTGGTACGGTTAG+GGG + chr4_4:47147548-47147567 None:intergenic 40.0%
GTATATAGTCTGGTACGGTT+AGG + chr4_4:47147550-47147569 None:intergenic 40.0%
GTGGAAACTGAAGTGAACTT+TGG + chr4_4:47147572-47147591 None:intergenic 40.0%
ATAAAGAAGTCCTTCAGCTC+TGG + chr4_4:47147650-47147669 None:intergenic 40.0%
AAGAACAAACTCCATGGCAT+CGG + chr4_4:47147767-47147786 None:intergenic 40.0%
! TGCCATGGAGTTTGTTCTTA+AGG - chr4_4:47147768-47147787 Msa0684030:intron 40.0%
TCCACCAGTTTCAATGTACT+TGG - chr4_4:47148374-47148393 Msa0684030:CDS 40.0%
ATACGAATAAGGCACATGCA+CGG + chr4_4:47148564-47148583 None:intergenic 40.0%
! CTTTGTCAAAGGAAGTGTAG+CGG + chr4_4:47148624-47148643 None:intergenic 40.0%
ACTTCCTTTGACAAAGCAAC+AGG - chr4_4:47148628-47148647 Msa0684030:CDS 40.0%
!! CTAACCTGTTGCTTTGTCAA+AGG + chr4_4:47148635-47148654 None:intergenic 40.0%
!! TTGGACTGGCAATCCATTTA+TGG + chr4_4:47148739-47148758 None:intergenic 40.0%
GCCATTCAAGAAAGATATGC+CGG - chr4_4:47148903-47148922 Msa0684030:intron 40.0%
GATATAACTGTACCTGCCAA+AGG + chr4_4:47149112-47149131 None:intergenic 40.0%
AGTACAGCCCAGTTATGATA+TGG + chr4_4:47149221-47149240 None:intergenic 40.0%
AACTGGGCTGTACTTAAAGA+AGG - chr4_4:47149227-47149246 Msa0684030:intron 40.0%
TTGGTATAGACCAATCCAGA+CGG + chr4_4:47149301-47149320 None:intergenic 40.0%
TTGAAGGGACTGTTAACAGA+AGG - chr4_4:47149436-47149455 Msa0684030:intron 40.0%
TTCTTATGGATCCCTTCTCT+CGG - chr4_4:47149460-47149479 Msa0684030:intron 40.0%
AAAGTGGATCCGGAATTTCT+TGG - chr4_4:47149509-47149528 Msa0684030:intron 40.0%
! TTTGGAGCTTATTCCAGTCA+TGG - chr4_4:47149675-47149694 Msa0684030:intron 40.0%
CTAAGACTAACTGGGACAAT+AGG + chr4_4:47149852-47149871 None:intergenic 40.0%
AGACATGGTTTATGCAGCAT+GGG - chr4_4:47149887-47149906 Msa0684030:intron 40.0%
!! GAATTTAGCATTTTGGGGGT+GGG - chr4_4:47149980-47149999 Msa0684030:intron 40.0%
!! AATTTAGCATTTTGGGGGTG+GGG - chr4_4:47149981-47150000 Msa0684030:intron 40.0%
! GGTGTTTATTGGTTGTGTTG+TGG - chr4_4:47150555-47150574 Msa0684030:intron 40.0%
TGTAACTAGGAAGTAGGAAC+TGG - chr4_4:47150599-47150618 Msa0684030:intron 40.0%
GTAACTAGGAAGTAGGAACT+GGG - chr4_4:47150600-47150619 Msa0684030:intron 40.0%
ACGTCTGTTAATTGTTGTGC+AGG - chr4_4:47150903-47150922 Msa0684030:intron 40.0%
CTGTTAATTGTTGTGCAGGA+TGG - chr4_4:47150907-47150926 Msa0684030:intron 40.0%
TAGGAACTTAATAGGCAGAG+AGG + chr4_4:47151247-47151266 None:intergenic 40.0%
AGGCAGTCATATCAAGGAAA+TGG + chr4_4:47151426-47151445 None:intergenic 40.0%
CACATTAGGCAGTCATATCA+AGG + chr4_4:47151432-47151451 None:intergenic 40.0%
ACACACACACTACTAGATGT+GGG - chr4_4:47151561-47151580 Msa0684030:intron 40.0%
! ATATTTGTTGAGCTGTGCTC+AGG + chr4_4:47151682-47151701 None:intergenic 40.0%
TGAGCACAGCTCAACAAATA+TGG - chr4_4:47151681-47151700 Msa0684030:CDS 40.0%
ATATGGTTGCGCAAATTAGG+AGG - chr4_4:47151698-47151717 Msa0684030:CDS 40.0%
! TTTTCTAAGCCCGAAAAGGA+TGG - chr4_4:47151785-47151804 Msa0684030:intron 40.0%
! TGACCTTTCACCATCCTTTT+CGG + chr4_4:47151798-47151817 None:intergenic 40.0%
TATGAGGGATTGAAAGACTG+AGG + chr4_4:47151844-47151863 None:intergenic 40.0%
! TTTTACATCCGAGCCATCAT+CGG + chr4_4:47151986-47152005 None:intergenic 40.0%
CTCGGATGTAAAAAACGAGA+AGG - chr4_4:47151993-47152012 Msa0684030:intron 40.0%
AATAGGATGGTCAGATGGTT+AGG + chr4_4:47152377-47152396 None:intergenic 40.0%
TGGGAAAATCAGGAATAGGA+TGG + chr4_4:47152390-47152409 None:intergenic 40.0%
AGCATGGGAAAATCAGGAAT+AGG + chr4_4:47152394-47152413 None:intergenic 40.0%
! TTCCTGATTTTCCCATGCTA+CGG - chr4_4:47152395-47152414 Msa0684030:intron 40.0%
! CAACATCTTTTCCGTAGCAT+GGG + chr4_4:47152409-47152428 None:intergenic 40.0%
! TCAACATCTTTTCCGTAGCA+TGG + chr4_4:47152410-47152429 None:intergenic 40.0%
CCCCTAAACCAACTTTATAC+AGG - chr4_4:47152530-47152549 Msa0684030:CDS 40.0%
AGAAAGCAGGTGTCTGTTAA+AGG + chr4_4:47152822-47152841 None:intergenic 40.0%
! TCAACGGTGTGTAACACTTT+TGG - chr4_4:47152929-47152948 Msa0684030:five_prime_UTR 40.0%
! CAACGGTGTGTAACACTTTT+GGG - chr4_4:47152930-47152949 Msa0684030:five_prime_UTR 40.0%
GTAGAGACAAGTGCACGATA+TGG + chr4_4:47147347-47147366 None:intergenic 45.0%
!! CCGAATGCATTTTGTTTGCG+AGG + chr4_4:47147369-47147388 None:intergenic 45.0%
CGTTACGGAATAGAGATGAG+AGG + chr4_4:47147407-47147426 None:intergenic 45.0%
TGAAATCAGTGTCTTCGCCA+TGG + chr4_4:47147473-47147492 None:intergenic 45.0%
AAGTTGTTGCGGTGAAGTGA+AGG + chr4_4:47147523-47147542 None:intergenic 45.0%
GGAAGTGGAAGTAACTGCAT+CGG + chr4_4:47147698-47147717 None:intergenic 45.0%
TGCAGTTACTTCCACTTCCA+CGG - chr4_4:47147699-47147718 Msa0684030:CDS 45.0%
GATGTTGCTGTGCAGAAGAA+CGG - chr4_4:47147721-47147740 Msa0684030:CDS 45.0%
GCCAAGTACATTGAAACTGG+TGG + chr4_4:47148378-47148397 None:intergenic 45.0%
AGGGCCAAGTACATTGAAAC+TGG + chr4_4:47148381-47148400 None:intergenic 45.0%
CAGGAACGTGGAACATTTGT+CGG + chr4_4:47148461-47148480 None:intergenic 45.0%
! GTGCATGTGCCTTATTCGTA+TGG - chr4_4:47148563-47148582 Msa0684030:CDS 45.0%
GCCGGCATATCTTTCTTGAA+TGG + chr4_4:47148907-47148926 None:intergenic 45.0%
AGAAAGATATGCCGGCAATC+AGG - chr4_4:47148911-47148930 Msa0684030:intron 45.0%
TCAAGGCTATATACCCAAGC+TGG - chr4_4:47149079-47149098 Msa0684030:intron 45.0%
CAAGGCTATATACCCAAGCT+GGG - chr4_4:47149080-47149099 Msa0684030:intron 45.0%
AAGGCTATATACCCAAGCTG+GGG - chr4_4:47149081-47149100 Msa0684030:intron 45.0%
ACGGGAATAGTAGCCAAAGT+CGG + chr4_4:47149282-47149301 None:intergenic 45.0%
TGGTATAGACCAATCCAGAC+GGG + chr4_4:47149300-47149319 None:intergenic 45.0%
TGTCTAGCAGCAATGCTAGT+GGG + chr4_4:47149490-47149509 None:intergenic 45.0%
TTGTCTAGCAGCAATGCTAG+TGG + chr4_4:47149491-47149510 None:intergenic 45.0%
AGCATTGCTGCTAGACAAAG+TGG - chr4_4:47149493-47149512 Msa0684030:intron 45.0%
GTCACAGACTCACAAGTACT+AGG + chr4_4:47149608-47149627 None:intergenic 45.0%
GAGACATGGTTTATGCAGCA+TGG - chr4_4:47149886-47149905 Msa0684030:intron 45.0%
!! GGAATTTAGCATTTTGGGGG+TGG - chr4_4:47149979-47149998 Msa0684030:intron 45.0%
!! ATTTAGCATTTTGGGGGTGG+GGG - chr4_4:47149982-47150001 Msa0684030:intron 45.0%
TCACCACAGAATGTGCCAAT+AGG - chr4_4:47150015-47150034 Msa0684030:intron 45.0%
CACCACAGAATGTGCCAATA+GGG - chr4_4:47150016-47150035 Msa0684030:intron 45.0%
ACAACTTTACCATTGCGCCA+AGG + chr4_4:47150140-47150159 None:intergenic 45.0%
GTAGGGTACACCAAAATGGT+GGG - chr4_4:47150174-47150193 Msa0684030:intron 45.0%
ACATATGCAGGTCCAGGAAT+GGG + chr4_4:47150201-47150220 None:intergenic 45.0%
ATTCCTGGACCTGCATATGT+GGG - chr4_4:47150201-47150220 Msa0684030:intron 45.0%
ACTAAAGCTCCCACATATGC+AGG + chr4_4:47150213-47150232 None:intergenic 45.0%
!! TTACGGAGCTCGGTGTTTAT+TGG - chr4_4:47150544-47150563 Msa0684030:intron 45.0%
GGAAATCATGAAACCACCTC+AGG - chr4_4:47151011-47151030 Msa0684030:CDS 45.0%
ATACCTGACATGCTTACCTG+AGG + chr4_4:47151030-47151049 None:intergenic 45.0%
TTCTCACTATCTGTGCCATC+AGG - chr4_4:47151175-47151194 Msa0684030:intron 45.0%
CACACACACACTACTAGATG+TGG - chr4_4:47151560-47151579 Msa0684030:intron 45.0%
CCAGCATCTTCATTAACAGC+AGG + chr4_4:47151731-47151750 None:intergenic 45.0%
CCTGCTGTTAATGAAGATGC+TGG - chr4_4:47151728-47151747 Msa0684030:CDS 45.0%
GCTGTTAATGAAGATGCTGG+TGG - chr4_4:47151731-47151750 Msa0684030:CDS 45.0%
! GACCTTTCACCATCCTTTTC+GGG + chr4_4:47151797-47151816 None:intergenic 45.0%
AGAGGTTGAACTTCATCCAC+GGG + chr4_4:47151946-47151965 None:intergenic 45.0%
CAGAGGTTGAACTTCATCCA+CGG + chr4_4:47151947-47151966 None:intergenic 45.0%
! TGAAGTTCAACCTCTGGCTT+CGG - chr4_4:47151951-47151970 Msa0684030:intron 45.0%
! TTCTGTTTCCGATGATGGCT+CGG - chr4_4:47151975-47151994 Msa0684030:intron 45.0%
GAGGGAAAGGGAAACAAAGT+GGG + chr4_4:47152355-47152374 None:intergenic 45.0%
TCAGATGGTTAGGAGGGAAA+GGG + chr4_4:47152367-47152386 None:intergenic 45.0%
TCAGGAATAGGATGGTCAGA+TGG + chr4_4:47152382-47152401 None:intergenic 45.0%
TTCCGTAGCATGGGAAAATC+AGG + chr4_4:47152400-47152419 None:intergenic 45.0%
GGAACAAGAAGTTACCGAAG+AGG - chr4_4:47152551-47152570 Msa0684030:CDS 45.0%
TTTGGATGCATACGCCTCTT+CGG + chr4_4:47152568-47152587 None:intergenic 45.0%
TTGAACCTCTTGGGGAACTT+TGG + chr4_4:47152586-47152605 None:intergenic 45.0%
GTGGTCCGTTATCATACAAC+AGG + chr4_4:47152651-47152670 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTGTTATA+TGG - chr4_4:47148300-47148319 Msa0684030:CDS 5.0%
!! AAATTTGAAAATTAAAATAT+AGG + chr4_4:47151266-47151285 None:intergenic 5.0%
CAAGTGCACGATATGGGTAG+TGG + chr4_4:47147340-47147359 None:intergenic 50.0%
AAGCTGAGAGAGAGGCTTCA+AGG + chr4_4:47147445-47147464 None:intergenic 50.0%
TGGATGAGAAGCTGAGAGAG+AGG + chr4_4:47147453-47147472 None:intergenic 50.0%
CTCTCTCAGCTTCTCATCCA+TGG - chr4_4:47147453-47147472 Msa0684030:three_prime_UTR 50.0%
AGTGGAGTTCCGATGAAGGA+TGG + chr4_4:47147499-47147518 None:intergenic 50.0%
AGGAAGTGGAGTTCCGATGA+AGG + chr4_4:47147503-47147522 None:intergenic 50.0%
TTGCGGTGAAGTGAAGGAAG+TGG + chr4_4:47147517-47147536 None:intergenic 50.0%
GGTTAGGGGAGAAGTTGTTG+CGG + chr4_4:47147534-47147553 None:intergenic 50.0%
! AGTAACTGCATCGGCGGTAA+CGG + chr4_4:47147689-47147708 None:intergenic 50.0%
AGTGGAAGTAACTGCATCGG+CGG + chr4_4:47147695-47147714 None:intergenic 50.0%
! CAGAAGAACGGAGGTTGGTT+TGG - chr4_4:47147733-47147752 Msa0684030:CDS 50.0%
TGGTTTCATCTCCGATGCCA+TGG - chr4_4:47147753-47147772 Msa0684030:intron 50.0%
ATATGCCGGCAATCAGGTGA+GGG - chr4_4:47148917-47148936 Msa0684030:intron 50.0%
CAAAGGGTTAACCCCAGCTT+GGG + chr4_4:47149095-47149114 None:intergenic 50.0%
CTTTGGCTACTATTCCCGTC+TGG - chr4_4:47149283-47149302 Msa0684030:CDS 50.0%
GCTACTATTCCCGTCTGGAT+TGG - chr4_4:47149288-47149307 Msa0684030:CDS 50.0%
TTATGGATCCCTTCTCTCGG+TGG - chr4_4:47149463-47149482 Msa0684030:intron 50.0%
GCTGCTAGACAAAGTGGATC+CGG - chr4_4:47149499-47149518 Msa0684030:intron 50.0%
TATGCAGCATGGGTGCAAGT+TGG - chr4_4:47149897-47149916 Msa0684030:intron 50.0%
GTCCCTATTGGCACATTCTG+TGG + chr4_4:47150021-47150040 None:intergenic 50.0%
TTTCTACCAAGGGAGAGCCT+TGG - chr4_4:47150120-47150139 Msa0684030:intron 50.0%
CTGCGTAGGGTACACCAAAA+TGG - chr4_4:47150170-47150189 Msa0684030:intron 50.0%
CGTAGGGTACACCAAAATGG+TGG - chr4_4:47150173-47150192 Msa0684030:intron 50.0%
! AGGAATGGGTCCCACCATTT+TGG + chr4_4:47150187-47150206 None:intergenic 50.0%
! AAAATGGTGGGACCCATTCC+TGG - chr4_4:47150186-47150205 Msa0684030:intron 50.0%
CACATATGCAGGTCCAGGAA+TGG + chr4_4:47150202-47150221 None:intergenic 50.0%
CATTCCTGGACCTGCATATG+TGG - chr4_4:47150200-47150219 Msa0684030:intron 50.0%
GAGAAGTAGCCGATCATGAG+TGG + chr4_4:47151160-47151179 None:intergenic 50.0%
GCTGGTGGAATTATTACGGC+AGG - chr4_4:47151746-47151765 Msa0684030:CDS 50.0%
AGCCCGAAAAGGATGGTGAA+AGG - chr4_4:47151792-47151811 Msa0684030:intron 50.0%
CGTGGATGAAGTTCAACCTC+TGG - chr4_4:47151945-47151964 Msa0684030:intron 50.0%
TCGGCTTCTGTTTCCGATGA+TGG - chr4_4:47151970-47151989 Msa0684030:intron 50.0%
CCAGGCCTCTTGAATTTCCT+GGG + chr4_4:47152293-47152312 None:intergenic 50.0%
ACCAGGCCTCTTGAATTTCC+TGG + chr4_4:47152294-47152313 None:intergenic 50.0%
GGAAAGGGAAACAAAGTGGG+CGG + chr4_4:47152352-47152371 None:intergenic 50.0%
GGAGGGAAAGGGAAACAAAG+TGG + chr4_4:47152356-47152375 None:intergenic 50.0%
GTCAGATGGTTAGGAGGGAA+AGG + chr4_4:47152368-47152387 None:intergenic 50.0%
GGATGGTCAGATGGTTAGGA+GGG + chr4_4:47152373-47152392 None:intergenic 50.0%
AGGATGGTCAGATGGTTAGG+AGG + chr4_4:47152374-47152393 None:intergenic 50.0%
TGCATCCAAAGTTCCCCAAG+AGG - chr4_4:47152578-47152597 Msa0684030:CDS 50.0%
! TTCAGCTCTGGCGAAGACAC+CGG + chr4_4:47147638-47147657 None:intergenic 55.0%
CACAGCAACATCCGTGGAAG+TGG + chr4_4:47147713-47147732 None:intergenic 55.0%
CTTCTGCACAGCAACATCCG+TGG + chr4_4:47147719-47147738 None:intergenic 55.0%
GTTGCTGTGCAGAAGAACGG+AGG - chr4_4:47147724-47147743 Msa0684030:CDS 55.0%
CTGTGCAGAAGAACGGAGGT+TGG - chr4_4:47147728-47147747 Msa0684030:CDS 55.0%
GATATGCCGGCAATCAGGTG+AGG - chr4_4:47148916-47148935 Msa0684030:intron 55.0%
TATGCCGGCAATCAGGTGAG+GGG - chr4_4:47148918-47148937 Msa0684030:intron 55.0%
AACACCCCTCACCTGATTGC+CGG + chr4_4:47148925-47148944 None:intergenic 55.0%
CCAAAGGGTTAACCCCAGCT+TGG + chr4_4:47149096-47149115 None:intergenic 55.0%
CCAAGCTGGGGTTAACCCTT+TGG - chr4_4:47149093-47149112 Msa0684030:intron 55.0%
TAGTGGGACCACCGAGAGAA+GGG + chr4_4:47149474-47149493 None:intergenic 55.0%
TTGTTGTCACGCGACTGCGT+AGG - chr4_4:47150156-47150175 Msa0684030:intron 55.0%
TGTTGTCACGCGACTGCGTA+GGG - chr4_4:47150157-47150176 Msa0684030:intron 55.0%
CAGGATGGCCATCCACCTTT+GGG - chr4_4:47150922-47150941 Msa0684030:intron 55.0%
ATGGCCATCCACCTTTGGGT+TGG - chr4_4:47150926-47150945 Msa0684030:intron 55.0%
CATGCCAACCCAAAGGTGGA+TGG + chr4_4:47150933-47150952 None:intergenic 55.0%
GTGTCATGCCAACCCAAAGG+TGG + chr4_4:47150937-47150956 None:intergenic 55.0%
GCAGTGTCATGCCAACCCAA+AGG + chr4_4:47150940-47150959 None:intergenic 55.0%
CCTGACATGCTTACCTGAGG+TGG + chr4_4:47151027-47151046 None:intergenic 55.0%
CCACCTCAGGTAAGCATGTC+AGG - chr4_4:47151024-47151043 Msa0684030:CDS 55.0%
GAAACAGAAGCCGAAGCCAG+AGG + chr4_4:47151964-47151983 None:intergenic 55.0%
CCCAGGAAATTCAAGAGGCC+TGG - chr4_4:47152290-47152309 Msa0684030:intron 55.0%
AGTGGGCGGAAGACAGAATC+AGG + chr4_4:47152338-47152357 None:intergenic 55.0%
GGTGTCTTCGCCAGAGCTGA+AGG - chr4_4:47147637-47147656 Msa0684030:exon 60.0%
GCTGGGGTTAACCCTTTGGC+AGG - chr4_4:47149097-47149116 Msa0684030:intron 60.0%
CTAGTGGGACCACCGAGAGA+AGG + chr4_4:47149475-47149494 None:intergenic 60.0%
!! GCATTTTGGGGGTGGGGGTA+TGG - chr4_4:47149987-47150006 Msa0684030:intron 60.0%
ATTGCGCCAAGGCTCTCCCT+TGG + chr4_4:47150129-47150148 None:intergenic 60.0%
AAGGGAGAGCCTTGGCGCAA+TGG - chr4_4:47150128-47150147 Msa0684030:intron 60.0%
GCTCCCACATATGCAGGTCC+AGG + chr4_4:47150207-47150226 None:intergenic 60.0%
GCAGGATGGCCATCCACCTT+TGG - chr4_4:47150921-47150940 Msa0684030:intron 60.0%
!! GTTAAGCAAGGCACTGCCCG+TGG - chr4_4:47151927-47151946 Msa0684030:intron 60.0%
! ATCGGCGGTAACGGCAGCGT+CGG + chr4_4:47147680-47147699 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47147328 47152986 47147328 ID=Msa0684030;Name=Msa0684030
chr4_4 mRNA 47147328 47152986 47147328 ID=Msa0684030-mRNA-1;Parent=Msa0684030;Name=Msa0684030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=144|1|1|1|1|1|11|327|445
chr4_4 exon 47147328 47147762 47147328 ID=Msa0684030-mRNA-1:exon:11634;Parent=Msa0684030-mRNA-1
chr4_4 exon 47148300 47148423 47148300 ID=Msa0684030-mRNA-1:exon:11633;Parent=Msa0684030-mRNA-1
chr4_4 exon 47148501 47148650 47148501 ID=Msa0684030-mRNA-1:exon:11632;Parent=Msa0684030-mRNA-1
chr4_4 exon 47149102 47149205 47149102 ID=Msa0684030-mRNA-1:exon:11631;Parent=Msa0684030-mRNA-1
chr4_4 exon 47149282 47149389 47149282 ID=Msa0684030-mRNA-1:exon:11630;Parent=Msa0684030-mRNA-1
chr4_4 exon 47150768 47150872 47150768 ID=Msa0684030-mRNA-1:exon:11629;Parent=Msa0684030-mRNA-1
chr4_4 exon 47150970 47151043 47150970 ID=Msa0684030-mRNA-1:exon:11628;Parent=Msa0684030-mRNA-1
chr4_4 exon 47151196 47151256 47151196 ID=Msa0684030-mRNA-1:exon:11627;Parent=Msa0684030-mRNA-1
chr4_4 exon 47151382 47151456 47151382 ID=Msa0684030-mRNA-1:exon:11626;Parent=Msa0684030-mRNA-1
chr4_4 exon 47151665 47151775 47151665 ID=Msa0684030-mRNA-1:exon:11625;Parent=Msa0684030-mRNA-1
chr4_4 exon 47152525 47152986 47152525 ID=Msa0684030-mRNA-1:exon:11624;Parent=Msa0684030-mRNA-1
chr4_4 five_prime_UTR 47152843 47152986 47152843 ID=Msa0684030-mRNA-1:five_prime_utr;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47152525 47152842 47152525 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47151665 47151775 47151665 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47151382 47151456 47151382 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47151196 47151256 47151196 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47150970 47151043 47150970 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47150768 47150872 47150768 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47149282 47149389 47149282 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47149102 47149205 47149102 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47148501 47148650 47148501 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47148300 47148423 47148300 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 CDS 47147655 47147762 47147655 ID=Msa0684030-mRNA-1:cds;Parent=Msa0684030-mRNA-1
chr4_4 three_prime_UTR 47147328 47147654 47147328 ID=Msa0684030-mRNA-1:three_prime_utr;Parent=Msa0684030-mRNA-1
Gene Sequence

>Msa0684030

ATGGCGAAGACACTGATTTCATCTCCATCCTTCATCGGAACTCCACTTCCTTCACTTCACCGCAACAACTTCTCCCCTAACCGTACCAGACTATATACCAAAGTTCACTTCAGTTTCCACCAAATTCCACCAATTCAATCCTTAACTCATTCTATTGATGTTGCCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGACGCTGCCGTTACCGCCGATGCAGTTACTTCCACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGGTTGGTTTGGTTTCATCTCCGATGCCATGGAGTTTGTTCTTAAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGAAAGAATACAACTTGAGACTTCAAGGCTATATACCCAAGCTGGGGTTAACCCTTTGGCAGGTTGTTTACCGACTTTGGCTACTATTCCCGTCTGGATTGGTCTATACCAAGCTTTATCTAATGTGGCAAATGAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTCGGTGGTCCCACTAGCATTGCTGCTAGACAAAGTGGATCCGGAATTTCTTGGCTTTTTCCATTTGTGGATGGCCATCCACCTTTGGGTTGGCATGACACTGCAGCATATCTTGTTTTACCTGTTCTTCTTATTCTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGACAAATGATCCTACTCAAAAGAATACACTTCTTATTTTCAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTGCCATCAGGACTAACAATTTACTGGTTTACGAATAATGTCCTGAGCACAGCTCAACAAATATGGTTGCGCAAATTAGGAGGTGCAAAGCCTGCTGTTAATGAAGATGCTGGTGGAATTATTACGGCAGGACGAGCTAAGAGATCATTTTCTAAGCCCGAAAAGGATGGTGAAAGGTTTACGCAGTTAAAAGAAGAGGAGAAGAAGAAAAAGTTAAGCAAGGCACTGCCCGTGGATGAAGTTCAACCTCTGGCTTCGGCTTCTGTTTCCGATGATGGCTCGGATGTAAAAAACGAGAAGGAACAAGAAGTTACCGAAGAGGCGTATGCATCCAAAGTTCCCCAAGAGGTTCAAAGTTTTTCTAGGGAAAGAAGAAGCAAGCGTTCAAAGCGAAAGCCTGTTGTATGA

Protein sequence

>Msa0684030

MAKTLISSPSFIGTPLPSLHRNNFSPNRTRLYTKVHFSFHQIPPIQSLTHSIDVAGVFARAEGLLYTLADAAVTADAVTSTSTDVAVQKNGGWFGFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLILSQYVSMEIMKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQIWLRKLGGAKPAVNEDAGGIITAGRAKRSFSKPEKDGERFTQLKEEEKKKKLSKALPVDEVQPLASASVSDDGSDVKNEKEQEVTEEAYASKVPQEVQSFSRERRSKRSKRKPVV*