Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600030 | XP_003605947.1 | 97.026 | 538 | 16 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1077 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600030 | sp|Q00624|ASOL_BRANA | 56.757 | 518 | 214 | 4 | 23 | 531 | 24 | 540 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600030 | G7JDL2 | 97.026 | 538 | 16 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1077 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115550 | Msa0600030 | 0.803295 | 3.731275e-49 | -8.615850e-47 |
| Msa0140380 | Msa0600030 | 0.801483 | 8.816498e-49 | -8.615850e-47 |
| Msa0161930 | Msa0600030 | 0.801995 | 6.920441e-49 | -8.615850e-47 |
| Msa0383000 | Msa0600030 | 0.802357 | 5.828544e-49 | -8.615850e-47 |
| Msa0433150 | Msa0600030 | 0.804014 | 2.647322e-49 | -8.615850e-47 |
| Msa0600030 | Msa0716480 | 0.808404 | 3.148901e-50 | -8.615850e-47 |
| Msa0600030 | Msa0738700 | 0.803234 | 3.843007e-49 | -8.615850e-47 |
| Msa0600030 | Msa0837460 | 0.811129 | 8.170313e-51 | -8.615850e-47 |
| Msa0600030 | Msa0859290 | 0.801695 | 7.975057e-49 | -8.615850e-47 |
| Msa0600030 | Msa1002640 | 0.803469 | 3.434627e-49 | -8.615850e-47 |
| Msa0600030 | Msa1014320 | 0.816566 | 5.177066e-52 | -8.615850e-47 |
| Msa0600030 | Msa1169190 | 0.801594 | 8.364737e-49 | -8.615850e-47 |
| Msa0600030 | Msa1263780 | 0.801919 | 7.172643e-49 | -8.615850e-47 |
| Msa0600030 | Msa1409410 | 0.820004 | 8.622369e-53 | -8.615850e-47 |
| Msa0600030 | Msa1450190 | 0.807393 | 5.165983e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600030 | MtrunA17_Chr4g0024861 | 97.026 | 538 | 16 | 0 | 1 | 538 | 1 | 538 | 0.0 | 1077 |
| Msa0600030 | MtrunA17_Chr2g0322441 | 87.669 | 519 | 64 | 0 | 18 | 536 | 21 | 539 | 0.0 | 939 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 94.643 | 448 | 23 | 1 | 87 | 534 | 11 | 457 | 0.0 | 869 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 79.518 | 83 | 17 | 0 | 456 | 538 | 875 | 957 | 5.25e-36 | 143 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 68.687 | 99 | 24 | 2 | 438 | 534 | 798 | 891 | 2.06e-33 | 135 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 503 | 581 | 4.51e-33 | 134 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 565 | 643 | 4.51e-33 | 134 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 627 | 705 | 4.51e-33 | 134 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 79.747 | 79 | 16 | 0 | 456 | 534 | 689 | 767 | 4.51e-33 | 134 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 95.238 | 63 | 3 | 0 | 472 | 534 | 457 | 519 | 1.41e-32 | 133 |
| Msa0600030 | MtrunA17_Chr4g0024641 | 78.481 | 79 | 17 | 0 | 456 | 534 | 751 | 829 | 5.56e-32 | 131 |
| Msa0600030 | MtrunA17_Chr4g0038671 | 71.322 | 537 | 146 | 2 | 1 | 537 | 11 | 539 | 0.0 | 808 |
| Msa0600030 | MtrunA17_Chr1g0157341 | 72.693 | 531 | 145 | 0 | 7 | 537 | 9 | 539 | 0.0 | 802 |
| Msa0600030 | MtrunA17_Chr3g0143671 | 69.590 | 536 | 161 | 1 | 4 | 537 | 5 | 540 | 0.0 | 796 |
| Msa0600030 | MtrunA17_Chr4g0075071 | 71.887 | 530 | 146 | 1 | 7 | 536 | 14 | 540 | 0.0 | 775 |
| Msa0600030 | MtrunA17_Chr8g0374271 | 60.155 | 517 | 203 | 2 | 22 | 537 | 26 | 540 | 0.0 | 657 |
| Msa0600030 | MtrunA17_Chr5g0402831 | 61.538 | 520 | 196 | 2 | 18 | 537 | 22 | 537 | 0.0 | 653 |
| Msa0600030 | MtrunA17_Chr8g0374261 | 55.534 | 524 | 230 | 3 | 11 | 533 | 13 | 534 | 0.0 | 618 |
| Msa0600030 | MtrunA17_Chr4g0043251 | 51.948 | 539 | 247 | 5 | 4 | 531 | 1 | 538 | 0.0 | 562 |
| Msa0600030 | MtrunA17_Chr4g0043261 | 51.233 | 527 | 252 | 4 | 9 | 531 | 7 | 532 | 0.0 | 548 |
| Msa0600030 | MtrunA17_Chr3g0121151 | 51.036 | 531 | 251 | 4 | 9 | 531 | 48 | 577 | 0.0 | 543 |
| Msa0600030 | MtrunA17_Chr3g0121161 | 51.036 | 531 | 251 | 4 | 9 | 531 | 48 | 577 | 0.0 | 542 |
| Msa0600030 | MtrunA17_Chr4g0056511 | 51.750 | 543 | 241 | 6 | 10 | 532 | 10 | 551 | 0.0 | 535 |
| Msa0600030 | MtrunA17_Chr3g0079321 | 48.987 | 543 | 255 | 7 | 9 | 531 | 12 | 552 | 1.32e-177 | 513 |
| Msa0600030 | MtrunA17_Chr3g0121171 | 51.224 | 531 | 250 | 4 | 9 | 531 | 583 | 1112 | 8.83e-175 | 544 |
| Msa0600030 | MtrunA17_Chr3g0121171 | 51.036 | 531 | 251 | 4 | 9 | 531 | 1158 | 1687 | 9.01e-174 | 541 |
| Msa0600030 | MtrunA17_Chr3g0121171 | 52.510 | 518 | 237 | 4 | 22 | 531 | 21 | 537 | 1.40e-173 | 541 |
| Msa0600030 | MtrunA17_Chr3g0121171 | 49.341 | 531 | 251 | 5 | 9 | 531 | 1733 | 2253 | 3.67e-163 | 512 |
| Msa0600030 | MtrunA17_Chr7g0234061 | 49.430 | 526 | 246 | 7 | 24 | 531 | 26 | 549 | 9.64e-169 | 491 |
| Msa0600030 | MtrunA17_Chr1g0197301 | 45.152 | 330 | 178 | 3 | 205 | 531 | 1 | 330 | 3.57e-91 | 282 |
| Msa0600030 | MtrunA17_Chr4g0075781 | 56.250 | 208 | 48 | 2 | 131 | 336 | 1 | 167 | 1.30e-66 | 213 |
| Msa0600030 | MtrunA17_Chr5g0404361 | 30.466 | 558 | 342 | 19 | 10 | 530 | 63 | 611 | 1.26e-56 | 199 |
| Msa0600030 | MtrunA17_Chr3g0118321 | 28.034 | 585 | 345 | 19 | 1 | 531 | 1 | 563 | 1.81e-55 | 196 |
| Msa0600030 | MtrunA17_Chr5g0404341 | 30.255 | 509 | 302 | 18 | 23 | 490 | 30 | 526 | 4.07e-54 | 192 |
| Msa0600030 | MtrunA17_Chr8g0382691 | 28.970 | 573 | 319 | 16 | 22 | 535 | 29 | 572 | 6.55e-53 | 189 |
| Msa0600030 | MtrunA17_Chr4g0024651 | 97.590 | 83 | 2 | 0 | 1 | 83 | 1 | 83 | 6.62e-52 | 172 |
| Msa0600030 | MtrunA17_Chr5g0436461 | 29.119 | 522 | 316 | 15 | 11 | 490 | 5 | 514 | 1.15e-51 | 185 |
| Msa0600030 | MtrunA17_Chr3g0104061 | 27.188 | 537 | 352 | 13 | 27 | 530 | 26 | 556 | 3.82e-49 | 178 |
| Msa0600030 | MtrunA17_Chr1g0197311 | 40.323 | 248 | 104 | 7 | 1 | 209 | 1 | 243 | 1.03e-48 | 169 |
| Msa0600030 | MtrunA17_Chr5g0429511 | 26.502 | 566 | 372 | 15 | 1 | 530 | 1 | 558 | 3.33e-48 | 176 |
| Msa0600030 | MtrunA17_Chr3g0118331 | 28.597 | 556 | 328 | 18 | 27 | 531 | 25 | 562 | 6.96e-48 | 175 |
| Msa0600030 | MtrunA17_Chr4g0005921 | 27.799 | 518 | 327 | 15 | 13 | 490 | 7 | 517 | 7.55e-48 | 174 |
| Msa0600030 | MtrunA17_Chr5g0431581 | 27.592 | 569 | 353 | 18 | 7 | 530 | 6 | 560 | 3.16e-44 | 164 |
| Msa0600030 | MtrunA17_Chr3g0114211 | 28.215 | 521 | 330 | 16 | 8 | 490 | 16 | 530 | 5.78e-44 | 164 |
| Msa0600030 | MtrunA17_Chr8g0346581 | 26.602 | 515 | 337 | 13 | 13 | 490 | 21 | 531 | 6.60e-42 | 158 |
| Msa0600030 | MtrunA17_Chr5g0437681 | 26.894 | 528 | 336 | 15 | 8 | 490 | 5 | 527 | 9.37e-40 | 152 |
| Msa0600030 | MtrunA17_Chr7g0237441 | 26.901 | 513 | 321 | 18 | 27 | 490 | 33 | 540 | 2.16e-38 | 148 |
| Msa0600030 | MtrunA17_Chr7g0238941 | 24.607 | 573 | 378 | 15 | 3 | 530 | 15 | 578 | 3.81e-38 | 147 |
| Msa0600030 | MtrunA17_Chr7g0240991 | 26.128 | 532 | 329 | 20 | 10 | 490 | 13 | 531 | 2.74e-37 | 145 |
| Msa0600030 | MtrunA17_Chr7g0238351 | 26.848 | 514 | 321 | 17 | 27 | 490 | 33 | 541 | 4.33e-37 | 144 |
| Msa0600030 | MtrunA17_Chr7g0237491 | 26.706 | 513 | 322 | 18 | 27 | 490 | 33 | 540 | 9.08e-37 | 144 |
| Msa0600030 | MtrunA17_Chr2g0278811 | 24.618 | 589 | 370 | 16 | 11 | 530 | 24 | 607 | 4.04e-36 | 142 |
| Msa0600030 | MtrunA17_Chr7g0240971 | 25.818 | 550 | 335 | 17 | 4 | 495 | 1 | 535 | 5.48e-35 | 138 |
| Msa0600030 | MtrunA17_Chr4g0031901 | 24.903 | 518 | 343 | 14 | 15 | 490 | 32 | 545 | 1.50e-33 | 134 |
| Msa0600030 | MtrunA17_Chr7g0238981 | 24.414 | 512 | 334 | 14 | 27 | 490 | 47 | 553 | 1.79e-32 | 131 |
| Msa0600030 | MtrunA17_Chr4g0008521 | 25.532 | 517 | 328 | 17 | 29 | 495 | 28 | 537 | 4.08e-30 | 124 |
| Msa0600030 | MtrunA17_Chr3g0118351 | 24.927 | 341 | 204 | 8 | 231 | 531 | 6 | 334 | 1.48e-22 | 99.0 |
| Msa0600030 | MtrunA17_Chr3g0133871 | 29.126 | 206 | 140 | 4 | 1 | 201 | 3 | 207 | 8.63e-20 | 88.6 |
| Msa0600030 | MtrunA17_Chr3g0118341 | 36.242 | 149 | 90 | 5 | 27 | 172 | 26 | 172 | 5.65e-19 | 85.9 |
| Msa0600030 | MtrunA17_Chr3g0133861 | 28.431 | 306 | 166 | 14 | 226 | 490 | 7 | 300 | 4.08e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600030 | AT1G76160.1 | 71.132 | 530 | 152 | 1 | 7 | 536 | 8 | 536 | 0.0 | 799 |
| Msa0600030 | AT4G22010.1 | 70.577 | 537 | 155 | 2 | 2 | 537 | 3 | 537 | 0.0 | 793 |
| Msa0600030 | AT1G21850.1 | 67.608 | 531 | 170 | 2 | 7 | 537 | 9 | 537 | 0.0 | 766 |
| Msa0600030 | AT1G41830.1 | 67.736 | 530 | 170 | 1 | 8 | 537 | 10 | 538 | 0.0 | 766 |
| Msa0600030 | AT1G21860.1 | 66.226 | 530 | 177 | 2 | 8 | 537 | 10 | 537 | 0.0 | 750 |
| Msa0600030 | AT4G38420.1 | 63.433 | 536 | 190 | 3 | 8 | 537 | 11 | 546 | 0.0 | 712 |
| Msa0600030 | AT4G28090.1 | 59.848 | 528 | 208 | 4 | 9 | 533 | 11 | 537 | 0.0 | 666 |
| Msa0600030 | AT5G66920.1 | 57.308 | 520 | 220 | 1 | 18 | 537 | 28 | 545 | 0.0 | 632 |
| Msa0600030 | AT4G38420.3 | 62.208 | 471 | 172 | 3 | 8 | 472 | 11 | 481 | 0.0 | 608 |
| Msa0600030 | AT4G37160.1 | 53.717 | 538 | 240 | 3 | 4 | 533 | 1 | 537 | 0.0 | 584 |
| Msa0600030 | AT1G55570.1 | 54.815 | 540 | 229 | 5 | 10 | 535 | 7 | 545 | 0.0 | 581 |
| Msa0600030 | AT3G13400.2 | 53.989 | 539 | 239 | 4 | 5 | 535 | 5 | 542 | 0.0 | 578 |
| Msa0600030 | AT3G13400.1 | 53.989 | 539 | 239 | 4 | 5 | 535 | 5 | 542 | 0.0 | 578 |
| Msa0600030 | AT1G55560.1 | 52.876 | 539 | 245 | 4 | 5 | 535 | 4 | 541 | 0.0 | 574 |
| Msa0600030 | AT2G23630.2 | 55.899 | 517 | 227 | 1 | 17 | 533 | 25 | 540 | 0.0 | 573 |
| Msa0600030 | AT2G23630.1 | 55.899 | 517 | 227 | 1 | 17 | 533 | 20 | 535 | 0.0 | 573 |
| Msa0600030 | AT3G13390.1 | 55.939 | 522 | 220 | 4 | 23 | 535 | 24 | 544 | 0.0 | 571 |
| Msa0600030 | AT4G38420.2 | 61.937 | 444 | 163 | 3 | 8 | 445 | 11 | 454 | 0.0 | 571 |
| Msa0600030 | AT4G12420.1 | 51.376 | 545 | 243 | 7 | 8 | 531 | 5 | 548 | 0.0 | 548 |
| Msa0600030 | AT4G12420.2 | 51.376 | 545 | 243 | 7 | 8 | 531 | 5 | 548 | 0.0 | 548 |
| Msa0600030 | AT5G48450.1 | 50.187 | 534 | 251 | 9 | 12 | 532 | 13 | 544 | 0.0 | 524 |
| Msa0600030 | AT5G48450.2 | 50.187 | 534 | 251 | 9 | 12 | 532 | 13 | 544 | 0.0 | 523 |
| Msa0600030 | AT5G51480.1 | 49.621 | 528 | 245 | 8 | 24 | 531 | 25 | 551 | 4.44e-178 | 514 |
| Msa0600030 | AT1G75790.1 | 48.244 | 541 | 264 | 4 | 9 | 533 | 4 | 544 | 3.32e-177 | 511 |
| Msa0600030 | AT4G25240.2 | 49.541 | 545 | 253 | 8 | 7 | 531 | 9 | 551 | 5.54e-176 | 509 |
| Msa0600030 | AT4G25240.1 | 49.541 | 545 | 253 | 8 | 7 | 531 | 9 | 551 | 5.54e-176 | 509 |
| Msa0600030 | AT4G37160.2 | 54.889 | 450 | 194 | 3 | 4 | 445 | 1 | 449 | 7.41e-173 | 496 |
| Msa0600030 | AT4G39830.1 | 27.336 | 578 | 352 | 15 | 9 | 533 | 18 | 580 | 1.71e-55 | 196 |
| Msa0600030 | AT5G21105.1 | 27.844 | 589 | 340 | 20 | 3 | 531 | 13 | 576 | 6.58e-55 | 195 |
| Msa0600030 | AT5G21100.1 | 27.648 | 557 | 324 | 18 | 31 | 531 | 28 | 561 | 4.15e-53 | 189 |
| Msa0600030 | AT5G21105.3 | 28.571 | 546 | 310 | 19 | 3 | 488 | 13 | 538 | 6.00e-53 | 188 |
| Msa0600030 | AT5G58910.2 | 28.817 | 524 | 327 | 15 | 7 | 490 | 10 | 527 | 1.55e-51 | 185 |
| Msa0600030 | AT2G38080.1 | 27.289 | 557 | 363 | 14 | 9 | 530 | 9 | 558 | 2.18e-50 | 182 |
| Msa0600030 | AT5G58910.3 | 28.817 | 524 | 326 | 16 | 7 | 490 | 10 | 526 | 6.55e-50 | 181 |
| Msa0600030 | AT5G01190.1 | 26.455 | 567 | 355 | 18 | 9 | 530 | 9 | 558 | 1.69e-45 | 168 |
| Msa0600030 | AT2G46570.1 | 26.504 | 532 | 335 | 14 | 4 | 490 | 9 | 529 | 6.66e-45 | 167 |
| Msa0600030 | AT2G30210.1 | 28.220 | 528 | 326 | 18 | 8 | 490 | 11 | 530 | 8.32e-45 | 167 |
| Msa0600030 | AT5G58910.1 | 29.193 | 483 | 289 | 16 | 48 | 490 | 14 | 483 | 2.15e-44 | 164 |
| Msa0600030 | AT5G03260.1 | 28.200 | 500 | 311 | 16 | 29 | 490 | 28 | 517 | 2.11e-43 | 162 |
| Msa0600030 | AT5G01190.2 | 26.102 | 567 | 343 | 19 | 9 | 530 | 9 | 544 | 3.17e-42 | 159 |
| Msa0600030 | AT4G39830.2 | 27.383 | 493 | 291 | 14 | 93 | 533 | 8 | 485 | 6.06e-42 | 157 |
| Msa0600030 | AT4G39830.3 | 27.383 | 493 | 291 | 14 | 93 | 533 | 6 | 483 | 6.11e-42 | 157 |
| Msa0600030 | AT1G18140.1 | 26.779 | 534 | 310 | 18 | 27 | 495 | 29 | 546 | 2.93e-39 | 151 |
| Msa0600030 | AT5G01050.1 | 27.206 | 544 | 335 | 18 | 38 | 532 | 39 | 570 | 6.86e-39 | 150 |
| Msa0600030 | AT5G01040.1 | 27.477 | 535 | 326 | 18 | 3 | 490 | 7 | 526 | 1.44e-37 | 146 |
| Msa0600030 | AT4G39830.4 | 26.572 | 493 | 282 | 14 | 93 | 533 | 8 | 472 | 2.26e-37 | 144 |
| Msa0600030 | AT5G07130.1 | 26.981 | 530 | 329 | 19 | 10 | 490 | 9 | 529 | 6.37e-37 | 144 |
| Msa0600030 | AT5G05390.1 | 24.858 | 527 | 357 | 12 | 1 | 490 | 1 | 525 | 7.78e-37 | 144 |
| Msa0600030 | AT2G29130.1 | 25.709 | 529 | 340 | 16 | 11 | 490 | 9 | 533 | 7.81e-37 | 144 |
| Msa0600030 | AT5G09360.1 | 23.837 | 516 | 357 | 12 | 8 | 490 | 17 | 529 | 3.09e-36 | 142 |
| Msa0600030 | AT2G40370.1 | 25.468 | 534 | 339 | 15 | 9 | 490 | 14 | 540 | 4.28e-36 | 142 |
| Msa0600030 | AT5G48100.1 | 27.607 | 489 | 300 | 16 | 48 | 490 | 43 | 523 | 1.79e-35 | 140 |
| Msa0600030 | AT3G09220.1 | 25.427 | 527 | 341 | 15 | 7 | 490 | 10 | 527 | 1.91e-35 | 140 |
| Msa0600030 | AT2G46570.2 | 26.549 | 452 | 276 | 14 | 84 | 490 | 4 | 444 | 7.48e-35 | 137 |
| Msa0600030 | AT5G21105.2 | 28.249 | 354 | 206 | 11 | 205 | 531 | 53 | 385 | 4.29e-32 | 128 |
| Msa0600030 | AT5G60020.1 | 22.664 | 578 | 385 | 16 | 10 | 530 | 5 | 577 | 1.78e-30 | 125 |
| Msa0600030 | AT5G60020.3 | 22.905 | 537 | 355 | 15 | 48 | 530 | 14 | 545 | 2.48e-29 | 122 |
| Msa0600030 | AT5G60020.2 | 23.260 | 546 | 357 | 16 | 10 | 498 | 5 | 545 | 2.54e-29 | 122 |
| Msa0600030 | AT5G07130.2 | 26.444 | 450 | 275 | 18 | 90 | 490 | 2 | 444 | 2.58e-23 | 103 |
| Msa0600030 | AT5G07130.3 | 26.444 | 450 | 275 | 18 | 90 | 490 | 2 | 444 | 2.58e-23 | 103 |
| Msa0600030 | AT3G09220.2 | 25.116 | 430 | 281 | 12 | 100 | 490 | 3 | 430 | 5.32e-23 | 102 |
Find 157 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTGCTGGAAGTGTTTC+TGG | 0.146839 | 4_2:+40819683 | Msa0600030:CDS |
| AATTCTGCTCCAATTATTAA+TGG | 0.182299 | 4_2:+40820518 | Msa0600030:CDS |
| CAAGCTTATTTATATGTCTA+AGG | 0.265165 | 4_2:+40821750 | Msa0600030:three_prime_UTR |
| ATGAACCTTTCCTCATTTCT+TGG | 0.290193 | 4_2:+40817796 | Msa0600030:CDS |
| TGGTAGGTTCCTTGTGGATT+TGG | 0.297781 | 4_2:-40820455 | None:intergenic |
| GACTCACTTGACATTCATTT+GGG | 0.313425 | 4_2:+40819545 | Msa0600030:CDS |
| CCACAAGGAACCTACCATTA+TGG | 0.317959 | 4_2:+40820461 | Msa0600030:CDS |
| CCGCCACCGGTGGGGTTGTC+CGG | 0.319670 | 4_2:-40820647 | None:intergenic |
| GTACCAATCTCCTGCCAATA+TGG | 0.320758 | 4_2:-40818819 | None:intergenic |
| TGACTCACTTGACATTCATT+TGG | 0.322743 | 4_2:+40819544 | Msa0600030:CDS |
| CAGGGAAGACTTACAGATTC+CGG | 0.326068 | 4_2:+40819420 | Msa0600030:intron |
| CACAAGGCAGCAGGAGGTTA+TGG | 0.332098 | 4_2:+40818731 | Msa0600030:CDS |
| ATGGTAAATTTGTTTGGTTT+TGG | 0.332967 | 4_2:+40817289 | Msa0600030:five_prime_UTR |
| AATACACTCTAAGATAAAAT+TGG | 0.334224 | 4_2:-40821453 | None:intergenic |
| CAAATGGAGAAGATCCTTAT+AGG | 0.337572 | 4_2:+40817416 | Msa0600030:CDS |
| TTGATAAATGGACAATTTCC+AGG | 0.349584 | 4_2:+40817714 | Msa0600030:CDS |
| GTTCCTTGTGGATTTGGTCT+TGG | 0.355975 | 4_2:-40820449 | None:intergenic |
| TGAATAGACTCTATTCATCT+TGG | 0.356080 | 4_2:-40821604 | None:intergenic |
| TTCCAATTATAAAACCTATA+AGG | 0.362434 | 4_2:-40817430 | None:intergenic |
| CTCCACAAAACCTCGAAAAT+CGG | 0.365811 | 4_2:-40820699 | None:intergenic |
| TTGCAATCATGGCACATTGA+TGG | 0.375745 | 4_2:+40820749 | Msa0600030:CDS |
| CATGATTGCAAAGTGTCTTC+AGG | 0.375827 | 4_2:-40820737 | None:intergenic |
| TATAATTGGAATGTTACATA+TGG | 0.378868 | 4_2:+40817442 | Msa0600030:CDS |
| AAACACTTTATTAAAAGAAT+AGG | 0.384825 | 4_2:+40821676 | Msa0600030:three_prime_UTR |
| TGAAGTGCATTGCTTGGAAT+AGG | 0.394371 | 4_2:-40821505 | None:intergenic |
| CTGAAGACACTTTGCAATCA+TGG | 0.394639 | 4_2:+40820738 | Msa0600030:CDS |
| TTGAACAAGCTCGCTCTCTA+AGG | 0.396269 | 4_2:+40819747 | Msa0600030:CDS |
| CAAGCTTCATCTTATGCCCT+TGG | 0.398188 | 4_2:-40819484 | None:intergenic |
| GTTTCTGGTCCTCTTCCTGC+TGG | 0.399456 | 4_2:+40819698 | Msa0600030:CDS |
| TCATCTCTCACTGAATTTGC+AGG | 0.400229 | 4_2:-40821478 | None:intergenic |
| GAATAGACTCTATTCATCTT+GGG | 0.406100 | 4_2:-40821603 | None:intergenic |
| GGACATAGCTTCTTTGTAGT+AGG | 0.408807 | 4_2:+40820770 | Msa0600030:CDS |
| GAATTGGGCAAGACAGTACT+TGG | 0.414940 | 4_2:+40821426 | Msa0600030:CDS |
| CTTGCATTTCACAAGGCAGC+AGG | 0.433357 | 4_2:+40818722 | Msa0600030:CDS |
| ATCCGGAGATTACACCATAT+TGG | 0.446297 | 4_2:+40818805 | Msa0600030:CDS |
| GGGGCAGACGTATTCTGTAT+TGG | 0.447694 | 4_2:+40819565 | Msa0600030:CDS |
| CCCTTGGATTCTGAAATTGA+TGG | 0.448632 | 4_2:-40819468 | None:intergenic |
| GGAATGTGAGGTCTGAGAAT+TGG | 0.449805 | 4_2:+40821410 | Msa0600030:CDS |
| GAAGTGCATTGCTTGGAATA+GGG | 0.450911 | 4_2:-40821504 | None:intergenic |
| AAGTTCTGTCCTGGAGAGAT+TGG | 0.452707 | 4_2:-40818644 | None:intergenic |
| CGCCACCGGTGGGGTTGTCC+GGG | 0.453611 | 4_2:-40820646 | None:intergenic |
| TTGTGTTTATCATTCCATAA+TGG | 0.454708 | 4_2:-40820475 | None:intergenic |
| GAATGTGAGGTCTGAGAATT+GGG | 0.454791 | 4_2:+40821411 | Msa0600030:CDS |
| ACACCATATTGGCAGGAGAT+TGG | 0.455774 | 4_2:+40818816 | Msa0600030:CDS |
| CCATTGATGACAAGTCCATC+AGG | 0.456809 | 4_2:-40818980 | None:intergenic |
| TTCCTTGTTGCATGTGCAAA+TGG | 0.460618 | 4_2:+40817400 | Msa0600030:CDS |
| AGTGATCTTCCTTTCCCTGA+TGG | 0.460805 | 4_2:+40818965 | Msa0600030:CDS |
| ATTTCAGTGGTTGGTCCAGC+AGG | 0.462597 | 4_2:-40819713 | None:intergenic |
| CCGGACAACCCCACCGGTGG+CGG | 0.466606 | 4_2:+40820647 | Msa0600030:CDS |
| AAGTGCATGGTAAATTTGTT+TGG | 0.467441 | 4_2:+40817283 | Msa0600030:five_prime_UTR |
| ACTGACTCAATCTGTGGCCC+TGG | 0.467858 | 4_2:-40817732 | None:intergenic |
| CCTGATGGACTTGTCATCAA+TGG | 0.468702 | 4_2:+40818980 | Msa0600030:CDS |
| CCACACTGAAGTGCATTGCT+TGG | 0.471125 | 4_2:-40821511 | None:intergenic |
| TCCACTTGGAGTTAAACAAC+AGG | 0.471870 | 4_2:+40817474 | Msa0600030:CDS |
| TACAGTGCAGTCCATGACTT+TGG | 0.473369 | 4_2:-40821361 | None:intergenic |
| TCATGGCAGGATGGAGTGTA+TGG | 0.474062 | 4_2:+40818611 | Msa0600030:CDS |
| TACACATTCACTGTTGATCA+AGG | 0.474298 | 4_2:+40819019 | Msa0600030:CDS |
| GACAACCCCACCGGTGGCGG+CGG | 0.483320 | 4_2:+40820650 | Msa0600030:CDS |
| TAATCCCCACATTTGATATC+CGG | 0.487792 | 4_2:-40819439 | None:intergenic |
| TCTCCGGATGGAGGATCAAA+AGG | 0.489579 | 4_2:-40818791 | None:intergenic |
| CTTCATTACAGTAACTCTGC+TGG | 0.493285 | 4_2:+40819671 | Msa0600030:CDS |
| ATCACTTCCGCTATCTAAAA+CGG | 0.493695 | 4_2:-40818948 | None:intergenic |
| ATGAAGCTTGTTGAGGTGGA+AGG | 0.497246 | 4_2:+40819497 | Msa0600030:CDS |
| AGTTTGAGTGGTGTATCAGC+AGG | 0.498988 | 4_2:-40820578 | None:intergenic |
| CACAACAAGGTTCACGTCAC+AGG | 0.499799 | 4_2:+40819628 | Msa0600030:CDS |
| TGTTCAAATTCTAAAGCAAA+AGG | 0.499877 | 4_2:+40817191 | Msa0600030:five_prime_UTR |
| ACAATGTTCTGTCTTGTTGT+TGG | 0.500281 | 4_2:+40817372 | Msa0600030:CDS |
| AATTGCTCGTAGTACAGTTC+AGG | 0.508901 | 4_2:+40821059 | Msa0600030:CDS |
| AACAGTGAATGTGTAAGCAT+TGG | 0.510570 | 4_2:-40819011 | None:intergenic |
| ACAACAATGTAGTAGTCATT+TGG | 0.512474 | 4_2:-40819605 | None:intergenic |
| AGTTGTCATTTGAGTTGAAG+AGG | 0.513050 | 4_2:+40817318 | Msa0600030:five_prime_UTR |
| GACATAGCTTCTTTGTAGTA+GGG | 0.514001 | 4_2:+40820771 | Msa0600030:CDS |
| ATTGGAATTTGCAGGATGGA+TGG | 0.516169 | 4_2:+40820988 | Msa0600030:intron |
| AGAAGTCAAAATGAATATCC+TGG | 0.517094 | 4_2:-40821572 | None:intergenic |
| ACCTGTTGTTTAACTCCAAG+TGG | 0.517766 | 4_2:-40817475 | None:intergenic |
| CTTCAAGTAAAAGATCAGAT+TGG | 0.518189 | 4_2:+40818677 | Msa0600030:CDS |
| AGAGTTACTGTAATGAAGAA+TGG | 0.523401 | 4_2:-40819666 | None:intergenic |
| ATATAAGTGAAGTTCTGTCC+TGG | 0.525875 | 4_2:-40818653 | None:intergenic |
| TCCATCAATTTCAGAATCCA+AGG | 0.526236 | 4_2:+40819467 | Msa0600030:CDS |
| TGAAGAATGGATGAAGCATT+CGG | 0.526999 | 4_2:-40819653 | None:intergenic |
| ACTTCAGTGTGGCAAGGCAG+TGG | 0.529238 | 4_2:+40821522 | Msa0600030:CDS |
| ACAAATTGTCCAATCTCTCC+AGG | 0.532559 | 4_2:+40818635 | Msa0600030:CDS |
| TGCCAATATGGTGTAATCTC+CGG | 0.534303 | 4_2:-40818807 | None:intergenic |
| GACTGCACTGTACATGCCAT+TGG | 0.535391 | 4_2:+40821372 | Msa0600030:CDS |
| AAGATAACCGCCGCCACCGG+TGG | 0.541603 | 4_2:-40820657 | None:intergenic |
| GTTTATCATTCCATAATGGT+AGG | 0.542317 | 4_2:-40820471 | None:intergenic |
| AAAAGGTAAAAGAAAAGTGT+AGG | 0.542903 | 4_2:+40817208 | Msa0600030:five_prime_UTR |
| TATGGAGATATTTATCCACT+TGG | 0.549980 | 4_2:+40817460 | Msa0600030:CDS |
| AATATTGAATTGAAAGTGCA+TGG | 0.550776 | 4_2:+40817270 | Msa0600030:five_prime_UTR |
| GGAGATTACACCATATTGGC+AGG | 0.551378 | 4_2:+40818809 | Msa0600030:CDS |
| CAGATTCCGGATATCAAATG+TGG | 0.551399 | 4_2:+40819433 | Msa0600030:CDS |
| CTTCAGTGTGGCAAGGCAGT+GGG | 0.552136 | 4_2:+40821523 | Msa0600030:CDS |
| CTGATTACTTCAAGATCCAA+GGG | 0.552515 | 4_2:+40820603 | Msa0600030:CDS |
| AGATAACCGCCGCCACCGGT+GGG | 0.552834 | 4_2:-40820656 | None:intergenic |
| GTGGTTGGTCCAGCAGGAAG+AGG | 0.553379 | 4_2:-40819707 | None:intergenic |
| TTATCTTCAGACTTCTGTCA+TGG | 0.553926 | 4_2:+40820673 | Msa0600030:CDS |
| CCATAATGGTAGGTTCCTTG+TGG | 0.554362 | 4_2:-40820461 | None:intergenic |
| TTCCAAGTGAAAACACCCCT+TGG | 0.556437 | 4_2:-40820619 | None:intergenic |
| GACCAACCACTGAAATCGAT+TGG | 0.557851 | 4_2:+40819720 | Msa0600030:CDS |
| CTGAAGATAACCGCCGCCAC+CGG | 0.560760 | 4_2:-40820660 | None:intergenic |
| AGGAGGAATCTTACAGCAAG+TGG | 0.561277 | 4_2:+40820425 | Msa0600030:intron |
| ACACTCTAAGATAAAATTGG+TGG | 0.562579 | 4_2:-40821450 | None:intergenic |
| GCTGATTACTTCAAGATCCA+AGG | 0.566624 | 4_2:+40820602 | Msa0600030:CDS |
| ATCAAAAGGTACGGGAATCA+CGG | 0.567091 | 4_2:-40818777 | None:intergenic |
| CACATTCCCACATTATCCAA+TGG | 0.568508 | 4_2:-40821388 | None:intergenic |
| AGTATCCCGGACAACCCCAC+CGG | 0.569660 | 4_2:+40820641 | Msa0600030:CDS |
| TGATAAATGGACAATTTCCA+GGG | 0.570857 | 4_2:+40817715 | Msa0600030:CDS |
| GATGGAGGATCAAAAGGTAC+GGG | 0.571707 | 4_2:-40818785 | None:intergenic |
| TAAGATGAAGCTTGTTGAGG+TGG | 0.574215 | 4_2:+40819493 | Msa0600030:CDS |
| CACAGGTGTATCCAAAGTCA+TGG | 0.575020 | 4_2:+40821350 | Msa0600030:intron |
| GGATGGAGGATCAAAAGGTA+CGG | 0.575105 | 4_2:-40818786 | None:intergenic |
| ACAATGTAGTAGTCATTTGG+TGG | 0.577035 | 4_2:-40819602 | None:intergenic |
| GCAGAGGAGAAACTCATGGC+AGG | 0.580251 | 4_2:+40818598 | Msa0600030:CDS |
| CTCCATTTGCACATGCAACA+AGG | 0.580472 | 4_2:-40817402 | None:intergenic |
| GATTCTGAAATTGATGGATG+TGG | 0.586463 | 4_2:-40819462 | None:intergenic |
| AAGTAATCAGCTAGTTTGAG+TGG | 0.592921 | 4_2:-40820590 | None:intergenic |
| GACCAATCGATTTCAGTGGT+TGG | 0.598810 | 4_2:-40819722 | None:intergenic |
| ATGTGGGAATGTGGAATGTG+AGG | 0.600216 | 4_2:+40821398 | Msa0600030:CDS |
| ATAGGAATGGAGTGCTGCAG+AGG | 0.601936 | 4_2:+40818582 | Msa0600030:intron |
| AGGAGAAACTCATGGCAGGA+TGG | 0.603685 | 4_2:+40818602 | Msa0600030:CDS |
| ACAAGACTAACCAAGAAATG+AGG | 0.605612 | 4_2:-40817806 | None:intergenic |
| AGATTCCGGATATCAAATGT+GGG | 0.607158 | 4_2:+40819434 | Msa0600030:CDS |
| ATGACAAGTCCATCAGGGAA+AGG | 0.607922 | 4_2:-40818974 | None:intergenic |
| ACTACATTGTTGTCACAACA+AGG | 0.609823 | 4_2:+40819615 | Msa0600030:CDS |
| GGAATTTGCAGGATGGATGG+AGG | 0.610007 | 4_2:+40820991 | Msa0600030:intron |
| GATAACCGCCGCCACCGGTG+GGG | 0.610031 | 4_2:-40820655 | None:intergenic |
| ATCCCGGACAACCCCACCGG+TGG | 0.615788 | 4_2:+40820644 | Msa0600030:CDS |
| AACGGACCAATCGATTTCAG+TGG | 0.617391 | 4_2:-40819726 | None:intergenic |
| CAATGCACTTCAGTGTGGCA+AGG | 0.617833 | 4_2:+40821516 | Msa0600030:CDS |
| TGCTGCAGAGGAGAAACTCA+TGG | 0.618620 | 4_2:+40818594 | Msa0600030:CDS |
| GCATTTCACAAGGCAGCAGG+AGG | 0.618965 | 4_2:+40818725 | Msa0600030:CDS |
| GTACATGCCATTGGATAATG+TGG | 0.618969 | 4_2:+40821381 | Msa0600030:CDS |
| GGACTTGTCATCAATGGCCG+CGG | 0.620003 | 4_2:+40818986 | Msa0600030:CDS |
| TCCTTCGCTTGCATTTCACA+AGG | 0.628311 | 4_2:+40818715 | Msa0600030:CDS |
| CATTGATGACAAGTCCATCA+GGG | 0.632768 | 4_2:-40818979 | None:intergenic |
| TAGAGAGCGAGCTTGTTCAA+CGG | 0.637365 | 4_2:-40819744 | None:intergenic |
| ACTAACCAAGAAATGAGGAA+AGG | 0.643027 | 4_2:-40817801 | None:intergenic |
| GCCTTGTGAAATGCAAGCGA+AGG | 0.646133 | 4_2:-40818716 | None:intergenic |
| GCATAAGATGAAGCTTGTTG+AGG | 0.650000 | 4_2:+40819490 | Msa0600030:CDS |
| TTAGTCACTGACTCAATCTG+TGG | 0.650612 | 4_2:-40817738 | None:intergenic |
| CCATCAATTTCAGAATCCAA+GGG | 0.653636 | 4_2:+40819468 | Msa0600030:CDS |
| ATGGTGTAATCTCCGGATGG+AGG | 0.654029 | 4_2:-40818800 | None:intergenic |
| GCAGGATGGATGGAGGACAA+TGG | 0.655581 | 4_2:+40820998 | Msa0600030:intron |
| ATGTGTAAGCATTGGAACCG+CGG | 0.655680 | 4_2:-40819003 | None:intergenic |
| AAGGCAGCAGGAGGTTATGG+CGG | 0.659210 | 4_2:+40818734 | Msa0600030:CDS |
| GTATTCTGTATTGGTTACTG+CGG | 0.660650 | 4_2:+40819574 | Msa0600030:CDS |
| GTTTGAGTGGTGTATCAGCA+GGG | 0.670319 | 4_2:-40820577 | None:intergenic |
| AATATGGTGTAATCTCCGGA+TGG | 0.671667 | 4_2:-40818803 | None:intergenic |
| CATTGGATAATGTGGGAATG+TGG | 0.674160 | 4_2:+40821389 | Msa0600030:CDS |
| AATTGGGCAAGACAGTACTT+GGG | 0.674927 | 4_2:+40821427 | Msa0600030:CDS |
| TCTTCAGACTTCTGTCATGG+CGG | 0.691399 | 4_2:+40820676 | Msa0600030:CDS |
| CCAAGCAATGCACTTCAGTG+TGG | 0.697000 | 4_2:+40821511 | Msa0600030:CDS |
| GATTCCGGATATCAAATGTG+GGG | 0.700602 | 4_2:+40819435 | Msa0600030:CDS |
| ACTCACTTGACATTCATTTG+GGG | 0.703591 | 4_2:+40819546 | Msa0600030:CDS |
| GGACCAAGACCAAATCCACA+AGG | 0.716812 | 4_2:+40820446 | Msa0600030:CDS |
| TACATGCCATTGGATAATGT+GGG | 0.717897 | 4_2:+40821382 | Msa0600030:CDS |
| TGATTACTTCAAGATCCAAG+GGG | 0.751364 | 4_2:+40820604 | Msa0600030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAAAATACTAATTG+TGG | - | chr4_2:40821552-40821571 | None:intergenic | 10.0% |
| !! | TCTTTCTTATAAATGAAATT+TGG | + | chr4_2:40817607-40817626 | Msa0600030:intron | 15.0% |
| !! | TTCATATATTCATTTCTATA+TGG | + | chr4_2:40817669-40817688 | Msa0600030:intron | 15.0% |
| !!! | TGCTTTTTTTTTTTTTTTGA+AGG | + | chr4_2:40818092-40818111 | Msa0600030:intron | 15.0% |
| !!! | TTGTTATTTACTTATTTGTT+TGG | - | chr4_2:40818483-40818502 | None:intergenic | 15.0% |
| !! | AATAAGTAAATAACAATATC+AGG | + | chr4_2:40818487-40818506 | Msa0600030:intron | 15.0% |
| !! | TTTAGATTATGTAATTCTAT+AGG | + | chr4_2:40818564-40818583 | Msa0600030:intron | 15.0% |
| !! | AAAATAAATCTATTAGAATG+AGG | + | chr4_2:40819340-40819359 | Msa0600030:intron | 15.0% |
| !! | AAATAAATCTATTAGAATGA+GGG | + | chr4_2:40819341-40819360 | Msa0600030:intron | 15.0% |
| !!! | TAATATTTTTTTTTTTCCGA+TGG | + | chr4_2:40819841-40819860 | Msa0600030:intron | 15.0% |
| !!! | ATTAGTATTTTTATTTAACC+AGG | + | chr4_2:40821554-40821573 | Msa0600030:exon | 15.0% |
| !! | AAACACTTTATTAAAAGAAT+AGG | + | chr4_2:40821676-40821695 | Msa0600030:three_prime_UTR | 15.0% |
| !!! | ATCCTTATAGGTTTTATAAT+TGG | + | chr4_2:40817428-40817447 | Msa0600030:CDS | 20.0% |
| !! | TTCCAATTATAAAACCTATA+AGG | - | chr4_2:40817433-40817452 | None:intergenic | 20.0% |
| !! | TATAATTGGAATGTTACATA+TGG | + | chr4_2:40817442-40817461 | Msa0600030:CDS | 20.0% |
| !! | ATGTTTCTTCAAATTATTAG+CGG | + | chr4_2:40817630-40817649 | Msa0600030:intron | 20.0% |
| !!! | TATCAATGTTTTTAATAGCT+TGG | + | chr4_2:40817773-40817792 | Msa0600030:CDS | 20.0% |
| !! | TCGAAATTCAAAGATTAAAT+TGG | - | chr4_2:40818004-40818023 | None:intergenic | 20.0% |
| !!! | TATTAGTGTTGTTAGTATTT+TGG | - | chr4_2:40818150-40818169 | None:intergenic | 20.0% |
| !! | ACAACACTAATATTTATTTC+TGG | + | chr4_2:40818158-40818177 | Msa0600030:intron | 20.0% |
| !!! | AATTTAGTCTTTAAAATCAG+AGG | - | chr4_2:40818411-40818430 | None:intergenic | 20.0% |
| !!! | TCTGATTTTAAAGACTAAAT+TGG | + | chr4_2:40818410-40818429 | Msa0600030:intron | 20.0% |
| !! | ATTATGTAATTCTATAGGAA+TGG | + | chr4_2:40818569-40818588 | Msa0600030:intron | 20.0% |
| !!! | TTAATTTGTGTTTATTTTGC+AGG | + | chr4_2:40818916-40818935 | Msa0600030:intron | 20.0% |
| !! | ATATAAATTACTGCACATAT+CGG | + | chr4_2:40820310-40820329 | Msa0600030:intron | 20.0% |
| !! | AACAAATGATTAATTGAATC+AGG | + | chr4_2:40820405-40820424 | Msa0600030:intron | 20.0% |
| !!! | CTTTGTTTTCCATTAATAAT+TGG | - | chr4_2:40820530-40820549 | None:intergenic | 20.0% |
| !!! | TCTAAAGTAACAAATAGTTT+GGG | - | chr4_2:40820920-40820939 | None:intergenic | 20.0% |
| !!! | TTCTAAAGTAACAAATAGTT+TGG | - | chr4_2:40820921-40820940 | None:intergenic | 20.0% |
| !!! | TATTTTCCATTCTGATAATA+TGG | + | chr4_2:40820959-40820978 | Msa0600030:intron | 20.0% |
| !! | AAATATCCATATTATCAGAA+TGG | - | chr4_2:40820968-40820987 | None:intergenic | 20.0% |
| !! | CTGATAATATGGATATTTAT+TGG | + | chr4_2:40820970-40820989 | Msa0600030:intron | 20.0% |
| !! | AAAATATGAATGAGTATTAG+AGG | - | chr4_2:40821215-40821234 | None:intergenic | 20.0% |
| !!! | CATATTACTGATAATCATTT+TGG | + | chr4_2:40821287-40821306 | Msa0600030:intron | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | - | chr4_2:40821456-40821475 | None:intergenic | 20.0% |
| !!! | GAGTTTTCTAATATATAATG+TGG | + | chr4_2:40821709-40821728 | Msa0600030:three_prime_UTR | 20.0% |
| !!! | TGTTCAAATTCTAAAGCAAA+AGG | + | chr4_2:40817191-40817210 | Msa0600030:five_prime_UTR | 25.0% |
| !! | AAAAGGTAAAAGAAAAGTGT+AGG | + | chr4_2:40817208-40817227 | Msa0600030:five_prime_UTR | 25.0% |
| !! | AATATTGAATTGAAAGTGCA+TGG | + | chr4_2:40817270-40817289 | Msa0600030:five_prime_UTR | 25.0% |
| !!! | ATGGTAAATTTGTTTGGTTT+TGG | + | chr4_2:40817289-40817308 | Msa0600030:five_prime_UTR | 25.0% |
| ! | GTGAGAAAAAACTGAAAAAT+GGG | + | chr4_2:40817340-40817359 | Msa0600030:exon | 25.0% |
| !!! | TTCCTTTTTTTTTGAAGAAG+AGG | + | chr4_2:40817506-40817525 | Msa0600030:intron | 25.0% |
| ! | TACCTCTTCTTCAAAAAAAA+AGG | - | chr4_2:40817511-40817530 | None:intergenic | 25.0% |
| ! | CAATAAATTGTGCTAAAAAG+AGG | - | chr4_2:40817903-40817922 | None:intergenic | 25.0% |
| !!! | CTCTTTTTAGCACAATTTAT+TGG | + | chr4_2:40817901-40817920 | Msa0600030:intron | 25.0% |
| ! | ATTTATTGGAGTGAATTGTA+TGG | + | chr4_2:40817915-40817934 | Msa0600030:intron | 25.0% |
| !!! | TAGATAATTTTGAAAACAGC+TGG | + | chr4_2:40817953-40817972 | Msa0600030:intron | 25.0% |
| ! | TTTGAATTTCGACTTAATCT+CGG | + | chr4_2:40818012-40818031 | Msa0600030:intron | 25.0% |
| !!! | GTTGTTAGTATTTTGGTTTA+AGG | - | chr4_2:40818143-40818162 | None:intergenic | 25.0% |
| !!! | AGACCAGATTAATTTGTTTA+TGG | - | chr4_2:40818218-40818237 | None:intergenic | 25.0% |
| !!! | GATTTTAAAGACTAAATTGG+TGG | + | chr4_2:40818413-40818432 | Msa0600030:intron | 25.0% |
| ! | CAAGATTTCTTAAACATTGA+AGG | - | chr4_2:40818883-40818902 | None:intergenic | 25.0% |
| !! | CAAATTTCAGGTAAACAAAT+TGG | - | chr4_2:40819061-40819080 | None:intergenic | 25.0% |
| ! | GTAGTCATACAAAACAAAAT+CGG | - | chr4_2:40819102-40819121 | None:intergenic | 25.0% |
| !! | TGTTTTGTATGACTACTAAT+CGG | + | chr4_2:40819106-40819125 | Msa0600030:intron | 25.0% |
| ! | ATTATTTGTATCGAGAAAAG+CGG | - | chr4_2:40819257-40819276 | None:intergenic | 25.0% |
| !! | ATGCATTGACATAATTTGAT+TGG | + | chr4_2:40819995-40820014 | Msa0600030:intron | 25.0% |
| !!! | AGTTTGCTTACTTTTCATTT+CGG | - | chr4_2:40820196-40820215 | None:intergenic | 25.0% |
| ! | AAAGTAAGCAAACTAATTCA+TGG | + | chr4_2:40820202-40820221 | Msa0600030:intron | 25.0% |
| ! | AAACTAATTCATGGTAGTTA+AGG | + | chr4_2:40820211-40820230 | Msa0600030:intron | 25.0% |
| ! | ATTTCGAAGAAAAAAATCGT+TGG | + | chr4_2:40820263-40820282 | Msa0600030:intron | 25.0% |
| ! | AAATGATTAATTGAATCAGG+AGG | + | chr4_2:40820408-40820427 | Msa0600030:intron | 25.0% |
| ! | TTGTGTTTATCATTCCATAA+TGG | - | chr4_2:40820478-40820497 | None:intergenic | 25.0% |
| ! | AATTCTGCTCCAATTATTAA+TGG | + | chr4_2:40820518-40820537 | Msa0600030:CDS | 25.0% |
| ! | AATATTTATAAGGGAACCTT+TGG | + | chr4_2:40821145-40821164 | Msa0600030:intron | 25.0% |
| ! | CATCATAAATCATATGTCAA+TGG | - | chr4_2:40821190-40821209 | None:intergenic | 25.0% |
| !! | TTTGGTCTTTAACATGATTA+AGG | + | chr4_2:40821305-40821324 | Msa0600030:intron | 25.0% |
| !! | TTGGTCTTTAACATGATTAA+GGG | + | chr4_2:40821306-40821325 | Msa0600030:intron | 25.0% |
| ! | CAAGCTTATTTATATGTCTA+AGG | + | chr4_2:40821750-40821769 | Msa0600030:three_prime_UTR | 25.0% |
| ! | AAGTGCATGGTAAATTTGTT+TGG | + | chr4_2:40817283-40817302 | Msa0600030:five_prime_UTR | 30.0% |
| GGTGAGAAAAAACTGAAAAA+TGG | + | chr4_2:40817339-40817358 | Msa0600030:exon | 30.0% | |
| TATGGAGATATTTATCCACT+TGG | + | chr4_2:40817460-40817479 | Msa0600030:CDS | 30.0% | |
| TTGATAAATGGACAATTTCC+AGG | + | chr4_2:40817714-40817733 | Msa0600030:CDS | 30.0% | |
| TGATAAATGGACAATTTCCA+GGG | + | chr4_2:40817715-40817734 | Msa0600030:CDS | 30.0% | |
| ! | TTGTTTCTTGTTTATTCCAC+TGG | + | chr4_2:40817825-40817844 | Msa0600030:intron | 30.0% |
| !! | TATTTATTTCTGGAGAGCAT+TGG | + | chr4_2:40818168-40818187 | Msa0600030:intron | 30.0% |
| TGCCCTTAAGAATATATTGA+CGG | + | chr4_2:40818191-40818210 | Msa0600030:intron | 30.0% | |
| GACCGTCAATATATTCTTAA+GGG | - | chr4_2:40818196-40818215 | None:intergenic | 30.0% | |
| GGTCCATAAACAAATTAATC+TGG | + | chr4_2:40818212-40818231 | Msa0600030:intron | 30.0% | |
| TTCGTCGAAATTATTTGAGA+GGG | - | chr4_2:40818291-40818310 | None:intergenic | 30.0% | |
| ATTCGTCGAAATTATTTGAG+AGG | - | chr4_2:40818292-40818311 | None:intergenic | 30.0% | |
| !! | TCTTTAAAATCAGAGGTGTT+AGG | - | chr4_2:40818404-40818423 | None:intergenic | 30.0% |
| ! | CACTGAATTTTCAACATGTA+TGG | - | chr4_2:40818542-40818561 | None:intergenic | 30.0% |
| CTTCAAGTAAAAGATCAGAT+TGG | + | chr4_2:40818677-40818696 | Msa0600030:CDS | 30.0% | |
| !!! | TGTTTATTTTGCAGGATTTG+AGG | + | chr4_2:40818924-40818943 | Msa0600030:intron | 30.0% |
| !!! | GTTTATTTTGCAGGATTTGA+GGG | + | chr4_2:40818925-40818944 | Msa0600030:intron | 30.0% |
| ! | GTTGTTAGATATGTTTTCGA+GGG | + | chr4_2:40819128-40819147 | Msa0600030:intron | 30.0% |
| AGTAGTTAACTAATATCAGC+TGG | - | chr4_2:40819201-40819220 | None:intergenic | 30.0% | |
| TTATTTGTATCGAGAAAAGC+GGG | - | chr4_2:40819256-40819275 | None:intergenic | 30.0% | |
| TAAATCTATTAGAATGAGGG+CGG | + | chr4_2:40819344-40819363 | Msa0600030:intron | 30.0% | |
| ACAACAATGTAGTAGTCATT+TGG | - | chr4_2:40819608-40819627 | None:intergenic | 30.0% | |
| AGAGTTACTGTAATGAAGAA+TGG | - | chr4_2:40819669-40819688 | None:intergenic | 30.0% | |
| CGAATTCAATTCTTATCCAT+CGG | - | chr4_2:40819860-40819879 | None:intergenic | 30.0% | |
| CGATGGATAAGAATTGAATT+CGG | + | chr4_2:40819858-40819877 | Msa0600030:intron | 30.0% | |
| ! | TCATTTGTTAAAGTCAGCAT+GGG | - | chr4_2:40820394-40820413 | None:intergenic | 30.0% |
| ! | ATCATTTGTTAAAGTCAGCA+TGG | - | chr4_2:40820395-40820414 | None:intergenic | 30.0% |
| GTTTATCATTCCATAATGGT+AGG | - | chr4_2:40820474-40820493 | None:intergenic | 30.0% | |
| GGATATTTATTGGAATTTGC+AGG | + | chr4_2:40820980-40820999 | Msa0600030:intron | 30.0% | |
| ATTTATTGGAATTTGCAGGA+TGG | + | chr4_2:40820984-40821003 | Msa0600030:intron | 30.0% | |
| TCTTTCTATGTTTCTTACAC+AGG | + | chr4_2:40821333-40821352 | Msa0600030:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | - | chr4_2:40821453-40821472 | None:intergenic | 30.0% |
| AGAAGTCAAAATGAATATCC+TGG | - | chr4_2:40821575-40821594 | None:intergenic | 30.0% | |
| GAATAGACTCTATTCATCTT+GGG | - | chr4_2:40821606-40821625 | None:intergenic | 30.0% | |
| TGAATAGACTCTATTCATCT+TGG | - | chr4_2:40821607-40821626 | None:intergenic | 30.0% | |
| !! | AGTTGTCATTTGAGTTGAAG+AGG | + | chr4_2:40817318-40817337 | Msa0600030:five_prime_UTR | 35.0% |
| ! | ACAATGTTCTGTCTTGTTGT+TGG | + | chr4_2:40817372-40817391 | Msa0600030:CDS | 35.0% |
| CAAATGGAGAAGATCCTTAT+AGG | + | chr4_2:40817416-40817435 | Msa0600030:CDS | 35.0% | |
| CTTCAAATTATTAGCGGTGT+CGG | + | chr4_2:40817636-40817655 | Msa0600030:intron | 35.0% | |
| ! | ATATGGTTTGTGAAATGTGC+AGG | + | chr4_2:40817686-40817705 | Msa0600030:intron | 35.0% |
| ! | TATGGTTTGTGAAATGTGCA+GGG | + | chr4_2:40817687-40817706 | Msa0600030:intron | 35.0% |
| ATGAACCTTTCCTCATTTCT+TGG | + | chr4_2:40817796-40817815 | Msa0600030:CDS | 35.0% | |
| ACTAACCAAGAAATGAGGAA+AGG | - | chr4_2:40817804-40817823 | None:intergenic | 35.0% | |
| ACAAGACTAACCAAGAAATG+AGG | - | chr4_2:40817809-40817828 | None:intergenic | 35.0% | |
| GTAACTAATGCTTTAACCAG+TGG | - | chr4_2:40817844-40817863 | None:intergenic | 35.0% | |
| TAATCTCGGACATGGATATA+AGG | + | chr4_2:40818026-40818045 | Msa0600030:intron | 35.0% | |
| !!! | TAGTATTTTGGTTTAAGGCG+AGG | - | chr4_2:40818138-40818157 | None:intergenic | 35.0% |
| GGACCGTCAATATATTCTTA+AGG | - | chr4_2:40818197-40818216 | None:intergenic | 35.0% | |
| ATAAATCGAACCATCCTCAA+AGG | + | chr4_2:40818310-40818329 | Msa0600030:intron | 35.0% | |
| ! | TTGTATTGTTCCTTTGAGGA+TGG | - | chr4_2:40818323-40818342 | None:intergenic | 35.0% |
| TCGATTGTATTGTTCCTTTG+AGG | - | chr4_2:40818327-40818346 | None:intergenic | 35.0% | |
| TCAAAGGAACAATACAATCG+AGG | + | chr4_2:40818326-40818345 | Msa0600030:intron | 35.0% | |
| ATATAAGTGAAGTTCTGTCC+TGG | - | chr4_2:40818656-40818675 | None:intergenic | 35.0% | |
| ATCACTTCCGCTATCTAAAA+CGG | - | chr4_2:40818951-40818970 | None:intergenic | 35.0% | |
| AACAGTGAATGTGTAAGCAT+TGG | - | chr4_2:40819014-40819033 | None:intergenic | 35.0% | |
| TACACATTCACTGTTGATCA+AGG | + | chr4_2:40819019-40819038 | Msa0600030:CDS | 35.0% | |
| CTGCTATGGTATCAAATTTC+AGG | - | chr4_2:40819073-40819092 | None:intergenic | 35.0% | |
| ! | GGTTGTTAGATATGTTTTCG+AGG | + | chr4_2:40819127-40819146 | Msa0600030:intron | 35.0% |
| ACAATCCCTTATCTCTTCAA+CGG | + | chr4_2:40819161-40819180 | Msa0600030:intron | 35.0% | |
| CATAACCGTTGAAGAGATAA+GGG | - | chr4_2:40819169-40819188 | None:intergenic | 35.0% | |
| ACATAACCGTTGAAGAGATA+AGG | - | chr4_2:40819170-40819189 | None:intergenic | 35.0% | |
| AACTAATATCAGCTGGATCT+AGG | - | chr4_2:40819194-40819213 | None:intergenic | 35.0% | |
| ! | TAAAGTGCTTGATTGTTTGC+AGG | + | chr4_2:40819401-40819420 | Msa0600030:intron | 35.0% |
| ! | AAAGTGCTTGATTGTTTGCA+GGG | + | chr4_2:40819402-40819421 | Msa0600030:intron | 35.0% |
| AGATTCCGGATATCAAATGT+GGG | + | chr4_2:40819434-40819453 | Msa0600030:CDS | 35.0% | |
| TAATCCCCACATTTGATATC+CGG | - | chr4_2:40819442-40819461 | None:intergenic | 35.0% | |
| !! | GATTCTGAAATTGATGGATG+TGG | - | chr4_2:40819465-40819484 | None:intergenic | 35.0% |
| TCCATCAATTTCAGAATCCA+AGG | + | chr4_2:40819467-40819486 | Msa0600030:CDS | 35.0% | |
| CCATCAATTTCAGAATCCAA+GGG | + | chr4_2:40819468-40819487 | Msa0600030:CDS | 35.0% | |
| TGACTCACTTGACATTCATT+TGG | + | chr4_2:40819544-40819563 | Msa0600030:CDS | 35.0% | |
| GACTCACTTGACATTCATTT+GGG | + | chr4_2:40819545-40819564 | Msa0600030:CDS | 35.0% | |
| ACTCACTTGACATTCATTTG+GGG | + | chr4_2:40819546-40819565 | Msa0600030:CDS | 35.0% | |
| !! | GTATTCTGTATTGGTTACTG+CGG | + | chr4_2:40819574-40819593 | Msa0600030:CDS | 35.0% |
| ACAATGTAGTAGTCATTTGG+TGG | - | chr4_2:40819605-40819624 | None:intergenic | 35.0% | |
| ACTACATTGTTGTCACAACA+AGG | + | chr4_2:40819615-40819634 | Msa0600030:CDS | 35.0% | |
| ! | TGAAGAATGGATGAAGCATT+CGG | - | chr4_2:40819656-40819675 | None:intergenic | 35.0% |
| AATTGAATTCGGCAGTACTT+AGG | + | chr4_2:40819869-40819888 | Msa0600030:intron | 35.0% | |
| ATTGAATTCGGCAGTACTTA+GGG | + | chr4_2:40819870-40819889 | Msa0600030:intron | 35.0% | |
| CATTTATTTAACTACCACCG+AGG | - | chr4_2:40819940-40819959 | None:intergenic | 35.0% | |
| GAAATACTGGAAAACATGCT+CGG | - | chr4_2:40820037-40820056 | None:intergenic | 35.0% | |
| ! | AGCATGTTTTCCAGTATTTC+CGG | + | chr4_2:40820037-40820056 | Msa0600030:intron | 35.0% |
| TCTTCGAAATTGCGTATGTT+AGG | - | chr4_2:40820253-40820272 | None:intergenic | 35.0% | |
| ! | AAGTAATCAGCTAGTTTGAG+TGG | - | chr4_2:40820593-40820612 | None:intergenic | 35.0% |
| CTGATTACTTCAAGATCCAA+GGG | + | chr4_2:40820603-40820622 | Msa0600030:CDS | 35.0% | |
| TGATTACTTCAAGATCCAAG+GGG | + | chr4_2:40820604-40820623 | Msa0600030:CDS | 35.0% | |
| TTATCTTCAGACTTCTGTCA+TGG | + | chr4_2:40820673-40820692 | Msa0600030:CDS | 35.0% | |
| GACATAGCTTCTTTGTAGTA+GGG | + | chr4_2:40820771-40820790 | Msa0600030:CDS | 35.0% | |
| ! | AGCATTAAGCCTTATCACAA+TGG | - | chr4_2:40821102-40821121 | None:intergenic | 35.0% |
| TAGCATCATCTACAAACCAA+AGG | - | chr4_2:40821164-40821183 | None:intergenic | 35.0% | |
| TACATGCCATTGGATAATGT+GGG | + | chr4_2:40821382-40821401 | Msa0600030:CDS | 35.0% | |
| !! | GACTGCTTTTCTTTGCACAA+AGG | + | chr4_2:40817235-40817254 | Msa0600030:five_prime_UTR | 40.0% |
| TTCCTTGTTGCATGTGCAAA+TGG | + | chr4_2:40817400-40817419 | Msa0600030:CDS | 40.0% | |
| TCCACTTGGAGTTAAACAAC+AGG | + | chr4_2:40817474-40817493 | Msa0600030:CDS | 40.0% | |
| ! | ACCTGTTGTTTAACTCCAAG+TGG | - | chr4_2:40817478-40817497 | None:intergenic | 40.0% |
| ! | ATGGTTTGTGAAATGTGCAG+GGG | + | chr4_2:40817688-40817707 | Msa0600030:intron | 40.0% |
| !! | GTGCAGGGGATTTTGATAAA+TGG | + | chr4_2:40817702-40817721 | Msa0600030:intron | 40.0% |
| !! | TTAGTCACTGACTCAATCTG+TGG | - | chr4_2:40817741-40817760 | None:intergenic | 40.0% |
| TTTCGACTTAATCTCGGACA+TGG | + | chr4_2:40818018-40818037 | Msa0600030:intron | 40.0% | |
| ATGGATATAAGGTTGGAGTG+AGG | + | chr4_2:40818037-40818056 | Msa0600030:intron | 40.0% | |
| TGGATATAAGGTTGGAGTGA+GGG | + | chr4_2:40818038-40818057 | Msa0600030:intron | 40.0% | |
| ATTATTTGAGAGGGACTCGA+GGG | - | chr4_2:40818282-40818301 | None:intergenic | 40.0% | |
| AATTATTTGAGAGGGACTCG+AGG | - | chr4_2:40818283-40818302 | None:intergenic | 40.0% | |
| !! | TAAAATCAGAGGTGTTAGGC+AGG | - | chr4_2:40818400-40818419 | None:intergenic | 40.0% |
| ! | CACGTCAGTTTTTATACTCG+CGG | - | chr4_2:40818440-40818459 | None:intergenic | 40.0% |
| ACAAATTGTCCAATCTCTCC+AGG | + | chr4_2:40818635-40818654 | Msa0600030:CDS | 40.0% | |
| ! | ATCAAAAGGTACGGGAATCA+CGG | - | chr4_2:40818780-40818799 | None:intergenic | 40.0% |
| AATATGGTGTAATCTCCGGA+TGG | - | chr4_2:40818806-40818825 | None:intergenic | 40.0% | |
| ATCCGGAGATTACACCATAT+TGG | + | chr4_2:40818805-40818824 | Msa0600030:CDS | 40.0% | |
| TGCCAATATGGTGTAATCTC+CGG | - | chr4_2:40818810-40818829 | None:intergenic | 40.0% | |
| ! | CATTGATGACAAGTCCATCA+GGG | - | chr4_2:40818982-40819001 | None:intergenic | 40.0% |
| ! | AAAATCGGCTTCATCTGCTA+TGG | - | chr4_2:40819087-40819106 | None:intergenic | 40.0% |
| GTTGAAGAGATAAGGGATTG+TGG | - | chr4_2:40819162-40819181 | None:intergenic | 40.0% | |
| GTTAACTACTAGCGTGTAGA+CGG | + | chr4_2:40819211-40819230 | Msa0600030:intron | 40.0% | |
| CAGATTCCGGATATCAAATG+TGG | + | chr4_2:40819433-40819452 | Msa0600030:CDS | 40.0% | |
| GATTCCGGATATCAAATGTG+GGG | + | chr4_2:40819435-40819454 | Msa0600030:CDS | 40.0% | |
| !! | CCCTTGGATTCTGAAATTGA+TGG | - | chr4_2:40819471-40819490 | None:intergenic | 40.0% |
| !! | GCATAAGATGAAGCTTGTTG+AGG | + | chr4_2:40819490-40819509 | Msa0600030:CDS | 40.0% |
| !! | TAAGATGAAGCTTGTTGAGG+TGG | + | chr4_2:40819493-40819512 | Msa0600030:CDS | 40.0% |
| CTTCATTACAGTAACTCTGC+TGG | + | chr4_2:40819671-40819690 | Msa0600030:CDS | 40.0% | |
| GTTAAGTGTGCACTATGTTC+CGG | - | chr4_2:40820059-40820078 | None:intergenic | 40.0% | |
| ! | ACACTCGTGAATTTTCACGA+AGG | - | chr4_2:40820094-40820113 | None:intergenic | 40.0% |
| TGTTCAACGATTGTCAGCAA+TGG | - | chr4_2:40820339-40820358 | None:intergenic | 40.0% | |
| GCTGATTACTTCAAGATCCA+AGG | + | chr4_2:40820602-40820621 | Msa0600030:CDS | 40.0% | |
| !!! | GTTTTCACTTGGAAGTATCC+CGG | + | chr4_2:40820628-40820647 | Msa0600030:CDS | 40.0% |
| CTCCACAAAACCTCGAAAAT+CGG | - | chr4_2:40820702-40820721 | None:intergenic | 40.0% | |
| ! | CATGATTGCAAAGTGTCTTC+AGG | - | chr4_2:40820740-40820759 | None:intergenic | 40.0% |
| CTGAAGACACTTTGCAATCA+TGG | + | chr4_2:40820738-40820757 | Msa0600030:CDS | 40.0% | |
| TTGCAATCATGGCACATTGA+TGG | + | chr4_2:40820749-40820768 | Msa0600030:CDS | 40.0% | |
| GGACATAGCTTCTTTGTAGT+AGG | + | chr4_2:40820770-40820789 | Msa0600030:CDS | 40.0% | |
| ATGGAGGATACATGGTTTAC+GGG | - | chr4_2:40820869-40820888 | None:intergenic | 40.0% | |
| CATGGAGGATACATGGTTTA+CGG | - | chr4_2:40820870-40820889 | None:intergenic | 40.0% | |
| TATTTCGATCATGTTGCGCA+TGG | - | chr4_2:40820888-40820907 | None:intergenic | 40.0% | |
| ATTGGAATTTGCAGGATGGA+TGG | + | chr4_2:40820988-40821007 | Msa0600030:intron | 40.0% | |
| AATTGCTCGTAGTACAGTTC+AGG | + | chr4_2:40821059-40821078 | Msa0600030:CDS | 40.0% | |
| GTTCGCTATCCATTGTGATA+AGG | + | chr4_2:40821090-40821109 | Msa0600030:intron | 40.0% | |
| GTACATGCCATTGGATAATG+TGG | + | chr4_2:40821381-40821400 | Msa0600030:CDS | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | - | chr4_2:40821391-40821410 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | + | chr4_2:40821389-40821408 | Msa0600030:CDS | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | + | chr4_2:40821411-40821430 | Msa0600030:CDS | 40.0% | |
| AATTGGGCAAGACAGTACTT+GGG | + | chr4_2:40821427-40821446 | Msa0600030:CDS | 40.0% | |
| TCATCTCTCACTGAATTTGC+AGG | - | chr4_2:40821481-40821500 | None:intergenic | 40.0% | |
| GAAGTGCATTGCTTGGAATA+GGG | - | chr4_2:40821507-40821526 | None:intergenic | 40.0% | |
| TGAAGTGCATTGCTTGGAAT+AGG | - | chr4_2:40821508-40821527 | None:intergenic | 40.0% | |
| CTCCATTTGCACATGCAACA+AGG | - | chr4_2:40817405-40817424 | None:intergenic | 45.0% | |
| GAAAACAGCTGGACAATGCA+TGG | + | chr4_2:40817964-40817983 | Msa0600030:intron | 45.0% | |
| CTCGGACATGGATATAAGGT+TGG | + | chr4_2:40818030-40818049 | Msa0600030:intron | 45.0% | |
| AAGTTCTGTCCTGGAGAGAT+TGG | - | chr4_2:40818647-40818666 | None:intergenic | 45.0% | |
| TCCTTCGCTTGCATTTCACA+AGG | + | chr4_2:40818715-40818734 | Msa0600030:CDS | 45.0% | |
| ! | GATGGAGGATCAAAAGGTAC+GGG | - | chr4_2:40818788-40818807 | None:intergenic | 45.0% |
| GGATGGAGGATCAAAAGGTA+CGG | - | chr4_2:40818789-40818808 | None:intergenic | 45.0% | |
| ! | GTACCTTTTGATCCTCCATC+CGG | + | chr4_2:40818788-40818807 | Msa0600030:CDS | 45.0% |
| GGAGATTACACCATATTGGC+AGG | + | chr4_2:40818809-40818828 | Msa0600030:CDS | 45.0% | |
| ACACCATATTGGCAGGAGAT+TGG | + | chr4_2:40818816-40818835 | Msa0600030:CDS | 45.0% | |
| GTACCAATCTCCTGCCAATA+TGG | - | chr4_2:40818822-40818841 | None:intergenic | 45.0% | |
| !! | TTGAGGGCCGTTTTAGATAG+CGG | + | chr4_2:40818941-40818960 | Msa0600030:CDS | 45.0% |
| AGTGATCTTCCTTTCCCTGA+TGG | + | chr4_2:40818965-40818984 | Msa0600030:CDS | 45.0% | |
| ATGACAAGTCCATCAGGGAA+AGG | - | chr4_2:40818977-40818996 | None:intergenic | 45.0% | |
| ! | CCATTGATGACAAGTCCATC+AGG | - | chr4_2:40818983-40819002 | None:intergenic | 45.0% |
| !! | CCTGATGGACTTGTCATCAA+TGG | + | chr4_2:40818980-40818999 | Msa0600030:CDS | 45.0% |
| !! | ATGTGTAAGCATTGGAACCG+CGG | - | chr4_2:40819006-40819025 | None:intergenic | 45.0% |
| TATCGAGAAAAGCGGGTAGA+CGG | - | chr4_2:40819249-40819268 | None:intergenic | 45.0% | |
| CAGGGAAGACTTACAGATTC+CGG | + | chr4_2:40819420-40819439 | Msa0600030:intron | 45.0% | |
| CAAGCTTCATCTTATGCCCT+TGG | - | chr4_2:40819487-40819506 | None:intergenic | 45.0% | |
| !! | ATGAAGCTTGTTGAGGTGGA+AGG | + | chr4_2:40819497-40819516 | Msa0600030:CDS | 45.0% |
| !! | AACTCTGCTGGAAGTGTTTC+TGG | + | chr4_2:40819683-40819702 | Msa0600030:CDS | 45.0% |
| GACCAACCACTGAAATCGAT+TGG | + | chr4_2:40819720-40819739 | Msa0600030:CDS | 45.0% | |
| ! | GACCAATCGATTTCAGTGGT+TGG | - | chr4_2:40819725-40819744 | None:intergenic | 45.0% |
| ! | AACGGACCAATCGATTTCAG+TGG | - | chr4_2:40819729-40819748 | None:intergenic | 45.0% |
| ! | TAGAGAGCGAGCTTGTTCAA+CGG | - | chr4_2:40819747-40819766 | None:intergenic | 45.0% |
| TTGAACAAGCTCGCTCTCTA+AGG | + | chr4_2:40819747-40819766 | Msa0600030:CDS | 45.0% | |
| GCACTATGTTCCGGAAATAC+TGG | - | chr4_2:40820050-40820069 | None:intergenic | 45.0% | |
| ! | CTTGAGATCGAAAGCGTGTT+TGG | - | chr4_2:40820362-40820381 | None:intergenic | 45.0% |
| GTTAAAGTCAGCATGGGACA+CGG | - | chr4_2:40820388-40820407 | None:intergenic | 45.0% | |
| AGGAGGAATCTTACAGCAAG+TGG | + | chr4_2:40820425-40820444 | Msa0600030:intron | 45.0% | |
| ! | GTTCCTTGTGGATTTGGTCT+TGG | - | chr4_2:40820452-40820471 | None:intergenic | 45.0% |
| TGGTAGGTTCCTTGTGGATT+TGG | - | chr4_2:40820458-40820477 | None:intergenic | 45.0% | |
| CCATAATGGTAGGTTCCTTG+TGG | - | chr4_2:40820464-40820483 | None:intergenic | 45.0% | |
| CCACAAGGAACCTACCATTA+TGG | + | chr4_2:40820461-40820480 | Msa0600030:CDS | 45.0% | |
| GTTTGAGTGGTGTATCAGCA+GGG | - | chr4_2:40820580-40820599 | None:intergenic | 45.0% | |
| AGTTTGAGTGGTGTATCAGC+AGG | - | chr4_2:40820581-40820600 | None:intergenic | 45.0% | |
| !!! | ATCCAAGGGGTGTTTTCACT+TGG | + | chr4_2:40820617-40820636 | Msa0600030:CDS | 45.0% |
| TTCCAAGTGAAAACACCCCT+TGG | - | chr4_2:40820622-40820641 | None:intergenic | 45.0% | |
| TCTTCAGACTTCTGTCATGG+CGG | + | chr4_2:40820676-40820695 | Msa0600030:CDS | 45.0% | |
| !! | CGATTTTCGAGGTTTTGTGG+AGG | + | chr4_2:40820700-40820719 | Msa0600030:CDS | 45.0% |
| CACAGGTGTATCCAAAGTCA+TGG | + | chr4_2:40821350-40821369 | Msa0600030:intron | 45.0% | |
| TACAGTGCAGTCCATGACTT+TGG | - | chr4_2:40821364-40821383 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | + | chr4_2:40821398-40821417 | Msa0600030:CDS | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | + | chr4_2:40821410-40821429 | Msa0600030:CDS | 45.0% | |
| GAATTGGGCAAGACAGTACT+TGG | + | chr4_2:40821426-40821445 | Msa0600030:CDS | 45.0% | |
| !! | ATATAACTTTAATATTTATA+AGG | + | chr4_2:40821135-40821154 | Msa0600030:intron | 5.0% |
| !! | TATAACTTTAATATTTATAA+GGG | + | chr4_2:40821136-40821155 | Msa0600030:intron | 5.0% |
| !! | ATCAGAGGTGTTAGGCAGGT+TGG | - | chr4_2:40818396-40818415 | None:intergenic | 50.0% |
| !! | ATAGGAATGGAGTGCTGCAG+AGG | + | chr4_2:40818582-40818601 | Msa0600030:intron | 50.0% |
| TGCTGCAGAGGAGAAACTCA+TGG | + | chr4_2:40818594-40818613 | Msa0600030:CDS | 50.0% | |
| AGGAGAAACTCATGGCAGGA+TGG | + | chr4_2:40818602-40818621 | Msa0600030:CDS | 50.0% | |
| TCATGGCAGGATGGAGTGTA+TGG | + | chr4_2:40818611-40818630 | Msa0600030:CDS | 50.0% | |
| GCCTTGTGAAATGCAAGCGA+AGG | - | chr4_2:40818719-40818738 | None:intergenic | 50.0% | |
| CTTGCATTTCACAAGGCAGC+AGG | + | chr4_2:40818722-40818741 | Msa0600030:CDS | 50.0% | |
| TCTCCGGATGGAGGATCAAA+AGG | - | chr4_2:40818794-40818813 | None:intergenic | 50.0% | |
| ATGGTGTAATCTCCGGATGG+AGG | - | chr4_2:40818803-40818822 | None:intergenic | 50.0% | |
| ATCGAGAAAAGCGGGTAGAC+GGG | - | chr4_2:40819248-40819267 | None:intergenic | 50.0% | |
| GGGGCAGACGTATTCTGTAT+TGG | + | chr4_2:40819565-40819584 | Msa0600030:CDS | 50.0% | |
| CACAACAAGGTTCACGTCAC+AGG | + | chr4_2:40819628-40819647 | Msa0600030:CDS | 50.0% | |
| ! | ATTTCAGTGGTTGGTCCAGC+AGG | - | chr4_2:40819716-40819735 | None:intergenic | 50.0% |
| CAACCACTTGCACTAGACCT+CGG | + | chr4_2:40819920-40819939 | Msa0600030:intron | 50.0% | |
| GGACCAAGACCAAATCCACA+AGG | + | chr4_2:40820446-40820465 | Msa0600030:CDS | 50.0% | |
| !! | GGCCGATTTTCGAGGTTTTG+TGG | + | chr4_2:40820697-40820716 | Msa0600030:CDS | 50.0% |
| TGTTGCGCATGGAGGATACA+TGG | - | chr4_2:40820877-40820896 | None:intergenic | 50.0% | |
| TTCGATCATGTTGCGCATGG+AGG | - | chr4_2:40820885-40820904 | None:intergenic | 50.0% | |
| GGAATTTGCAGGATGGATGG+AGG | + | chr4_2:40820991-40821010 | Msa0600030:intron | 50.0% | |
| GACTGCACTGTACATGCCAT+TGG | + | chr4_2:40821372-40821391 | Msa0600030:CDS | 50.0% | |
| CCACACTGAAGTGCATTGCT+TGG | - | chr4_2:40821514-40821533 | None:intergenic | 50.0% | |
| CCAAGCAATGCACTTCAGTG+TGG | + | chr4_2:40821511-40821530 | Msa0600030:CDS | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | + | chr4_2:40821516-40821535 | Msa0600030:CDS | 50.0% | |
| ! | ACTGACTCAATCTGTGGCCC+TGG | - | chr4_2:40817735-40817754 | None:intergenic | 55.0% |
| GCAGAGGAGAAACTCATGGC+AGG | + | chr4_2:40818598-40818617 | Msa0600030:CDS | 55.0% | |
| GCATTTCACAAGGCAGCAGG+AGG | + | chr4_2:40818725-40818744 | Msa0600030:CDS | 55.0% | |
| CACAAGGCAGCAGGAGGTTA+TGG | + | chr4_2:40818731-40818750 | Msa0600030:CDS | 55.0% | |
| AAGGCAGCAGGAGGTTATGG+CGG | + | chr4_2:40818734-40818753 | Msa0600030:CDS | 55.0% | |
| GGACTTGTCATCAATGGCCG+CGG | + | chr4_2:40818986-40819005 | Msa0600030:CDS | 55.0% | |
| !! | GTTTCTGGTCCTCTTCCTGC+TGG | + | chr4_2:40819698-40819717 | Msa0600030:CDS | 55.0% |
| CGAGGTCTAGTGCAAGTGGT+TGG | - | chr4_2:40819922-40819941 | None:intergenic | 55.0% | |
| CTGGAAAACATGCTCGGCAG+TGG | - | chr4_2:40820031-40820050 | None:intergenic | 55.0% | |
| GCAGGATGGATGGAGGACAA+TGG | + | chr4_2:40820998-40821017 | Msa0600030:intron | 55.0% | |
| ACTTCAGTGTGGCAAGGCAG+TGG | + | chr4_2:40821522-40821541 | Msa0600030:CDS | 55.0% | |
| CTTCAGTGTGGCAAGGCAGT+GGG | + | chr4_2:40821523-40821542 | Msa0600030:CDS | 55.0% | |
| ! | GTGGTTGGTCCAGCAGGAAG+AGG | - | chr4_2:40819710-40819729 | None:intergenic | 60.0% |
| CCACCGAGGTCTAGTGCAAG+TGG | - | chr4_2:40819926-40819945 | None:intergenic | 60.0% | |
| CCACTTGCACTAGACCTCGG+TGG | + | chr4_2:40819923-40819942 | Msa0600030:intron | 60.0% | |
| AGTATCCCGGACAACCCCAC+CGG | + | chr4_2:40820641-40820660 | Msa0600030:CDS | 60.0% | |
| CTGAAGATAACCGCCGCCAC+CGG | - | chr4_2:40820663-40820682 | None:intergenic | 60.0% | |
| !! | GTCATGGCGGCCGATTTTCG+AGG | + | chr4_2:40820689-40820708 | Msa0600030:CDS | 60.0% |
| AGATAACCGCCGCCACCGGT+GGG | - | chr4_2:40820659-40820678 | None:intergenic | 65.0% | |
| AAGATAACCGCCGCCACCGG+TGG | - | chr4_2:40820660-40820679 | None:intergenic | 65.0% | |
| ATCCCGGACAACCCCACCGG+TGG | + | chr4_2:40820644-40820663 | Msa0600030:CDS | 70.0% | |
| GATAACCGCCGCCACCGGTG+GGG | - | chr4_2:40820658-40820677 | None:intergenic | 70.0% | |
| CGCCACCGGTGGGGTTGTCC+GGG | - | chr4_2:40820649-40820668 | None:intergenic | 75.0% | |
| CCGCCACCGGTGGGGTTGTC+CGG | - | chr4_2:40820650-40820669 | None:intergenic | 75.0% | |
| CCGGACAACCCCACCGGTGG+CGG | + | chr4_2:40820647-40820666 | Msa0600030:CDS | 75.0% | |
| ! | GACAACCCCACCGGTGGCGG+CGG | + | chr4_2:40820650-40820669 | Msa0600030:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 40817171 | 40821837 | 40817171 | ID=Msa0600030;Name=Msa0600030 |
| chr4_2 | mRNA | 40817171 | 40821837 | 40817171 | ID=Msa0600030-mRNA-1;Parent=Msa0600030;Name=Msa0600030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=187|1|1|1|1|1|8|279|538 |
| chr4_2 | exon | 40817171 | 40817495 | 40817171 | ID=Msa0600030-mRNA-1:exon:8875;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40817708 | 40817817 | 40817708 | ID=Msa0600030-mRNA-1:exon:8876;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40818586 | 40818856 | 40818586 | ID=Msa0600030-mRNA-1:exon:8877;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40818938 | 40819040 | 40818938 | ID=Msa0600030-mRNA-1:exon:8878;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40819423 | 40819768 | 40819423 | ID=Msa0600030-mRNA-1:exon:8879;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40820427 | 40820792 | 40820427 | ID=Msa0600030-mRNA-1:exon:8880;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40821002 | 40821080 | 40821002 | ID=Msa0600030-mRNA-1:exon:8881;Parent=Msa0600030-mRNA-1 |
| chr4_2 | exon | 40821355 | 40821837 | 40821355 | ID=Msa0600030-mRNA-1:exon:8882;Parent=Msa0600030-mRNA-1 |
| chr4_2 | five_prime_UTR | 40817171 | 40817357 | 40817171 | ID=Msa0600030-mRNA-1:five_prime_utr;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40817358 | 40817495 | 40817358 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40817708 | 40817817 | 40817708 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40818586 | 40818856 | 40818586 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40818938 | 40819040 | 40818938 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40819423 | 40819768 | 40819423 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40820427 | 40820792 | 40820427 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40821002 | 40821080 | 40821002 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | CDS | 40821355 | 40821558 | 40821355 | ID=Msa0600030-mRNA-1:cds;Parent=Msa0600030-mRNA-1 |
| chr4_2 | three_prime_UTR | 40821559 | 40821837 | 40821559 | ID=Msa0600030-mRNA-1:three_prime_utr;Parent=Msa0600030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
