AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140380 MtrunA17_Chr3g0138431 92.562 484 30 2 1 484 1 478 0.0 916
Msa0140380 MtrunA17_Chr1g0148681 56.223 466 145 8 17 480 9 417 9.50e-173 492
Msa0140380 MtrunA17_Chr2g0332171 46.341 492 228 15 11 480 8 485 3.97e-120 360
Msa0140380 MtrunA17_Chr2g0332181 42.678 478 207 8 3 472 2 420 1.87e-115 346
Msa0140380 MtrunA17_Chr3g0125051 52.632 285 126 4 201 481 225 504 2.77e-97 302
Msa0140380 MtrunA17_Chr3g0125041 51.648 273 127 2 200 470 227 496 4.54e-97 302
Msa0140380 MtrunA17_Chr1g0152871 51.986 277 129 3 205 479 80 354 2.27e-91 282
Msa0140380 MtrunA17_Chr3g0134421 47.018 285 140 3 196 475 64 342 3.64e-81 256
Msa0140380 MtrunA17_Chr3g0134401 44.569 267 145 1 209 475 67 330 7.45e-75 239
Msa0140380 MtrunA17_Chr3g0134411 43.509 285 136 3 203 475 78 349 2.29e-73 236
Msa0140380 MtrunA17_Chr3g0134441 50.388 258 121 3 221 475 69 322 3.73e-72 231
Msa0140380 MtrunA17_Chr3g0134431 46.586 249 107 4 220 466 13 237 1.01e-61 202
Msa0140380 MtrunA17_Chr7g0255771 38.489 278 159 7 200 473 182 451 1.28e-54 189
Msa0140380 MtrunA17_Chr5g0441371 38.909 275 154 7 202 473 150 413 3.51e-53 184
Msa0140380 MtrunA17_Chr5g0406741 38.686 274 157 4 201 473 156 419 1.01e-51 181
Msa0140380 MtrunA17_Chr8g0370671 37.692 260 148 4 216 473 176 423 3.08e-49 174
Msa0140380 MtrunA17_Chr8g0357001 39.189 222 125 4 214 435 484 695 1.60e-43 163
Msa0140380 MtrunA17_Chr3g0102851 29.730 259 156 8 185 434 2 243 9.44e-26 106
Msa0140380 MtrunA17_Chr3g0103471 30.672 238 148 7 202 434 8 233 6.96e-25 103
Msa0140380 MtrunA17_Chr3g0102621 30.396 227 141 6 213 434 25 239 8.33e-24 100
Msa0140380 MtrunA17_Chr3g0102861 28.968 252 148 8 192 434 4 233 2.15e-23 99.8
Msa0140380 MtrunA17_Chr3g0102631 33.333 177 98 6 267 434 1 166 2.78e-19 86.3
Msa0140380 MtrunA17_Chr3g0102651 33.333 177 98 6 267 434 1 166 2.78e-19 86.3
Msa0140380 MtrunA17_Chr3g0102661 33.333 177 98 6 267 434 1 166 2.78e-19 86.3
Msa0140380 MtrunA17_Chr3g0102671 33.333 177 98 6 267 434 1 166 2.78e-19 86.3
Msa0140380 MtrunA17_Chr5g0418901 41.772 79 46 0 271 349 7 85 3.64e-19 82.4
Msa0140380 MtrunA17_Chr1g0161581 33.516 182 97 6 234 414 362 520 1.80e-16 82.0
Msa0140380 MtrunA17_Chr6g0462911 27.336 289 170 14 208 484 38 298 2.64e-14 73.9
Msa0140380 MtrunA17_Chr5g0398791 26.923 156 98 2 242 391 27 172 1.52e-13 68.9
Msa0140380 MtrunA17_Chr6g0462981 27.778 288 172 12 208 484 38 300 4.94e-13 70.1
Msa0140380 MtrunA17_Chr3g0133211 30.147 136 82 4 228 354 74 205 2.73e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140380 AT5G25380.4 49.585 482 173 12 10 480 19 441 6.31e-138 405
Msa0140380 AT5G11300.1 49.471 473 174 11 13 480 22 434 5.96e-137 402
Msa0140380 AT5G25380.3 48.649 481 173 10 10 480 19 435 2.95e-136 400
Msa0140380 AT5G25380.1 48.649 481 173 10 10 480 19 435 2.95e-136 400
Msa0140380 AT5G25380.2 48.491 464 166 9 10 464 19 418 7.44e-132 388
Msa0140380 AT1G80370.1 45.880 449 196 7 31 472 42 450 3.53e-121 362
Msa0140380 AT1G15570.1 47.196 428 188 9 62 480 52 450 2.65e-119 357
Msa0140380 AT5G11300.2 47.101 414 155 10 13 422 22 375 8.86e-109 329
Msa0140380 AT1G44110.1 53.455 275 125 1 196 470 174 445 2.49e-103 317
Msa0140380 AT5G43080.2 50.730 274 127 1 202 475 73 338 2.71e-93 287
Msa0140380 AT5G43080.1 50.365 274 133 1 202 475 73 343 5.67e-93 286
Msa0140380 AT1G47210.2 47.157 299 151 3 179 475 67 360 2.29e-90 280
Msa0140380 AT1G77390.1 50.877 285 131 4 200 480 162 441 8.33e-90 281
Msa0140380 AT1G47220.1 49.632 272 132 2 202 471 42 310 8.27e-84 262
Msa0140380 AT1G47230.1 46.931 277 142 2 201 475 80 353 1.58e-83 263
Msa0140380 AT1G47230.2 46.763 278 142 3 201 475 80 354 1.04e-81 258
Msa0140380 AT5G06150.1 38.144 291 166 6 193 482 158 435 3.68e-54 188
Msa0140380 AT1G20610.1 36.957 276 159 5 201 473 161 424 2.66e-49 175
Msa0140380 AT2G26760.1 39.544 263 145 7 201 460 114 365 2.72e-49 174
Msa0140380 AT1G76310.1 37.993 279 157 6 199 473 159 425 7.17e-49 174
Msa0140380 AT3G11520.1 38.321 274 157 5 201 473 143 405 1.07e-47 170
Msa0140380 AT3G11520.2 41.322 242 130 5 201 441 143 373 1.79e-46 166
Msa0140380 AT1G76310.2 40.833 240 126 6 199 434 159 386 5.76e-46 165
Msa0140380 AT4G37490.1 34.875 281 165 8 200 473 148 417 7.10e-45 163
Msa0140380 AT1G16330.1 36.434 258 154 3 216 473 395 642 1.11e-43 163
Msa0140380 AT1G76310.3 34.528 307 157 7 199 473 159 453 4.09e-43 159
Msa0140380 AT2G17620.1 38.828 273 152 5 201 470 155 415 1.94e-42 156
Msa0140380 AT4G35620.1 37.500 272 155 5 201 469 156 415 1.31e-41 154
Msa0140380 AT4G35620.2 40.084 237 127 5 201 434 156 380 7.69e-40 148
Msa0140380 AT5G06150.2 41.718 163 92 3 193 354 158 318 1.85e-35 135
Msa0140380 AT1G76310.4 41.341 179 95 5 199 368 159 336 2.60e-33 129
Msa0140380 AT1G47210.1 49.219 128 61 2 179 304 67 192 3.03e-32 122
Msa0140380 AT1G20590.1 39.506 162 85 3 275 434 63 213 3.48e-28 113
Msa0140380 AT1G34460.9 33.742 163 85 4 193 354 234 374 2.94e-20 94.0
Msa0140380 AT1G34460.6 33.742 163 85 4 193 354 248 388 2.95e-20 94.0
Msa0140380 AT1G34460.3 33.742 163 85 4 193 354 248 388 2.95e-20 94.0
Msa0140380 AT1G34460.8 33.742 163 85 4 193 354 248 388 2.95e-20 94.0
Msa0140380 AT1G34460.1 33.742 163 85 4 193 354 248 388 2.95e-20 94.0
Msa0140380 AT1G34460.2 33.742 163 85 4 193 354 245 385 3.08e-20 94.0
Msa0140380 AT1G34460.4 33.742 163 85 4 193 354 245 385 3.08e-20 94.0
Msa0140380 AT1G34460.7 33.742 163 85 4 193 354 248 388 3.10e-20 94.0
Msa0140380 AT1G34460.5 33.742 163 85 4 193 354 248 388 3.56e-20 93.6
Msa0140380 AT1G14750.1 34.337 166 96 4 247 408 384 540 4.30e-14 75.1
Msa0140380 AT1G14750.4 34.337 166 95 4 247 408 216 371 6.10e-14 73.9
Msa0140380 AT1G14750.3 34.337 166 96 4 247 408 384 540 6.50e-14 74.7
Msa0140380 AT1G14750.2 34.337 166 96 4 247 408 216 372 9.09e-14 73.6

Find 110 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 1_3:-74632789 Msa0140380:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 1_3:-74634297 Msa0140380:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 1_3:+74634100 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 1_3:+74632754 None:intergenic
CAAAGCCATGTAGCTGCTTT+TGG 0.238844 1_3:-74629580 Msa0140380:three_prime_UTR
TGTAAATTTATGCATTTCTA+AGG 0.255446 1_3:-74629844 Msa0140380:exon
AACAGTGACTGCACCGGTTT+TGG 0.269524 1_3:+74629878 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 1_3:+74632376 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 1_3:+74631396 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 1_3:+74634328 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 1_3:+74633078 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 1_3:-74630912 Msa0140380:CDS
GTTGCTCTTCTTCTTCTTCA+AGG 0.323825 1_3:-74634389 Msa0140380:five_prime_UTR
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 1_3:-74629873 Msa0140380:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 1_3:-74630921 Msa0140380:CDS
ATTTGCGTTTGAATTAGAAT+TGG 0.346535 1_3:-74634412 Msa0140380:five_prime_UTR
TTCTCCATGTAATTGGTTGA+TGG 0.359361 1_3:+74632383 None:intergenic
TAAACTTTATCTTGTTATAC+AGG 0.362296 1_3:-74630939 Msa0140380:CDS
CACCATTGCTGCAGTAACTT+TGG 0.388234 1_3:-74633217 Msa0140380:CDS
CTACGTAACTAATGAGTAAA+GGG 0.406984 1_3:+74629754 None:intergenic
TGCAAGTAACACCAAGCAAC+TGG 0.415916 1_3:+74631924 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 1_3:+74634298 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 1_3:+74633084 None:intergenic
ATGGCTTTGTTGAATTATAA+CGG 0.426708 1_3:+74629594 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 1_3:+74630633 None:intergenic
AACATGGTCACTTACGTTGT+TGG 0.427982 1_3:+74633167 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 1_3:+74631998 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 1_3:-74634246 Msa0140380:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 1_3:+74630802 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 1_3:-74632334 Msa0140380:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 1_3:-74630691 Msa0140380:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 1_3:-74629891 Msa0140380:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 1_3:+74630659 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 1_3:+74632815 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 1_3:+74630792 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 1_3:+74629855 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 1_3:-74630817 Msa0140380:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 1_3:-74631402 Msa0140380:intron
ATCAGAATTCCACGCATGCT+TGG 0.476428 1_3:+74632341 None:intergenic
TTTGCGTTTGAATTAGAATT+GGG 0.476481 1_3:-74634411 Msa0140380:five_prime_UTR
AGTTGTATCAACATGTTACA+TGG 0.477451 1_3:+74629670 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 1_3:-74634310 Msa0140380:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 1_3:+74633302 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 1_3:+74631984 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 1_3:-74629917 Msa0140380:intron
ACTACGTAACTAATGAGTAA+AGG 0.496801 1_3:+74629753 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 1_3:-74634184 Msa0140380:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 1_3:-74630637 Msa0140380:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 1_3:-74634179 Msa0140380:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 1_3:-74632023 Msa0140380:CDS
GAACTTTGTTGTATATATCA+GGG 0.514973 1_3:+74632755 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 1_3:-74632327 Msa0140380:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 1_3:-74632854 Msa0140380:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 1_3:-74633298 Msa0140380:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 1_3:+74630596 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 1_3:-74631982 Msa0140380:CDS
TATATTTCTCACGTATAGCA+TGG 0.531941 1_3:+74630580 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 1_3:+74630793 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 1_3:-74630790 Msa0140380:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 1_3:-74631935 Msa0140380:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 1_3:-74633253 Msa0140380:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 1_3:+74630836 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 1_3:+74633186 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 1_3:-74634272 Msa0140380:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 1_3:+74633089 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 1_3:+74633215 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 1_3:-74632387 Msa0140380:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 1_3:-74632842 Msa0140380:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 1_3:-74631949 Msa0140380:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 1_3:-74633283 Msa0140380:CDS
GCTCTGCTAAATAATTTGCC+AGG 0.570353 1_3:+74630894 None:intergenic
TAATTCCAAAAGCAGCTACA+TGG 0.573264 1_3:+74629575 None:intergenic
CTAAGGACTCGATCATGACT+CGG 0.574320 1_3:-74629827 Msa0140380:three_prime_UTR
AACTTTGTTGTATATATCAG+GGG 0.581055 1_3:+74632756 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 1_3:+74634125 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 1_3:-74630568 Msa0140380:intron
CGGAATTTCCTGTACAATGA+GGG 0.593704 1_3:-74629807 Msa0140380:three_prime_UTR
ACGCTCACTCCTCACTGAGC+GGG 0.595882 1_3:+74635283 None:intergenic
GCCTGGAACAGTGACTGCAC+CGG 0.595943 1_3:+74629872 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 1_3:-74634271 Msa0140380:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 1_3:-74630612 Msa0140380:CDS
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 1_3:-74630846 Msa0140380:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 1_3:-74632324 Msa0140380:intron
TACAAAGGTCAGGCGATCCG+AGG 0.611523 1_3:+74632825 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 1_3:-74631479 Msa0140380:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 1_3:+74630807 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 1_3:-74634303 Msa0140380:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 1_3:+74631972 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 1_3:+74630914 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 1_3:+74631428 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 1_3:-74634309 Msa0140380:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 1_3:-74633123 Msa0140380:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 1_3:+74631511 None:intergenic
TCACTCCTCACTGAGCGGGA+CGG 0.635592 1_3:+74635287 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 1_3:-74630789 Msa0140380:intron
TCGGAATTTCCTGTACAATG+AGG 0.638297 1_3:-74629808 Msa0140380:three_prime_UTR
ACATTCTTGCATTGAAAGTG+TGG 0.640397 1_3:+74633134 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 1_3:-74634183 Msa0140380:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 1_3:-74632850 Msa0140380:CDS
CACGCTCACTCCTCACTGAG+CGG 0.646120 1_3:+74635282 None:intergenic
AACAGTGAGTTGAAGTACTG+AGG 0.651840 1_3:-74629645 Msa0140380:three_prime_UTR
GATATTTCTCCAAGCATGCG+TGG 0.654313 1_3:-74632350 Msa0140380:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 1_3:+74634311 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 1_3:-74633090 Msa0140380:intron
ATACCCATGGATGTTCTGAG+TGG 0.668616 1_3:+74630786 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 1_3:-74631524 Msa0140380:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 1_3:-74629912 Msa0140380:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 1_3:+74633151 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 1_3:-74634178 Msa0140380:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 1_3:-74632743 Msa0140380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAT+TGG + chr1_3:74629896-74629915 None:intergenic 0.0%
!!! TATAATTTAAAACATGAATT+TGG + chr1_3:74630798-74630817 None:intergenic 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG + chr1_3:74631188-74631207 None:intergenic 10.0%
!! ATAATATAAAAAAAGTTACT+AGG - chr1_3:74631896-74631915 Msa0140380:intron 10.0%
!!! AATTAATTTGATTGATTGAT+TGG - chr1_3:74630007-74630026 Msa0140380:intron 15.0%
!! GATAAAATGTAAAAAATTGT+TGG + chr1_3:74630097-74630116 None:intergenic 15.0%
!!! AATTGGTACATTTTATTTTT+TGG + chr1_3:74631082-74631101 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG + chr1_3:74631189-74631208 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG + chr1_3:74631891-74631910 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG + chr1_3:74631892-74631911 None:intergenic 15.0%
!! GATTGTTTAATAATGAATTA+CGG + chr1_3:74632151-74632170 None:intergenic 15.0%
!! TATTTATATCTTCTAAACAA+AGG + chr1_3:74634127-74634146 None:intergenic 15.0%
!! ATTACTACTACTAATTATAA+TGG + chr1_3:74634500-74634519 None:intergenic 15.0%
!! AAAATGTAAAAAATTGTTGG+AGG + chr1_3:74630094-74630113 None:intergenic 20.0%
!!! ATTTTCTAAAAGTCAAGATT+TGG - chr1_3:74630255-74630274 Msa0140380:intron 20.0%
!!! TTTTCTAAAAGTCAAGATTT+GGG - chr1_3:74630256-74630275 Msa0140380:intron 20.0%
!! ATAATAACGAAGAAGAAATA+CGG - chr1_3:74630309-74630328 Msa0140380:intron 20.0%
!! ATCAATATCACCATATAATT+AGG - chr1_3:74630817-74630836 Msa0140380:CDS 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG + chr1_3:74630850-74630869 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG - chr1_3:74630863-74630882 Msa0140380:CDS 20.0%
!! TATGATAGAATAGAACATTA+TGG - chr1_3:74630900-74630919 Msa0140380:CDS 20.0%
!! TATTGAAATAAACCTTTGTT+TGG + chr1_3:74631788-74631807 None:intergenic 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG - chr1_3:74631825-74631844 Msa0140380:intron 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG + chr1_3:74632388-74632407 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG - chr1_3:74632431-74632450 Msa0140380:intron 20.0%
!!! GTAAGTACTATTTTTTGTAA+TGG - chr1_3:74632975-74632994 Msa0140380:intron 20.0%
!!! AATTTAACTTAGTATGTGTT+TGG - chr1_3:74633635-74633654 Msa0140380:intron 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG - chr1_3:74633924-74633943 Msa0140380:intron 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG + chr1_3:74634896-74634915 None:intergenic 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG - chr1_3:74634894-74634913 Msa0140380:intron 20.0%
!! TGTAAATTTATGCATTTCTA+AGG - chr1_3:74635019-74635038 Msa0140380:intron 20.0%
! TTAGAAAAAAGAGAGTAAGT+GGG + chr1_3:74629656-74629675 None:intergenic 25.0%
!! CTACATTACATTGTATTTTC+AGG - chr1_3:74629805-74629824 Msa0140380:three_prime_UTR 25.0%
! ATAATGGTAAATAAAGAACG+AGG + chr1_3:74630058-74630077 None:intergenic 25.0%
! AGGTGCAGAAATAAAAATAA+TGG + chr1_3:74630074-74630093 None:intergenic 25.0%
!! AAATCAACATTTTTAACCCT+GGG - chr1_3:74630150-74630169 Msa0140380:intron 25.0%
!! TTTCTAAAAGTCAAGATTTG+GGG - chr1_3:74630257-74630276 Msa0140380:intron 25.0%
!!! TAATAGTAGCATTGTTTTGT+TGG - chr1_3:74630358-74630377 Msa0140380:intron 25.0%
!!! TAATGTCTTGTTTGAAAAAC+AGG - chr1_3:74630416-74630435 Msa0140380:intron 25.0%
! ATTTGCGTTTGAATTAGAAT+TGG - chr1_3:74630451-74630470 Msa0140380:intron 25.0%
! TTTGCGTTTGAATTAGAATT+GGG - chr1_3:74630452-74630471 Msa0140380:intron 25.0%
!! TGTTAAACAATCCAATTTTC+AGG - chr1_3:74630752-74630771 Msa0140380:intron 25.0%
!! ATGAATTTGGTGACAAAATT+GGG + chr1_3:74630785-74630804 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG - chr1_3:74630875-74630894 Msa0140380:CDS 25.0%
! ACTATCATTTCCTAATGATA+TGG + chr1_3:74630986-74631005 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG - chr1_3:74631087-74631106 Msa0140380:intron 25.0%
! AAATTGTAGAATCTCATCTT+AGG - chr1_3:74631266-74631285 Msa0140380:intron 25.0%
! CTGTAAAATGGATAACTAAT+CGG + chr1_3:74631492-74631511 None:intergenic 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG + chr1_3:74631529-74631548 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG - chr1_3:74632009-74632028 Msa0140380:CDS 25.0%
! AGACATCGATAAAAAGTTAA+AGG - chr1_3:74632060-74632079 Msa0140380:intron 25.0%
! AGTTAAAGGATTCTCAAATT+TGG - chr1_3:74632074-74632093 Msa0140380:intron 25.0%
!! AACTTTGTTGTATATATCAG+GGG + chr1_3:74632110-74632129 None:intergenic 25.0%
!! GAACTTTGTTGTATATATCA+GGG + chr1_3:74632111-74632130 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG + chr1_3:74632378-74632397 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG + chr1_3:74632632-74632651 None:intergenic 25.0%
! TAGATGAGAATTCTTTGATA+AGG + chr1_3:74632638-74632657 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG + chr1_3:74632664-74632683 None:intergenic 25.0%
! CAAAAACATAGTTGAATGAT+AGG - chr1_3:74632670-74632689 Msa0140380:intron 25.0%
! ATAGGATATATACAATGTGA+TGG - chr1_3:74632688-74632707 Msa0140380:intron 25.0%
! ACTTCAACAAACTGTAATTA+AGG + chr1_3:74632768-74632787 None:intergenic 25.0%
!! TCTTTTTGAACTATGAACTA+AGG - chr1_3:74633053-74633072 Msa0140380:intron 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG + chr1_3:74633162-74633181 None:intergenic 25.0%
!!! TGTTTTTTCCCAATATCATT+CGG - chr1_3:74633273-74633292 Msa0140380:CDS 25.0%
! TAATACATACACAAAAGAAG+AGG - chr1_3:74633384-74633403 Msa0140380:intron 25.0%
! AAAAGAAGAGGTAGTAAAAA+TGG - chr1_3:74633396-74633415 Msa0140380:intron 25.0%
!!! TAGTTCAATGAAGTTTTAAG+TGG + chr1_3:74633530-74633549 None:intergenic 25.0%
! TTGATCTATTATTGTCTTTC+AGG - chr1_3:74633552-74633571 Msa0140380:intron 25.0%
! CTAAGTTAAATTGTAGATAG+TGG + chr1_3:74633627-74633646 None:intergenic 25.0%
! TGAGAAATATAAACATGAGA+AGG - chr1_3:74634295-74634314 Msa0140380:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG + chr1_3:74634405-74634424 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG - chr1_3:74634598-74634617 Msa0140380:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG + chr1_3:74634602-74634621 None:intergenic 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG + chr1_3:74634891-74634910 None:intergenic 25.0%
!! AAGTAGAATACTTCATTTTG+AGG - chr1_3:74635243-74635262 Msa0140380:intron 25.0%
!!! ATGGCTTTGTTGAATTATAA+CGG + chr1_3:74635272-74635291 None:intergenic 25.0%
! TATAAGATAGAGTTGAGTTG+AGG + chr1_3:74629623-74629642 None:intergenic 30.0%
GTTAGAAAAAAGAGAGTAAG+TGG + chr1_3:74629657-74629676 None:intergenic 30.0%
GGATAGAATTTGAGAATTAG+AGG + chr1_3:74629757-74629776 None:intergenic 30.0%
TCAGATCTAGACAACAAAAT+TGG + chr1_3:74629778-74629797 None:intergenic 30.0%
AAGCATGAAATGAAAATGCT+TGG - chr1_3:74629916-74629935 Msa0140380:intron 30.0%
!!! CTTGGTTTTTTTAACGTGTT+TGG - chr1_3:74629934-74629953 Msa0140380:intron 30.0%
!!! GTTTTTTTAACGTGTTTGGT+TGG - chr1_3:74629938-74629957 Msa0140380:intron 30.0%
! ATTGATTGATTGGTTCAACA+TGG - chr1_3:74630017-74630036 Msa0140380:intron 30.0%
! GAAATCAACATTTTTAACCC+TGG - chr1_3:74630149-74630168 Msa0140380:intron 30.0%
! AATCAACATTTTTAACCCTG+GGG - chr1_3:74630151-74630170 Msa0140380:intron 30.0%
TGTTTAACACGTTTATCATG+TGG + chr1_3:74630741-74630760 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG + chr1_3:74630766-74630785 None:intergenic 30.0%
! CATGAATTTGGTGACAAAAT+TGG + chr1_3:74630786-74630805 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG + chr1_3:74630830-74630849 None:intergenic 30.0%
!!! AAGCTTTTTTCAACTAAGTG+GGG + chr1_3:74630949-74630968 None:intergenic 30.0%
!!! CAAGCTTTTTTCAACTAAGT+GGG + chr1_3:74630950-74630969 None:intergenic 30.0%
GTTGTTATCACCATATCATT+AGG - chr1_3:74630973-74630992 Msa0140380:intron 30.0%
GATTGATCTATCTAGGTAAT+TGG - chr1_3:74631031-74631050 Msa0140380:intron 30.0%
AATAGATTTGCCTTCAAAGT+TGG - chr1_3:74631124-74631143 Msa0140380:intron 30.0%
ATAGATTTGCCTTCAAAGTT+GGG - chr1_3:74631125-74631144 Msa0140380:intron 30.0%
AAGATTGTCCAATAGTTAAG+AGG - chr1_3:74631341-74631360 Msa0140380:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG - chr1_3:74631490-74631509 Msa0140380:CDS 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG + chr1_3:74631516-74631535 None:intergenic 30.0%
AGAATTGTCTACCATAAAGA+TGG - chr1_3:74631610-74631629 Msa0140380:intron 30.0%
!! TTTTGACTCTACCATCTTTA+TGG + chr1_3:74631624-74631643 None:intergenic 30.0%
! AATAAACCTTTGTTTGGACT+TGG + chr1_3:74631782-74631801 None:intergenic 30.0%
TGACATTGCAATTTAGCATA+TGG + chr1_3:74631860-74631879 None:intergenic 30.0%
GGTGAAATATCTTAGAAGTT+TGG - chr1_3:74631943-74631962 Msa0140380:CDS 30.0%
AGACAACATGACAGTAATTA+TGG + chr1_3:74631972-74631991 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG - chr1_3:74632013-74632032 Msa0140380:CDS 30.0%
! CTTTTTATCGATGTCTACAA+AGG + chr1_3:74632056-74632075 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG + chr1_3:74632112-74632131 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG - chr1_3:74632278-74632297 Msa0140380:intron 30.0%
AAGAATAGAGCAGAATCATT+AGG - chr1_3:74632399-74632418 Msa0140380:intron 30.0%
TGATAAGGTTATGGACAAAA+AGG + chr1_3:74632623-74632642 None:intergenic 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG + chr1_3:74632661-74632680 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG - chr1_3:74632716-74632735 Msa0140380:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG - chr1_3:74632737-74632756 Msa0140380:intron 30.0%
! TTATCATCAAGCTTTTGTTG+TGG - chr1_3:74632788-74632807 Msa0140380:CDS 30.0%
!!! ACTATTTTTTGTAATGGTCC+TGG - chr1_3:74632981-74633000 Msa0140380:intron 30.0%
ACTATGAACTAAGGATATCT+AGG - chr1_3:74633062-74633081 Msa0140380:intron 30.0%
TCATTTAATCCGAATGCATT+TGG - chr1_3:74633208-74633227 Msa0140380:CDS 30.0%
TAACTATCACCAAATGCATT+CGG + chr1_3:74633220-74633239 None:intergenic 30.0%
ATCTTAGACCGAATGATATT+GGG + chr1_3:74633284-74633303 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG + chr1_3:74633470-74633489 None:intergenic 30.0%
!! ATGGATTTTGACATGTTTGA+TGG - chr1_3:74633698-74633717 Msa0140380:intron 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG + chr1_3:74633776-74633795 None:intergenic 30.0%
TATATTTCTCACGTATAGCA+TGG + chr1_3:74634286-74634305 None:intergenic 30.0%
AACATTGGTCAACTGAAAAA+AGG + chr1_3:74634341-74634360 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG + chr1_3:74634356-74634375 None:intergenic 30.0%
TAGGAACAGAGATAGTATAT+AGG - chr1_3:74634617-74634636 Msa0140380:intron 30.0%
CACTCAATAATTGAGAATGT+TGG + chr1_3:74634673-74634692 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG + chr1_3:74634827-74634846 None:intergenic 30.0%
CTACGTAACTAATGAGTAAA+GGG + chr1_3:74635112-74635131 None:intergenic 30.0%
ACTACGTAACTAATGAGTAA+AGG + chr1_3:74635113-74635132 None:intergenic 30.0%
AGTTGTATCAACATGTTACA+TGG + chr1_3:74635196-74635215 None:intergenic 30.0%
AAAAAAGAGAGTAAGTGGGA+TGG + chr1_3:74629652-74629671 None:intergenic 35.0%
TCTACAGATAGATGGAAGAA+AGG + chr1_3:74629851-74629870 None:intergenic 35.0%
TCTTCCATCTATCTGTAGAA+AGG - chr1_3:74629852-74629871 Msa0140380:exon 35.0%
CTTCCATCTATCTGTAGAAA+GGG - chr1_3:74629853-74629872 Msa0140380:exon 35.0%
TTCCATCTATCTGTAGAAAG+GGG - chr1_3:74629854-74629873 Msa0140380:exon 35.0%
GAAAATCTGAGTTCGAATCA+TGG + chr1_3:74630241-74630260 None:intergenic 35.0%
ACTCAGAATTACCAGATCAA+GGG - chr1_3:74630554-74630573 Msa0140380:intron 35.0%
! CTCAGAAGAAACAACCTTTT+TGG + chr1_3:74630634-74630653 None:intergenic 35.0%
ATTATGGCGTAATTTGATCC+TGG - chr1_3:74630916-74630935 Msa0140380:CDS 35.0%
!!! TTTTTTCAACTAAGTGGGGT+CGG + chr1_3:74630945-74630964 None:intergenic 35.0%
!!! CCAAGCTTTTTTCAACTAAG+TGG + chr1_3:74630951-74630970 None:intergenic 35.0%
CCACTTAGTTGAAAAAAGCT+TGG - chr1_3:74630948-74630967 Msa0140380:CDS 35.0%
ACATGCAGATTGATCTATCT+AGG - chr1_3:74631024-74631043 Msa0140380:intron 35.0%
ACTTACATACCCAACTTTGA+AGG + chr1_3:74631137-74631156 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG - chr1_3:74631269-74631288 Msa0140380:intron 35.0%
CTAACCTACTCTCTTTACTA+GGG + chr1_3:74631317-74631336 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG + chr1_3:74631318-74631337 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG + chr1_3:74631352-74631371 None:intergenic 35.0%
! TTATCCATTTTACAGGCCAA+AGG - chr1_3:74631497-74631516 Msa0140380:CDS 35.0%
! TTGTGCTGATGAAACTTCAA+TGG + chr1_3:74631564-74631583 None:intergenic 35.0%
ACAAGAGGATGTTAAAGAGA+AGG - chr1_3:74631580-74631599 Msa0140380:intron 35.0%
TTGGACATACAATGTTCAGT+TGG + chr1_3:74631680-74631699 None:intergenic 35.0%
ACATTCTTGCATTGAAAGTG+TGG + chr1_3:74631732-74631751 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG - chr1_3:74631873-74631892 Msa0140380:intron 35.0%
AATGAATTACGGACAAACCT+CGG + chr1_3:74632140-74632159 None:intergenic 35.0%
TGCAAAATGAAATATGCTCC+TGG + chr1_3:74632308-74632327 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG - chr1_3:74632476-74632495 Msa0140380:intron 35.0%
TTCTCCATGTAATTGGTTGA+TGG + chr1_3:74632483-74632502 None:intergenic 35.0%
!! AATTCTGATTGATTGGCTTG+TGG - chr1_3:74632536-74632555 Msa0140380:intron 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG - chr1_3:74632800-74632819 Msa0140380:CDS 35.0%
TCAGAAACCTGAAAAGGAAT+AGG + chr1_3:74632829-74632848 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG - chr1_3:74632828-74632847 Msa0140380:CDS 35.0%
TATTCCTCAGAAACCTGAAA+AGG + chr1_3:74632835-74632854 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG - chr1_3:74632881-74632900 Msa0140380:intron 35.0%
CAAGTTTGATTCAGAAACAC+AGG - chr1_3:74632914-74632933 Msa0140380:intron 35.0%
AGAATTCTAACTCTGAGCAA+CGG + chr1_3:74633020-74633039 None:intergenic 35.0%
CATCTTAGACCGAATGATAT+TGG + chr1_3:74633285-74633304 None:intergenic 35.0%
! AGATGCACTTCTTTTCTTCA+TGG - chr1_3:74633300-74633319 Msa0140380:CDS 35.0%
AGAGGTAGTAAAAATGGAGA+AGG - chr1_3:74633402-74633421 Msa0140380:intron 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG + chr1_3:74633463-74633482 None:intergenic 35.0%
! TTAGTATGTGTTTGGTTTCG+TGG - chr1_3:74633643-74633662 Msa0140380:intron 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG + chr1_3:74633678-74633697 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG - chr1_3:74633679-74633698 Msa0140380:intron 35.0%
TTGGTTAGAATCACTTCTTG+AGG + chr1_3:74633757-74633776 None:intergenic 35.0%
AGTGATTCTAACCAAAAGCT+AGG - chr1_3:74633762-74633781 Msa0140380:intron 35.0%
!! CTGGATTATTTTATGCTGAC+AGG - chr1_3:74633881-74633900 Msa0140380:intron 35.0%
TAGTCAACATTTCATACCCA+TGG + chr1_3:74634093-74634112 None:intergenic 35.0%
ATATATGCAGACTACAACTC+TGG - chr1_3:74634172-74634191 Msa0140380:CDS 35.0%
GATCTGCAACTTAATACCAA+AGG - chr1_3:74634251-74634270 Msa0140380:CDS 35.0%
GCAAAAGATGTTTCCTCTAA+AGG + chr1_3:74634828-74634847 None:intergenic 35.0%
! ACATCTTTTGCATCTGATTG+AGG - chr1_3:74634837-74634856 Msa0140380:intron 35.0%
TCTGATTGAGGTTCATAAAC+CGG - chr1_3:74634849-74634868 Msa0140380:intron 35.0%
!! AGGACAGCATATTATTTTGC+CGG + chr1_3:74634871-74634890 None:intergenic 35.0%
CATAAATTTACACTTGAGCC+TGG + chr1_3:74635011-74635030 None:intergenic 35.0%
TAAAAACACCCTCATTGTAC+AGG + chr1_3:74635067-74635086 None:intergenic 35.0%
TAATTCCAAAAGCAGCTACA+TGG + chr1_3:74635291-74635310 None:intergenic 35.0%
TCCATCTATCTGTAGAAAGG+GGG - chr1_3:74629855-74629874 Msa0140380:exon 40.0%
TAACGTGTTTGGTTGGACTT+TGG - chr1_3:74629945-74629964 Msa0140380:intron 40.0%
CTCATTAATCATGAACCCCA+GGG + chr1_3:74630169-74630188 None:intergenic 40.0%
TCTCATTAATCATGAACCCC+AGG + chr1_3:74630170-74630189 None:intergenic 40.0%
! AGACCCTGTAATCTGAAGTT+CGG - chr1_3:74630192-74630211 Msa0140380:intron 40.0%
GTTGCTCTTCTTCTTCTTCA+AGG - chr1_3:74630474-74630493 Msa0140380:intron 40.0%
CTTGATCTGGTAATTCTGAG+TGG + chr1_3:74630555-74630574 None:intergenic 40.0%
CACTCAGAATTACCAGATCA+AGG - chr1_3:74630553-74630572 Msa0140380:intron 40.0%
AATTACCAGATCAAGGGCAA+AGG - chr1_3:74630560-74630579 Msa0140380:intron 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG - chr1_3:74630567-74630586 Msa0140380:intron 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG + chr1_3:74630597-74630616 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG + chr1_3:74630598-74630617 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG - chr1_3:74630617-74630636 Msa0140380:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG - chr1_3:74630679-74630698 Msa0140380:CDS 40.0%
TGTTCCTCACCGTAAAAGAA+GGG - chr1_3:74630680-74630699 Msa0140380:CDS 40.0%
TTTGCTCGACCAAGTTCAAT+TGG + chr1_3:74631099-74631118 None:intergenic 40.0%
AAGTCAGCTGAAATTGCTAG+AGG - chr1_3:74631153-74631172 Msa0140380:intron 40.0%
AGTCAGCTGAAATTGCTAGA+GGG - chr1_3:74631154-74631173 Msa0140380:intron 40.0%
AACTCCTTTGGCCTGTAAAA+TGG + chr1_3:74631504-74631523 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG - chr1_3:74631565-74631584 Msa0140380:intron 40.0%
AACCAAAGTTACTGCAGCAA+TGG + chr1_3:74631651-74631670 None:intergenic 40.0%
AACATGGTCACTTACGTTGT+TGG + chr1_3:74631699-74631718 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG - chr1_3:74631740-74631759 Msa0140380:intron 40.0%
AAGCCACTAACTCACTAGAA+AGG - chr1_3:74631922-74631941 Msa0140380:CDS 40.0%
! TCACCTTTCTAGTGAGTTAG+TGG + chr1_3:74631928-74631947 None:intergenic 40.0%
TATCGATGTCTACAAAGGTC+AGG + chr1_3:74632051-74632070 None:intergenic 40.0%
CTGCAACTTCTCCATGTAAT+TGG + chr1_3:74632490-74632509 None:intergenic 40.0%
TGCGTGGAATTCTGATTGAT+TGG - chr1_3:74632529-74632548 Msa0140380:intron 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG - chr1_3:74632819-74632838 Msa0140380:CDS 40.0%
! GGTTTCTGAGGAATATAAGC+TGG - chr1_3:74632840-74632859 Msa0140380:CDS 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG + chr1_3:74632868-74632887 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG + chr1_3:74632882-74632901 None:intergenic 40.0%
TTGAGAGAAACCGATCAATG+AGG + chr1_3:74632894-74632913 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG + chr1_3:74633002-74633021 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG + chr1_3:74633019-74633038 None:intergenic 40.0%
ACAGTAAACTGAGGATCGAA+AGG + chr1_3:74633121-74633140 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG - chr1_3:74633120-74633139 Msa0140380:CDS 40.0%
ATCATCTCCACAGTAAACTG+AGG + chr1_3:74633130-74633149 None:intergenic 40.0%
AAGCAAAATTCTTCCACTCG+AGG + chr1_3:74633355-74633374 None:intergenic 40.0%
CAGATAACTGAAAACGCAGA+AGG + chr1_3:74633438-74633457 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG + chr1_3:74633464-74633483 None:intergenic 40.0%
CCACAACCAAAACATTTCTC+AGG - chr1_3:74633461-74633480 Msa0140380:intron 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG + chr1_3:74633586-74633605 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG - chr1_3:74633586-74633605 Msa0140380:intron 40.0%
GTGGTAGAGATAACCAAAAG+TGG - chr1_3:74633662-74633681 Msa0140380:intron 40.0%
CATTGCAAAATCAAACACGC+TGG - chr1_3:74633862-74633881 Msa0140380:intron 40.0%
! GCTCTGCTAAATAATTTGCC+AGG + chr1_3:74633972-74633991 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG + chr1_3:74634207-74634226 None:intergenic 40.0%
AAAACCAGTTGTTCTTGCAC+TGG - chr1_3:74634226-74634245 Msa0140380:CDS 40.0%
! AGCATTTTCAGTGTGACTAG+TGG + chr1_3:74634370-74634389 None:intergenic 40.0%
CACTGAAAATGCTACTCCAT+CGG - chr1_3:74634377-74634396 Msa0140380:exon 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG + chr1_3:74634396-74634415 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG + chr1_3:74634793-74634812 None:intergenic 40.0%
! TCTAAAGGGTACAGTACAAC+TGG + chr1_3:74634813-74634832 None:intergenic 40.0%
AGTTGTACTGTACCCTTTAG+AGG - chr1_3:74634812-74634831 Msa0140380:intron 40.0%
TGCTTCATGTGACAGTTCAA+TGG - chr1_3:74634946-74634965 Msa0140380:intron 40.0%
TCGGAATTTCCTGTACAATG+AGG - chr1_3:74635055-74635074 Msa0140380:intron 40.0%
CGGAATTTCCTGTACAATGA+GGG - chr1_3:74635056-74635075 Msa0140380:intron 40.0%
!! AACAGTGAGTTGAAGTACTG+AGG - chr1_3:74635218-74635237 Msa0140380:intron 40.0%
GAGAGAGAGAGAGAGAAGTA+GGG + chr1_3:74629679-74629698 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGT+AGG + chr1_3:74629680-74629699 None:intergenic 45.0%
TTCTCTCTCTCTCTCTCTCT+AGG - chr1_3:74629682-74629701 Msa0140380:three_prime_UTR 45.0%
ACCCCCTTTCTACAGATAGA+TGG + chr1_3:74629859-74629878 None:intergenic 45.0%
CGACCGAACTTCAGATTACA+GGG + chr1_3:74630198-74630217 None:intergenic 45.0%
TCGACCGAACTTCAGATTAC+AGG + chr1_3:74630199-74630218 None:intergenic 45.0%
CAAAACCTTTGCCCTTGATC+TGG + chr1_3:74630568-74630587 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG - chr1_3:74630566-74630585 Msa0140380:intron 45.0%
GACCCTCTTCGGAAAATGAA+GGG - chr1_3:74630592-74630611 Msa0140380:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG + chr1_3:74630678-74630697 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG + chr1_3:74630692-74630711 None:intergenic 45.0%
GTCAGCTGAAATTGCTAGAG+GGG - chr1_3:74631155-74631174 Msa0140380:intron 45.0%
GAGACCCTAGTAAAGAGAGT+AGG - chr1_3:74631310-74631329 Msa0140380:intron 45.0%
CACCATTGCTGCAGTAACTT+TGG - chr1_3:74631646-74631665 Msa0140380:intron 45.0%
GTGTGGTGTCTGTCATAACA+TGG + chr1_3:74631715-74631734 None:intergenic 45.0%
ACCTCTCCAAGTCCAAACAA+AGG - chr1_3:74631773-74631792 Msa0140380:intron 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG + chr1_3:74631777-74631796 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG - chr1_3:74632287-74632306 Msa0140380:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG - chr1_3:74632513-74632532 Msa0140380:intron 45.0%
ATCAGAATTCCACGCATGCT+TGG + chr1_3:74632525-74632544 None:intergenic 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG - chr1_3:74632539-74632558 Msa0140380:intron 45.0%
TGCAAGTAACACCAAGCAAC+TGG + chr1_3:74632942-74632961 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG + chr1_3:74633952-74633971 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG - chr1_3:74633951-74633970 Msa0140380:intron 45.0%
ACAGTTTCTACCTTCTCGTG+TGG - chr1_3:74634017-74634036 Msa0140380:intron 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG + chr1_3:74634073-74634092 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG + chr1_3:74634074-74634093 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG - chr1_3:74634073-74634092 Msa0140380:intron 45.0%
CAACCACTCAGAACATCCAT+GGG - chr1_3:74634074-74634093 Msa0140380:intron 45.0%
! ATACCCATGGATGTTCTGAG+TGG + chr1_3:74634080-74634099 None:intergenic 45.0%
TCTTCCAGTGCAAGAACAAC+TGG + chr1_3:74634233-74634252 None:intergenic 45.0%
AGCATGGAGAGAACAACCTT+TGG + chr1_3:74634270-74634289 None:intergenic 45.0%
CATGTGACAGTTCAATGGTG+TGG - chr1_3:74634951-74634970 Msa0140380:intron 45.0%
GGCAAAACTGTCTCCAAAAC+CGG - chr1_3:74634972-74634991 Msa0140380:intron 45.0%
CTAAGGACTCGATCATGACT+CGG - chr1_3:74635036-74635055 Msa0140380:intron 45.0%
!! CAAAGCCATGTAGCTGCTTT+TGG - chr1_3:74635283-74635302 Msa0140380:five_prime_UTR 45.0%
!! TATTATTATTACTTTATAAT+AGG - chr1_3:74632230-74632249 Msa0140380:intron 5.0%
!! ATTATTATTACTTTATAATA+GGG - chr1_3:74632231-74632250 Msa0140380:intron 5.0%
GAGTGGACGCTCTTCATCTT+TGG + chr1_3:74630538-74630557 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG - chr1_3:74630570-74630589 Msa0140380:CDS 50.0%
GGACCCTCTTCGGAAAATGA+AGG - chr1_3:74630591-74630610 Msa0140380:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG - chr1_3:74630685-74630704 Msa0140380:intron 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG - chr1_3:74632021-74632040 Msa0140380:CDS 50.0%
CAACAAAGTTCGAGTCACCG+AGG - chr1_3:74632120-74632139 Msa0140380:intron 50.0%
AAACACAGGCTCCAGTTGCT+TGG - chr1_3:74632928-74632947 Msa0140380:intron 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG - chr1_3:74633942-74633961 Msa0140380:intron 50.0%
CTGCTGTATTCCTTGCCAGA+TGG - chr1_3:74634046-74634065 Msa0140380:intron 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG + chr1_3:74634988-74635007 None:intergenic 50.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG - chr1_3:74630581-74630600 Msa0140380:CDS 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG + chr1_3:74630687-74630706 None:intergenic 55.0%
CCTCACCGTAAAAGAAGGGC+AGG - chr1_3:74630684-74630703 Msa0140380:CDS 55.0%
TACAAAGGTCAGGCGATCCG+AGG + chr1_3:74632041-74632060 None:intergenic 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG - chr1_3:74632551-74632570 Msa0140380:intron 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG - chr1_3:74632557-74632576 Msa0140380:intron 55.0%
AGAGATGTGTGCTCCTCGAG+TGG - chr1_3:74633339-74633358 Msa0140380:CDS 55.0%
TGAGTGGTTGAGGGTCCATC+TGG + chr1_3:74634064-74634083 None:intergenic 55.0%
TCACTCCTCACTGAGCGGGA+CGG + chr1_3:74629579-74629598 None:intergenic 60.0%
ACGCTCACTCCTCACTGAGC+GGG + chr1_3:74629583-74629602 None:intergenic 60.0%
CACGCTCACTCCTCACTGAG+CGG + chr1_3:74629584-74629603 None:intergenic 60.0%
ACTAAGTGGGGTCGGCTACC+AGG + chr1_3:74630937-74630956 None:intergenic 60.0%
GCAGAAGCAGCCACACGAGA+AGG + chr1_3:74634030-74634049 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG + chr1_3:74634059-74634078 None:intergenic 60.0%
ACCGGTGCAGTCACTGTTCC+AGG - chr1_3:74634990-74635009 Msa0140380:intron 60.0%
GCCTGGAACAGTGACTGCAC+CGG + chr1_3:74634994-74635013 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74629573 74635312 74629573 ID=Msa0140380;Name=Msa0140380
chr1_3 mRNA 74629573 74635312 74629573 ID=Msa0140380-mRNA-1;Parent=Msa0140380;Name=Msa0140380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=99|0.88|0.9|1|0.88|0.8|10|289|484
chr1_3 exon 74629573 74629924 74629573 ID=Msa0140380-mRNA-1:exon:26055;Parent=Msa0140380-mRNA-1
chr1_3 exon 74630569 74630703 74630569 ID=Msa0140380-mRNA-1:exon:26054;Parent=Msa0140380-mRNA-1
chr1_3 exon 74630790 74630982 74630790 ID=Msa0140380-mRNA-1:exon:26053;Parent=Msa0140380-mRNA-1
chr1_3 exon 74631403 74631555 74631403 ID=Msa0140380-mRNA-1:exon:26052;Parent=Msa0140380-mRNA-1
chr1_3 exon 74631911 74632044 74631911 ID=Msa0140380-mRNA-1:exon:26051;Parent=Msa0140380-mRNA-1
chr1_3 exon 74632325 74632417 74632325 ID=Msa0140380-mRNA-1:exon:26050;Parent=Msa0140380-mRNA-1
chr1_3 exon 74632744 74632877 74632744 ID=Msa0140380-mRNA-1:exon:26049;Parent=Msa0140380-mRNA-1
chr1_3 exon 74633091 74633373 74633091 ID=Msa0140380-mRNA-1:exon:26048;Parent=Msa0140380-mRNA-1
chr1_3 exon 74634112 74634447 74634112 ID=Msa0140380-mRNA-1:exon:26047;Parent=Msa0140380-mRNA-1
chr1_3 exon 74635283 74635312 74635283 ID=Msa0140380-mRNA-1:exon:26046;Parent=Msa0140380-mRNA-1
chr1_3 five_prime_UTR 74635283 74635312 74635283 ID=Msa0140380-mRNA-1:five_prime_utr;Parent=Msa0140380-mRNA-1
chr1_3 five_prime_UTR 74634379 74634447 74634379 ID=Msa0140380-mRNA-1:five_prime_utr;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74634112 74634378 74634112 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74633091 74633373 74633091 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74632744 74632877 74632744 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74632325 74632417 74632325 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74631911 74632044 74631911 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74631403 74631555 74631403 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74630790 74630982 74630790 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74630569 74630703 74630569 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 CDS 74629862 74629924 74629862 ID=Msa0140380-mRNA-1:cds;Parent=Msa0140380-mRNA-1
chr1_3 three_prime_UTR 74629573 74629861 74629573 ID=Msa0140380-mRNA-1:three_prime_utr;Parent=Msa0140380-mRNA-1
Gene Sequence

>Msa0140380

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACGTAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>Msa0140380

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNVSDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRKNATQCVKLYLVIQVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV*