AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383000 MtrunA17_Chr3g0138431 95.426 481 19 1 1 481 1 478 0.0 947
Msa0383000 MtrunA17_Chr1g0148681 58.099 463 138 7 17 477 9 417 0.0 518
Msa0383000 MtrunA17_Chr2g0332171 48.057 489 221 14 11 477 8 485 1.43e-129 384
Msa0383000 MtrunA17_Chr2g0332181 44.000 475 202 7 3 469 2 420 7.60e-124 368
Msa0383000 MtrunA17_Chr3g0125051 54.643 280 125 2 201 478 225 504 8.48e-104 319
Msa0383000 MtrunA17_Chr3g0125041 53.704 270 123 1 200 467 227 496 2.91e-103 318
Msa0383000 MtrunA17_Chr1g0152871 51.636 275 130 2 205 476 80 354 1.31e-93 288
Msa0383000 MtrunA17_Chr3g0134421 48.029 279 143 1 196 472 64 342 7.06e-86 268
Msa0383000 MtrunA17_Chr3g0134401 46.212 264 142 0 209 472 67 330 6.50e-81 254
Msa0383000 MtrunA17_Chr3g0134411 46.324 272 144 1 203 472 78 349 2.18e-79 251
Msa0383000 MtrunA17_Chr3g0134441 50.787 254 123 1 221 472 69 322 9.90e-75 238
Msa0383000 MtrunA17_Chr3g0134431 47.773 247 104 5 220 463 13 237 3.00e-62 203
Msa0383000 MtrunA17_Chr7g0255771 40.364 275 155 7 200 470 182 451 1.63e-58 200
Msa0383000 MtrunA17_Chr5g0406741 40.959 271 152 4 201 470 156 419 1.20e-57 196
Msa0383000 MtrunA17_Chr5g0441371 40.590 271 152 6 202 470 150 413 2.01e-57 196
Msa0383000 MtrunA17_Chr8g0370671 39.608 255 147 3 216 470 176 423 4.91e-55 190
Msa0383000 MtrunA17_Chr8g0357001 42.466 219 119 3 214 432 484 695 3.54e-49 179
Msa0383000 MtrunA17_Chr3g0102851 30.556 252 160 7 185 431 2 243 1.20e-25 106
Msa0383000 MtrunA17_Chr3g0103471 30.638 235 149 6 202 431 8 233 6.16e-25 104
Msa0383000 MtrunA17_Chr3g0102621 31.250 224 140 6 213 431 25 239 9.74e-25 103
Msa0383000 MtrunA17_Chr3g0102861 30.204 245 151 7 192 431 4 233 5.94e-24 101
Msa0383000 MtrunA17_Chr3g0102631 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa0383000 MtrunA17_Chr3g0102651 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa0383000 MtrunA17_Chr3g0102661 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa0383000 MtrunA17_Chr3g0102671 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa0383000 MtrunA17_Chr5g0418901 41.772 79 46 0 271 349 7 85 2.71e-19 82.8
Msa0383000 MtrunA17_Chr1g0161581 33.520 179 98 5 234 411 362 520 7.33e-18 86.3
Msa0383000 MtrunA17_Chr5g0398791 29.730 148 101 2 242 388 27 172 6.00e-16 75.9
Msa0383000 MtrunA17_Chr6g0462911 27.622 286 170 14 208 481 38 298 1.71e-14 74.3
Msa0383000 MtrunA17_Chr3g0133211 28.571 182 117 4 228 400 74 251 2.16e-14 74.7
Msa0383000 MtrunA17_Chr6g0462981 28.070 285 172 12 208 481 38 300 2.52e-13 70.9
Msa0383000 MtrunA17_Chr4g0041721 26.816 179 124 4 228 400 69 246 1.47e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383000 AT5G25380.4 51.363 477 169 10 10 477 19 441 6.62e-147 427
Msa0383000 AT5G11300.1 51.489 470 166 10 13 477 22 434 6.94e-147 427
Msa0383000 AT5G25380.3 50.420 476 169 8 10 477 19 435 1.86e-145 424
Msa0383000 AT5G25380.1 50.420 476 169 8 10 477 19 435 1.86e-145 424
Msa0383000 AT5G25380.2 50.327 459 162 7 10 461 19 418 6.54e-141 411
Msa0383000 AT1G80370.1 47.072 444 195 6 31 469 42 450 7.02e-129 382
Msa0383000 AT1G15570.1 48.463 423 187 7 62 477 52 450 4.67e-126 374
Msa0383000 AT5G11300.2 49.392 411 147 9 13 419 22 375 8.94e-119 355
Msa0383000 AT1G44110.1 55.147 272 122 0 196 467 174 445 5.26e-110 334
Msa0383000 AT5G43080.1 52.399 271 129 0 202 472 73 343 7.08e-100 304
Msa0383000 AT5G43080.2 52.768 271 123 1 202 472 73 338 5.90e-99 301
Msa0383000 AT1G47210.2 49.324 296 146 2 179 472 67 360 3.43e-98 300
Msa0383000 AT1G77390.1 52.500 280 131 2 200 477 162 441 1.22e-96 299
Msa0383000 AT1G47220.1 52.416 269 126 1 202 468 42 310 1.50e-92 284
Msa0383000 AT1G47230.1 48.905 274 138 1 201 472 80 353 1.56e-90 280
Msa0383000 AT1G47230.2 48.727 275 138 2 201 472 80 354 1.09e-88 276
Msa0383000 AT5G06150.1 40.278 288 161 6 193 479 158 435 6.68e-59 201
Msa0383000 AT1G20610.1 39.114 271 157 4 201 470 161 424 1.28e-55 191
Msa0383000 AT1G76310.1 40.146 274 155 5 199 470 159 425 3.72e-55 190
Msa0383000 AT3G11520.1 40.959 271 151 5 201 470 143 405 1.77e-53 185
Msa0383000 AT1G76310.2 43.404 235 124 5 199 431 159 386 2.52e-52 182
Msa0383000 AT3G11520.2 44.351 239 124 5 201 438 143 373 2.75e-52 181
Msa0383000 AT2G26760.1 40.769 260 143 7 201 457 114 365 4.11e-52 181
Msa0383000 AT1G16330.1 39.216 255 148 3 216 470 395 642 1.06e-49 180
Msa0383000 AT1G76310.3 36.424 302 155 6 199 470 159 453 2.64e-49 175
Msa0383000 AT4G37490.1 37.050 278 160 8 200 470 148 417 6.13e-49 174
Msa0383000 AT2G17620.1 40.672 268 151 4 201 467 155 415 3.44e-48 172
Msa0383000 AT4G35620.1 39.700 267 153 4 201 466 156 415 1.66e-47 170
Msa0383000 AT4G35620.2 42.672 232 125 4 201 431 156 380 6.41e-46 164
Msa0383000 AT5G06150.2 42.045 176 99 3 193 367 158 331 4.75e-39 145
Msa0383000 AT1G76310.4 45.029 171 91 3 199 367 159 328 9.47e-39 144
Msa0383000 AT1G20590.1 43.312 157 83 2 275 431 63 213 3.97e-34 129
Msa0383000 AT1G47210.1 49.219 128 61 2 179 304 67 192 3.62e-32 122
Msa0383000 AT1G34460.9 34.091 176 93 4 193 367 234 387 5.50e-22 99.0
Msa0383000 AT1G34460.6 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa0383000 AT1G34460.3 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa0383000 AT1G34460.8 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa0383000 AT1G34460.1 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa0383000 AT1G34460.7 34.091 176 93 4 193 367 248 401 6.42e-22 99.0
Msa0383000 AT1G34460.2 34.091 176 93 4 193 367 245 398 6.60e-22 99.0
Msa0383000 AT1G34460.4 34.091 176 93 4 193 367 245 398 6.60e-22 99.0
Msa0383000 AT1G34460.5 34.091 176 93 4 193 367 248 401 8.37e-22 98.6
Msa0383000 AT1G14750.1 34.969 163 96 4 247 405 384 540 6.56e-16 80.9
Msa0383000 AT1G14750.3 34.969 163 96 4 247 405 384 540 8.53e-16 80.5
Msa0383000 AT1G14750.2 34.969 163 96 4 247 405 216 372 9.22e-16 79.7
Msa0383000 AT1G14750.4 34.969 163 95 5 247 405 216 371 1.52e-14 75.9
Msa0383000 AT5G65420.1 25.957 235 157 8 182 403 5 235 9.02e-11 63.5

Find 111 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 3_1:-85784201 Msa0383000:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 3_1:-85785715 Msa0383000:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 3_1:+85785518 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 3_1:+85784166 None:intergenic
CAAAGCCATGTAGCTGCTTT+TGG 0.238844 3_1:-85780991 Msa0383000:three_prime_UTR
TGTAAATTTATGCATTTCTA+AGG 0.255446 3_1:-85781255 Msa0383000:exon
AACAGTGACTGCACCGGTTT+TGG 0.269524 3_1:+85781289 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 3_1:+85783788 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 3_1:+85782807 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 3_1:+85785746 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 3_1:+85784490 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 3_1:-85782323 Msa0383000:CDS
GTTGCTCTTCTTCTTCTTCA+AGG 0.323825 3_1:-85785807 Msa0383000:five_prime_UTR
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 3_1:-85781284 Msa0383000:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 3_1:-85782332 Msa0383000:intron
ATTTGCGTTTGAATTAGAAT+TGG 0.346535 3_1:-85785830 Msa0383000:five_prime_UTR
TTCTCCATGTAATTGGTTGA+TGG 0.359361 3_1:+85783795 None:intergenic
CACCATTGCTGCAGTAACTT+TGG 0.388234 3_1:-85784629 Msa0383000:CDS
CTACGTAACTAATGAGTAAA+GGG 0.406984 3_1:+85781165 None:intergenic
TGCAAGTAACACCAAGCAAC+TGG 0.415916 3_1:+85783336 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 3_1:+85785716 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 3_1:+85784496 None:intergenic
ATGGCTTTGTTGAATTATAA+CGG 0.426708 3_1:+85781005 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 3_1:+85782044 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 3_1:+85783410 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 3_1:-85785664 Msa0383000:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 3_1:+85782213 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 3_1:-85783746 Msa0383000:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 3_1:-85782102 Msa0383000:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 3_1:-85781302 Msa0383000:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 3_1:+85782070 None:intergenic
AACATGGTCACTTATGTTGT+TGG 0.450701 3_1:+85784579 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 3_1:+85784227 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 3_1:+85782203 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 3_1:+85781266 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 3_1:-85782228 Msa0383000:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 3_1:-85782813 Msa0383000:intron
ATCAGAATTCCACGCATGCT+TGG 0.476428 3_1:+85783753 None:intergenic
TTTGCGTTTGAATTAGAATT+GGG 0.476481 3_1:-85785829 Msa0383000:five_prime_UTR
AGTTGTATCAACATGTTACA+TGG 0.477451 3_1:+85781081 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 3_1:-85785728 Msa0383000:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 3_1:+85784714 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 3_1:+85783396 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 3_1:-85781328 Msa0383000:intron
ACTACGTAACTAATGAGTAA+AGG 0.496801 3_1:+85781164 None:intergenic
TGTAAGAAGATTGTGCTGCT+TGG 0.497059 3_1:+85782691 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 3_1:-85785602 Msa0383000:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 3_1:-85782048 Msa0383000:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 3_1:-85785597 Msa0383000:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 3_1:-85783435 Msa0383000:CDS
GAACTTTGTTGTATATATCA+GGG 0.514973 3_1:+85784167 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 3_1:-85783739 Msa0383000:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 3_1:-85784266 Msa0383000:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 3_1:-85784710 Msa0383000:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 3_1:+85782007 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 3_1:-85783394 Msa0383000:CDS
TATATTTCTCACGTATAGCA+TGG 0.531941 3_1:+85781991 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 3_1:+85782204 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 3_1:-85782201 Msa0383000:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 3_1:-85783347 Msa0383000:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 3_1:-85784665 Msa0383000:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 3_1:+85782247 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 3_1:+85784598 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 3_1:-85785690 Msa0383000:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 3_1:+85784501 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 3_1:+85784627 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 3_1:-85783799 Msa0383000:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 3_1:-85784254 Msa0383000:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 3_1:-85783361 Msa0383000:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 3_1:-85784695 Msa0383000:CDS
AGCAGCACAATCTTCTTACA+AGG 0.568751 3_1:-85782688 Msa0383000:intron
GCTCTGCTAAATAATTTGCC+AGG 0.570353 3_1:+85782305 None:intergenic
TAATTCCAAAAGCAGCTACA+TGG 0.573264 3_1:+85780986 None:intergenic
CTAAGGACTCGATCATGACT+CGG 0.574320 3_1:-85781238 Msa0383000:three_prime_UTR
AACTTTGTTGTATATATCAG+GGG 0.581055 3_1:+85784168 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 3_1:+85785543 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 3_1:-85781979 Msa0383000:intron
CGGAATTTCCTGTACAATGA+GGG 0.593704 3_1:-85781218 Msa0383000:three_prime_UTR
ACGCTCACTCCTCACTGAGC+GGG 0.595882 3_1:+85786706 None:intergenic
GCCTGGAACAGTGACTGCAC+CGG 0.595943 3_1:+85781283 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 3_1:-85785689 Msa0383000:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 3_1:-85782023 Msa0383000:CDS
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 3_1:-85782257 Msa0383000:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 3_1:-85783736 Msa0383000:intron
TACAAAGGTCAGGCGATCCG+AGG 0.611523 3_1:+85784237 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 3_1:-85782890 Msa0383000:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 3_1:+85782218 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 3_1:-85785721 Msa0383000:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 3_1:+85783384 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 3_1:+85782325 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 3_1:+85782839 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 3_1:-85785727 Msa0383000:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 3_1:-85784535 Msa0383000:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 3_1:+85782922 None:intergenic
TCACTCCTCACTGAGCGGGA+CGG 0.635592 3_1:+85786710 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 3_1:-85782200 Msa0383000:intron
TCGGAATTTCCTGTACAATG+AGG 0.638297 3_1:-85781219 Msa0383000:three_prime_UTR
ACATTCTTGCATTGAAAGTG+TGG 0.640397 3_1:+85784546 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 3_1:-85785601 Msa0383000:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 3_1:-85784262 Msa0383000:CDS
CACGCTCACTCCTCACTGAG+CGG 0.646120 3_1:+85786705 None:intergenic
AACAGTGAGTTGAAGTACTG+AGG 0.651840 3_1:-85781056 Msa0383000:three_prime_UTR
GATATTTCTCCAAGCATGCG+TGG 0.654313 3_1:-85783762 Msa0383000:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 3_1:+85785729 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 3_1:-85784502 Msa0383000:intron
ATACCCATGGATGTTCTGAG+TGG 0.668616 3_1:+85782197 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 3_1:-85782935 Msa0383000:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 3_1:-85781323 Msa0383000:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 3_1:+85784563 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 3_1:-85785596 Msa0383000:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 3_1:-85784155 Msa0383000:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAT+TGG + chr3_1:85781317-85781336 None:intergenic 0.0%
!!! ATTTAATTAATTTGATTGAT+TGG - chr3_1:85781423-85781442 Msa0383000:intron 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG + chr3_1:85782608-85782627 None:intergenic 10.0%
!! ATAATATAAAAAAAGTTACT+AGG - chr3_1:85783318-85783337 Msa0383000:intron 10.0%
!! ATTAATACTACTAATTATAA+TGG + chr3_1:85785923-85785942 None:intergenic 10.0%
!! GATAAAATGTAAAAAATTGT+TGG + chr3_1:85781513-85781532 None:intergenic 15.0%
!!! AATTGGTACATTTTATTTTA+TGG + chr3_1:85782502-85782521 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG + chr3_1:85782609-85782628 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG + chr3_1:85783313-85783332 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG + chr3_1:85783314-85783333 None:intergenic 15.0%
!! GATTGTTTAATAATGAATTA+CGG + chr3_1:85783573-85783592 None:intergenic 15.0%
!!! TAAGTACTATTTTTTTGTAA+TGG - chr3_1:85784398-85784417 Msa0383000:intron 15.0%
!!! AATTTAACTTATTATGTGTT+TGG - chr3_1:85785058-85785077 Msa0383000:intron 15.0%
!! TATTTATATCTTCTAAACAA+AGG + chr3_1:85785550-85785569 None:intergenic 15.0%
!! TTAGAAAAAAGAGAGTAATT+GGG + chr3_1:85781064-85781083 None:intergenic 20.0%
!! AAAATGTAAAAAATTGTTGG+AGG + chr3_1:85781510-85781529 None:intergenic 20.0%
!!! ATTTTCTAAAAGTCAAGATT+TGG - chr3_1:85781671-85781690 Msa0383000:intron 20.0%
!!! TTTTCTAAAAGTCAAGATTT+GGG - chr3_1:85781672-85781691 Msa0383000:intron 20.0%
!! ATAATAACGAAGAAGAAATA+CGG - chr3_1:85781725-85781744 Msa0383000:intron 20.0%
!! ATCAATATCACCATATAATT+AGG - chr3_1:85782233-85782252 Msa0383000:CDS 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG + chr3_1:85782266-85782285 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG - chr3_1:85782279-85782298 Msa0383000:CDS 20.0%
!! TATGATAGAATAGAACATTA+TGG - chr3_1:85782316-85782335 Msa0383000:CDS 20.0%
!! TATTGAAATAAACCTTTGTT+TGG + chr3_1:85783210-85783229 None:intergenic 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG - chr3_1:85783247-85783266 Msa0383000:intron 20.0%
!! GATAAAATATCTTAGAAGTT+TGG - chr3_1:85783365-85783384 Msa0383000:CDS 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG + chr3_1:85783810-85783829 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG - chr3_1:85783853-85783872 Msa0383000:intron 20.0%
!! ATAAGTTAAATTGTAGATAG+TGG + chr3_1:85785050-85785069 None:intergenic 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG - chr3_1:85785347-85785366 Msa0383000:intron 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG + chr3_1:85786319-85786338 None:intergenic 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG - chr3_1:85786317-85786336 Msa0383000:intron 20.0%
!! TGTAAATTTATGCATTTCTA+AGG - chr3_1:85786442-85786461 Msa0383000:intron 20.0%
! TAATATAAGATAGAGTTGAG+AGG + chr3_1:85781034-85781053 None:intergenic 25.0%
! GTTAGAAAAAAGAGAGTAAT+TGG + chr3_1:85781065-85781084 None:intergenic 25.0%
! ACAAAATTGGATAGAATTAG+AGG + chr3_1:85781185-85781204 None:intergenic 25.0%
!! CTACATTACATTGTATTTTC+AGG - chr3_1:85781225-85781244 Msa0383000:three_prime_UTR 25.0%
! ATAATGGTAAATAAAGAACG+AGG + chr3_1:85781474-85781493 None:intergenic 25.0%
! AGGTGCAGAAATAAAAATAA+TGG + chr3_1:85781490-85781509 None:intergenic 25.0%
!! AAATCAACATTTTTAACCCT+GGG - chr3_1:85781566-85781585 Msa0383000:intron 25.0%
!! TTTCTAAAAGTCAAGATTTG+GGG - chr3_1:85781673-85781692 Msa0383000:intron 25.0%
!!! TAATAGTAGCATTGTTTTGT+TGG - chr3_1:85781774-85781793 Msa0383000:intron 25.0%
!!! TAATGTCTTGTTTGAAAAAC+AGG - chr3_1:85781832-85781851 Msa0383000:intron 25.0%
! ATTTGCGTTTGAATTAGAAT+TGG - chr3_1:85781867-85781886 Msa0383000:intron 25.0%
! TTTGCGTTTGAATTAGAATT+GGG - chr3_1:85781868-85781887 Msa0383000:intron 25.0%
!! TGTTAAACAATCCAATTTTC+AGG - chr3_1:85782168-85782187 Msa0383000:intron 25.0%
! ATGAATTTCGTGACAAAATT+GGG + chr3_1:85782201-85782220 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG - chr3_1:85782291-85782310 Msa0383000:CDS 25.0%
!! TTTGTTATCACCATATCATT+AGG - chr3_1:85782390-85782409 Msa0383000:intron 25.0%
! ACTATCATTTCCTAATGATA+TGG + chr3_1:85782403-85782422 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG - chr3_1:85782507-85782526 Msa0383000:intron 25.0%
! AATAGATTTGCCTTCAAATT+TGG - chr3_1:85782544-85782563 Msa0383000:intron 25.0%
! ATAGATTTGCCTTCAAATTT+GGG - chr3_1:85782545-85782564 Msa0383000:intron 25.0%
! AAATTGTAGAATCTCATCTT+AGG - chr3_1:85782686-85782705 Msa0383000:intron 25.0%
! CTGTAAAATGGATAACTAAT+CGG + chr3_1:85782914-85782933 None:intergenic 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG + chr3_1:85782951-85782970 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG - chr3_1:85783431-85783450 Msa0383000:CDS 25.0%
! AGACATCGATAAAAAGTTAA+AGG - chr3_1:85783482-85783501 Msa0383000:intron 25.0%
! AGTTAAAGGATTCTCAAATT+TGG - chr3_1:85783496-85783515 Msa0383000:intron 25.0%
!! AACTTTGTTGTATATATCAG+GGG + chr3_1:85783532-85783551 None:intergenic 25.0%
!! GAACTTTGTTGTATATATCA+GGG + chr3_1:85783533-85783552 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG + chr3_1:85783800-85783819 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG + chr3_1:85784054-85784073 None:intergenic 25.0%
! TAGATGAGAATTCTTTGATA+AGG + chr3_1:85784060-85784079 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG + chr3_1:85784086-85784105 None:intergenic 25.0%
! CAAAAACATAGTTGAATGAT+AGG - chr3_1:85784092-85784111 Msa0383000:intron 25.0%
! ATAGGATATATACAATGTGA+TGG - chr3_1:85784110-85784129 Msa0383000:intron 25.0%
! ACTTCAACAAACTGTAATTA+AGG + chr3_1:85784190-85784209 None:intergenic 25.0%
!! TCTTTTTGAACTATGAACTA+AGG - chr3_1:85784476-85784495 Msa0383000:intron 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG + chr3_1:85784585-85784604 None:intergenic 25.0%
! ATATTGGGAAAAAACATACA+TGG + chr3_1:85784692-85784711 None:intergenic 25.0%
!!! TGTTTTTTCCCAATATCATT+CGG - chr3_1:85784696-85784715 Msa0383000:CDS 25.0%
! TAATACATACACAAAAGAAG+AGG - chr3_1:85784807-85784826 Msa0383000:intron 25.0%
! AAAAGAAGAGGTAGTAAAAA+TGG - chr3_1:85784819-85784838 Msa0383000:intron 25.0%
! TTGATCTATTATTGTCTTTC+AGG - chr3_1:85784975-85784994 Msa0383000:intron 25.0%
! TGAGAAATATAAACATGAGA+AGG - chr3_1:85785718-85785737 Msa0383000:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG + chr3_1:85785828-85785847 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG - chr3_1:85786021-85786040 Msa0383000:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG + chr3_1:85786025-85786044 None:intergenic 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG + chr3_1:85786314-85786333 None:intergenic 25.0%
!! AAGTAGAATACTTCATTTTG+AGG - chr3_1:85786666-85786685 Msa0383000:intron 25.0%
!!! ATGGCTTTGTTGAATTATAA+CGG + chr3_1:85786695-85786714 None:intergenic 25.0%
AAAAAAGAGAGTAATTGGGA+TGG + chr3_1:85781060-85781079 None:intergenic 30.0%
TCAGATCTAGACAACAAAAT+TGG + chr3_1:85781198-85781217 None:intergenic 30.0%
AAGCATGAAATGAAAATGCT+TGG - chr3_1:85781336-85781355 Msa0383000:intron 30.0%
!!! CTTGGTTTTTTTAACGTGTT+TGG - chr3_1:85781354-85781373 Msa0383000:intron 30.0%
!!! GTTTTTTTAACGTGTTTGGT+TGG - chr3_1:85781358-85781377 Msa0383000:intron 30.0%
! TTTGATTGATTGGTTCAACA+TGG - chr3_1:85781433-85781452 Msa0383000:intron 30.0%
! GAAATCAACATTTTTAACCC+TGG - chr3_1:85781565-85781584 Msa0383000:intron 30.0%
! AATCAACATTTTTAACCCTG+GGG - chr3_1:85781567-85781586 Msa0383000:intron 30.0%
TGTTTAACACGTTTATCATG+TGG + chr3_1:85782157-85782176 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG + chr3_1:85782182-85782201 None:intergenic 30.0%
CATGAATTTCGTGACAAAAT+TGG + chr3_1:85782202-85782221 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG + chr3_1:85782246-85782265 None:intergenic 30.0%
GATTGATCTATCTAGGTAAT+TGG - chr3_1:85782449-85782468 Msa0383000:intron 30.0%
ACTTACATACCCAAATTTGA+AGG + chr3_1:85782557-85782576 None:intergenic 30.0%
AAGATTGTCCAATAGTTAAG+AGG - chr3_1:85782763-85782782 Msa0383000:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG - chr3_1:85782912-85782931 Msa0383000:CDS 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG + chr3_1:85782938-85782957 None:intergenic 30.0%
AGAATTGTCTACCATAAAGA+TGG - chr3_1:85783032-85783051 Msa0383000:intron 30.0%
!! TTTTGACTCTACCATCTTTA+TGG + chr3_1:85783046-85783065 None:intergenic 30.0%
! AATAAACCTTTGTTTGGACT+TGG + chr3_1:85783204-85783223 None:intergenic 30.0%
TGACATTGCAATTTAGCATA+TGG + chr3_1:85783282-85783301 None:intergenic 30.0%
! TTATCTTTCTAGTGAGTTAG+TGG + chr3_1:85783350-85783369 None:intergenic 30.0%
AGACAACATGACAGTAATTA+TGG + chr3_1:85783394-85783413 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG - chr3_1:85783435-85783454 Msa0383000:CDS 30.0%
! CTTTTTATCGATGTCTACAA+AGG + chr3_1:85783478-85783497 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG + chr3_1:85783534-85783553 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG - chr3_1:85783700-85783719 Msa0383000:intron 30.0%
AAGAATAGAGCAGAATCATT+AGG - chr3_1:85783821-85783840 Msa0383000:intron 30.0%
TGATAAGGTTATGGACAAAA+AGG + chr3_1:85784045-85784064 None:intergenic 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG + chr3_1:85784083-85784102 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG - chr3_1:85784138-85784157 Msa0383000:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG - chr3_1:85784159-85784178 Msa0383000:CDS 30.0%
!!! CTATTTTTTTGTAATGGTCC+TGG - chr3_1:85784404-85784423 Msa0383000:intron 30.0%
ACTATGAACTAAGGATATCT+AGG - chr3_1:85784485-85784504 Msa0383000:intron 30.0%
TCATTTAATCCGAATGCATT+TGG - chr3_1:85784631-85784650 Msa0383000:CDS 30.0%
TAACTATCACCAAATGCATT+CGG + chr3_1:85784643-85784662 None:intergenic 30.0%
ATCTTAGACCGAATGATATT+GGG + chr3_1:85784707-85784726 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG + chr3_1:85784893-85784912 None:intergenic 30.0%
! TTATTATGTGTTTGGTTTCG+TGG - chr3_1:85785066-85785085 Msa0383000:intron 30.0%
!! ATGGATTTTGACATGTTTGA+TGG - chr3_1:85785121-85785140 Msa0383000:intron 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG + chr3_1:85785199-85785218 None:intergenic 30.0%
TATATTTCTCACGTATAGCA+TGG + chr3_1:85785709-85785728 None:intergenic 30.0%
AACATTGGTCAACTGAAAAA+AGG + chr3_1:85785764-85785783 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG + chr3_1:85785779-85785798 None:intergenic 30.0%
TTGAAAGATGACTTACATTC+AGG - chr3_1:85785984-85786003 Msa0383000:intron 30.0%
TGAAAGATGACTTACATTCA+GGG - chr3_1:85785985-85786004 Msa0383000:intron 30.0%
TAGGAACAGAGATAGTATAT+AGG - chr3_1:85786040-85786059 Msa0383000:intron 30.0%
CACTCAATAATTGAGAATGT+TGG + chr3_1:85786096-85786115 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG + chr3_1:85786250-85786269 None:intergenic 30.0%
CTACGTAACTAATGAGTAAA+GGG + chr3_1:85786535-85786554 None:intergenic 30.0%
ACTACGTAACTAATGAGTAA+AGG + chr3_1:85786536-85786555 None:intergenic 30.0%
AGTTGTATCAACATGTTACA+TGG + chr3_1:85786619-85786638 None:intergenic 30.0%
GAAAATCTGAGTTCGAATCA+TGG + chr3_1:85781657-85781676 None:intergenic 35.0%
ACTCAGAATTACCAGATCAA+GGG - chr3_1:85781970-85781989 Msa0383000:intron 35.0%
! CTCAGAAGAAACAACCTTTT+TGG + chr3_1:85782050-85782069 None:intergenic 35.0%
ATTATGGCGTAATTTGATCC+TGG - chr3_1:85782332-85782351 Msa0383000:intron 35.0%
!!! AAGCTTTTTTCCACTAAGTG+GGG + chr3_1:85782365-85782384 None:intergenic 35.0%
!!! CAAGCTTTTTTCCACTAAGT+GGG + chr3_1:85782366-85782385 None:intergenic 35.0%
ACATGCAGATTGATCTATCT+AGG - chr3_1:85782442-85782461 Msa0383000:intron 35.0%
TTTGCTAGACCAAGTTCAAT+TGG + chr3_1:85782519-85782538 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG - chr3_1:85782689-85782708 Msa0383000:CDS 35.0%
CTAACCTACTCTCTTTACTA+GGG + chr3_1:85782739-85782758 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG + chr3_1:85782740-85782759 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG + chr3_1:85782774-85782793 None:intergenic 35.0%
! TTATCCATTTTACAGGCCAA+AGG - chr3_1:85782919-85782938 Msa0383000:CDS 35.0%
! TTGTGCTGATGAAACTTCAA+TGG + chr3_1:85782986-85783005 None:intergenic 35.0%
ACAAGAGGATGTTAAAGAGA+AGG - chr3_1:85783002-85783021 Msa0383000:intron 35.0%
TTGGACATACAATGTTCAGT+TGG + chr3_1:85783102-85783121 None:intergenic 35.0%
AACATGGTCACTTATGTTGT+TGG + chr3_1:85783121-85783140 None:intergenic 35.0%
ACATTCTTGCATTGAAAGTG+TGG + chr3_1:85783154-85783173 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG - chr3_1:85783295-85783314 Msa0383000:intron 35.0%
AATGAATTACGGACAAACCT+CGG + chr3_1:85783562-85783581 None:intergenic 35.0%
TGCAAAATGAAATATGCTCC+TGG + chr3_1:85783730-85783749 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG - chr3_1:85783898-85783917 Msa0383000:intron 35.0%
TTCTCCATGTAATTGGTTGA+TGG + chr3_1:85783905-85783924 None:intergenic 35.0%
!! AATTCTGATTGATTGGCTTG+TGG - chr3_1:85783958-85783977 Msa0383000:intron 35.0%
! TTACCATCAAGCTTTTGTTG+TGG - chr3_1:85784210-85784229 Msa0383000:CDS 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG - chr3_1:85784222-85784241 Msa0383000:CDS 35.0%
TCAGAAACCTGAAAAGGAAT+AGG + chr3_1:85784251-85784270 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG - chr3_1:85784250-85784269 Msa0383000:CDS 35.0%
TATTCCTCAGAAACCTGAAA+AGG + chr3_1:85784257-85784276 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG - chr3_1:85784303-85784322 Msa0383000:intron 35.0%
CAAGTTTGATTCAGAAACAC+AGG - chr3_1:85784336-85784355 Msa0383000:intron 35.0%
AGAATTCTAACTCTGAGCAA+CGG + chr3_1:85784443-85784462 None:intergenic 35.0%
CATCTTAGACCGAATGATAT+TGG + chr3_1:85784708-85784727 None:intergenic 35.0%
! AGATGCACTTCTTTTCTTCA+TGG - chr3_1:85784723-85784742 Msa0383000:CDS 35.0%
AGAGGTAGTAAAAATGGAGA+AGG - chr3_1:85784825-85784844 Msa0383000:intron 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG + chr3_1:85784886-85784905 None:intergenic 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG + chr3_1:85785101-85785120 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG - chr3_1:85785102-85785121 Msa0383000:intron 35.0%
TTGGTTAGAATCACTTCTTG+AGG + chr3_1:85785180-85785199 None:intergenic 35.0%
AGTGATTCTAACCAAAAGCT+AGG - chr3_1:85785185-85785204 Msa0383000:intron 35.0%
!! CTGGATTATTTTATGCTGAC+AGG - chr3_1:85785304-85785323 Msa0383000:intron 35.0%
TAGTCAACATTTCATACCCA+TGG + chr3_1:85785516-85785535 None:intergenic 35.0%
ATATATGCAGACTACAACTC+TGG - chr3_1:85785595-85785614 Msa0383000:CDS 35.0%
GATCTGCAACTTAATACCAA+AGG - chr3_1:85785674-85785693 Msa0383000:CDS 35.0%
! TCTAAAGGGTACAATACAAC+TGG + chr3_1:85786236-85786255 None:intergenic 35.0%
AGTTGTATTGTACCCTTTAG+AGG - chr3_1:85786235-85786254 Msa0383000:intron 35.0%
GCAAAAGATGTTTCCTCTAA+AGG + chr3_1:85786251-85786270 None:intergenic 35.0%
! ACATCTTTTGCATCTGATTG+AGG - chr3_1:85786260-85786279 Msa0383000:intron 35.0%
TCTGATTGAGGTTCATAAAC+CGG - chr3_1:85786272-85786291 Msa0383000:intron 35.0%
!! AGGACAGCATATTATTTTGC+CGG + chr3_1:85786294-85786313 None:intergenic 35.0%
CATAAATTTACACTTGAGCC+TGG + chr3_1:85786434-85786453 None:intergenic 35.0%
TAAAAACACCCTCATTGTAC+AGG + chr3_1:85786490-85786509 None:intergenic 35.0%
TAATTCCAAAAGCAGCTACA+TGG + chr3_1:85786714-85786733 None:intergenic 35.0%
TCTACAGATGGAAGGAAGAA+AGG + chr3_1:85781272-85781291 None:intergenic 40.0%
TCTTCCTTCCATCTGTAGAA+AGG - chr3_1:85781273-85781292 Msa0383000:CDS 40.0%
CTTCCTTCCATCTGTAGAAA+GGG - chr3_1:85781274-85781293 Msa0383000:CDS 40.0%
TTCCTTCCATCTGTAGAAAG+GGG - chr3_1:85781275-85781294 Msa0383000:CDS 40.0%
TAACGTGTTTGGTTGGACTT+TGG - chr3_1:85781365-85781384 Msa0383000:intron 40.0%
CTCATTAATCATGAACCCCA+GGG + chr3_1:85781585-85781604 None:intergenic 40.0%
TCTCATTAATCATGAACCCC+AGG + chr3_1:85781586-85781605 None:intergenic 40.0%
! AGACCCTGTAATCTGAAGTT+CGG - chr3_1:85781608-85781627 Msa0383000:intron 40.0%
GTTGCTCTTCTTCTTCTTCA+AGG - chr3_1:85781890-85781909 Msa0383000:intron 40.0%
CTTGATCTGGTAATTCTGAG+TGG + chr3_1:85781971-85781990 None:intergenic 40.0%
CACTCAGAATTACCAGATCA+AGG - chr3_1:85781969-85781988 Msa0383000:intron 40.0%
AATTACCAGATCAAGGGCAA+AGG - chr3_1:85781976-85781995 Msa0383000:intron 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG - chr3_1:85781983-85782002 Msa0383000:CDS 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG + chr3_1:85782013-85782032 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG + chr3_1:85782014-85782033 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG - chr3_1:85782033-85782052 Msa0383000:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG - chr3_1:85782095-85782114 Msa0383000:CDS 40.0%
TGTTCCTCACCGTAAAAGAA+GGG - chr3_1:85782096-85782115 Msa0383000:intron 40.0%
!!! TTTTTTCCACTAAGTGGGGT+CGG + chr3_1:85782361-85782380 None:intergenic 40.0%
!!! CCAAGCTTTTTTCCACTAAG+TGG + chr3_1:85782367-85782386 None:intergenic 40.0%
CCACTTAGTGGAAAAAAGCT+TGG - chr3_1:85782364-85782383 Msa0383000:intron 40.0%
AAGTCAGCTGAAATTGCTAG+AGG - chr3_1:85782573-85782592 Msa0383000:intron 40.0%
AGTCAGCTGAAATTGCTAGA+GGG - chr3_1:85782574-85782593 Msa0383000:intron 40.0%
AACTCCTTTGGCCTGTAAAA+TGG + chr3_1:85782926-85782945 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG - chr3_1:85782987-85783006 Msa0383000:intron 40.0%
AACCAAAGTTACTGCAGCAA+TGG + chr3_1:85783073-85783092 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG - chr3_1:85783162-85783181 Msa0383000:intron 40.0%
TATCGATGTCTACAAAGGTC+AGG + chr3_1:85783473-85783492 None:intergenic 40.0%
CTGCAACTTCTCCATGTAAT+TGG + chr3_1:85783912-85783931 None:intergenic 40.0%
TGCGTGGAATTCTGATTGAT+TGG - chr3_1:85783951-85783970 Msa0383000:intron 40.0%
AAGCCACAACAAAAGCTTGA+TGG + chr3_1:85784216-85784235 None:intergenic 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG - chr3_1:85784241-85784260 Msa0383000:CDS 40.0%
! GGTTTCTGAGGAATATAAGC+TGG - chr3_1:85784262-85784281 Msa0383000:CDS 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG + chr3_1:85784290-85784309 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG + chr3_1:85784304-85784323 None:intergenic 40.0%
TTGAGAGAAACCGATCAATG+AGG + chr3_1:85784316-85784335 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG + chr3_1:85784425-85784444 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG + chr3_1:85784442-85784461 None:intergenic 40.0%
ACAGTAAACTGAGGATCGAA+AGG + chr3_1:85784544-85784563 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG - chr3_1:85784543-85784562 Msa0383000:CDS 40.0%
ATCATCTCCACAGTAAACTG+AGG + chr3_1:85784553-85784572 None:intergenic 40.0%
AAGCAAAATTCTTCCACTCG+AGG + chr3_1:85784778-85784797 None:intergenic 40.0%
CAGATAACTGAAAACGCAGA+AGG + chr3_1:85784861-85784880 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG + chr3_1:85784887-85784906 None:intergenic 40.0%
CCACAACCAAAACATTTCTC+AGG - chr3_1:85784884-85784903 Msa0383000:intron 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG + chr3_1:85785009-85785028 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG - chr3_1:85785009-85785028 Msa0383000:intron 40.0%
GTGGTAGAGATAACCAAAAG+TGG - chr3_1:85785085-85785104 Msa0383000:intron 40.0%
CATTGCAAAATCAAACACGC+TGG - chr3_1:85785285-85785304 Msa0383000:intron 40.0%
! GCTCTGCTAAATAATTTGCC+AGG + chr3_1:85785395-85785414 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG + chr3_1:85785630-85785649 None:intergenic 40.0%
AAAACCAGTTGTTCTTGCAC+TGG - chr3_1:85785649-85785668 Msa0383000:CDS 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG + chr3_1:85785819-85785838 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG + chr3_1:85786216-85786235 None:intergenic 40.0%
TGCTTCATGTGACAGTTCAA+TGG - chr3_1:85786369-85786388 Msa0383000:intron 40.0%
TCGGAATTTCCTGTACAATG+AGG - chr3_1:85786478-85786497 Msa0383000:intron 40.0%
CGGAATTTCCTGTACAATGA+GGG - chr3_1:85786479-85786498 Msa0383000:intron 40.0%
!! AACAGTGAGTTGAAGTACTG+AGG - chr3_1:85786641-85786660 Msa0383000:intron 40.0%
GAGAGAGAGAGAAGGAAGTA+GGG + chr3_1:85781087-85781106 None:intergenic 45.0%
AGAGAGAGAGAGAAGGAAGT+AGG + chr3_1:85781088-85781107 None:intergenic 45.0%
TCCTTCCATCTGTAGAAAGG+GGG - chr3_1:85781276-85781295 Msa0383000:CDS 45.0%
TTTGACCCCCTTTCTACAGA+TGG + chr3_1:85781284-85781303 None:intergenic 45.0%
CGACCGAACTTCAGATTACA+GGG + chr3_1:85781614-85781633 None:intergenic 45.0%
TCGACCGAACTTCAGATTAC+AGG + chr3_1:85781615-85781634 None:intergenic 45.0%
CAAAACCTTTGCCCTTGATC+TGG + chr3_1:85781984-85782003 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG - chr3_1:85781982-85782001 Msa0383000:CDS 45.0%
GACCCTCTTCGGAAAATGAA+GGG - chr3_1:85782008-85782027 Msa0383000:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG + chr3_1:85782094-85782113 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG + chr3_1:85782108-85782127 None:intergenic 45.0%
GTCAGCTGAAATTGCTAGAG+GGG - chr3_1:85782575-85782594 Msa0383000:intron 45.0%
TTAGGTGGTAGAGACATGTG+TGG - chr3_1:85782704-85782723 Msa0383000:intron 45.0%
GAGACCCTAGTAAAGAGAGT+AGG - chr3_1:85782732-85782751 Msa0383000:intron 45.0%
CACCATTGCTGCAGTAACTT+TGG - chr3_1:85783068-85783087 Msa0383000:intron 45.0%
GTGTGGTGTCTGTCATAACA+TGG + chr3_1:85783137-85783156 None:intergenic 45.0%
ACCTCTCCAAGTCCAAACAA+AGG - chr3_1:85783195-85783214 Msa0383000:intron 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG + chr3_1:85783199-85783218 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG - chr3_1:85783709-85783728 Msa0383000:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG - chr3_1:85783935-85783954 Msa0383000:intron 45.0%
ATCAGAATTCCACGCATGCT+TGG + chr3_1:85783947-85783966 None:intergenic 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG - chr3_1:85783961-85783980 Msa0383000:intron 45.0%
TGCAAGTAACACCAAGCAAC+TGG + chr3_1:85784364-85784383 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG + chr3_1:85785375-85785394 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG - chr3_1:85785374-85785393 Msa0383000:intron 45.0%
ACAGTTTCTACCTTCTCGTG+TGG - chr3_1:85785440-85785459 Msa0383000:intron 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG + chr3_1:85785496-85785515 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG + chr3_1:85785497-85785516 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG - chr3_1:85785496-85785515 Msa0383000:intron 45.0%
CAACCACTCAGAACATCCAT+GGG - chr3_1:85785497-85785516 Msa0383000:intron 45.0%
! ATACCCATGGATGTTCTGAG+TGG + chr3_1:85785503-85785522 None:intergenic 45.0%
TCTTCCAGTGCAAGAACAAC+TGG + chr3_1:85785656-85785675 None:intergenic 45.0%
AGCATGGAGAGAACAACCTT+TGG + chr3_1:85785693-85785712 None:intergenic 45.0%
!! AGCATTTTCGGTGTGACTAG+TGG + chr3_1:85785793-85785812 None:intergenic 45.0%
CACCGAAAATGCTACTCCAT+CGG - chr3_1:85785800-85785819 Msa0383000:five_prime_UTR 45.0%
! CACCGATGGAGTAGCATTTT+CGG + chr3_1:85785805-85785824 None:intergenic 45.0%
CATGTGACAGTTCAATGGTG+TGG - chr3_1:85786374-85786393 Msa0383000:intron 45.0%
GGCAAAACTGTCTCCAAAAC+CGG - chr3_1:85786395-85786414 Msa0383000:intron 45.0%
CTAAGGACTCGATCATGACT+CGG - chr3_1:85786459-85786478 Msa0383000:intron 45.0%
!! CAAAGCCATGTAGCTGCTTT+TGG - chr3_1:85786706-85786725 Msa0383000:five_prime_UTR 45.0%
!! TATTATTATTACTTTATAAT+AGG - chr3_1:85783652-85783671 Msa0383000:intron 5.0%
!! ATTATTATTACTTTATAATA+GGG - chr3_1:85783653-85783672 Msa0383000:intron 5.0%
GAGAGAGAGAGAGAGAGAGA+AGG + chr3_1:85781095-85781114 None:intergenic 50.0%
CTCTCTCTCTCTCTCTCTCT+AGG - chr3_1:85781096-85781115 Msa0383000:three_prime_UTR 50.0%
ACCCCCTTTCTACAGATGGA+AGG + chr3_1:85781280-85781299 None:intergenic 50.0%
GAGTGGACGCTCTTCATCTT+TGG + chr3_1:85781954-85781973 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG - chr3_1:85781986-85782005 Msa0383000:CDS 50.0%
GGACCCTCTTCGGAAAATGA+AGG - chr3_1:85782007-85782026 Msa0383000:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG - chr3_1:85782101-85782120 Msa0383000:intron 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG - chr3_1:85783443-85783462 Msa0383000:intron 50.0%
CAACAAAGTTCGAGTCACCG+AGG - chr3_1:85783542-85783561 Msa0383000:intron 50.0%
AAACACAGGCTCCAGTTGCT+TGG - chr3_1:85784350-85784369 Msa0383000:intron 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG - chr3_1:85785365-85785384 Msa0383000:intron 50.0%
CTGCTGTATTCCTTGCCAGA+TGG - chr3_1:85785469-85785488 Msa0383000:intron 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG + chr3_1:85786411-85786430 None:intergenic 50.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG - chr3_1:85781997-85782016 Msa0383000:CDS 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG + chr3_1:85782103-85782122 None:intergenic 55.0%
CCTCACCGTAAAAGAAGGGC+AGG - chr3_1:85782100-85782119 Msa0383000:intron 55.0%
TACAAAGGTCAGGCGATCCG+AGG + chr3_1:85783463-85783482 None:intergenic 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG - chr3_1:85783973-85783992 Msa0383000:intron 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG - chr3_1:85783979-85783998 Msa0383000:intron 55.0%
AGAGATGTGTGCTCCTCGAG+TGG - chr3_1:85784762-85784781 Msa0383000:CDS 55.0%
TGAGTGGTTGAGGGTCCATC+TGG + chr3_1:85785487-85785506 None:intergenic 55.0%
TCACTCCTCACTGAGCGGGA+CGG + chr3_1:85780990-85781009 None:intergenic 60.0%
ACGCTCACTCCTCACTGAGC+GGG + chr3_1:85780994-85781013 None:intergenic 60.0%
CACGCTCACTCCTCACTGAG+CGG + chr3_1:85780995-85781014 None:intergenic 60.0%
ACTAAGTGGGGTCGGCTACC+AGG + chr3_1:85782353-85782372 None:intergenic 60.0%
TGGTAGCCGACCCCACTTAG+TGG - chr3_1:85782352-85782371 Msa0383000:intron 60.0%
GCAGAAGCAGCCACACGAGA+AGG + chr3_1:85785453-85785472 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG + chr3_1:85785482-85785501 None:intergenic 60.0%
ACCGGTGCAGTCACTGTTCC+AGG - chr3_1:85786413-85786432 Msa0383000:intron 60.0%
GCCTGGAACAGTGACTGCAC+CGG + chr3_1:85786417-85786436 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85780984 85786735 85780984 ID=Msa0383000;Name=Msa0383000
chr3_1 mRNA 85780984 85786735 85780984 ID=Msa0383000-mRNA-1;Parent=Msa0383000;Name=Msa0383000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=99|1|1|1|0.9|0.81|11|289|481
chr3_1 exon 85780984 85781335 85780984 ID=Msa0383000-mRNA-1:exon:22586;Parent=Msa0383000-mRNA-1
chr3_1 exon 85781980 85782114 85781980 ID=Msa0383000-mRNA-1:exon:22585;Parent=Msa0383000-mRNA-1
chr3_1 exon 85782201 85782350 85782201 ID=Msa0383000-mRNA-1:exon:22584;Parent=Msa0383000-mRNA-1
chr3_1 exon 85782689 85782722 85782689 ID=Msa0383000-mRNA-1:exon:22583;Parent=Msa0383000-mRNA-1
chr3_1 exon 85782814 85782966 85782814 ID=Msa0383000-mRNA-1:exon:22582;Parent=Msa0383000-mRNA-1
chr3_1 exon 85783323 85783456 85783323 ID=Msa0383000-mRNA-1:exon:22581;Parent=Msa0383000-mRNA-1
chr3_1 exon 85783737 85783829 85783737 ID=Msa0383000-mRNA-1:exon:22580;Parent=Msa0383000-mRNA-1
chr3_1 exon 85784156 85784289 85784156 ID=Msa0383000-mRNA-1:exon:22579;Parent=Msa0383000-mRNA-1
chr3_1 exon 85784503 85784785 85784503 ID=Msa0383000-mRNA-1:exon:22578;Parent=Msa0383000-mRNA-1
chr3_1 exon 85785530 85785865 85785530 ID=Msa0383000-mRNA-1:exon:22577;Parent=Msa0383000-mRNA-1
chr3_1 exon 85786706 85786735 85786706 ID=Msa0383000-mRNA-1:exon:22576;Parent=Msa0383000-mRNA-1
chr3_1 five_prime_UTR 85786706 85786735 85786706 ID=Msa0383000-mRNA-1:five_prime_utr;Parent=Msa0383000-mRNA-1
chr3_1 five_prime_UTR 85785797 85785865 85785797 ID=Msa0383000-mRNA-1:five_prime_utr;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85785530 85785796 85785530 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85784503 85784785 85784503 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85784156 85784289 85784156 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85783737 85783829 85783737 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85783323 85783456 85783323 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85782814 85782966 85782814 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85782689 85782722 85782689 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85782201 85782350 85782201 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85781980 85782114 85781980 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 CDS 85781273 85781335 85781273 ID=Msa0383000-mRNA-1:cds;Parent=Msa0383000-mRNA-1
chr3_1 three_prime_UTR 85780984 85781272 85780984 ID=Msa0383000-mRNA-1:three_prime_utr;Parent=Msa0383000-mRNA-1
Gene Sequence

>Msa0383000

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>Msa0383000

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV*