AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433150 MtrunA17_Chr3g0138431 92.769 484 29 2 1 484 1 478 0.0 916
Msa0433150 MtrunA17_Chr1g0148681 56.223 466 145 8 17 480 9 417 9.30e-173 492
Msa0433150 MtrunA17_Chr2g0332171 46.341 492 228 15 11 480 8 485 4.19e-120 360
Msa0433150 MtrunA17_Chr2g0332181 42.678 478 207 8 3 472 2 420 1.85e-115 346
Msa0433150 MtrunA17_Chr3g0125051 52.632 285 126 4 201 481 225 504 3.08e-97 302
Msa0433150 MtrunA17_Chr3g0125041 51.648 273 127 2 200 470 227 496 4.54e-97 302
Msa0433150 MtrunA17_Chr1g0152871 51.986 277 129 3 205 479 80 354 2.39e-91 282
Msa0433150 MtrunA17_Chr3g0134421 47.018 285 140 3 196 475 64 342 4.10e-81 255
Msa0433150 MtrunA17_Chr3g0134401 44.569 267 145 1 209 475 67 330 7.78e-75 239
Msa0433150 MtrunA17_Chr3g0134411 43.509 285 136 3 203 475 78 349 2.42e-73 236
Msa0433150 MtrunA17_Chr3g0134441 50.388 258 121 3 221 475 69 322 3.69e-72 231
Msa0433150 MtrunA17_Chr3g0134431 46.586 249 107 4 220 466 13 237 1.37e-61 202
Msa0433150 MtrunA17_Chr7g0255771 38.489 278 159 7 200 473 182 451 1.30e-54 189
Msa0433150 MtrunA17_Chr5g0441371 38.909 275 154 7 202 473 150 413 3.48e-53 184
Msa0433150 MtrunA17_Chr5g0406741 38.686 274 157 4 201 473 156 419 9.49e-52 181
Msa0433150 MtrunA17_Chr8g0370671 37.692 260 148 4 216 473 176 423 3.08e-49 174
Msa0433150 MtrunA17_Chr8g0357001 39.189 222 125 4 214 435 484 695 1.64e-43 163
Msa0433150 MtrunA17_Chr3g0102851 29.730 259 156 8 185 434 2 243 9.25e-26 106
Msa0433150 MtrunA17_Chr3g0103471 30.672 238 148 7 202 434 8 233 6.37e-25 104
Msa0433150 MtrunA17_Chr3g0102621 30.396 227 141 6 213 434 25 239 8.42e-24 100
Msa0433150 MtrunA17_Chr3g0102861 28.968 252 148 8 192 434 4 233 2.17e-23 99.8
Msa0433150 MtrunA17_Chr3g0102631 33.333 177 98 6 267 434 1 166 2.86e-19 86.3
Msa0433150 MtrunA17_Chr3g0102651 33.333 177 98 6 267 434 1 166 2.86e-19 86.3
Msa0433150 MtrunA17_Chr3g0102661 33.333 177 98 6 267 434 1 166 2.86e-19 86.3
Msa0433150 MtrunA17_Chr3g0102671 33.333 177 98 6 267 434 1 166 2.86e-19 86.3
Msa0433150 MtrunA17_Chr5g0418901 41.772 79 46 0 271 349 7 85 3.75e-19 82.4
Msa0433150 MtrunA17_Chr1g0161581 33.516 182 97 6 234 414 362 520 1.76e-16 82.0
Msa0433150 MtrunA17_Chr6g0462911 27.336 289 170 14 208 484 38 298 2.71e-14 73.9
Msa0433150 MtrunA17_Chr5g0398791 26.923 156 98 2 242 391 27 172 1.39e-13 68.9
Msa0433150 MtrunA17_Chr6g0462981 27.778 288 172 12 208 484 38 300 4.72e-13 70.1
Msa0433150 MtrunA17_Chr3g0133211 30.147 136 82 4 228 354 74 205 2.78e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433150 AT5G25380.4 49.585 482 173 12 10 480 19 441 8.94e-138 404
Msa0433150 AT5G11300.1 49.471 473 174 11 13 480 22 434 4.96e-137 402
Msa0433150 AT5G25380.3 48.649 481 173 10 10 480 19 435 2.95e-136 400
Msa0433150 AT5G25380.1 48.649 481 173 10 10 480 19 435 2.95e-136 400
Msa0433150 AT5G25380.2 48.491 464 166 9 10 464 19 418 7.28e-132 388
Msa0433150 AT1G80370.1 45.657 449 197 7 31 472 42 450 3.85e-121 362
Msa0433150 AT1G15570.1 47.196 428 188 9 62 480 52 450 2.11e-119 357
Msa0433150 AT5G11300.2 47.101 414 155 10 13 422 22 375 7.37e-109 329
Msa0433150 AT1G44110.1 53.455 275 125 1 196 470 174 445 2.66e-103 317
Msa0433150 AT5G43080.2 50.730 274 127 1 202 475 73 338 2.80e-93 287
Msa0433150 AT5G43080.1 50.365 274 133 1 202 475 73 343 5.67e-93 286
Msa0433150 AT1G47210.2 47.157 299 151 3 179 475 67 360 2.47e-90 280
Msa0433150 AT1G77390.1 50.877 285 131 4 200 480 162 441 8.78e-90 281
Msa0433150 AT1G47220.1 49.632 272 132 2 202 471 42 310 7.76e-84 262
Msa0433150 AT1G47230.1 46.931 277 142 2 201 475 80 353 1.43e-83 263
Msa0433150 AT1G47230.2 46.763 278 142 3 201 475 80 354 1.03e-81 258
Msa0433150 AT5G06150.1 38.144 291 166 6 193 482 158 435 4.12e-54 188
Msa0433150 AT1G20610.1 36.957 276 159 5 201 473 161 424 2.60e-49 175
Msa0433150 AT2G26760.1 39.544 263 145 7 201 460 114 365 3.15e-49 173
Msa0433150 AT1G76310.1 37.993 279 157 6 199 473 159 425 7.25e-49 174
Msa0433150 AT3G11520.1 38.321 274 157 5 201 473 143 405 9.93e-48 170
Msa0433150 AT3G11520.2 41.322 242 130 5 201 441 143 373 1.72e-46 166
Msa0433150 AT1G76310.2 40.833 240 126 6 199 434 159 386 6.07e-46 164
Msa0433150 AT4G37490.1 34.875 281 165 8 200 473 148 417 7.32e-45 163
Msa0433150 AT1G16330.1 36.434 258 154 3 216 473 395 642 1.15e-43 163
Msa0433150 AT1G76310.3 34.528 307 157 7 199 473 159 453 3.97e-43 159
Msa0433150 AT2G17620.1 38.828 273 152 5 201 470 155 415 1.85e-42 156
Msa0433150 AT4G35620.1 37.500 272 155 5 201 469 156 415 1.30e-41 154
Msa0433150 AT4G35620.2 40.084 237 127 5 201 434 156 380 7.23e-40 148
Msa0433150 AT5G06150.2 41.718 163 92 3 193 354 158 318 1.87e-35 135
Msa0433150 AT1G76310.4 41.341 179 95 5 199 368 159 336 2.45e-33 129
Msa0433150 AT1G47210.1 49.219 128 61 2 179 304 67 192 3.46e-32 122
Msa0433150 AT1G20590.1 39.506 162 85 3 275 434 63 213 3.31e-28 113
Msa0433150 AT1G34460.6 33.742 163 85 4 193 354 248 388 2.85e-20 94.0
Msa0433150 AT1G34460.3 33.742 163 85 4 193 354 248 388 2.85e-20 94.0
Msa0433150 AT1G34460.8 33.742 163 85 4 193 354 248 388 2.85e-20 94.0
Msa0433150 AT1G34460.1 33.742 163 85 4 193 354 248 388 2.85e-20 94.0
Msa0433150 AT1G34460.9 33.742 163 85 4 193 354 234 374 2.88e-20 94.0
Msa0433150 AT1G34460.7 33.742 163 85 4 193 354 248 388 3.10e-20 94.0
Msa0433150 AT1G34460.2 33.742 163 85 4 193 354 245 385 3.14e-20 94.0
Msa0433150 AT1G34460.4 33.742 163 85 4 193 354 245 385 3.14e-20 94.0
Msa0433150 AT1G34460.5 33.742 163 85 4 193 354 248 388 3.72e-20 93.6
Msa0433150 AT1G14750.1 34.337 166 96 4 247 408 384 540 4.38e-14 75.1
Msa0433150 AT1G14750.3 34.337 166 96 4 247 408 384 540 5.90e-14 74.7
Msa0433150 AT1G14750.4 34.337 166 95 4 247 408 216 371 6.26e-14 73.9
Msa0433150 AT1G14750.2 34.337 166 96 4 247 408 216 372 9.17e-14 73.6

Find 108 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 3_2:+85506315 Msa0433150:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 3_2:+85504801 Msa0433150:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 3_2:-85504998 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 3_2:-85506350 None:intergenic
CAAAGCCATGTAGCTGCTTT+TGG 0.238844 3_2:+85509524 Msa0433150:three_prime_UTR
TGTAAATTTATGCATTTCTA+AGG 0.255446 3_2:+85509260 Msa0433150:exon
AACAGTGACTGCACCGGTTT+TGG 0.269524 3_2:-85509226 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 3_2:-85506728 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 3_2:-85507708 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 3_2:-85504770 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 3_2:-85506026 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 3_2:+85508192 Msa0433150:CDS
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 3_2:+85509231 Msa0433150:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 3_2:+85508183 Msa0433150:CDS
ATTTGCGTTTGAATTAGAAT+TGG 0.346535 3_2:+85504683 Msa0433150:five_prime_UTR
TTCTCCATGTAATTGGTTGA+TGG 0.359361 3_2:-85506721 None:intergenic
TAAACTTTATCTTGTTATAC+AGG 0.362296 3_2:+85508165 Msa0433150:CDS
CACCATTGCTGCAGTAACTT+TGG 0.388234 3_2:+85505887 Msa0433150:CDS
CTACGTAACTAATGAGTAAA+GGG 0.406984 3_2:-85509350 None:intergenic
TGCAAGTAACACCAAGCAAC+TGG 0.415916 3_2:-85507180 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 3_2:-85504800 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 3_2:-85506020 None:intergenic
ATGGCTTTGTTGAATTATAA+CGG 0.426708 3_2:-85509510 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 3_2:-85508471 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 3_2:-85507106 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 3_2:+85504852 Msa0433150:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 3_2:-85508302 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 3_2:+85506770 Msa0433150:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 3_2:+85508413 Msa0433150:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 3_2:+85509213 Msa0433150:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 3_2:-85508445 None:intergenic
AACATGGTCACTTATGTTGT+TGG 0.450701 3_2:-85505937 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 3_2:-85506289 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 3_2:-85508312 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 3_2:-85509249 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 3_2:+85508287 Msa0433150:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 3_2:+85507702 Msa0433150:CDS
ATCAGAATTCCACGCATGCT+TGG 0.476428 3_2:-85506763 None:intergenic
TTTGCGTTTGAATTAGAATT+GGG 0.476481 3_2:+85504684 Msa0433150:five_prime_UTR
AGTTGTATCAACATGTTACA+TGG 0.477451 3_2:-85509434 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 3_2:+85504788 Msa0433150:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 3_2:-85505802 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 3_2:-85507120 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 3_2:+85509187 Msa0433150:intron
ACTACGTAACTAATGAGTAA+AGG 0.496801 3_2:-85509351 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 3_2:+85504914 Msa0433150:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 3_2:+85508467 Msa0433150:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 3_2:+85504919 Msa0433150:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 3_2:+85507081 Msa0433150:intron
GAACTTTGTTGTATATATCA+GGG 0.514973 3_2:-85506349 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 3_2:+85506777 Msa0433150:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 3_2:+85506250 Msa0433150:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 3_2:+85505806 Msa0433150:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 3_2:-85508508 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 3_2:+85507122 Msa0433150:CDS
ATAATAACGAAGAAGAAATA+CGG 0.531266 3_2:+85504541 Msa0433150:five_prime_UTR
TATATTTCTCACGTATAGCA+TGG 0.531941 3_2:-85508524 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 3_2:-85508311 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 3_2:+85508314 Msa0433150:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 3_2:+85507169 Msa0433150:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 3_2:+85505851 Msa0433150:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 3_2:-85508268 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 3_2:-85505918 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 3_2:+85504826 Msa0433150:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 3_2:-85506015 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 3_2:-85505889 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 3_2:+85506717 Msa0433150:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 3_2:+85506262 Msa0433150:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 3_2:+85507155 Msa0433150:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 3_2:+85505821 Msa0433150:CDS
GCTCTGCTAAATAATTTGCC+AGG 0.570353 3_2:-85508210 None:intergenic
TAATTCCAAAAGCAGCTACA+TGG 0.573264 3_2:-85509529 None:intergenic
CTAAGGACTCGATCATGACT+CGG 0.574320 3_2:+85509277 Msa0433150:three_prime_UTR
AACTTTGTTGTATATATCAG+GGG 0.581055 3_2:-85506348 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 3_2:-85504973 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 3_2:+85508536 Msa0433150:CDS
CGGAATTTCCTGTACAATGA+GGG 0.593704 3_2:+85509297 Msa0433150:three_prime_UTR
GCCTGGAACAGTGACTGCAC+CGG 0.595943 3_2:-85509232 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 3_2:+85504827 Msa0433150:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 3_2:+85508492 Msa0433150:CDS
TTTCTAAAAGTCAAGATTTG+GGG 0.601914 3_2:+85504489 Msa0433150:five_prime_UTR
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 3_2:+85508258 Msa0433150:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 3_2:+85506780 Msa0433150:CDS
TACAAAGGTCAGGCGATCCG+AGG 0.611523 3_2:-85506279 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 3_2:+85507625 Msa0433150:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 3_2:-85508297 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 3_2:+85504795 Msa0433150:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 3_2:-85507132 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 3_2:-85508190 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 3_2:-85507676 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 3_2:+85504789 Msa0433150:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 3_2:+85505981 Msa0433150:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 3_2:-85507593 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 3_2:+85508315 Msa0433150:CDS
TCGGAATTTCCTGTACAATG+AGG 0.638297 3_2:+85509296 Msa0433150:three_prime_UTR
ACATTCTTGCATTGAAAGTG+TGG 0.640397 3_2:-85505970 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 3_2:+85504915 Msa0433150:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 3_2:+85506254 Msa0433150:CDS
AACAGTGAGTTGAAGTACTG+AGG 0.651840 3_2:+85509459 Msa0433150:three_prime_UTR
GATATTTCTCCAAGCATGCG+TGG 0.654313 3_2:+85506754 Msa0433150:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 3_2:-85504787 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 3_2:+85506014 Msa0433150:CDS
ATACCCATGGATGTTCTGAG+TGG 0.668616 3_2:-85508318 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 3_2:+85507580 Msa0433150:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 3_2:+85509192 Msa0433150:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 3_2:-85505953 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 3_2:+85504920 Msa0433150:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 3_2:+85506361 Msa0433150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTAAAACATGAATT+TGG - chr3_2:85505033-85505052 None:intergenic 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG - chr3_2:85505427-85505446 None:intergenic 10.0%
!! ATAATATAAAAAAAGTTACT+AGG + chr3_2:85506137-85506156 Msa0433150:intron 10.0%
!! ATTAATACTACTAATTATAA+TGG - chr3_2:85508741-85508760 None:intergenic 10.0%
!!! AATTGGTACATTTTATTTTA+TGG - chr3_2:85505321-85505340 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG - chr3_2:85505428-85505447 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG - chr3_2:85506132-85506151 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG - chr3_2:85506133-85506152 None:intergenic 15.0%
!! GATTGTTTAATAATGAATTA+CGG - chr3_2:85506392-85506411 None:intergenic 15.0%
!! TATTTATATCTTCTAAACAA+AGG - chr3_2:85508368-85508387 None:intergenic 15.0%
!!! ATTTTCTAAAAGTCAAGATT+TGG + chr3_2:85504487-85504506 Msa0433150:five_prime_UTR 20.0%
!!! TTTTCTAAAAGTCAAGATTT+GGG + chr3_2:85504488-85504507 Msa0433150:five_prime_UTR 20.0%
!! ATAATAACGAAGAAGAAATA+CGG + chr3_2:85504541-85504560 Msa0433150:five_prime_UTR 20.0%
!! ATCAATATCACCATATAATT+AGG + chr3_2:85505052-85505071 Msa0433150:intron 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG - chr3_2:85505085-85505104 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG + chr3_2:85505098-85505117 Msa0433150:intron 20.0%
!! TATGATAGAATAGAACATTA+TGG + chr3_2:85505135-85505154 Msa0433150:intron 20.0%
!! TATTGAAATAAACCTTTGTT+TGG - chr3_2:85506029-85506048 None:intergenic 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG + chr3_2:85506066-85506085 Msa0433150:intron 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG - chr3_2:85506629-85506648 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG + chr3_2:85506672-85506691 Msa0433150:intron 20.0%
!!! GTAAGTACTATTTTTTGTAA+TGG + chr3_2:85507216-85507235 Msa0433150:intron 20.0%
!!! AATTTAACTTAGTATGTGTT+TGG + chr3_2:85507876-85507895 Msa0433150:intron 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG + chr3_2:85508165-85508184 Msa0433150:CDS 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG - chr3_2:85509137-85509156 None:intergenic 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG + chr3_2:85509135-85509154 Msa0433150:intron 20.0%
!! TGTAAATTTATGCATTTCTA+AGG + chr3_2:85509260-85509279 Msa0433150:exon 20.0%
!! TTTCTAAAAGTCAAGATTTG+GGG + chr3_2:85504489-85504508 Msa0433150:five_prime_UTR 25.0%
!!! TAATAGTAGCATTGTTTTGT+TGG + chr3_2:85504590-85504609 Msa0433150:five_prime_UTR 25.0%
!!! TAATGTCTTGTTTGAAAAAC+AGG + chr3_2:85504648-85504667 Msa0433150:five_prime_UTR 25.0%
! ATTTGCGTTTGAATTAGAAT+TGG + chr3_2:85504683-85504702 Msa0433150:five_prime_UTR 25.0%
! TTTGCGTTTGAATTAGAATT+GGG + chr3_2:85504684-85504703 Msa0433150:five_prime_UTR 25.0%
!! TGTTAAACAATCCAATTTTC+AGG + chr3_2:85504987-85505006 Msa0433150:CDS 25.0%
!! ATGAATTTGGTGACAAAATT+GGG - chr3_2:85505020-85505039 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG + chr3_2:85505110-85505129 Msa0433150:intron 25.0%
! ACTATCATTTCCTAATGATA+TGG - chr3_2:85505221-85505240 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG + chr3_2:85505326-85505345 Msa0433150:intron 25.0%
! AAATTGTAGAATCTCATCTT+AGG + chr3_2:85505505-85505524 Msa0433150:intron 25.0%
! CTGTAAAATGGATAACTAAT+CGG - chr3_2:85505733-85505752 None:intergenic 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG - chr3_2:85505770-85505789 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG + chr3_2:85506250-85506269 Msa0433150:CDS 25.0%
! AGACATCGATAAAAAGTTAA+AGG + chr3_2:85506301-85506320 Msa0433150:CDS 25.0%
! AGTTAAAGGATTCTCAAATT+TGG + chr3_2:85506315-85506334 Msa0433150:CDS 25.0%
!! AACTTTGTTGTATATATCAG+GGG - chr3_2:85506351-85506370 None:intergenic 25.0%
!! GAACTTTGTTGTATATATCA+GGG - chr3_2:85506352-85506371 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG - chr3_2:85506619-85506638 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG - chr3_2:85506873-85506892 None:intergenic 25.0%
! TAGATGAGAATTCTTTGATA+AGG - chr3_2:85506879-85506898 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG - chr3_2:85506905-85506924 None:intergenic 25.0%
! CAAAAACATAGTTGAATGAT+AGG + chr3_2:85506911-85506930 Msa0433150:intron 25.0%
! ATAGGATATATACAATGTGA+TGG + chr3_2:85506929-85506948 Msa0433150:intron 25.0%
! ACTTCAACAAACTGTAATTA+AGG - chr3_2:85507009-85507028 None:intergenic 25.0%
!! TCTTTTTGAACTATGAACTA+AGG + chr3_2:85507294-85507313 Msa0433150:intron 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG - chr3_2:85507403-85507422 None:intergenic 25.0%
! TAATACATACACAAAAGAAG+AGG + chr3_2:85507625-85507644 Msa0433150:CDS 25.0%
! AAAAGAAGAGGTAGTAAAAA+TGG + chr3_2:85507637-85507656 Msa0433150:CDS 25.0%
! TTGATCTATTATTGTCTTTC+AGG + chr3_2:85507793-85507812 Msa0433150:intron 25.0%
! CTAAGTTAAATTGTAGATAG+TGG - chr3_2:85507868-85507887 None:intergenic 25.0%
! TGAGAAATATAAACATGAGA+AGG + chr3_2:85508536-85508555 Msa0433150:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG - chr3_2:85508646-85508665 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG + chr3_2:85508839-85508858 Msa0433150:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG - chr3_2:85508843-85508862 None:intergenic 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG - chr3_2:85509132-85509151 None:intergenic 25.0%
!! AAGTAGAATACTTCATTTTG+AGG + chr3_2:85509484-85509503 Msa0433150:three_prime_UTR 25.0%
!!! ATGGCTTTGTTGAATTATAA+CGG - chr3_2:85509513-85509532 None:intergenic 25.0%
TGTTTAACACGTTTATCATG+TGG - chr3_2:85504976-85504995 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG - chr3_2:85505001-85505020 None:intergenic 30.0%
! CATGAATTTGGTGACAAAAT+TGG - chr3_2:85505021-85505040 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG - chr3_2:85505065-85505084 None:intergenic 30.0%
!!! AAGCTTTTTTCAACTAAGTG+GGG - chr3_2:85505184-85505203 None:intergenic 30.0%
!!! CAAGCTTTTTTCAACTAAGT+GGG - chr3_2:85505185-85505204 None:intergenic 30.0%
GTTGTTATCACCATATCATT+AGG + chr3_2:85505208-85505227 Msa0433150:intron 30.0%
GATTGATCTATCTAGGTAAT+TGG + chr3_2:85505268-85505287 Msa0433150:intron 30.0%
AATAGATTTGCCTTCAAAGT+TGG + chr3_2:85505363-85505382 Msa0433150:intron 30.0%
ATAGATTTGCCTTCAAAGTT+GGG + chr3_2:85505364-85505383 Msa0433150:intron 30.0%
AAGATTGTCCAATAGTTAAG+AGG + chr3_2:85505582-85505601 Msa0433150:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG + chr3_2:85505731-85505750 Msa0433150:intron 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG - chr3_2:85505757-85505776 None:intergenic 30.0%
AGAATTGTCTACCATAAAGA+TGG + chr3_2:85505851-85505870 Msa0433150:CDS 30.0%
!! TTTTGACTCTACCATCTTTA+TGG - chr3_2:85505865-85505884 None:intergenic 30.0%
! AATAAACCTTTGTTTGGACT+TGG - chr3_2:85506023-85506042 None:intergenic 30.0%
TGACATTGCAATTTAGCATA+TGG - chr3_2:85506101-85506120 None:intergenic 30.0%
GGTGAAATATCTTAGAAGTT+TGG + chr3_2:85506184-85506203 Msa0433150:intron 30.0%
AGACAACATGACAGTAATTA+TGG - chr3_2:85506213-85506232 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG + chr3_2:85506254-85506273 Msa0433150:CDS 30.0%
! CTTTTTATCGATGTCTACAA+AGG - chr3_2:85506297-85506316 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG - chr3_2:85506353-85506372 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG + chr3_2:85506519-85506538 Msa0433150:intron 30.0%
AAGAATAGAGCAGAATCATT+AGG + chr3_2:85506640-85506659 Msa0433150:intron 30.0%
TGATAAGGTTATGGACAAAA+AGG - chr3_2:85506864-85506883 None:intergenic 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG - chr3_2:85506902-85506921 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG + chr3_2:85506957-85506976 Msa0433150:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG + chr3_2:85506978-85506997 Msa0433150:intron 30.0%
!!! ACTATTTTTTGTAATGGTCC+TGG + chr3_2:85507222-85507241 Msa0433150:intron 30.0%
ACTATGAACTAAGGATATCT+AGG + chr3_2:85507303-85507322 Msa0433150:intron 30.0%
TCATTTAATCCGAATGCATT+TGG + chr3_2:85507449-85507468 Msa0433150:intron 30.0%
TAACTATCACCAAATGCATT+CGG - chr3_2:85507461-85507480 None:intergenic 30.0%
!!! CGTTTTTTCCCAATATCATT+CGG + chr3_2:85507514-85507533 Msa0433150:intron 30.0%
ATCTTAGACCGAATGATATT+GGG - chr3_2:85507525-85507544 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG - chr3_2:85507711-85507730 None:intergenic 30.0%
!! ATGGATTTTGACATGTTTGA+TGG + chr3_2:85507939-85507958 Msa0433150:intron 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG - chr3_2:85508017-85508036 None:intergenic 30.0%
TATATTTCTCACGTATAGCA+TGG - chr3_2:85508527-85508546 None:intergenic 30.0%
AACATTGGTCAACTGAAAAA+AGG - chr3_2:85508582-85508601 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG - chr3_2:85508597-85508616 None:intergenic 30.0%
TTGAAAGATGACTTACATTC+AGG + chr3_2:85508802-85508821 Msa0433150:intron 30.0%
TGAAAGATGACTTACATTCA+GGG + chr3_2:85508803-85508822 Msa0433150:intron 30.0%
TAGGAACAGAGATAGTATAT+AGG + chr3_2:85508858-85508877 Msa0433150:intron 30.0%
CACTCAATAATTGAGAATGT+TGG - chr3_2:85508914-85508933 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG - chr3_2:85509068-85509087 None:intergenic 30.0%
CTACGTAACTAATGAGTAAA+GGG - chr3_2:85509353-85509372 None:intergenic 30.0%
ACTACGTAACTAATGAGTAA+AGG - chr3_2:85509354-85509373 None:intergenic 30.0%
AGTTGTATCAACATGTTACA+TGG - chr3_2:85509437-85509456 None:intergenic 30.0%
ACTCAGAATTACCAGATCAA+GGG + chr3_2:85504789-85504808 Msa0433150:CDS 35.0%
! CTCAGAAGAAACAACCTTTT+TGG - chr3_2:85504869-85504888 None:intergenic 35.0%
ATTATGGCGTAATTTGATCC+TGG + chr3_2:85505151-85505170 Msa0433150:intron 35.0%
!!! TTTTTTCAACTAAGTGGGGT+CGG - chr3_2:85505180-85505199 None:intergenic 35.0%
!!! CCAAGCTTTTTTCAACTAAG+TGG - chr3_2:85505186-85505205 None:intergenic 35.0%
CCACTTAGTTGAAAAAAGCT+TGG + chr3_2:85505183-85505202 Msa0433150:intron 35.0%
ACATGCAGATTGATCTATCT+AGG + chr3_2:85505261-85505280 Msa0433150:intron 35.0%
ACTTACATACCCAACTTTGA+AGG - chr3_2:85505376-85505395 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG + chr3_2:85505508-85505527 Msa0433150:intron 35.0%
CTAACCTACTCTCTTTACTA+GGG - chr3_2:85505558-85505577 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG - chr3_2:85505559-85505578 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG - chr3_2:85505593-85505612 None:intergenic 35.0%
! TTATCCATTTTACAGGCCAA+AGG + chr3_2:85505738-85505757 Msa0433150:intron 35.0%
! TTGTGCTGATGAAACTTCAA+TGG - chr3_2:85505805-85505824 None:intergenic 35.0%
ACAAGAGGATGTTAAAGAGA+AGG + chr3_2:85505821-85505840 Msa0433150:CDS 35.0%
TTGGACATACAATGTTCAGT+TGG - chr3_2:85505921-85505940 None:intergenic 35.0%
AACATGGTCACTTATGTTGT+TGG - chr3_2:85505940-85505959 None:intergenic 35.0%
ACATTCTTGCATTGAAAGTG+TGG - chr3_2:85505973-85505992 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG + chr3_2:85506114-85506133 Msa0433150:intron 35.0%
AATGAATTACGGACAAACCT+CGG - chr3_2:85506381-85506400 None:intergenic 35.0%
TGCAAAATGAAATATGCTCC+TGG - chr3_2:85506549-85506568 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG + chr3_2:85506717-85506736 Msa0433150:CDS 35.0%
TTCTCCATGTAATTGGTTGA+TGG - chr3_2:85506724-85506743 None:intergenic 35.0%
!! AATTCTGATTGATTGGCTTG+TGG + chr3_2:85506777-85506796 Msa0433150:CDS 35.0%
! TTACCATCAAGCTTTTGTTG+TGG + chr3_2:85507029-85507048 Msa0433150:intron 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG + chr3_2:85507041-85507060 Msa0433150:intron 35.0%
TCAGAAACCTGAAAAGGAAT+AGG - chr3_2:85507070-85507089 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG + chr3_2:85507069-85507088 Msa0433150:intron 35.0%
TATTCCTCAGAAACCTGAAA+AGG - chr3_2:85507076-85507095 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG + chr3_2:85507122-85507141 Msa0433150:CDS 35.0%
CAAGTTTGATTCAGAAACAC+AGG + chr3_2:85507155-85507174 Msa0433150:CDS 35.0%
AGAATTCTAACTCTGAGCAA+CGG - chr3_2:85507261-85507280 None:intergenic 35.0%
CATCTTAGACCGAATGATAT+TGG - chr3_2:85507526-85507545 None:intergenic 35.0%
! AGATGCACTTCTTTTCTTCA+TGG + chr3_2:85507541-85507560 Msa0433150:intron 35.0%
AGAGGTAGTAAAAATGGAGA+AGG + chr3_2:85507643-85507662 Msa0433150:CDS 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG - chr3_2:85507704-85507723 None:intergenic 35.0%
! TTAGTATGTGTTTGGTTTCG+TGG + chr3_2:85507884-85507903 Msa0433150:intron 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG - chr3_2:85507919-85507938 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG + chr3_2:85507920-85507939 Msa0433150:intron 35.0%
TTGGTTAGAATCACTTCTTG+AGG - chr3_2:85507998-85508017 None:intergenic 35.0%
AGTGATTCTAACCAAAAGCT+AGG + chr3_2:85508003-85508022 Msa0433150:intron 35.0%
!! CTGGATTATTTTATGCTGAC+AGG + chr3_2:85508122-85508141 Msa0433150:intron 35.0%
TAGTCAACATTTCATACCCA+TGG - chr3_2:85508334-85508353 None:intergenic 35.0%
ATATATGCAGACTACAACTC+TGG + chr3_2:85508413-85508432 Msa0433150:intron 35.0%
GATCTGCAACTTAATACCAA+AGG + chr3_2:85508492-85508511 Msa0433150:CDS 35.0%
! TCTAAAGGGTACAATACAAC+TGG - chr3_2:85509054-85509073 None:intergenic 35.0%
AGTTGTATTGTACCCTTTAG+AGG + chr3_2:85509053-85509072 Msa0433150:intron 35.0%
GCAAAAGATGTTTCCTCTAA+AGG - chr3_2:85509069-85509088 None:intergenic 35.0%
! ACATCTTTTGCATCTGATTG+AGG + chr3_2:85509078-85509097 Msa0433150:intron 35.0%
TCTGATTGAGGTTCATAAAC+CGG + chr3_2:85509090-85509109 Msa0433150:intron 35.0%
!! AGGACAGCATATTATTTTGC+CGG - chr3_2:85509112-85509131 None:intergenic 35.0%
CATAAATTTACACTTGAGCC+TGG - chr3_2:85509252-85509271 None:intergenic 35.0%
TAAAAACACCCTCATTGTAC+AGG - chr3_2:85509308-85509327 None:intergenic 35.0%
TAATTCCAAAAGCAGCTACA+TGG - chr3_2:85509532-85509551 None:intergenic 35.0%
GCTCTTCTTCTTCTTCTTCA+AGG + chr3_2:85504709-85504728 Msa0433150:five_prime_UTR 40.0%
CTTGATCTGGTAATTCTGAG+TGG - chr3_2:85504790-85504809 None:intergenic 40.0%
CACTCAGAATTACCAGATCA+AGG + chr3_2:85504788-85504807 Msa0433150:CDS 40.0%
AATTACCAGATCAAGGGCAA+AGG + chr3_2:85504795-85504814 Msa0433150:CDS 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG + chr3_2:85504802-85504821 Msa0433150:CDS 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG - chr3_2:85504832-85504851 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG - chr3_2:85504833-85504852 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG + chr3_2:85504852-85504871 Msa0433150:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG + chr3_2:85504914-85504933 Msa0433150:CDS 40.0%
TGTTCCTCACCGTAAAAGAA+GGG + chr3_2:85504915-85504934 Msa0433150:CDS 40.0%
TTTGCTCGACCAAGTTCAAT+TGG - chr3_2:85505338-85505357 None:intergenic 40.0%
AAGTCAGCTGAAATTGCTAG+AGG + chr3_2:85505392-85505411 Msa0433150:intron 40.0%
AGTCAGCTGAAATTGCTAGA+GGG + chr3_2:85505393-85505412 Msa0433150:intron 40.0%
AACTCCTTTGGCCTGTAAAA+TGG - chr3_2:85505745-85505764 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG + chr3_2:85505806-85505825 Msa0433150:CDS 40.0%
AACCAAAGTTACTGCAGCAA+TGG - chr3_2:85505892-85505911 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG + chr3_2:85505981-85506000 Msa0433150:CDS 40.0%
AAGCCACTAACTCACTAGAA+AGG + chr3_2:85506163-85506182 Msa0433150:intron 40.0%
! TCACCTTTCTAGTGAGTTAG+TGG - chr3_2:85506169-85506188 None:intergenic 40.0%
TATCGATGTCTACAAAGGTC+AGG - chr3_2:85506292-85506311 None:intergenic 40.0%
CTGCAACTTCTCCATGTAAT+TGG - chr3_2:85506731-85506750 None:intergenic 40.0%
TGCGTGGAATTCTGATTGAT+TGG + chr3_2:85506770-85506789 Msa0433150:CDS 40.0%
AAGCCACAACAAAAGCTTGA+TGG - chr3_2:85507035-85507054 None:intergenic 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG + chr3_2:85507060-85507079 Msa0433150:intron 40.0%
! GGTTTCTGAGGAATATAAGC+TGG + chr3_2:85507081-85507100 Msa0433150:intron 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG - chr3_2:85507109-85507128 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG - chr3_2:85507123-85507142 None:intergenic 40.0%
TTGAGAGAAACCGATCAATG+AGG - chr3_2:85507135-85507154 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG - chr3_2:85507243-85507262 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG - chr3_2:85507260-85507279 None:intergenic 40.0%
ACAGTAAACTGAGGATCGAA+AGG - chr3_2:85507362-85507381 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG + chr3_2:85507361-85507380 Msa0433150:intron 40.0%
ATCATCTCCACAGTAAACTG+AGG - chr3_2:85507371-85507390 None:intergenic 40.0%
AAGCAAAATTCTTCCACTCG+AGG - chr3_2:85507596-85507615 None:intergenic 40.0%
CAGATAACTGAAAACGCAGA+AGG - chr3_2:85507679-85507698 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG - chr3_2:85507705-85507724 None:intergenic 40.0%
CCACAACCAAAACATTTCTC+AGG + chr3_2:85507702-85507721 Msa0433150:CDS 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG - chr3_2:85507827-85507846 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG + chr3_2:85507827-85507846 Msa0433150:intron 40.0%
GTGGTAGAGATAACCAAAAG+TGG + chr3_2:85507903-85507922 Msa0433150:intron 40.0%
CATTGCAAAATCAAACACGC+TGG + chr3_2:85508103-85508122 Msa0433150:intron 40.0%
! GCTCTGCTAAATAATTTGCC+AGG - chr3_2:85508213-85508232 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG - chr3_2:85508448-85508467 None:intergenic 40.0%
AAAACCAGTTGTTCTTGCAC+TGG + chr3_2:85508467-85508486 Msa0433150:CDS 40.0%
! AGCATTTTCAGTGTGACTAG+TGG - chr3_2:85508611-85508630 None:intergenic 40.0%
CACTGAAAATGCTACTCCAT+CGG + chr3_2:85508618-85508637 Msa0433150:intron 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG - chr3_2:85508637-85508656 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG - chr3_2:85509034-85509053 None:intergenic 40.0%
TGCTTCATGTGACAGTTCAA+TGG + chr3_2:85509187-85509206 Msa0433150:intron 40.0%
TCGGAATTTCCTGTACAATG+AGG + chr3_2:85509296-85509315 Msa0433150:three_prime_UTR 40.0%
CGGAATTTCCTGTACAATGA+GGG + chr3_2:85509297-85509316 Msa0433150:three_prime_UTR 40.0%
!! AACAGTGAGTTGAAGTACTG+AGG + chr3_2:85509459-85509478 Msa0433150:three_prime_UTR 40.0%
CAAAACCTTTGCCCTTGATC+TGG - chr3_2:85504803-85504822 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG + chr3_2:85504801-85504820 Msa0433150:CDS 45.0%
GACCCTCTTCGGAAAATGAA+GGG + chr3_2:85504827-85504846 Msa0433150:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG - chr3_2:85504913-85504932 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG - chr3_2:85504927-85504946 None:intergenic 45.0%
GTCAGCTGAAATTGCTAGAG+GGG + chr3_2:85505394-85505413 Msa0433150:intron 45.0%
TTAGGTGGTAGAGACATGTG+TGG + chr3_2:85505523-85505542 Msa0433150:intron 45.0%
GAGACCCTAGTAAAGAGAGT+AGG + chr3_2:85505551-85505570 Msa0433150:intron 45.0%
CACCATTGCTGCAGTAACTT+TGG + chr3_2:85505887-85505906 Msa0433150:CDS 45.0%
GTGTGGTGTCTGTCATAACA+TGG - chr3_2:85505956-85505975 None:intergenic 45.0%
ACCTCTCCAAGTCCAAACAA+AGG + chr3_2:85506014-85506033 Msa0433150:CDS 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG - chr3_2:85506018-85506037 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG + chr3_2:85506528-85506547 Msa0433150:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG + chr3_2:85506754-85506773 Msa0433150:CDS 45.0%
ATCAGAATTCCACGCATGCT+TGG - chr3_2:85506766-85506785 None:intergenic 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG + chr3_2:85506780-85506799 Msa0433150:CDS 45.0%
TGCAAGTAACACCAAGCAAC+TGG - chr3_2:85507183-85507202 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG - chr3_2:85508193-85508212 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG + chr3_2:85508192-85508211 Msa0433150:CDS 45.0%
ACAGTTTCTACCTTCTCGTG+TGG + chr3_2:85508258-85508277 Msa0433150:CDS 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG - chr3_2:85508314-85508333 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG - chr3_2:85508315-85508334 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG + chr3_2:85508314-85508333 Msa0433150:CDS 45.0%
CAACCACTCAGAACATCCAT+GGG + chr3_2:85508315-85508334 Msa0433150:CDS 45.0%
! ATACCCATGGATGTTCTGAG+TGG - chr3_2:85508321-85508340 None:intergenic 45.0%
TCTTCCAGTGCAAGAACAAC+TGG - chr3_2:85508474-85508493 None:intergenic 45.0%
AGCATGGAGAGAACAACCTT+TGG - chr3_2:85508511-85508530 None:intergenic 45.0%
CATGTGACAGTTCAATGGTG+TGG + chr3_2:85509192-85509211 Msa0433150:intron 45.0%
GGCAAAACTGTCTCCAAAAC+CGG + chr3_2:85509213-85509232 Msa0433150:CDS 45.0%
CTAAGGACTCGATCATGACT+CGG + chr3_2:85509277-85509296 Msa0433150:three_prime_UTR 45.0%
!! CAAAGCCATGTAGCTGCTTT+TGG + chr3_2:85509524-85509543 Msa0433150:three_prime_UTR 45.0%
!! TATTATTATTACTTTATAAT+AGG + chr3_2:85506471-85506490 Msa0433150:intron 5.0%
!! ATTATTATTACTTTATAATA+GGG + chr3_2:85506472-85506491 Msa0433150:intron 5.0%
GAGTGGACGCTCTTCATCTT+TGG - chr3_2:85504773-85504792 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG + chr3_2:85504805-85504824 Msa0433150:CDS 50.0%
GGACCCTCTTCGGAAAATGA+AGG + chr3_2:85504826-85504845 Msa0433150:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG + chr3_2:85504920-85504939 Msa0433150:CDS 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG + chr3_2:85506262-85506281 Msa0433150:CDS 50.0%
CAACAAAGTTCGAGTCACCG+AGG + chr3_2:85506361-85506380 Msa0433150:CDS 50.0%
AAACACAGGCTCCAGTTGCT+TGG + chr3_2:85507169-85507188 Msa0433150:CDS 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG + chr3_2:85508183-85508202 Msa0433150:CDS 50.0%
CTGCTGTATTCCTTGCCAGA+TGG + chr3_2:85508287-85508306 Msa0433150:CDS 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG - chr3_2:85509229-85509248 None:intergenic 50.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG + chr3_2:85504816-85504835 Msa0433150:CDS 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG - chr3_2:85504922-85504941 None:intergenic 55.0%
CCTCACCGTAAAAGAAGGGC+AGG + chr3_2:85504919-85504938 Msa0433150:CDS 55.0%
TACAAAGGTCAGGCGATCCG+AGG - chr3_2:85506282-85506301 None:intergenic 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG + chr3_2:85506792-85506811 Msa0433150:intron 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG + chr3_2:85506798-85506817 Msa0433150:intron 55.0%
AGAGATGTGTGCTCCTCGAG+TGG + chr3_2:85507580-85507599 Msa0433150:CDS 55.0%
TGAGTGGTTGAGGGTCCATC+TGG - chr3_2:85508305-85508324 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACC+AGG - chr3_2:85505172-85505191 None:intergenic 60.0%
GCAGAAGCAGCCACACGAGA+AGG - chr3_2:85508271-85508290 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG - chr3_2:85508300-85508319 None:intergenic 60.0%
ACCGGTGCAGTCACTGTTCC+AGG + chr3_2:85509231-85509250 Msa0433150:CDS 60.0%
GCCTGGAACAGTGACTGCAC+CGG - chr3_2:85509235-85509254 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85504484 85509553 85504484 ID=Msa0433150;Name=Msa0433150
chr3_2 mRNA 85504484 85509553 85504484 ID=Msa0433150-mRNA-1;Parent=Msa0433150;Name=Msa0433150-mRNA-1;_AED=0.06;_eAED=0.05;_QI=258|0.87|0.88|1|1|1|9|289|484
chr3_2 exon 85504484 85505008 85504484 ID=Msa0433150-mRNA-1:exon:24501;Parent=Msa0433150-mRNA-1
chr3_2 exon 85505753 85506035 85505753 ID=Msa0433150-mRNA-1:exon:24502;Parent=Msa0433150-mRNA-1
chr3_2 exon 85506249 85506382 85506249 ID=Msa0433150-mRNA-1:exon:24503;Parent=Msa0433150-mRNA-1
chr3_2 exon 85506709 85506801 85506709 ID=Msa0433150-mRNA-1:exon:24504;Parent=Msa0433150-mRNA-1
chr3_2 exon 85507082 85507215 85507082 ID=Msa0433150-mRNA-1:exon:24505;Parent=Msa0433150-mRNA-1
chr3_2 exon 85507571 85507723 85507571 ID=Msa0433150-mRNA-1:exon:24506;Parent=Msa0433150-mRNA-1
chr3_2 exon 85508144 85508336 85508144 ID=Msa0433150-mRNA-1:exon:24507;Parent=Msa0433150-mRNA-1
chr3_2 exon 85508423 85508557 85508423 ID=Msa0433150-mRNA-1:exon:24508;Parent=Msa0433150-mRNA-1
chr3_2 exon 85509202 85509553 85509202 ID=Msa0433150-mRNA-1:exon:24509;Parent=Msa0433150-mRNA-1
chr3_2 five_prime_UTR 85504484 85504741 85504484 ID=Msa0433150-mRNA-1:five_prime_utr;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85504742 85505008 85504742 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85505753 85506035 85505753 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85506249 85506382 85506249 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85506709 85506801 85506709 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85507082 85507215 85507082 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85507571 85507723 85507571 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85508144 85508336 85508144 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85508423 85508557 85508423 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 CDS 85509202 85509264 85509202 ID=Msa0433150-mRNA-1:cds;Parent=Msa0433150-mRNA-1
chr3_2 three_prime_UTR 85509265 85509553 85509265 ID=Msa0433150-mRNA-1:three_prime_utr;Parent=Msa0433150-mRNA-1
Gene Sequence

>Msa0433150

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>Msa0433150

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRKNATQCVKLYLVIQVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV*