AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450190 MtrunA17_Chr3g0138431 95.426 481 19 1 1 481 1 478 0.0 947
Msa1450190 MtrunA17_Chr1g0148681 58.099 463 138 7 17 477 9 417 0.0 518
Msa1450190 MtrunA17_Chr2g0332171 48.057 489 221 14 11 477 8 485 1.43e-129 384
Msa1450190 MtrunA17_Chr2g0332181 44.000 475 202 7 3 469 2 420 7.60e-124 368
Msa1450190 MtrunA17_Chr3g0125051 54.643 280 125 2 201 478 225 504 8.48e-104 319
Msa1450190 MtrunA17_Chr3g0125041 53.704 270 123 1 200 467 227 496 2.91e-103 318
Msa1450190 MtrunA17_Chr1g0152871 51.636 275 130 2 205 476 80 354 1.31e-93 288
Msa1450190 MtrunA17_Chr3g0134421 48.029 279 143 1 196 472 64 342 7.06e-86 268
Msa1450190 MtrunA17_Chr3g0134401 46.212 264 142 0 209 472 67 330 6.50e-81 254
Msa1450190 MtrunA17_Chr3g0134411 46.324 272 144 1 203 472 78 349 2.18e-79 251
Msa1450190 MtrunA17_Chr3g0134441 50.787 254 123 1 221 472 69 322 9.90e-75 238
Msa1450190 MtrunA17_Chr3g0134431 47.773 247 104 5 220 463 13 237 3.00e-62 203
Msa1450190 MtrunA17_Chr7g0255771 40.364 275 155 7 200 470 182 451 1.63e-58 200
Msa1450190 MtrunA17_Chr5g0406741 40.959 271 152 4 201 470 156 419 1.20e-57 196
Msa1450190 MtrunA17_Chr5g0441371 40.590 271 152 6 202 470 150 413 2.01e-57 196
Msa1450190 MtrunA17_Chr8g0370671 39.608 255 147 3 216 470 176 423 4.91e-55 190
Msa1450190 MtrunA17_Chr8g0357001 42.466 219 119 3 214 432 484 695 3.54e-49 179
Msa1450190 MtrunA17_Chr3g0102851 30.556 252 160 7 185 431 2 243 1.20e-25 106
Msa1450190 MtrunA17_Chr3g0103471 30.638 235 149 6 202 431 8 233 6.16e-25 104
Msa1450190 MtrunA17_Chr3g0102621 31.250 224 140 6 213 431 25 239 9.74e-25 103
Msa1450190 MtrunA17_Chr3g0102861 30.204 245 151 7 192 431 4 233 5.94e-24 101
Msa1450190 MtrunA17_Chr3g0102631 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa1450190 MtrunA17_Chr3g0102651 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa1450190 MtrunA17_Chr3g0102661 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa1450190 MtrunA17_Chr3g0102671 35.294 170 101 5 267 431 1 166 2.25e-20 89.4
Msa1450190 MtrunA17_Chr5g0418901 41.772 79 46 0 271 349 7 85 2.71e-19 82.8
Msa1450190 MtrunA17_Chr1g0161581 33.520 179 98 5 234 411 362 520 7.33e-18 86.3
Msa1450190 MtrunA17_Chr5g0398791 29.730 148 101 2 242 388 27 172 6.00e-16 75.9
Msa1450190 MtrunA17_Chr6g0462911 27.622 286 170 14 208 481 38 298 1.71e-14 74.3
Msa1450190 MtrunA17_Chr3g0133211 28.571 182 117 4 228 400 74 251 2.16e-14 74.7
Msa1450190 MtrunA17_Chr6g0462981 28.070 285 172 12 208 481 38 300 2.52e-13 70.9
Msa1450190 MtrunA17_Chr4g0041721 26.816 179 124 4 228 400 69 246 1.47e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450190 AT5G25380.4 51.363 477 169 10 10 477 19 441 6.62e-147 427
Msa1450190 AT5G11300.1 51.489 470 166 10 13 477 22 434 6.94e-147 427
Msa1450190 AT5G25380.3 50.420 476 169 8 10 477 19 435 1.86e-145 424
Msa1450190 AT5G25380.1 50.420 476 169 8 10 477 19 435 1.86e-145 424
Msa1450190 AT5G25380.2 50.327 459 162 7 10 461 19 418 6.54e-141 411
Msa1450190 AT1G80370.1 47.072 444 195 6 31 469 42 450 7.02e-129 382
Msa1450190 AT1G15570.1 48.463 423 187 7 62 477 52 450 4.67e-126 374
Msa1450190 AT5G11300.2 49.392 411 147 9 13 419 22 375 8.94e-119 355
Msa1450190 AT1G44110.1 55.147 272 122 0 196 467 174 445 5.26e-110 334
Msa1450190 AT5G43080.1 52.399 271 129 0 202 472 73 343 7.08e-100 304
Msa1450190 AT5G43080.2 52.768 271 123 1 202 472 73 338 5.90e-99 301
Msa1450190 AT1G47210.2 49.324 296 146 2 179 472 67 360 3.43e-98 300
Msa1450190 AT1G77390.1 52.500 280 131 2 200 477 162 441 1.22e-96 299
Msa1450190 AT1G47220.1 52.416 269 126 1 202 468 42 310 1.50e-92 284
Msa1450190 AT1G47230.1 48.905 274 138 1 201 472 80 353 1.56e-90 280
Msa1450190 AT1G47230.2 48.727 275 138 2 201 472 80 354 1.09e-88 276
Msa1450190 AT5G06150.1 40.278 288 161 6 193 479 158 435 6.68e-59 201
Msa1450190 AT1G20610.1 39.114 271 157 4 201 470 161 424 1.28e-55 191
Msa1450190 AT1G76310.1 40.146 274 155 5 199 470 159 425 3.72e-55 190
Msa1450190 AT3G11520.1 40.959 271 151 5 201 470 143 405 1.77e-53 185
Msa1450190 AT1G76310.2 43.404 235 124 5 199 431 159 386 2.52e-52 182
Msa1450190 AT3G11520.2 44.351 239 124 5 201 438 143 373 2.75e-52 181
Msa1450190 AT2G26760.1 40.769 260 143 7 201 457 114 365 4.11e-52 181
Msa1450190 AT1G16330.1 39.216 255 148 3 216 470 395 642 1.06e-49 180
Msa1450190 AT1G76310.3 36.424 302 155 6 199 470 159 453 2.64e-49 175
Msa1450190 AT4G37490.1 37.050 278 160 8 200 470 148 417 6.13e-49 174
Msa1450190 AT2G17620.1 40.672 268 151 4 201 467 155 415 3.44e-48 172
Msa1450190 AT4G35620.1 39.700 267 153 4 201 466 156 415 1.66e-47 170
Msa1450190 AT4G35620.2 42.672 232 125 4 201 431 156 380 6.41e-46 164
Msa1450190 AT5G06150.2 42.045 176 99 3 193 367 158 331 4.75e-39 145
Msa1450190 AT1G76310.4 45.029 171 91 3 199 367 159 328 9.47e-39 144
Msa1450190 AT1G20590.1 43.312 157 83 2 275 431 63 213 3.97e-34 129
Msa1450190 AT1G47210.1 49.219 128 61 2 179 304 67 192 3.62e-32 122
Msa1450190 AT1G34460.9 34.091 176 93 4 193 367 234 387 5.50e-22 99.0
Msa1450190 AT1G34460.6 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa1450190 AT1G34460.3 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa1450190 AT1G34460.8 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa1450190 AT1G34460.1 34.091 176 93 4 193 367 248 401 6.13e-22 99.0
Msa1450190 AT1G34460.7 34.091 176 93 4 193 367 248 401 6.42e-22 99.0
Msa1450190 AT1G34460.2 34.091 176 93 4 193 367 245 398 6.60e-22 99.0
Msa1450190 AT1G34460.4 34.091 176 93 4 193 367 245 398 6.60e-22 99.0
Msa1450190 AT1G34460.5 34.091 176 93 4 193 367 248 401 8.37e-22 98.6
Msa1450190 AT1G14750.1 34.969 163 96 4 247 405 384 540 6.56e-16 80.9
Msa1450190 AT1G14750.3 34.969 163 96 4 247 405 384 540 8.53e-16 80.5
Msa1450190 AT1G14750.2 34.969 163 96 4 247 405 216 372 9.22e-16 79.7
Msa1450190 AT1G14750.4 34.969 163 95 5 247 405 216 371 1.52e-14 75.9
Msa1450190 AT5G65420.1 25.957 235 157 8 182 403 5 235 9.02e-11 63.5

Find 109 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 tig0032806:+34304 Msa1450190:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 tig0032806:+32789 Msa1450190:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 tig0032806:-32986 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 tig0032806:-34339 None:intergenic
CAAAGCCATGTAGCTGCTTT+TGG 0.238844 tig0032806:+37513 Msa1450190:three_prime_UTR
TGTAAATTTATGCATTTCTA+AGG 0.255446 tig0032806:+37249 Msa1450190:exon
AACAGTGACTGCACCGGTTT+TGG 0.269524 tig0032806:-37215 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 tig0032806:-34717 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 tig0032806:-35697 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 tig0032806:-32758 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 tig0032806:-34015 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 tig0032806:+36181 Msa1450190:CDS
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 tig0032806:+37220 Msa1450190:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 tig0032806:+36172 Msa1450190:intron
ATTTGCGTTTGAATTAGAAT+TGG 0.346535 tig0032806:+32671 Msa1450190:five_prime_UTR
TTCTCCATGTAATTGGTTGA+TGG 0.359361 tig0032806:-34710 None:intergenic
CACCATTGCTGCAGTAACTT+TGG 0.388234 tig0032806:+33876 Msa1450190:CDS
CTACGTAACTAATGAGTAAA+GGG 0.406984 tig0032806:-37339 None:intergenic
TGCAAGTAACACCAAGCAAC+TGG 0.415916 tig0032806:-35169 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 tig0032806:-32788 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 tig0032806:-34009 None:intergenic
ATGGCTTTGTTGAATTATAA+CGG 0.426708 tig0032806:-37499 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 tig0032806:-36460 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 tig0032806:-35095 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 tig0032806:+32840 Msa1450190:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 tig0032806:-36291 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 tig0032806:+34759 Msa1450190:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 tig0032806:+36402 Msa1450190:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 tig0032806:+37202 Msa1450190:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 tig0032806:-36434 None:intergenic
AACATGGTCACTTATGTTGT+TGG 0.450701 tig0032806:-33926 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 tig0032806:-34278 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 tig0032806:-36301 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 tig0032806:-37238 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 tig0032806:+36276 Msa1450190:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 tig0032806:+35691 Msa1450190:CDS
ATCAGAATTCCACGCATGCT+TGG 0.476428 tig0032806:-34752 None:intergenic
TTTGCGTTTGAATTAGAATT+GGG 0.476481 tig0032806:+32672 Msa1450190:five_prime_UTR
AGTTGTATCAACATGTTACA+TGG 0.477451 tig0032806:-37423 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 tig0032806:+32776 Msa1450190:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 tig0032806:-33791 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 tig0032806:-35109 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 tig0032806:+37176 Msa1450190:intron
ACTACGTAACTAATGAGTAA+AGG 0.496801 tig0032806:-37340 None:intergenic
TGTAAGAAGATTGTGCTGCT+TGG 0.497059 tig0032806:-35813 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 tig0032806:+32902 Msa1450190:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 tig0032806:+36456 Msa1450190:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 tig0032806:+32907 Msa1450190:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 tig0032806:+35070 Msa1450190:intron
GAACTTTGTTGTATATATCA+GGG 0.514973 tig0032806:-34338 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 tig0032806:+34766 Msa1450190:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 tig0032806:+34239 Msa1450190:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 tig0032806:+33795 Msa1450190:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 tig0032806:-36497 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 tig0032806:+35111 Msa1450190:CDS
ATAATAACGAAGAAGAAATA+CGG 0.531266 tig0032806:+32529 Msa1450190:five_prime_UTR
TATATTTCTCACGTATAGCA+TGG 0.531941 tig0032806:-36513 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 tig0032806:-36300 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 tig0032806:+36303 Msa1450190:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 tig0032806:+35158 Msa1450190:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 tig0032806:+33840 Msa1450190:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 tig0032806:-36257 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 tig0032806:-33907 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 tig0032806:+32814 Msa1450190:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 tig0032806:-34004 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 tig0032806:-33878 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 tig0032806:+34706 Msa1450190:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 tig0032806:+34251 Msa1450190:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 tig0032806:+35144 Msa1450190:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 tig0032806:+33810 Msa1450190:CDS
AGCAGCACAATCTTCTTACA+AGG 0.568751 tig0032806:+35816 Msa1450190:CDS
GCTCTGCTAAATAATTTGCC+AGG 0.570353 tig0032806:-36199 None:intergenic
TAATTCCAAAAGCAGCTACA+TGG 0.573264 tig0032806:-37518 None:intergenic
CTAAGGACTCGATCATGACT+CGG 0.574320 tig0032806:+37266 Msa1450190:three_prime_UTR
AACTTTGTTGTATATATCAG+GGG 0.581055 tig0032806:-34337 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 tig0032806:-32961 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 tig0032806:+36525 Msa1450190:CDS
CGGAATTTCCTGTACAATGA+GGG 0.593704 tig0032806:+37286 Msa1450190:three_prime_UTR
GCCTGGAACAGTGACTGCAC+CGG 0.595943 tig0032806:-37221 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 tig0032806:+32815 Msa1450190:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 tig0032806:+36481 Msa1450190:CDS
TTTCTAAAAGTCAAGATTTG+GGG 0.601914 tig0032806:+32477 Msa1450190:five_prime_UTR
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 tig0032806:+36247 Msa1450190:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 tig0032806:+34769 Msa1450190:CDS
TACAAAGGTCAGGCGATCCG+AGG 0.611523 tig0032806:-34268 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 tig0032806:+35614 Msa1450190:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 tig0032806:-36286 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 tig0032806:+32783 Msa1450190:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 tig0032806:-35121 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 tig0032806:-36179 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 tig0032806:-35665 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 tig0032806:+32777 Msa1450190:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 tig0032806:+33970 Msa1450190:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 tig0032806:-35582 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 tig0032806:+36304 Msa1450190:CDS
TCGGAATTTCCTGTACAATG+AGG 0.638297 tig0032806:+37285 Msa1450190:three_prime_UTR
ACATTCTTGCATTGAAAGTG+TGG 0.640397 tig0032806:-33959 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 tig0032806:+32903 Msa1450190:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 tig0032806:+34243 Msa1450190:CDS
AACAGTGAGTTGAAGTACTG+AGG 0.651840 tig0032806:+37448 Msa1450190:three_prime_UTR
GATATTTCTCCAAGCATGCG+TGG 0.654313 tig0032806:+34743 Msa1450190:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 tig0032806:-32775 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 tig0032806:+34003 Msa1450190:CDS
ATACCCATGGATGTTCTGAG+TGG 0.668616 tig0032806:-36307 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 tig0032806:+35569 Msa1450190:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 tig0032806:+37181 Msa1450190:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 tig0032806:-33942 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 tig0032806:+32908 Msa1450190:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 tig0032806:+34350 Msa1450190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTAAAACATGAATT+TGG - tig0032806:33021-33040 None:intergenic 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG - tig0032806:33416-33435 None:intergenic 10.0%
!! ATAATATAAAAAAAGTTACT+AGG + tig0032806:34126-34145 Msa1450190:intron 10.0%
!! ATTAATACTACTAATTATAA+TGG - tig0032806:36730-36749 None:intergenic 10.0%
!!! AATTGGTACATTTTATTTTA+TGG - tig0032806:33310-33329 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG - tig0032806:33417-33436 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG - tig0032806:34121-34140 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG - tig0032806:34122-34141 None:intergenic 15.0%
!! GATTGTTTAATAATGAATTA+CGG - tig0032806:34381-34400 None:intergenic 15.0%
!! TATTTATATCTTCTAAACAA+AGG - tig0032806:36357-36376 None:intergenic 15.0%
!!! ATTTTCTAAAAGTCAAGATT+TGG + tig0032806:32475-32494 Msa1450190:five_prime_UTR 20.0%
!!! TTTTCTAAAAGTCAAGATTT+GGG + tig0032806:32476-32495 Msa1450190:five_prime_UTR 20.0%
!! ATAATAACGAAGAAGAAATA+CGG + tig0032806:32529-32548 Msa1450190:five_prime_UTR 20.0%
!! ATCAATATCACCATATAATT+AGG + tig0032806:33040-33059 Msa1450190:intron 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG - tig0032806:33073-33092 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG + tig0032806:33086-33105 Msa1450190:intron 20.0%
!! TATGATAGAATAGAACATTA+TGG + tig0032806:33123-33142 Msa1450190:intron 20.0%
!! TATTGAAATAAACCTTTGTT+TGG - tig0032806:34018-34037 None:intergenic 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG + tig0032806:34055-34074 Msa1450190:intron 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG - tig0032806:34618-34637 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG + tig0032806:34661-34680 Msa1450190:intron 20.0%
!!! GTAAGTACTATTTTTTGTAA+TGG + tig0032806:35205-35224 Msa1450190:intron 20.0%
!!! AATTTAACTTAGTATGTGTT+TGG + tig0032806:35865-35884 Msa1450190:intron 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG + tig0032806:36154-36173 Msa1450190:intron 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG - tig0032806:37126-37145 None:intergenic 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG + tig0032806:37124-37143 Msa1450190:intron 20.0%
!! TGTAAATTTATGCATTTCTA+AGG + tig0032806:37249-37268 Msa1450190:exon 20.0%
!! TTTCTAAAAGTCAAGATTTG+GGG + tig0032806:32477-32496 Msa1450190:five_prime_UTR 25.0%
!!! TAATAGTAGCATTGTTTTGT+TGG + tig0032806:32578-32597 Msa1450190:five_prime_UTR 25.0%
!!! TAATGTCTTGTTTGAAAAAC+AGG + tig0032806:32636-32655 Msa1450190:five_prime_UTR 25.0%
! ATTTGCGTTTGAATTAGAAT+TGG + tig0032806:32671-32690 Msa1450190:five_prime_UTR 25.0%
! TTTGCGTTTGAATTAGAATT+GGG + tig0032806:32672-32691 Msa1450190:five_prime_UTR 25.0%
!! TGTTAAACAATCCAATTTTC+AGG + tig0032806:32975-32994 Msa1450190:CDS 25.0%
!! ATGAATTTGGTGACAAAATT+GGG - tig0032806:33008-33027 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG + tig0032806:33098-33117 Msa1450190:intron 25.0%
! ACTATCATTTCCTAATGATA+TGG - tig0032806:33209-33228 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG + tig0032806:33315-33334 Msa1450190:intron 25.0%
! AAATTGTAGAATCTCATCTT+AGG + tig0032806:33494-33513 Msa1450190:intron 25.0%
! CTGTAAAATGGATAACTAAT+CGG - tig0032806:33722-33741 None:intergenic 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG - tig0032806:33759-33778 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG + tig0032806:34239-34258 Msa1450190:CDS 25.0%
! AGACATCGATAAAAAGTTAA+AGG + tig0032806:34290-34309 Msa1450190:CDS 25.0%
! AGTTAAAGGATTCTCAAATT+TGG + tig0032806:34304-34323 Msa1450190:CDS 25.0%
!! AACTTTGTTGTATATATCAG+GGG - tig0032806:34340-34359 None:intergenic 25.0%
!! GAACTTTGTTGTATATATCA+GGG - tig0032806:34341-34360 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG - tig0032806:34608-34627 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG - tig0032806:34862-34881 None:intergenic 25.0%
! TAGATGAGAATTCTTTGATA+AGG - tig0032806:34868-34887 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG - tig0032806:34894-34913 None:intergenic 25.0%
! CAAAAACATAGTTGAATGAT+AGG + tig0032806:34900-34919 Msa1450190:intron 25.0%
! ATAGGATATATACAATGTGA+TGG + tig0032806:34918-34937 Msa1450190:intron 25.0%
! ACTTCAACAAACTGTAATTA+AGG - tig0032806:34998-35017 None:intergenic 25.0%
!! TCTTTTTGAACTATGAACTA+AGG + tig0032806:35283-35302 Msa1450190:intron 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG - tig0032806:35392-35411 None:intergenic 25.0%
!!! TGTTTTTTCCCAATATCATT+CGG + tig0032806:35503-35522 Msa1450190:intron 25.0%
! TAATACATACACAAAAGAAG+AGG + tig0032806:35614-35633 Msa1450190:CDS 25.0%
! AAAAGAAGAGGTAGTAAAAA+TGG + tig0032806:35626-35645 Msa1450190:CDS 25.0%
! TTGATCTATTATTGTCTTTC+AGG + tig0032806:35782-35801 Msa1450190:intron 25.0%
! CTAAGTTAAATTGTAGATAG+TGG - tig0032806:35857-35876 None:intergenic 25.0%
! TGAGAAATATAAACATGAGA+AGG + tig0032806:36525-36544 Msa1450190:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG - tig0032806:36635-36654 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG + tig0032806:36828-36847 Msa1450190:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG - tig0032806:36832-36851 None:intergenic 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG - tig0032806:37121-37140 None:intergenic 25.0%
!! AAGTAGAATACTTCATTTTG+AGG + tig0032806:37473-37492 Msa1450190:three_prime_UTR 25.0%
!!! ATGGCTTTGTTGAATTATAA+CGG - tig0032806:37502-37521 None:intergenic 25.0%
TGTTTAACACGTTTATCATG+TGG - tig0032806:32964-32983 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG - tig0032806:32989-33008 None:intergenic 30.0%
! CATGAATTTGGTGACAAAAT+TGG - tig0032806:33009-33028 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG - tig0032806:33053-33072 None:intergenic 30.0%
!!! AAGCTTTTTTCAACTAAGTG+GGG - tig0032806:33172-33191 None:intergenic 30.0%
!!! CAAGCTTTTTTCAACTAAGT+GGG - tig0032806:33173-33192 None:intergenic 30.0%
GTTGTTATCACCATATCATT+AGG + tig0032806:33196-33215 Msa1450190:intron 30.0%
GATTGATCTATCTAGGTAAT+TGG + tig0032806:33257-33276 Msa1450190:intron 30.0%
AATAGATTTGCCTTCAAAGT+TGG + tig0032806:33352-33371 Msa1450190:intron 30.0%
ATAGATTTGCCTTCAAAGTT+GGG + tig0032806:33353-33372 Msa1450190:intron 30.0%
AAGATTGTCCAATAGTTAAG+AGG + tig0032806:33571-33590 Msa1450190:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG + tig0032806:33720-33739 Msa1450190:intron 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG - tig0032806:33746-33765 None:intergenic 30.0%
AGAATTGTCTACCATAAAGA+TGG + tig0032806:33840-33859 Msa1450190:CDS 30.0%
!! TTTTGACTCTACCATCTTTA+TGG - tig0032806:33854-33873 None:intergenic 30.0%
! AATAAACCTTTGTTTGGACT+TGG - tig0032806:34012-34031 None:intergenic 30.0%
TGACATTGCAATTTAGCATA+TGG - tig0032806:34090-34109 None:intergenic 30.0%
GGTGAAATATCTTAGAAGTT+TGG + tig0032806:34173-34192 Msa1450190:intron 30.0%
AGACAACATGACAGTAATTA+TGG - tig0032806:34202-34221 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG + tig0032806:34243-34262 Msa1450190:CDS 30.0%
! CTTTTTATCGATGTCTACAA+AGG - tig0032806:34286-34305 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG - tig0032806:34342-34361 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG + tig0032806:34508-34527 Msa1450190:intron 30.0%
AAGAATAGAGCAGAATCATT+AGG + tig0032806:34629-34648 Msa1450190:intron 30.0%
TGATAAGGTTATGGACAAAA+AGG - tig0032806:34853-34872 None:intergenic 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG - tig0032806:34891-34910 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG + tig0032806:34946-34965 Msa1450190:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG + tig0032806:34967-34986 Msa1450190:intron 30.0%
!!! ACTATTTTTTGTAATGGTCC+TGG + tig0032806:35211-35230 Msa1450190:intron 30.0%
ACTATGAACTAAGGATATCT+AGG + tig0032806:35292-35311 Msa1450190:intron 30.0%
TCATTTAATCCGAATGCATT+TGG + tig0032806:35438-35457 Msa1450190:intron 30.0%
TAACTATCACCAAATGCATT+CGG - tig0032806:35450-35469 None:intergenic 30.0%
ATCTTAGACCGAATGATATT+GGG - tig0032806:35514-35533 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG - tig0032806:35700-35719 None:intergenic 30.0%
!! ATGGATTTTGACATGTTTGA+TGG + tig0032806:35928-35947 Msa1450190:intron 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG - tig0032806:36006-36025 None:intergenic 30.0%
TATATTTCTCACGTATAGCA+TGG - tig0032806:36516-36535 None:intergenic 30.0%
AACATTGGTCAACTGAAAAA+AGG - tig0032806:36571-36590 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG - tig0032806:36586-36605 None:intergenic 30.0%
TTGAAAGATGACTTACATTC+AGG + tig0032806:36791-36810 Msa1450190:intron 30.0%
TGAAAGATGACTTACATTCA+GGG + tig0032806:36792-36811 Msa1450190:intron 30.0%
TAGGAACAGAGATAGTATAT+AGG + tig0032806:36847-36866 Msa1450190:intron 30.0%
CACTCAATAATTGAGAATGT+TGG - tig0032806:36903-36922 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG - tig0032806:37057-37076 None:intergenic 30.0%
CTACGTAACTAATGAGTAAA+GGG - tig0032806:37342-37361 None:intergenic 30.0%
ACTACGTAACTAATGAGTAA+AGG - tig0032806:37343-37362 None:intergenic 30.0%
AGTTGTATCAACATGTTACA+TGG - tig0032806:37426-37445 None:intergenic 30.0%
ACTCAGAATTACCAGATCAA+GGG + tig0032806:32777-32796 Msa1450190:CDS 35.0%
! CTCAGAAGAAACAACCTTTT+TGG - tig0032806:32857-32876 None:intergenic 35.0%
ATTATGGCGTAATTTGATCC+TGG + tig0032806:33139-33158 Msa1450190:intron 35.0%
!!! TTTTTTCAACTAAGTGGGGT+CGG - tig0032806:33168-33187 None:intergenic 35.0%
!!! CCAAGCTTTTTTCAACTAAG+TGG - tig0032806:33174-33193 None:intergenic 35.0%
CCACTTAGTTGAAAAAAGCT+TGG + tig0032806:33171-33190 Msa1450190:intron 35.0%
ACATGCAGATTGATCTATCT+AGG + tig0032806:33250-33269 Msa1450190:intron 35.0%
ACTTACATACCCAACTTTGA+AGG - tig0032806:33365-33384 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG + tig0032806:33497-33516 Msa1450190:intron 35.0%
CTAACCTACTCTCTTTACTA+GGG - tig0032806:33547-33566 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG - tig0032806:33548-33567 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG - tig0032806:33582-33601 None:intergenic 35.0%
! TTATCCATTTTACAGGCCAA+AGG + tig0032806:33727-33746 Msa1450190:intron 35.0%
! TTGTGCTGATGAAACTTCAA+TGG - tig0032806:33794-33813 None:intergenic 35.0%
ACAAGAGGATGTTAAAGAGA+AGG + tig0032806:33810-33829 Msa1450190:CDS 35.0%
TTGGACATACAATGTTCAGT+TGG - tig0032806:33910-33929 None:intergenic 35.0%
AACATGGTCACTTATGTTGT+TGG - tig0032806:33929-33948 None:intergenic 35.0%
ACATTCTTGCATTGAAAGTG+TGG - tig0032806:33962-33981 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG + tig0032806:34103-34122 Msa1450190:intron 35.0%
AATGAATTACGGACAAACCT+CGG - tig0032806:34370-34389 None:intergenic 35.0%
TGCAAAATGAAATATGCTCC+TGG - tig0032806:34538-34557 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG + tig0032806:34706-34725 Msa1450190:CDS 35.0%
TTCTCCATGTAATTGGTTGA+TGG - tig0032806:34713-34732 None:intergenic 35.0%
!! AATTCTGATTGATTGGCTTG+TGG + tig0032806:34766-34785 Msa1450190:CDS 35.0%
! TTACCATCAAGCTTTTGTTG+TGG + tig0032806:35018-35037 Msa1450190:intron 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG + tig0032806:35030-35049 Msa1450190:intron 35.0%
TCAGAAACCTGAAAAGGAAT+AGG - tig0032806:35059-35078 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG + tig0032806:35058-35077 Msa1450190:intron 35.0%
TATTCCTCAGAAACCTGAAA+AGG - tig0032806:35065-35084 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG + tig0032806:35111-35130 Msa1450190:CDS 35.0%
CAAGTTTGATTCAGAAACAC+AGG + tig0032806:35144-35163 Msa1450190:CDS 35.0%
AGAATTCTAACTCTGAGCAA+CGG - tig0032806:35250-35269 None:intergenic 35.0%
CATCTTAGACCGAATGATAT+TGG - tig0032806:35515-35534 None:intergenic 35.0%
! AGATGCACTTCTTTTCTTCA+TGG + tig0032806:35530-35549 Msa1450190:intron 35.0%
AGAGGTAGTAAAAATGGAGA+AGG + tig0032806:35632-35651 Msa1450190:CDS 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG - tig0032806:35693-35712 None:intergenic 35.0%
! TTAGTATGTGTTTGGTTTCG+TGG + tig0032806:35873-35892 Msa1450190:intron 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG - tig0032806:35908-35927 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG + tig0032806:35909-35928 Msa1450190:intron 35.0%
TTGGTTAGAATCACTTCTTG+AGG - tig0032806:35987-36006 None:intergenic 35.0%
AGTGATTCTAACCAAAAGCT+AGG + tig0032806:35992-36011 Msa1450190:intron 35.0%
!! CTGGATTATTTTATGCTGAC+AGG + tig0032806:36111-36130 Msa1450190:intron 35.0%
TAGTCAACATTTCATACCCA+TGG - tig0032806:36323-36342 None:intergenic 35.0%
ATATATGCAGACTACAACTC+TGG + tig0032806:36402-36421 Msa1450190:intron 35.0%
GATCTGCAACTTAATACCAA+AGG + tig0032806:36481-36500 Msa1450190:CDS 35.0%
! TCTAAAGGGTACAATACAAC+TGG - tig0032806:37043-37062 None:intergenic 35.0%
AGTTGTATTGTACCCTTTAG+AGG + tig0032806:37042-37061 Msa1450190:intron 35.0%
GCAAAAGATGTTTCCTCTAA+AGG - tig0032806:37058-37077 None:intergenic 35.0%
! ACATCTTTTGCATCTGATTG+AGG + tig0032806:37067-37086 Msa1450190:intron 35.0%
TCTGATTGAGGTTCATAAAC+CGG + tig0032806:37079-37098 Msa1450190:intron 35.0%
!! AGGACAGCATATTATTTTGC+CGG - tig0032806:37101-37120 None:intergenic 35.0%
CATAAATTTACACTTGAGCC+TGG - tig0032806:37241-37260 None:intergenic 35.0%
TAAAAACACCCTCATTGTAC+AGG - tig0032806:37297-37316 None:intergenic 35.0%
TAATTCCAAAAGCAGCTACA+TGG - tig0032806:37521-37540 None:intergenic 35.0%
GCTCTTCTTCTTCTTCTTCA+AGG + tig0032806:32697-32716 Msa1450190:five_prime_UTR 40.0%
CTTGATCTGGTAATTCTGAG+TGG - tig0032806:32778-32797 None:intergenic 40.0%
CACTCAGAATTACCAGATCA+AGG + tig0032806:32776-32795 Msa1450190:CDS 40.0%
AATTACCAGATCAAGGGCAA+AGG + tig0032806:32783-32802 Msa1450190:CDS 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG + tig0032806:32790-32809 Msa1450190:CDS 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG - tig0032806:32820-32839 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG - tig0032806:32821-32840 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG + tig0032806:32840-32859 Msa1450190:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG + tig0032806:32902-32921 Msa1450190:CDS 40.0%
TGTTCCTCACCGTAAAAGAA+GGG + tig0032806:32903-32922 Msa1450190:CDS 40.0%
TTTGCTCGACCAAGTTCAAT+TGG - tig0032806:33327-33346 None:intergenic 40.0%
AAGTCAGCTGAAATTGCTAG+AGG + tig0032806:33381-33400 Msa1450190:intron 40.0%
AGTCAGCTGAAATTGCTAGA+GGG + tig0032806:33382-33401 Msa1450190:intron 40.0%
AACTCCTTTGGCCTGTAAAA+TGG - tig0032806:33734-33753 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG + tig0032806:33795-33814 Msa1450190:CDS 40.0%
AACCAAAGTTACTGCAGCAA+TGG - tig0032806:33881-33900 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG + tig0032806:33970-33989 Msa1450190:CDS 40.0%
AAGCCACTAACTCACTAGAA+AGG + tig0032806:34152-34171 Msa1450190:intron 40.0%
! TCACCTTTCTAGTGAGTTAG+TGG - tig0032806:34158-34177 None:intergenic 40.0%
TATCGATGTCTACAAAGGTC+AGG - tig0032806:34281-34300 None:intergenic 40.0%
CTGCAACTTCTCCATGTAAT+TGG - tig0032806:34720-34739 None:intergenic 40.0%
TGCGTGGAATTCTGATTGAT+TGG + tig0032806:34759-34778 Msa1450190:CDS 40.0%
AAGCCACAACAAAAGCTTGA+TGG - tig0032806:35024-35043 None:intergenic 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG + tig0032806:35049-35068 Msa1450190:intron 40.0%
! GGTTTCTGAGGAATATAAGC+TGG + tig0032806:35070-35089 Msa1450190:intron 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG - tig0032806:35098-35117 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG - tig0032806:35112-35131 None:intergenic 40.0%
TTGAGAGAAACCGATCAATG+AGG - tig0032806:35124-35143 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG - tig0032806:35232-35251 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG - tig0032806:35249-35268 None:intergenic 40.0%
ACAGTAAACTGAGGATCGAA+AGG - tig0032806:35351-35370 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG + tig0032806:35350-35369 Msa1450190:intron 40.0%
ATCATCTCCACAGTAAACTG+AGG - tig0032806:35360-35379 None:intergenic 40.0%
AAGCAAAATTCTTCCACTCG+AGG - tig0032806:35585-35604 None:intergenic 40.0%
CAGATAACTGAAAACGCAGA+AGG - tig0032806:35668-35687 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG - tig0032806:35694-35713 None:intergenic 40.0%
CCACAACCAAAACATTTCTC+AGG + tig0032806:35691-35710 Msa1450190:CDS 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG - tig0032806:35816-35835 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG + tig0032806:35816-35835 Msa1450190:CDS 40.0%
GTGGTAGAGATAACCAAAAG+TGG + tig0032806:35892-35911 Msa1450190:intron 40.0%
CATTGCAAAATCAAACACGC+TGG + tig0032806:36092-36111 Msa1450190:intron 40.0%
! GCTCTGCTAAATAATTTGCC+AGG - tig0032806:36202-36221 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG - tig0032806:36437-36456 None:intergenic 40.0%
AAAACCAGTTGTTCTTGCAC+TGG + tig0032806:36456-36475 Msa1450190:CDS 40.0%
! AGCATTTTCAGTGTGACTAG+TGG - tig0032806:36600-36619 None:intergenic 40.0%
CACTGAAAATGCTACTCCAT+CGG + tig0032806:36607-36626 Msa1450190:intron 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG - tig0032806:36626-36645 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG - tig0032806:37023-37042 None:intergenic 40.0%
TGCTTCATGTGACAGTTCAA+TGG + tig0032806:37176-37195 Msa1450190:intron 40.0%
TCGGAATTTCCTGTACAATG+AGG + tig0032806:37285-37304 Msa1450190:three_prime_UTR 40.0%
CGGAATTTCCTGTACAATGA+GGG + tig0032806:37286-37305 Msa1450190:three_prime_UTR 40.0%
!! AACAGTGAGTTGAAGTACTG+AGG + tig0032806:37448-37467 Msa1450190:three_prime_UTR 40.0%
CAAAACCTTTGCCCTTGATC+TGG - tig0032806:32791-32810 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG + tig0032806:32789-32808 Msa1450190:CDS 45.0%
GACCCTCTTCGGAAAATGAA+GGG + tig0032806:32815-32834 Msa1450190:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG - tig0032806:32901-32920 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG - tig0032806:32915-32934 None:intergenic 45.0%
GTCAGCTGAAATTGCTAGAG+GGG + tig0032806:33383-33402 Msa1450190:intron 45.0%
TTAGGTGGTAGAGACATGTG+TGG + tig0032806:33512-33531 Msa1450190:intron 45.0%
GAGACCCTAGTAAAGAGAGT+AGG + tig0032806:33540-33559 Msa1450190:intron 45.0%
CACCATTGCTGCAGTAACTT+TGG + tig0032806:33876-33895 Msa1450190:CDS 45.0%
GTGTGGTGTCTGTCATAACA+TGG - tig0032806:33945-33964 None:intergenic 45.0%
ACCTCTCCAAGTCCAAACAA+AGG + tig0032806:34003-34022 Msa1450190:CDS 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG - tig0032806:34007-34026 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG + tig0032806:34517-34536 Msa1450190:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG + tig0032806:34743-34762 Msa1450190:CDS 45.0%
ATCAGAATTCCACGCATGCT+TGG - tig0032806:34755-34774 None:intergenic 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG + tig0032806:34769-34788 Msa1450190:CDS 45.0%
TGCAAGTAACACCAAGCAAC+TGG - tig0032806:35172-35191 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG - tig0032806:36182-36201 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG + tig0032806:36181-36200 Msa1450190:CDS 45.0%
ACAGTTTCTACCTTCTCGTG+TGG + tig0032806:36247-36266 Msa1450190:CDS 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG - tig0032806:36303-36322 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG - tig0032806:36304-36323 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG + tig0032806:36303-36322 Msa1450190:CDS 45.0%
CAACCACTCAGAACATCCAT+GGG + tig0032806:36304-36323 Msa1450190:CDS 45.0%
! ATACCCATGGATGTTCTGAG+TGG - tig0032806:36310-36329 None:intergenic 45.0%
TCTTCCAGTGCAAGAACAAC+TGG - tig0032806:36463-36482 None:intergenic 45.0%
AGCATGGAGAGAACAACCTT+TGG - tig0032806:36500-36519 None:intergenic 45.0%
CATGTGACAGTTCAATGGTG+TGG + tig0032806:37181-37200 Msa1450190:intron 45.0%
GGCAAAACTGTCTCCAAAAC+CGG + tig0032806:37202-37221 Msa1450190:CDS 45.0%
CTAAGGACTCGATCATGACT+CGG + tig0032806:37266-37285 Msa1450190:three_prime_UTR 45.0%
!! CAAAGCCATGTAGCTGCTTT+TGG + tig0032806:37513-37532 Msa1450190:three_prime_UTR 45.0%
!! TATTATTATTACTTTATAAT+AGG + tig0032806:34460-34479 Msa1450190:intron 5.0%
!! ATTATTATTACTTTATAATA+GGG + tig0032806:34461-34480 Msa1450190:intron 5.0%
GAGTGGACGCTCTTCATCTT+TGG - tig0032806:32761-32780 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG + tig0032806:32793-32812 Msa1450190:CDS 50.0%
GGACCCTCTTCGGAAAATGA+AGG + tig0032806:32814-32833 Msa1450190:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG + tig0032806:32908-32927 Msa1450190:CDS 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG + tig0032806:34251-34270 Msa1450190:CDS 50.0%
CAACAAAGTTCGAGTCACCG+AGG + tig0032806:34350-34369 Msa1450190:CDS 50.0%
AAACACAGGCTCCAGTTGCT+TGG + tig0032806:35158-35177 Msa1450190:CDS 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG + tig0032806:36172-36191 Msa1450190:intron 50.0%
CTGCTGTATTCCTTGCCAGA+TGG + tig0032806:36276-36295 Msa1450190:CDS 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG - tig0032806:37218-37237 None:intergenic 50.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG + tig0032806:32804-32823 Msa1450190:CDS 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG - tig0032806:32910-32929 None:intergenic 55.0%
CCTCACCGTAAAAGAAGGGC+AGG + tig0032806:32907-32926 Msa1450190:CDS 55.0%
TACAAAGGTCAGGCGATCCG+AGG - tig0032806:34271-34290 None:intergenic 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG + tig0032806:34781-34800 Msa1450190:intron 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG + tig0032806:34787-34806 Msa1450190:intron 55.0%
AGAGATGTGTGCTCCTCGAG+TGG + tig0032806:35569-35588 Msa1450190:CDS 55.0%
TGAGTGGTTGAGGGTCCATC+TGG - tig0032806:36294-36313 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACC+AGG - tig0032806:33160-33179 None:intergenic 60.0%
GCAGAAGCAGCCACACGAGA+AGG - tig0032806:36260-36279 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG - tig0032806:36289-36308 None:intergenic 60.0%
ACCGGTGCAGTCACTGTTCC+AGG + tig0032806:37220-37239 Msa1450190:CDS 60.0%
GCCTGGAACAGTGACTGCAC+CGG - tig0032806:37224-37243 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0032806 gene 32472 37542 32472 ID=Msa1450190;Name=Msa1450190
tig0032806 mRNA 32472 37542 32472 ID=Msa1450190-mRNA-1;Parent=Msa1450190;Name=Msa1450190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=258|1|1|1|1|1|10|289|481
tig0032806 exon 32472 32996 32472 ID=Msa1450190-mRNA-1:exon:17298;Parent=Msa1450190-mRNA-1
tig0032806 exon 33742 34024 33742 ID=Msa1450190-mRNA-1:exon:17299;Parent=Msa1450190-mRNA-1
tig0032806 exon 34238 34371 34238 ID=Msa1450190-mRNA-1:exon:17300;Parent=Msa1450190-mRNA-1
tig0032806 exon 34698 34790 34698 ID=Msa1450190-mRNA-1:exon:17301;Parent=Msa1450190-mRNA-1
tig0032806 exon 35071 35204 35071 ID=Msa1450190-mRNA-1:exon:17302;Parent=Msa1450190-mRNA-1
tig0032806 exon 35560 35712 35560 ID=Msa1450190-mRNA-1:exon:17303;Parent=Msa1450190-mRNA-1
tig0032806 exon 35804 35837 35804 ID=Msa1450190-mRNA-1:exon:17304;Parent=Msa1450190-mRNA-1
tig0032806 exon 36176 36325 36176 ID=Msa1450190-mRNA-1:exon:17305;Parent=Msa1450190-mRNA-1
tig0032806 exon 36412 36546 36412 ID=Msa1450190-mRNA-1:exon:17306;Parent=Msa1450190-mRNA-1
tig0032806 exon 37191 37542 37191 ID=Msa1450190-mRNA-1:exon:17307;Parent=Msa1450190-mRNA-1
tig0032806 five_prime_UTR 32472 32729 32472 ID=Msa1450190-mRNA-1:five_prime_utr;Parent=Msa1450190-mRNA-1
tig0032806 CDS 32730 32996 32730 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 33742 34024 33742 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 34238 34371 34238 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 34698 34790 34698 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 35071 35204 35071 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 35560 35712 35560 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 35804 35837 35804 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 36176 36325 36176 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 36412 36546 36412 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 CDS 37191 37253 37191 ID=Msa1450190-mRNA-1:cds;Parent=Msa1450190-mRNA-1
tig0032806 three_prime_UTR 37254 37542 37254 ID=Msa1450190-mRNA-1:three_prime_utr;Parent=Msa1450190-mRNA-1
Gene Sequence

>Msa1450190

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>Msa1450190

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV*