AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796430 MtrunA17_Chr5g0399341 98.780 246 3 0 1 246 1 246 5.53e-167 461
Msa0796430 MtrunA17_Chr8g0340161 78.313 249 52 2 1 248 1 248 1.68e-131 371
Msa0796430 MtrunA17_Chr2g0331261 76.230 244 57 1 4 246 5 248 1.60e-124 353
Msa0796430 MtrunA17_Chr4g0030861 62.832 226 81 2 24 246 26 251 1.92e-91 270
Msa0796430 MtrunA17_Chr7g0264961 62.449 245 91 1 3 246 5 249 4.81e-90 266
Msa0796430 MtrunA17_Chr1g0212671 55.061 247 108 2 3 247 5 250 1.26e-89 265
Msa0796430 MtrunA17_Chr1g0146161 54.812 239 103 3 1 238 1 235 2.70e-83 249
Msa0796430 MtrunA17_Chr7g0222791 54.878 246 110 1 3 247 5 250 9.28e-80 240
Msa0796430 MtrunA17_Chr1g0188771 50.833 240 117 1 3 241 5 244 1.21e-78 237
Msa0796430 MtrunA17_Chr1g0146171 52.610 249 110 5 1 246 1 244 1.24e-78 237
Msa0796430 MtrunA17_Chr6g0478191 53.333 240 111 1 3 241 5 244 2.83e-73 224
Msa0796430 MtrunA17_Chr4g0020781 48.990 198 99 2 44 240 4 200 4.24e-58 184
Msa0796430 MtrunA17_Chr5g0426131 38.866 247 133 8 8 248 26 260 3.78e-40 139
Msa0796430 MtrunA17_Chr2g0326621 38.153 249 134 7 9 238 28 275 1.40e-38 135
Msa0796430 MtrunA17_Chr7g0264111 39.301 229 122 5 19 231 39 266 6.01e-38 134
Msa0796430 MtrunA17_Chr4g0029071 37.712 236 130 5 19 238 39 273 3.18e-36 129
Msa0796430 MtrunA17_Chr3g0145671 39.631 217 116 5 19 223 37 250 5.58e-36 129
Msa0796430 MtrunA17_Chr1g0199731 37.991 229 125 5 19 231 39 266 1.61e-33 122
Msa0796430 MtrunA17_Chr3g0113211 35.398 226 130 5 19 231 55 277 4.72e-31 116
Msa0796430 MtrunA17_Chr5g0436701 35.841 226 129 5 19 231 55 277 2.64e-30 114
Msa0796430 MtrunA17_Chr5g0397391 37.168 226 126 6 19 231 52 274 3.79e-29 111
Msa0796430 MtrunA17_Chr8g0386961 36.283 226 128 7 19 231 52 274 9.04e-29 110
Msa0796430 MtrunA17_Chr4g0006001 36.889 225 127 6 19 231 56 277 9.50e-29 110
Msa0796430 MtrunA17_Chr2g0284611 35.874 223 131 7 3 223 24 236 3.62e-27 105
Msa0796430 MtrunA17_Chr3g0079421 36.170 235 136 7 15 247 22 244 4.57e-27 105
Msa0796430 MtrunA17_Chr2g0284591 33.921 227 139 6 3 228 22 238 2.68e-26 103
Msa0796430 MtrunA17_Chr2g0284631 34.167 240 141 8 14 249 86 312 5.09e-26 103
Msa0796430 MtrunA17_Chr7g0217331 34.272 213 133 3 19 231 37 242 7.41e-26 102
Msa0796430 MtrunA17_Chr8g0379901 32.068 237 144 6 14 246 34 257 8.45e-26 102
Msa0796430 MtrunA17_Chr5g0435051 33.610 241 141 7 14 248 35 262 1.08e-25 101
Msa0796430 MtrunA17_Chr2g0333771 35.749 207 114 5 23 223 84 277 2.03e-25 101
Msa0796430 MtrunA17_Chr4g0001221 35.122 205 118 4 23 223 79 272 4.14e-25 100
Msa0796430 MtrunA17_Chr8g0379911 32.365 241 149 5 10 246 26 256 8.79e-25 99.4
Msa0796430 MtrunA17_Chr4g0044201 33.621 232 128 7 18 246 34 242 9.84e-24 96.3
Msa0796430 MtrunA17_Chr1g0201331 36.792 212 114 6 23 228 78 275 4.19e-23 95.5
Msa0796430 MtrunA17_Chr2g0284581 31.739 230 146 7 18 246 37 256 9.94e-23 94.0
Msa0796430 MtrunA17_Chr2g0284601 33.491 212 132 6 36 246 5 208 3.59e-21 88.6
Msa0796430 MtrunA17_Chr1g0184541 33.491 212 129 6 19 228 62 263 7.50e-19 83.6
Msa0796430 MtrunA17_Chr6g0467461 37.607 117 53 3 127 242 3 100 4.24e-17 74.7
Msa0796430 MtrunA17_Chr4g0038591 32.129 249 137 8 11 237 43 281 1.23e-16 77.8
Msa0796430 MtrunA17_Chr8g0362451 39.604 101 41 3 143 242 8 89 8.00e-15 68.2
Msa0796430 MtrunA17_Chr4g0001121 45.000 60 33 0 164 223 6 65 1.53e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796430 AT5G47450.1 79.757 247 49 1 1 246 1 247 3.00e-137 386
Msa0796430 AT4G17340.1 82.800 250 42 1 1 249 1 250 1.43e-133 377
Msa0796430 AT3G16240.1 76.639 244 56 1 1 243 1 244 1.74e-129 366
Msa0796430 AT3G26520.1 64.069 231 82 1 7 236 10 240 6.59e-99 289
Msa0796430 AT2G36830.1 61.538 247 94 1 3 248 5 251 2.61e-98 287
Msa0796430 AT4G01470.1 55.466 247 107 2 3 246 5 251 2.38e-88 262
Msa0796430 AT1G73190.1 53.909 243 106 2 5 241 10 252 3.19e-76 232
Msa0796430 AT1G17810.1 53.600 250 110 2 5 248 10 259 3.44e-76 232
Msa0796430 AT2G25810.1 54.000 250 110 3 1 249 1 246 5.59e-76 231
Msa0796430 AT3G47440.1 45.798 238 126 3 1 236 4 240 7.87e-66 205
Msa0796430 AT5G60660.1 38.865 229 123 6 19 231 39 266 5.04e-37 132
Msa0796430 AT2G37170.2 38.306 248 134 8 9 238 68 314 8.10e-37 132
Msa0796430 AT2G37170.1 38.095 252 137 8 9 242 25 275 8.84e-37 131
Msa0796430 AT2G37180.1 37.860 243 134 6 19 245 37 278 1.82e-36 130
Msa0796430 AT4G35100.1 41.364 220 108 7 19 223 38 251 5.00e-36 129
Msa0796430 AT4G35100.2 41.364 220 108 7 19 223 38 251 5.00e-36 129
Msa0796430 AT3G53420.1 39.419 241 127 7 19 242 39 277 8.16e-36 129
Msa0796430 AT3G53420.2 39.419 241 127 7 19 242 39 277 8.16e-36 129
Msa0796430 AT3G54820.1 36.145 249 133 7 19 243 38 284 1.75e-35 128
Msa0796430 AT2G39010.1 35.802 243 133 6 11 231 24 265 1.27e-34 125
Msa0796430 AT2G16850.1 39.631 217 116 5 19 223 36 249 1.46e-33 122
Msa0796430 AT4G00430.1 37.333 225 126 5 19 231 53 274 3.12e-30 114
Msa0796430 AT4G23400.1 36.889 225 127 5 19 231 53 274 3.81e-30 114
Msa0796430 AT3G61430.2 36.444 225 128 5 19 231 52 273 5.74e-30 113
Msa0796430 AT3G61430.1 36.444 225 128 5 19 231 52 273 5.74e-30 113
Msa0796430 AT1G52180.1 60.674 89 35 0 123 211 34 122 9.61e-30 108
Msa0796430 AT1G01620.1 36.889 225 127 5 19 231 52 273 1.09e-29 112
Msa0796430 AT2G45960.1 35.556 225 130 5 19 231 52 273 7.72e-29 110
Msa0796430 AT1G01620.2 39.153 189 102 4 55 231 14 201 1.07e-26 103
Msa0796430 AT4G18910.1 33.745 243 143 7 12 246 45 277 6.43e-26 103
Msa0796430 AT5G37810.1 33.913 230 139 6 19 246 43 261 9.33e-26 102
Msa0796430 AT1G80760.1 33.043 230 135 5 23 246 84 300 1.91e-25 102
Msa0796430 AT4G19030.1 32.099 243 147 6 12 246 48 280 2.08e-25 101
Msa0796430 AT5G37820.1 34.545 220 124 6 19 231 43 249 1.85e-24 99.0
Msa0796430 AT5G37820.2 33.333 231 139 6 19 246 79 297 3.25e-24 99.0
Msa0796430 AT3G06100.1 31.878 229 150 3 6 234 33 255 3.52e-24 98.2
Msa0796430 AT1G31885.1 32.653 245 141 5 5 232 20 257 4.41e-24 98.6
Msa0796430 AT3G06100.2 32.864 213 137 3 22 234 1 207 1.45e-22 92.8
Msa0796430 AT4G10380.1 32.895 228 132 6 6 223 59 275 2.19e-21 91.3
Msa0796430 AT1G31885.2 34.762 210 122 4 31 232 1 203 3.59e-21 89.7
Msa0796430 AT2G45960.2 35.025 197 116 4 19 206 52 245 6.17e-21 89.4
Msa0796430 AT2G45960.3 35.025 197 116 4 19 206 52 245 8.01e-21 89.7
Msa0796430 AT2G39010.2 32.222 180 106 4 11 175 24 202 2.77e-18 81.3
Msa0796430 AT2G34390.1 32.599 227 137 6 13 231 42 260 1.30e-17 80.5
Msa0796430 AT2G34390.2 33.028 218 130 6 22 231 9 218 1.11e-16 77.4
Msa0796430 AT3G06100.3 35.606 132 84 1 103 234 44 174 1.78e-15 72.8
Msa0796430 AT4G00430.2 34.783 161 97 3 19 174 53 210 5.81e-15 72.0

Find 108 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACCTATCTTCACCATTT+TGG 0.165967 5_3:-8480534 None:intergenic
GGCTTGGCTGGGTTGATTTA+TGG 0.208743 5_3:+8482434 Msa0796430:CDS
TTTCAAGTAAATTGCCAAAA+TGG 0.224680 5_3:+8480520 Msa0796430:exon
TTGCTGATAACTGGATCTAT+TGG 0.258320 5_3:+8482390 Msa0796430:CDS
TCCTAACTGGTCTCTTCTAT+TGG 0.261693 5_3:+8481735 Msa0796430:CDS
ATTTATGGTGACGTCTTTAT+TGG 0.274341 5_3:+8482449 Msa0796430:CDS
CACAGCAGCTGACCCCAAAA+AGG 0.277234 5_3:+8482235 Msa0796430:CDS
TTGAACCCAGCTGTTACTTT+TGG 0.284387 5_3:+8481686 Msa0796430:CDS
GCTTGCTGTCATGAACCTTT+TGG 0.293239 5_3:+8482562 Msa0796430:three_prime_UTR
ACCATTGCACCGATTGCTAT+TGG 0.294639 5_3:+8482269 Msa0796430:CDS
GTGGAAACTTTGCTGATAAC+TGG 0.301786 5_3:+8482381 Msa0796430:CDS
TTTGAGATTATCATAACATT+TGG 0.330146 5_3:+8482191 Msa0796430:CDS
TCAAACACTAATCCAGCAAT+AGG 0.335099 5_3:-8482173 None:intergenic
ACCTGAGATGTTTGCTGCTA+TGG 0.342340 5_3:-8481657 None:intergenic
TAATTAACCGAAGACTAATT+AGG 0.357090 5_3:-8480483 None:intergenic
ATGAACCCGGCTCGCTCATT+CGG 0.368228 5_3:+8482344 Msa0796430:CDS
CCATTGCACCGATTGCTATT+GGG 0.370396 5_3:+8482270 Msa0796430:CDS
CTCTGATAGATAAGCCTTAA+GGG 0.370976 5_3:-8480588 None:intergenic
TATTGGGTTGGACCATTGAT+AGG 0.371182 5_3:+8482407 Msa0796430:CDS
TGCTGATAACTGGATCTATT+GGG 0.375661 5_3:+8482391 Msa0796430:CDS
AAAATGGTGAAGATAGGTTT+TGG 0.375817 5_3:+8480536 Msa0796430:exon
CATGCATTTGCACTATTTGT+TGG 0.376412 5_3:+8481629 Msa0796430:CDS
TATGTTTCAGATGCTGGTGC+TGG 0.377613 5_3:-8482482 None:intergenic
TTGATAGGAGGAGGCTTGGC+TGG 0.378621 5_3:+8482422 Msa0796430:CDS
TATTGGATTGCCCAATTGCT+TGG 0.382330 5_3:+8481752 Msa0796430:CDS
AAGGGTGAGGGTGGTTAGTT+AGG 0.388555 5_3:+8480273 Msa0796430:five_prime_UTR
CAACGATGGAGCCAAGCAAT+TGG 0.397490 5_3:-8481763 None:intergenic
CCAACCCATGGAGTGGCTGC+TGG 0.411983 5_3:+8482143 Msa0796430:CDS
TAAGGGTATGTTTCAGATGC+TGG 0.414974 5_3:-8482488 None:intergenic
GGCAACATCACCATCCTAAC+TGG 0.420270 5_3:+8481722 Msa0796430:CDS
TAAAATTGAATCATGGTTGT+TGG 0.422441 5_3:+8482509 Msa0796430:exon
GCTGGACTGAACCCTATTGC+TGG 0.425119 5_3:+8482161 Msa0796430:CDS
ATGTTTCAGATGCTGGTGCT+GGG 0.433498 5_3:-8482481 None:intergenic
ACTCTGATAGATAAGCCTTA+AGG 0.443526 5_3:-8480589 None:intergenic
CAAAACACCTAATTAGTCTT+CGG 0.444194 5_3:+8480476 Msa0796430:five_prime_UTR
CTTGGATCCAGCGGGTTTAG+TGG 0.446191 5_3:+8481592 Msa0796430:CDS
TTCGGCCCAGCTGTGGTTAG+TGG 0.448499 5_3:+8482362 Msa0796430:CDS
TCAGTCCAGCAGCCACTCCA+TGG 0.457656 5_3:-8482148 None:intergenic
CTGGGCCGAATGAGCGAGCC+GGG 0.457837 5_3:-8482349 None:intergenic
ATTGCCAAAATGGTGAAGAT+AGG 0.457933 5_3:+8480530 Msa0796430:exon
ATTGCTATTGGGTTCGTTGT+CGG 0.459779 5_3:+8482281 Msa0796430:CDS
AAGTTTCCACTAACCACAGC+TGG 0.477936 5_3:-8482368 None:intergenic
GATTATCATAACATTTGGAT+TGG 0.481301 5_3:+8482196 Msa0796430:CDS
TGTTGCCCTTGCACCGTCCA+TGG 0.481816 5_3:-8480337 None:intergenic
GCTAATCCAAAAGTAACAGC+TGG 0.483137 5_3:-8481692 None:intergenic
TTCATTGAACCTCCACTGAA+TGG 0.492137 5_3:-8482326 None:intergenic
GCCATAGCAGCAAACATCTC+AGG 0.493649 5_3:+8481656 Msa0796430:CDS
AACGATGGAGCCAAGCAATT+GGG 0.495370 5_3:-8481762 None:intergenic
TGATAGGAGGAGGCTTGGCT+GGG 0.495930 5_3:+8482423 Msa0796430:CDS
TTGAAATAAAGAAAAGGGTG+AGG 0.496455 5_3:+8480260 Msa0796430:five_prime_UTR
ACCATTGATAGGAGGAGGCT+TGG 0.499184 5_3:+8482418 Msa0796430:CDS
ATACCCTTAAAATTGAATCA+TGG 0.499958 5_3:+8482502 Msa0796430:exon
TGCATAAGAATTCTTTGCCA+TGG 0.501658 5_3:-8480422 None:intergenic
CAAACACTAATCCAGCAATA+GGG 0.503864 5_3:-8482172 None:intergenic
TGAACAAGTTTAAGCTTGAA+AGG 0.504042 5_3:-8482533 None:intergenic
AAAATGTATATGATTGTGAA+AGG 0.508605 5_3:-8480373 None:intergenic
CACTAAACCCGCTGGATCCA+AGG 0.511849 5_3:-8481591 None:intergenic
GCCAAGCCTCCTCCTATCAA+TGG 0.517459 5_3:-8482419 None:intergenic
TCTAACATCAGATGCAGCCT+TGG 0.521701 5_3:+8481574 Msa0796430:CDS
CCCAATAGCAATCGGTGCAA+TGG 0.522337 5_3:-8482270 None:intergenic
GGCAATTTACTTGAAAACAA+AGG 0.531006 5_3:-8480513 None:intergenic
ATATGTCCATGGACGGTGCA+AGG 0.535026 5_3:+8480331 Msa0796430:five_prime_UTR
TGTATATGATTGTGAAAGGG+AGG 0.536341 5_3:-8480369 None:intergenic
GTTGGACCATTGATAGGAGG+AGG 0.537767 5_3:+8482413 Msa0796430:CDS
TTGCAGAGTGTTCCAACCCA+TGG 0.540788 5_3:+8482131 Msa0796430:intron
ATTTGCACTATTTGTTGGTG+TGG 0.541154 5_3:+8481634 Msa0796430:CDS
GCTGGGCCGAATGAGCGAGC+CGG 0.544156 5_3:-8482350 None:intergenic
CAGTGGAGGTTCAATGAACC+CGG 0.550196 5_3:+8482331 Msa0796430:CDS
CAGTCCAGCAGCCACTCCAT+GGG 0.550781 5_3:-8482147 None:intergenic
AAATGTATATGATTGTGAAA+GGG 0.558417 5_3:-8480372 None:intergenic
TACAATTTATTACAAGCAGC+GGG 0.560033 5_3:-8482632 None:intergenic
TGAACCTCCACTGAATGGAC+CGG 0.561117 5_3:-8482321 None:intergenic
CCAGCAGCCACTCCATGGGT+TGG 0.562685 5_3:-8482143 None:intergenic
TCCAATAGAAGAGACCAGTT+AGG 0.566741 5_3:-8481736 None:intergenic
TCGCTCATTCGGCCCAGCTG+TGG 0.568998 5_3:+8482355 Msa0796430:CDS
TAATGCTTGATTATAATGCT+AGG 0.569994 5_3:-8480297 None:intergenic
ACAACGAACCCAATAGCAAT+CGG 0.576808 5_3:-8482278 None:intergenic
GATAACTGGATCTATTGGGT+TGG 0.583637 5_3:+8482395 Msa0796430:CDS
CCTTAGCGGTGACATAATTG+AGG 0.583882 5_3:-8481796 None:intergenic
CCTCAATTATGTCACCGCTA+AGG 0.583887 5_3:+8481796 Msa0796430:CDS
TATGTCCATGGACGGTGCAA+GGG 0.584097 5_3:+8480332 Msa0796430:five_prime_UTR
TGAAATAAAGAAAAGGGTGA+GGG 0.584837 5_3:+8480261 Msa0796430:five_prime_UTR
GATGCAGCCTTGGATCCAGC+GGG 0.590239 5_3:+8481584 Msa0796430:CDS
TCTAACAACTCATATGTCCA+TGG 0.591289 5_3:+8480320 Msa0796430:five_prime_UTR
AATAAAGAAAAGGGTGAGGG+TGG 0.594742 5_3:+8480264 Msa0796430:five_prime_UTR
GCTACTGCCACTAAACCCGC+TGG 0.595890 5_3:-8481599 None:intergenic
GATGGTGATGTTGCCTCCAA+TGG 0.596576 5_3:-8481714 None:intergenic
ATAGAAGAGACCAGTTAGGA+TGG 0.597084 5_3:-8481732 None:intergenic
GGGTTTAGTGGCAGTAGCTG+TGG 0.598717 5_3:+8481604 Msa0796430:CDS
TTACAATTTATTACAAGCAG+CGG 0.603382 5_3:-8482633 None:intergenic
TGTTTCAGATGCTGGTGCTG+GGG 0.605971 5_3:-8482480 None:intergenic
TGGGTTGGACCATTGATAGG+AGG 0.606483 5_3:+8482410 Msa0796430:CDS
TTAGCCGCCGGTCCATTCAG+TGG 0.614841 5_3:+8482314 Msa0796430:CDS
TGGCAAAGAATTCTTATGCA+AGG 0.616445 5_3:+8480425 Msa0796430:five_prime_UTR
CTAATCCAAAAGTAACAGCT+GGG 0.617109 5_3:-8481691 None:intergenic
GCCGCCGGTCCATTCAGTGG+AGG 0.622801 5_3:+8482317 Msa0796430:CDS
GGAGCTAACATCTTAGCCGC+CGG 0.625071 5_3:+8482302 Msa0796430:CDS
AACTCTTCATATATATACCA+TGG 0.629426 5_3:+8480405 Msa0796430:five_prime_UTR
GAGGAGGAGACATGCAACGA+TGG 0.629914 5_3:-8481777 None:intergenic
GTATATGATTGTGAAAGGGA+GGG 0.633698 5_3:-8480368 None:intergenic
AGATGCAGCCTTGGATCCAG+CGG 0.648942 5_3:+8481583 Msa0796430:CDS
ACAACTCATATGTCCATGGA+CGG 0.650006 5_3:+8480324 Msa0796430:five_prime_UTR
ATAGCAGCAAACATCTCAGG+TGG 0.653320 5_3:+8481659 Msa0796430:CDS
AGTTTCCACTAACCACAGCT+GGG 0.662001 5_3:-8482367 None:intergenic
GAGTGTTCCAACCCATGGAG+TGG 0.667041 5_3:+8482136 Msa0796430:intron
TAGCGGTGACATAATTGAGG+AGG 0.669128 5_3:-8481793 None:intergenic
ACCTCCACTGAATGGACCGG+CGG 0.670839 5_3:-8482318 None:intergenic
TGATAGATAAGCCTTAAGGG+AGG 0.711676 5_3:-8480585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATATTAATATATTATGT+TGG + chr5_3:8482100-8482119 Msa0796430:intron 10.0%
!! CATATATTAATATATTATGT+TGG + chr5_3:8482100-8482119 Msa0796430:intron 10.0%
!! ACTTAAATAAATTGCAATAT+TGG + chr5_3:8481450-8481469 Msa0796430:intron 15.0%
!!! AAAGTACATTACATAATTTT+AGG + chr5_3:8481827-8481846 Msa0796430:intron 15.0%
!! TTCAATGATTTATTAATATG+TGG - chr5_3:8482054-8482073 None:intergenic 15.0%
!! ACTTAAATAAATTGCAATAT+TGG + chr5_3:8481450-8481469 Msa0796430:intron 15.0%
!!! AAAGTACATTACATAATTTT+AGG + chr5_3:8481827-8481846 Msa0796430:intron 15.0%
!! TTCAATGATTTATTAATATG+TGG - chr5_3:8482054-8482073 None:intergenic 15.0%
!! AAATGTATATGATTGTGAAA+GGG - chr5_3:8480375-8480394 None:intergenic 20.0%
!! AAAATGTATATGATTGTGAA+AGG - chr5_3:8480376-8480395 None:intergenic 20.0%
!! AAAATTATGCAAGAAATAAG+AGG + chr5_3:8480748-8480767 Msa0796430:intron 20.0%
!!! TCTATGAGATTTTCATAAAT+TGG - chr5_3:8480807-8480826 None:intergenic 20.0%
!! ACTTCAATAAATTGCAATAT+TGG + chr5_3:8481081-8481100 Msa0796430:intron 20.0%
!! AAATGTTTGACAAATGATAA+CGG + chr5_3:8480979-8480998 Msa0796430:intron 20.0%
!!! TTTGAGATTATCATAACATT+TGG + chr5_3:8482191-8482210 Msa0796430:CDS 20.0%
!! AAAGAAAAAACAAAACCAAA+AGG - chr5_3:8482580-8482599 None:intergenic 20.0%
!! AAATGTATATGATTGTGAAA+GGG - chr5_3:8480375-8480394 None:intergenic 20.0%
!! AAAATGTATATGATTGTGAA+AGG - chr5_3:8480376-8480395 None:intergenic 20.0%
!! AAAATTATGCAAGAAATAAG+AGG + chr5_3:8480748-8480767 Msa0796430:intron 20.0%
!!! TCTATGAGATTTTCATAAAT+TGG - chr5_3:8480807-8480826 None:intergenic 20.0%
!! ACTTCAATAAATTGCAATAT+TGG + chr5_3:8481081-8481100 Msa0796430:intron 20.0%
!! AAATGTTTGACAAATGATAA+CGG + chr5_3:8480979-8480998 Msa0796430:intron 20.0%
!!! TTTGAGATTATCATAACATT+TGG + chr5_3:8482191-8482210 Msa0796430:CDS 20.0%
!! AAAGAAAAAACAAAACCAAA+AGG - chr5_3:8482580-8482599 None:intergenic 20.0%
! TAATGCTTGATTATAATGCT+AGG - chr5_3:8480300-8480319 None:intergenic 25.0%
! AACTCTTCATATATATACCA+TGG + chr5_3:8480405-8480424 Msa0796430:five_prime_UTR 25.0%
! TAATTAACCGAAGACTAATT+AGG - chr5_3:8480486-8480505 None:intergenic 25.0%
!! TTTCAAGTAAATTGCCAAAA+TGG + chr5_3:8480520-8480539 Msa0796430:exon 25.0%
! AAATATAAGCTTACATCAGA+TGG + chr5_3:8481106-8481125 Msa0796430:intron 25.0%
! AAATATAAGCTTACATCAGA+TGG + chr5_3:8481106-8481125 Msa0796430:intron 25.0%
!! TACTTTTGAATATACCTTAG+CGG - chr5_3:8481813-8481832 None:intergenic 25.0%
!!! CATTACATAATTTTAGGTTC+AGG + chr5_3:8481833-8481852 Msa0796430:intron 25.0%
! GATTATCATAACATTTGGAT+TGG + chr5_3:8482196-8482215 Msa0796430:CDS 25.0%
! ATACCCTTAAAATTGAATCA+TGG + chr5_3:8482502-8482521 Msa0796430:exon 25.0%
!! CAACCATGATTCAATTTTAA+GGG - chr5_3:8482508-8482527 None:intergenic 25.0%
!! ACAACCATGATTCAATTTTA+AGG - chr5_3:8482509-8482528 None:intergenic 25.0%
! TAAAATTGAATCATGGTTGT+TGG + chr5_3:8482509-8482528 Msa0796430:exon 25.0%
! TTACAATTTATTACAAGCAG+CGG - chr5_3:8482636-8482655 None:intergenic 25.0%
! TAATGCTTGATTATAATGCT+AGG - chr5_3:8480300-8480319 None:intergenic 25.0%
! AACTCTTCATATATATACCA+TGG + chr5_3:8480405-8480424 Msa0796430:five_prime_UTR 25.0%
! TAATTAACCGAAGACTAATT+AGG - chr5_3:8480486-8480505 None:intergenic 25.0%
!! TTTCAAGTAAATTGCCAAAA+TGG + chr5_3:8480520-8480539 Msa0796430:exon 25.0%
! AAATATAAGCTTACATCAGA+TGG + chr5_3:8481106-8481125 Msa0796430:intron 25.0%
! AAATATAAGCTTACATCAGA+TGG + chr5_3:8481106-8481125 Msa0796430:intron 25.0%
!! TACTTTTGAATATACCTTAG+CGG - chr5_3:8481813-8481832 None:intergenic 25.0%
!!! CATTACATAATTTTAGGTTC+AGG + chr5_3:8481833-8481852 Msa0796430:intron 25.0%
! GATTATCATAACATTTGGAT+TGG + chr5_3:8482196-8482215 Msa0796430:CDS 25.0%
! ATACCCTTAAAATTGAATCA+TGG + chr5_3:8482502-8482521 Msa0796430:exon 25.0%
!! CAACCATGATTCAATTTTAA+GGG - chr5_3:8482508-8482527 None:intergenic 25.0%
!! ACAACCATGATTCAATTTTA+AGG - chr5_3:8482509-8482528 None:intergenic 25.0%
! TAAAATTGAATCATGGTTGT+TGG + chr5_3:8482509-8482528 Msa0796430:exon 25.0%
! TTACAATTTATTACAAGCAG+CGG - chr5_3:8482636-8482655 None:intergenic 25.0%
TTGAAATAAAGAAAAGGGTG+AGG + chr5_3:8480260-8480279 Msa0796430:five_prime_UTR 30.0%
TGAAATAAAGAAAAGGGTGA+GGG + chr5_3:8480261-8480280 Msa0796430:five_prime_UTR 30.0%
!! CAAAACACCTAATTAGTCTT+CGG + chr5_3:8480476-8480495 Msa0796430:five_prime_UTR 30.0%
GGCAATTTACTTGAAAACAA+AGG - chr5_3:8480516-8480535 None:intergenic 30.0%
! AAAACCTATCTTCACCATTT+TGG - chr5_3:8480537-8480556 None:intergenic 30.0%
! AAAATGGTGAAGATAGGTTT+TGG + chr5_3:8480536-8480555 Msa0796430:exon 30.0%
!! AATAAGCTTTGTAGTTCTAG+AGG + chr5_3:8480771-8480790 Msa0796430:intron 30.0%
TTACGTGAGACAAAATTTGA+AGG + chr5_3:8481027-8481046 Msa0796430:intron 30.0%
TGGTAACAATATTGGACTAT+TGG + chr5_3:8481130-8481149 Msa0796430:intron 30.0%
ACTATTGGTACAAATGTAGA+AGG + chr5_3:8481145-8481164 Msa0796430:intron 30.0%
TGGTAACAATATTGGACTAT+TGG + chr5_3:8481130-8481149 Msa0796430:intron 30.0%
ACTATTGGTACAAATGTAGA+AGG + chr5_3:8481145-8481164 Msa0796430:intron 30.0%
!!! TACATAATTTTAGGTTCAGG+TGG + chr5_3:8481836-8481855 Msa0796430:intron 30.0%
!!! GGTTGATGACAAATTGTTTT+GGG + chr5_3:8481870-8481889 Msa0796430:intron 30.0%
AAATTGTTTCAGTCGAGATT+TGG - chr5_3:8481906-8481925 None:intergenic 30.0%
!!! TTTCATCCTCCAGTTTTAAA+TGG - chr5_3:8481984-8482003 None:intergenic 30.0%
! ATTTATGGTGACGTCTTTAT+TGG + chr5_3:8482449-8482468 Msa0796430:CDS 30.0%
TGAACAAGTTTAAGCTTGAA+AGG - chr5_3:8482536-8482555 None:intergenic 30.0%
TACAATTTATTACAAGCAGC+GGG - chr5_3:8482635-8482654 None:intergenic 30.0%
TTGAAATAAAGAAAAGGGTG+AGG + chr5_3:8480260-8480279 Msa0796430:five_prime_UTR 30.0%
TGAAATAAAGAAAAGGGTGA+GGG + chr5_3:8480261-8480280 Msa0796430:five_prime_UTR 30.0%
!! CAAAACACCTAATTAGTCTT+CGG + chr5_3:8480476-8480495 Msa0796430:five_prime_UTR 30.0%
GGCAATTTACTTGAAAACAA+AGG - chr5_3:8480516-8480535 None:intergenic 30.0%
! AAAACCTATCTTCACCATTT+TGG - chr5_3:8480537-8480556 None:intergenic 30.0%
! AAAATGGTGAAGATAGGTTT+TGG + chr5_3:8480536-8480555 Msa0796430:exon 30.0%
!! AATAAGCTTTGTAGTTCTAG+AGG + chr5_3:8480771-8480790 Msa0796430:intron 30.0%
TTACGTGAGACAAAATTTGA+AGG + chr5_3:8481027-8481046 Msa0796430:intron 30.0%
TGGTAACAATATTGGACTAT+TGG + chr5_3:8481130-8481149 Msa0796430:intron 30.0%
ACTATTGGTACAAATGTAGA+AGG + chr5_3:8481145-8481164 Msa0796430:intron 30.0%
TGGTAACAATATTGGACTAT+TGG + chr5_3:8481130-8481149 Msa0796430:intron 30.0%
ACTATTGGTACAAATGTAGA+AGG + chr5_3:8481145-8481164 Msa0796430:intron 30.0%
!!! TACATAATTTTAGGTTCAGG+TGG + chr5_3:8481836-8481855 Msa0796430:intron 30.0%
!!! GGTTGATGACAAATTGTTTT+GGG + chr5_3:8481870-8481889 Msa0796430:intron 30.0%
AAATTGTTTCAGTCGAGATT+TGG - chr5_3:8481906-8481925 None:intergenic 30.0%
!!! TTTCATCCTCCAGTTTTAAA+TGG - chr5_3:8481984-8482003 None:intergenic 30.0%
! ATTTATGGTGACGTCTTTAT+TGG + chr5_3:8482449-8482468 Msa0796430:CDS 30.0%
TGAACAAGTTTAAGCTTGAA+AGG - chr5_3:8482536-8482555 None:intergenic 30.0%
TACAATTTATTACAAGCAGC+GGG - chr5_3:8482635-8482654 None:intergenic 30.0%
TCTAACAACTCATATGTCCA+TGG + chr5_3:8480320-8480339 Msa0796430:five_prime_UTR 35.0%
GTATATGATTGTGAAAGGGA+GGG - chr5_3:8480371-8480390 None:intergenic 35.0%
TGTATATGATTGTGAAAGGG+AGG - chr5_3:8480372-8480391 None:intergenic 35.0%
TGCATAAGAATTCTTTGCCA+TGG - chr5_3:8480425-8480444 None:intergenic 35.0%
TGGCAAAGAATTCTTATGCA+AGG + chr5_3:8480425-8480444 Msa0796430:five_prime_UTR 35.0%
ATTGCCAAAATGGTGAAGAT+AGG + chr5_3:8480530-8480549 Msa0796430:exon 35.0%
CTCTGATAGATAAGCCTTAA+GGG - chr5_3:8480591-8480610 None:intergenic 35.0%
ACTCTGATAGATAAGCCTTA+AGG - chr5_3:8480592-8480611 None:intergenic 35.0%
ATAAGCTTACATCAGATGGT+TGG + chr5_3:8481110-8481129 Msa0796430:intron 35.0%
!! CAGATGGTTGGTAACAATAT+TGG + chr5_3:8481122-8481141 Msa0796430:intron 35.0%
GTAGAAGGAATGATGAAATG+TGG + chr5_3:8481160-8481179 Msa0796430:intron 35.0%
ATAAGCTTACATCAGATGGT+TGG + chr5_3:8481110-8481129 Msa0796430:intron 35.0%
!! CAGATGGTTGGTAACAATAT+TGG + chr5_3:8481122-8481141 Msa0796430:intron 35.0%
GTAGAAGGAATGATGAAATG+TGG + chr5_3:8481160-8481179 Msa0796430:intron 35.0%
CATGCATTTGCACTATTTGT+TGG + chr5_3:8481629-8481648 Msa0796430:CDS 35.0%
! ATTTGCACTATTTGTTGGTG+TGG + chr5_3:8481634-8481653 Msa0796430:CDS 35.0%
CTAATCCAAAAGTAACAGCT+GGG - chr5_3:8481694-8481713 None:intergenic 35.0%
!!! GTTACTTTTGGATTAGCCAT+TGG + chr5_3:8481698-8481717 Msa0796430:CDS 35.0%
!!! TTTTAGGTTCAGGTGGTTAA+TGG + chr5_3:8481843-8481862 Msa0796430:intron 35.0%
!!! CGGTTGATGACAAATTGTTT+TGG + chr5_3:8481869-8481888 Msa0796430:intron 35.0%
TTAGTTGAACTCCTGAACAT+CGG + chr5_3:8481949-8481968 Msa0796430:intron 35.0%
!!! CTCCAGTTTTAAATGGAAAG+GGG - chr5_3:8481977-8481996 None:intergenic 35.0%
!!! CCTCCAGTTTTAAATGGAAA+GGG - chr5_3:8481978-8481997 None:intergenic 35.0%
!!! TCCTCCAGTTTTAAATGGAA+AGG - chr5_3:8481979-8481998 None:intergenic 35.0%
CAAACACTAATCCAGCAATA+GGG - chr5_3:8482175-8482194 None:intergenic 35.0%
TCAAACACTAATCCAGCAAT+AGG - chr5_3:8482176-8482195 None:intergenic 35.0%
TTGCTGATAACTGGATCTAT+TGG + chr5_3:8482390-8482409 Msa0796430:CDS 35.0%
TGCTGATAACTGGATCTATT+GGG + chr5_3:8482391-8482410 Msa0796430:CDS 35.0%
TCTAACAACTCATATGTCCA+TGG + chr5_3:8480320-8480339 Msa0796430:five_prime_UTR 35.0%
GTATATGATTGTGAAAGGGA+GGG - chr5_3:8480371-8480390 None:intergenic 35.0%
TGTATATGATTGTGAAAGGG+AGG - chr5_3:8480372-8480391 None:intergenic 35.0%
TGCATAAGAATTCTTTGCCA+TGG - chr5_3:8480425-8480444 None:intergenic 35.0%
TGGCAAAGAATTCTTATGCA+AGG + chr5_3:8480425-8480444 Msa0796430:five_prime_UTR 35.0%
ATTGCCAAAATGGTGAAGAT+AGG + chr5_3:8480530-8480549 Msa0796430:exon 35.0%
CTCTGATAGATAAGCCTTAA+GGG - chr5_3:8480591-8480610 None:intergenic 35.0%
ACTCTGATAGATAAGCCTTA+AGG - chr5_3:8480592-8480611 None:intergenic 35.0%
ATAAGCTTACATCAGATGGT+TGG + chr5_3:8481110-8481129 Msa0796430:intron 35.0%
!! CAGATGGTTGGTAACAATAT+TGG + chr5_3:8481122-8481141 Msa0796430:intron 35.0%
GTAGAAGGAATGATGAAATG+TGG + chr5_3:8481160-8481179 Msa0796430:intron 35.0%
ATAAGCTTACATCAGATGGT+TGG + chr5_3:8481110-8481129 Msa0796430:intron 35.0%
!! CAGATGGTTGGTAACAATAT+TGG + chr5_3:8481122-8481141 Msa0796430:intron 35.0%
GTAGAAGGAATGATGAAATG+TGG + chr5_3:8481160-8481179 Msa0796430:intron 35.0%
CATGCATTTGCACTATTTGT+TGG + chr5_3:8481629-8481648 Msa0796430:CDS 35.0%
! ATTTGCACTATTTGTTGGTG+TGG + chr5_3:8481634-8481653 Msa0796430:CDS 35.0%
CTAATCCAAAAGTAACAGCT+GGG - chr5_3:8481694-8481713 None:intergenic 35.0%
!!! GTTACTTTTGGATTAGCCAT+TGG + chr5_3:8481698-8481717 Msa0796430:CDS 35.0%
!!! TTTTAGGTTCAGGTGGTTAA+TGG + chr5_3:8481843-8481862 Msa0796430:intron 35.0%
!!! CGGTTGATGACAAATTGTTT+TGG + chr5_3:8481869-8481888 Msa0796430:intron 35.0%
TTAGTTGAACTCCTGAACAT+CGG + chr5_3:8481949-8481968 Msa0796430:intron 35.0%
!!! CTCCAGTTTTAAATGGAAAG+GGG - chr5_3:8481977-8481996 None:intergenic 35.0%
!!! CCTCCAGTTTTAAATGGAAA+GGG - chr5_3:8481978-8481997 None:intergenic 35.0%
!!! TCCTCCAGTTTTAAATGGAA+AGG - chr5_3:8481979-8481998 None:intergenic 35.0%
CAAACACTAATCCAGCAATA+GGG - chr5_3:8482175-8482194 None:intergenic 35.0%
TCAAACACTAATCCAGCAAT+AGG - chr5_3:8482176-8482195 None:intergenic 35.0%
TTGCTGATAACTGGATCTAT+TGG + chr5_3:8482390-8482409 Msa0796430:CDS 35.0%
TGCTGATAACTGGATCTATT+GGG + chr5_3:8482391-8482410 Msa0796430:CDS 35.0%
AATAAAGAAAAGGGTGAGGG+TGG + chr5_3:8480264-8480283 Msa0796430:five_prime_UTR 40.0%
ACAACTCATATGTCCATGGA+CGG + chr5_3:8480324-8480343 Msa0796430:five_prime_UTR 40.0%
! TTTTAGCATTGCCTCCCTTA+AGG + chr5_3:8480574-8480593 Msa0796430:CDS 40.0%
TGATAGATAAGCCTTAAGGG+AGG - chr5_3:8480588-8480607 None:intergenic 40.0%
AGCGAACACAAAAATCAGAG+TGG - chr5_3:8480621-8480640 None:intergenic 40.0%
! ACTCTGATTTTTGTGTTCGC+TGG + chr5_3:8480620-8480639 Msa0796430:CDS 40.0%
! ATTTTTGTGTTCGCTGGAGT+TGG + chr5_3:8480626-8480645 Msa0796430:CDS 40.0%
AGACGTGACATAAATGAGGT+TGG - chr5_3:8481305-8481324 None:intergenic 40.0%
! TCTGAGACGTGACATAAATG+AGG - chr5_3:8481309-8481328 None:intergenic 40.0%
!!! TTGAACCCAGCTGTTACTTT+TGG + chr5_3:8481686-8481705 Msa0796430:CDS 40.0%
GCTAATCCAAAAGTAACAGC+TGG - chr5_3:8481695-8481714 None:intergenic 40.0%
!!! ACTTTTGGATTAGCCATTGG+AGG + chr5_3:8481701-8481720 Msa0796430:CDS 40.0%
ATAGAAGAGACCAGTTAGGA+TGG - chr5_3:8481735-8481754 None:intergenic 40.0%
! TCCTAACTGGTCTCTTCTAT+TGG + chr5_3:8481735-8481754 Msa0796430:CDS 40.0%
TCCAATAGAAGAGACCAGTT+AGG - chr5_3:8481739-8481758 None:intergenic 40.0%
TATTGGATTGCCCAATTGCT+TGG + chr5_3:8481752-8481771 Msa0796430:CDS 40.0%
GTTCAGGTGGTTAATGGTTT+CGG + chr5_3:8481849-8481868 Msa0796430:intron 40.0%
TAGTTGAACTCCTGAACATC+GGG + chr5_3:8481950-8481969 Msa0796430:intron 40.0%
! GACCCCTTTCCATTTAAAAC+TGG + chr5_3:8481972-8481991 Msa0796430:intron 40.0%
! CCCTTTCCATTTAAAACTGG+AGG + chr5_3:8481975-8481994 Msa0796430:intron 40.0%
! TTCCAATTGAGCCCTTTTTG+GGG - chr5_3:8482250-8482269 None:intergenic 40.0%
! GTTCCAATTGAGCCCTTTTT+GGG - chr5_3:8482251-8482270 None:intergenic 40.0%
ACAACGAACCCAATAGCAAT+CGG - chr5_3:8482281-8482300 None:intergenic 40.0%
! ATTGCTATTGGGTTCGTTGT+CGG + chr5_3:8482281-8482300 Msa0796430:CDS 40.0%
TTCATTGAACCTCCACTGAA+TGG - chr5_3:8482329-8482348 None:intergenic 40.0%
GTGGAAACTTTGCTGATAAC+TGG + chr5_3:8482381-8482400 Msa0796430:CDS 40.0%
GATAACTGGATCTATTGGGT+TGG + chr5_3:8482395-8482414 Msa0796430:CDS 40.0%
!! TATTGGGTTGGACCATTGAT+AGG + chr5_3:8482407-8482426 Msa0796430:CDS 40.0%
! TAAGGGTATGTTTCAGATGC+TGG - chr5_3:8482491-8482510 None:intergenic 40.0%
AATAAAGAAAAGGGTGAGGG+TGG + chr5_3:8480264-8480283 Msa0796430:five_prime_UTR 40.0%
ACAACTCATATGTCCATGGA+CGG + chr5_3:8480324-8480343 Msa0796430:five_prime_UTR 40.0%
! TTTTAGCATTGCCTCCCTTA+AGG + chr5_3:8480574-8480593 Msa0796430:CDS 40.0%
TGATAGATAAGCCTTAAGGG+AGG - chr5_3:8480588-8480607 None:intergenic 40.0%
AGCGAACACAAAAATCAGAG+TGG - chr5_3:8480621-8480640 None:intergenic 40.0%
! ACTCTGATTTTTGTGTTCGC+TGG + chr5_3:8480620-8480639 Msa0796430:CDS 40.0%
! ATTTTTGTGTTCGCTGGAGT+TGG + chr5_3:8480626-8480645 Msa0796430:CDS 40.0%
AGACGTGACATAAATGAGGT+TGG - chr5_3:8481305-8481324 None:intergenic 40.0%
! TCTGAGACGTGACATAAATG+AGG - chr5_3:8481309-8481328 None:intergenic 40.0%
!!! TTGAACCCAGCTGTTACTTT+TGG + chr5_3:8481686-8481705 Msa0796430:CDS 40.0%
GCTAATCCAAAAGTAACAGC+TGG - chr5_3:8481695-8481714 None:intergenic 40.0%
!!! ACTTTTGGATTAGCCATTGG+AGG + chr5_3:8481701-8481720 Msa0796430:CDS 40.0%
ATAGAAGAGACCAGTTAGGA+TGG - chr5_3:8481735-8481754 None:intergenic 40.0%
! TCCTAACTGGTCTCTTCTAT+TGG + chr5_3:8481735-8481754 Msa0796430:CDS 40.0%
TCCAATAGAAGAGACCAGTT+AGG - chr5_3:8481739-8481758 None:intergenic 40.0%
TATTGGATTGCCCAATTGCT+TGG + chr5_3:8481752-8481771 Msa0796430:CDS 40.0%
GTTCAGGTGGTTAATGGTTT+CGG + chr5_3:8481849-8481868 Msa0796430:intron 40.0%
TAGTTGAACTCCTGAACATC+GGG + chr5_3:8481950-8481969 Msa0796430:intron 40.0%
! GACCCCTTTCCATTTAAAAC+TGG + chr5_3:8481972-8481991 Msa0796430:intron 40.0%
! CCCTTTCCATTTAAAACTGG+AGG + chr5_3:8481975-8481994 Msa0796430:intron 40.0%
! TTCCAATTGAGCCCTTTTTG+GGG - chr5_3:8482250-8482269 None:intergenic 40.0%
! GTTCCAATTGAGCCCTTTTT+GGG - chr5_3:8482251-8482270 None:intergenic 40.0%
ACAACGAACCCAATAGCAAT+CGG - chr5_3:8482281-8482300 None:intergenic 40.0%
! ATTGCTATTGGGTTCGTTGT+CGG + chr5_3:8482281-8482300 Msa0796430:CDS 40.0%
TTCATTGAACCTCCACTGAA+TGG - chr5_3:8482329-8482348 None:intergenic 40.0%
GTGGAAACTTTGCTGATAAC+TGG + chr5_3:8482381-8482400 Msa0796430:CDS 40.0%
GATAACTGGATCTATTGGGT+TGG + chr5_3:8482395-8482414 Msa0796430:CDS 40.0%
!! TATTGGGTTGGACCATTGAT+AGG + chr5_3:8482407-8482426 Msa0796430:CDS 40.0%
! TAAGGGTATGTTTCAGATGC+TGG - chr5_3:8482491-8482510 None:intergenic 40.0%
GTTGGTCACTTATCATACGC+AGG - chr5_3:8480918-8480937 None:intergenic 45.0%
AGACGTGGCATAAATGAGGT+TGG - chr5_3:8480936-8480955 None:intergenic 45.0%
! TCTGAGACGTGGCATAAATG+AGG - chr5_3:8480940-8480959 None:intergenic 45.0%
! AAACACACATGTCTGAGACG+TGG - chr5_3:8480951-8480970 None:intergenic 45.0%
TCTAACATCAGATGCAGCCT+TGG + chr5_3:8481574-8481593 Msa0796430:CDS 45.0%
! ACCTGAGATGTTTGCTGCTA+TGG - chr5_3:8481660-8481679 None:intergenic 45.0%
ATAGCAGCAAACATCTCAGG+TGG + chr5_3:8481659-8481678 Msa0796430:CDS 45.0%
AACGATGGAGCCAAGCAATT+GGG - chr5_3:8481765-8481784 None:intergenic 45.0%
TAGCGGTGACATAATTGAGG+AGG - chr5_3:8481796-8481815 None:intergenic 45.0%
CCTTAGCGGTGACATAATTG+AGG - chr5_3:8481799-8481818 None:intergenic 45.0%
CCTCAATTATGTCACCGCTA+AGG + chr5_3:8481796-8481815 Msa0796430:CDS 45.0%
!!! AAATTGTTTTGGGAAGCCCG+AGG + chr5_3:8481880-8481899 Msa0796430:intron 45.0%
TTTCAGTCGAGATTTGGCCT+CGG - chr5_3:8481900-8481919 None:intergenic 45.0%
! GGTTCCAATTGAGCCCTTTT+TGG - chr5_3:8482252-8482271 None:intergenic 45.0%
!! ACCATTGCACCGATTGCTAT+TGG + chr5_3:8482269-8482288 Msa0796430:CDS 45.0%
!! CCATTGCACCGATTGCTATT+GGG + chr5_3:8482270-8482289 Msa0796430:CDS 45.0%
AGTTTCCACTAACCACAGCT+GGG - chr5_3:8482370-8482389 None:intergenic 45.0%
AAGTTTCCACTAACCACAGC+TGG - chr5_3:8482371-8482390 None:intergenic 45.0%
ATGTTTCAGATGCTGGTGCT+GGG - chr5_3:8482484-8482503 None:intergenic 45.0%
TATGTTTCAGATGCTGGTGC+TGG - chr5_3:8482485-8482504 None:intergenic 45.0%
!!! GCTTGCTGTCATGAACCTTT+TGG + chr5_3:8482562-8482581 Msa0796430:three_prime_UTR 45.0%
GTTGGTCACTTATCATACGC+AGG - chr5_3:8480918-8480937 None:intergenic 45.0%
AGACGTGGCATAAATGAGGT+TGG - chr5_3:8480936-8480955 None:intergenic 45.0%
! TCTGAGACGTGGCATAAATG+AGG - chr5_3:8480940-8480959 None:intergenic 45.0%
! AAACACACATGTCTGAGACG+TGG - chr5_3:8480951-8480970 None:intergenic 45.0%
TCTAACATCAGATGCAGCCT+TGG + chr5_3:8481574-8481593 Msa0796430:CDS 45.0%
! ACCTGAGATGTTTGCTGCTA+TGG - chr5_3:8481660-8481679 None:intergenic 45.0%
ATAGCAGCAAACATCTCAGG+TGG + chr5_3:8481659-8481678 Msa0796430:CDS 45.0%
AACGATGGAGCCAAGCAATT+GGG - chr5_3:8481765-8481784 None:intergenic 45.0%
TAGCGGTGACATAATTGAGG+AGG - chr5_3:8481796-8481815 None:intergenic 45.0%
CCTTAGCGGTGACATAATTG+AGG - chr5_3:8481799-8481818 None:intergenic 45.0%
CCTCAATTATGTCACCGCTA+AGG + chr5_3:8481796-8481815 Msa0796430:CDS 45.0%
!!! AAATTGTTTTGGGAAGCCCG+AGG + chr5_3:8481880-8481899 Msa0796430:intron 45.0%
TTTCAGTCGAGATTTGGCCT+CGG - chr5_3:8481900-8481919 None:intergenic 45.0%
! GGTTCCAATTGAGCCCTTTT+TGG - chr5_3:8482252-8482271 None:intergenic 45.0%
!! ACCATTGCACCGATTGCTAT+TGG + chr5_3:8482269-8482288 Msa0796430:CDS 45.0%
!! CCATTGCACCGATTGCTATT+GGG + chr5_3:8482270-8482289 Msa0796430:CDS 45.0%
AGTTTCCACTAACCACAGCT+GGG - chr5_3:8482370-8482389 None:intergenic 45.0%
AAGTTTCCACTAACCACAGC+TGG - chr5_3:8482371-8482390 None:intergenic 45.0%
ATGTTTCAGATGCTGGTGCT+GGG - chr5_3:8482484-8482503 None:intergenic 45.0%
TATGTTTCAGATGCTGGTGC+TGG - chr5_3:8482485-8482504 None:intergenic 45.0%
!!! GCTTGCTGTCATGAACCTTT+TGG + chr5_3:8482562-8482581 Msa0796430:three_prime_UTR 45.0%
! AAGGGTGAGGGTGGTTAGTT+AGG + chr5_3:8480273-8480292 Msa0796430:five_prime_UTR 50.0%
ATATGTCCATGGACGGTGCA+AGG + chr5_3:8480331-8480350 Msa0796430:five_prime_UTR 50.0%
TATGTCCATGGACGGTGCAA+GGG + chr5_3:8480332-8480351 Msa0796430:five_prime_UTR 50.0%
GCCATAGCAGCAAACATCTC+AGG + chr5_3:8481656-8481675 Msa0796430:CDS 50.0%
! GATGGTGATGTTGCCTCCAA+TGG - chr5_3:8481717-8481736 None:intergenic 50.0%
GGCAACATCACCATCCTAAC+TGG + chr5_3:8481722-8481741 Msa0796430:CDS 50.0%
CAACGATGGAGCCAAGCAAT+TGG - chr5_3:8481766-8481785 None:intergenic 50.0%
TTCAGTCGAGATTTGGCCTC+GGG - chr5_3:8481899-8481918 None:intergenic 50.0%
! TTGCAGAGTGTTCCAACCCA+TGG + chr5_3:8482131-8482150 Msa0796430:intron 50.0%
ACAGCAGCTGACCCCAAAAA+GGG + chr5_3:8482236-8482255 Msa0796430:CDS 50.0%
GACCCCAAAAAGGGCTCAAT+TGG + chr5_3:8482245-8482264 Msa0796430:CDS 50.0%
CCCAATAGCAATCGGTGCAA+TGG - chr5_3:8482273-8482292 None:intergenic 50.0%
TGAACCTCCACTGAATGGAC+CGG - chr5_3:8482324-8482343 None:intergenic 50.0%
CAGTGGAGGTTCAATGAACC+CGG + chr5_3:8482331-8482350 Msa0796430:CDS 50.0%
! TGGGTTGGACCATTGATAGG+AGG + chr5_3:8482410-8482429 Msa0796430:CDS 50.0%
GTTGGACCATTGATAGGAGG+AGG + chr5_3:8482413-8482432 Msa0796430:CDS 50.0%
ACCATTGATAGGAGGAGGCT+TGG + chr5_3:8482418-8482437 Msa0796430:CDS 50.0%
!! GGCTTGGCTGGGTTGATTTA+TGG + chr5_3:8482434-8482453 Msa0796430:CDS 50.0%
! TGTTTCAGATGCTGGTGCTG+GGG - chr5_3:8482483-8482502 None:intergenic 50.0%
! AAGGGTGAGGGTGGTTAGTT+AGG + chr5_3:8480273-8480292 Msa0796430:five_prime_UTR 50.0%
ATATGTCCATGGACGGTGCA+AGG + chr5_3:8480331-8480350 Msa0796430:five_prime_UTR 50.0%
TATGTCCATGGACGGTGCAA+GGG + chr5_3:8480332-8480351 Msa0796430:five_prime_UTR 50.0%
GCCATAGCAGCAAACATCTC+AGG + chr5_3:8481656-8481675 Msa0796430:CDS 50.0%
! GATGGTGATGTTGCCTCCAA+TGG - chr5_3:8481717-8481736 None:intergenic 50.0%
GGCAACATCACCATCCTAAC+TGG + chr5_3:8481722-8481741 Msa0796430:CDS 50.0%
CAACGATGGAGCCAAGCAAT+TGG - chr5_3:8481766-8481785 None:intergenic 50.0%
TTCAGTCGAGATTTGGCCTC+GGG - chr5_3:8481899-8481918 None:intergenic 50.0%
! TTGCAGAGTGTTCCAACCCA+TGG + chr5_3:8482131-8482150 Msa0796430:intron 50.0%
ACAGCAGCTGACCCCAAAAA+GGG + chr5_3:8482236-8482255 Msa0796430:CDS 50.0%
GACCCCAAAAAGGGCTCAAT+TGG + chr5_3:8482245-8482264 Msa0796430:CDS 50.0%
CCCAATAGCAATCGGTGCAA+TGG - chr5_3:8482273-8482292 None:intergenic 50.0%
TGAACCTCCACTGAATGGAC+CGG - chr5_3:8482324-8482343 None:intergenic 50.0%
CAGTGGAGGTTCAATGAACC+CGG + chr5_3:8482331-8482350 Msa0796430:CDS 50.0%
! TGGGTTGGACCATTGATAGG+AGG + chr5_3:8482410-8482429 Msa0796430:CDS 50.0%
GTTGGACCATTGATAGGAGG+AGG + chr5_3:8482413-8482432 Msa0796430:CDS 50.0%
ACCATTGATAGGAGGAGGCT+TGG + chr5_3:8482418-8482437 Msa0796430:CDS 50.0%
!! GGCTTGGCTGGGTTGATTTA+TGG + chr5_3:8482434-8482453 Msa0796430:CDS 50.0%
! TGTTTCAGATGCTGGTGCTG+GGG - chr5_3:8482483-8482502 None:intergenic 50.0%
AGATGCAGCCTTGGATCCAG+CGG + chr5_3:8481583-8481602 Msa0796430:CDS 55.0%
CACTAAACCCGCTGGATCCA+AGG - chr5_3:8481594-8481613 None:intergenic 55.0%
! CTTGGATCCAGCGGGTTTAG+TGG + chr5_3:8481592-8481611 Msa0796430:CDS 55.0%
GGGTTTAGTGGCAGTAGCTG+TGG + chr5_3:8481604-8481623 Msa0796430:CDS 55.0%
GAGGAGGAGACATGCAACGA+TGG - chr5_3:8481780-8481799 None:intergenic 55.0%
GAGTGTTCCAACCCATGGAG+TGG + chr5_3:8482136-8482155 Msa0796430:intron 55.0%
GCTGGACTGAACCCTATTGC+TGG + chr5_3:8482161-8482180 Msa0796430:CDS 55.0%
!!! CTTTTTGGGGTCAGCTGCTG+TGG - chr5_3:8482237-8482256 None:intergenic 55.0%
CACAGCAGCTGACCCCAAAA+AGG + chr5_3:8482235-8482254 Msa0796430:CDS 55.0%
GGAGCTAACATCTTAGCCGC+CGG + chr5_3:8482302-8482321 Msa0796430:CDS 55.0%
! ATGAACCCGGCTCGCTCATT+CGG + chr5_3:8482344-8482363 Msa0796430:CDS 55.0%
GCCAAGCCTCCTCCTATCAA+TGG - chr5_3:8482422-8482441 None:intergenic 55.0%
TTGATAGGAGGAGGCTTGGC+TGG + chr5_3:8482422-8482441 Msa0796430:CDS 55.0%
TGATAGGAGGAGGCTTGGCT+GGG + chr5_3:8482423-8482442 Msa0796430:CDS 55.0%
AGATGCAGCCTTGGATCCAG+CGG + chr5_3:8481583-8481602 Msa0796430:CDS 55.0%
CACTAAACCCGCTGGATCCA+AGG - chr5_3:8481594-8481613 None:intergenic 55.0%
! CTTGGATCCAGCGGGTTTAG+TGG + chr5_3:8481592-8481611 Msa0796430:CDS 55.0%
GGGTTTAGTGGCAGTAGCTG+TGG + chr5_3:8481604-8481623 Msa0796430:CDS 55.0%
GAGGAGGAGACATGCAACGA+TGG - chr5_3:8481780-8481799 None:intergenic 55.0%
GAGTGTTCCAACCCATGGAG+TGG + chr5_3:8482136-8482155 Msa0796430:intron 55.0%
GCTGGACTGAACCCTATTGC+TGG + chr5_3:8482161-8482180 Msa0796430:CDS 55.0%
!!! CTTTTTGGGGTCAGCTGCTG+TGG - chr5_3:8482237-8482256 None:intergenic 55.0%
CACAGCAGCTGACCCCAAAA+AGG + chr5_3:8482235-8482254 Msa0796430:CDS 55.0%
GGAGCTAACATCTTAGCCGC+CGG + chr5_3:8482302-8482321 Msa0796430:CDS 55.0%
! ATGAACCCGGCTCGCTCATT+CGG + chr5_3:8482344-8482363 Msa0796430:CDS 55.0%
GCCAAGCCTCCTCCTATCAA+TGG - chr5_3:8482422-8482441 None:intergenic 55.0%
TTGATAGGAGGAGGCTTGGC+TGG + chr5_3:8482422-8482441 Msa0796430:CDS 55.0%
TGATAGGAGGAGGCTTGGCT+GGG + chr5_3:8482423-8482442 Msa0796430:CDS 55.0%
TGTTGCCCTTGCACCGTCCA+TGG - chr5_3:8480340-8480359 None:intergenic 60.0%
GATGCAGCCTTGGATCCAGC+GGG + chr5_3:8481584-8481603 Msa0796430:CDS 60.0%
GCTACTGCCACTAAACCCGC+TGG - chr5_3:8481602-8481621 None:intergenic 60.0%
GGAAAGGGGTCCCGATGTTC+AGG - chr5_3:8481963-8481982 None:intergenic 60.0%
CAGTCCAGCAGCCACTCCAT+GGG - chr5_3:8482150-8482169 None:intergenic 60.0%
TCAGTCCAGCAGCCACTCCA+TGG - chr5_3:8482151-8482170 None:intergenic 60.0%
TTAGCCGCCGGTCCATTCAG+TGG + chr5_3:8482314-8482333 Msa0796430:CDS 60.0%
ACCTCCACTGAATGGACCGG+CGG - chr5_3:8482321-8482340 None:intergenic 60.0%
TTCGGCCCAGCTGTGGTTAG+TGG + chr5_3:8482362-8482381 Msa0796430:CDS 60.0%
TGTTGCCCTTGCACCGTCCA+TGG - chr5_3:8480340-8480359 None:intergenic 60.0%
GATGCAGCCTTGGATCCAGC+GGG + chr5_3:8481584-8481603 Msa0796430:CDS 60.0%
GCTACTGCCACTAAACCCGC+TGG - chr5_3:8481602-8481621 None:intergenic 60.0%
GGAAAGGGGTCCCGATGTTC+AGG - chr5_3:8481963-8481982 None:intergenic 60.0%
CAGTCCAGCAGCCACTCCAT+GGG - chr5_3:8482150-8482169 None:intergenic 60.0%
TCAGTCCAGCAGCCACTCCA+TGG - chr5_3:8482151-8482170 None:intergenic 60.0%
TTAGCCGCCGGTCCATTCAG+TGG + chr5_3:8482314-8482333 Msa0796430:CDS 60.0%
ACCTCCACTGAATGGACCGG+CGG - chr5_3:8482321-8482340 None:intergenic 60.0%
TTCGGCCCAGCTGTGGTTAG+TGG + chr5_3:8482362-8482381 Msa0796430:CDS 60.0%
CCAGCAGCCACTCCATGGGT+TGG - chr5_3:8482146-8482165 None:intergenic 65.0%
CCAACCCATGGAGTGGCTGC+TGG + chr5_3:8482143-8482162 Msa0796430:CDS 65.0%
TCGCTCATTCGGCCCAGCTG+TGG + chr5_3:8482355-8482374 Msa0796430:CDS 65.0%
CCAGCAGCCACTCCATGGGT+TGG - chr5_3:8482146-8482165 None:intergenic 65.0%
CCAACCCATGGAGTGGCTGC+TGG + chr5_3:8482143-8482162 Msa0796430:CDS 65.0%
TCGCTCATTCGGCCCAGCTG+TGG + chr5_3:8482355-8482374 Msa0796430:CDS 65.0%
GCCGCCGGTCCATTCAGTGG+AGG + chr5_3:8482317-8482336 Msa0796430:CDS 70.0%
CTGGGCCGAATGAGCGAGCC+GGG - chr5_3:8482352-8482371 None:intergenic 70.0%
GCTGGGCCGAATGAGCGAGC+CGG - chr5_3:8482353-8482372 None:intergenic 70.0%
GCCGCCGGTCCATTCAGTGG+AGG + chr5_3:8482317-8482336 Msa0796430:CDS 70.0%
CTGGGCCGAATGAGCGAGCC+GGG - chr5_3:8482352-8482371 None:intergenic 70.0%
GCTGGGCCGAATGAGCGAGC+CGG - chr5_3:8482353-8482372 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8480260 8482662 8480260 ID=Msa0796430;Name=Msa0796430
chr5_3 mRNA 8480260 8482662 8480260 ID=Msa0796430-mRNA-1;Parent=Msa0796430;Name=Msa0796430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=279|1|1|1|1|1|3|151|249
chr5_3 exon 8480260 8480665 8480260 ID=Msa0796430-mRNA-1:exon:3485;Parent=Msa0796430-mRNA-1
chr5_3 exon 8481570 8481817 8481570 ID=Msa0796430-mRNA-1:exon:3486;Parent=Msa0796430-mRNA-1
chr5_3 exon 8482137 8482662 8482137 ID=Msa0796430-mRNA-1:exon:3487;Parent=Msa0796430-mRNA-1
chr5_3 five_prime_UTR 8480260 8480538 8480260 ID=Msa0796430-mRNA-1:five_prime_utr;Parent=Msa0796430-mRNA-1
chr5_3 CDS 8480539 8480665 8480539 ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3 CDS 8481570 8481817 8481570 ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3 CDS 8482137 8482511 8482137 ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3 three_prime_UTR 8482512 8482662 8482512 ID=Msa0796430-mRNA-1:three_prime_utr;Parent=Msa0796430-mRNA-1
Gene Sequence

>Msa0796430

ATGGTGAAGATAGGTTTTGGTACATTTGATGACTCTTTTAGCATTGCCTCCCTTAAGGCTTATCTATCAGAGTTCATTGCCACTCTGATTTTTGTGTTCGCTGGAGTTGGATCAGCAATTGCTTACAATGATCTAACATCAGATGCAGCCTTGGATCCAGCGGGTTTAGTGGCAGTAGCTGTGGCTCATGCATTTGCACTATTTGTTGGTGTGGCCATAGCAGCAAACATCTCAGGTGGACATTTGAACCCAGCTGTTACTTTTGGATTAGCCATTGGAGGCAACATCACCATCCTAACTGGTCTCTTCTATTGGATTGCCCAATTGCTTGGCTCCATCGTTGCATGTCTCCTCCTCAATTATGTCACCGCTAAGAGTGTTCCAACCCATGGAGTGGCTGCTGGACTGAACCCTATTGCTGGATTAGTGTTTGAGATTATCATAACATTTGGATTGGTTTACACTGTTTATGCCACAGCAGCTGACCCCAAAAAGGGCTCAATTGGAACCATTGCACCGATTGCTATTGGGTTCGTTGTCGGAGCTAACATCTTAGCCGCCGGTCCATTCAGTGGAGGTTCAATGAACCCGGCTCGCTCATTCGGCCCAGCTGTGGTTAGTGGAAACTTTGCTGATAACTGGATCTATTGGGTTGGACCATTGATAGGAGGAGGCTTGGCTGGGTTGATTTATGGTGACGTCTTTATTGGTTCATATTCCCCAGCACCAGCATCTGAAACATACCCTTAA
Protein sequence

>Msa0796430

MVKIGFGTFDDSFSIASLKAYLSEFIATLIFVFAGVGSAIAYNDLTSDAALDPAGLVAVAVAHAFALFVGVAIAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLNYVTAKSVPTHGVAAGLNPIAGLVFEIIITFGLVYTVYATAADPKKGSIGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYSPAPASETYP*