AlfalfaGEDB | Msa0796430

M. sativa cultivar zhongmu-4 / Msa0796430

KEGG: K09873
GO: GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805
PFAM: PF00230.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796430	XP_003611325.1	98.780	246	3	0	1	246	1	246	6.01e-163	461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796430	sp\|Q9FGL2\|TIP23_ARATH	79.757	247	49	1	1	246	1	247	2.95e-136	386

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796430	G7JXC6	98.780	246	3	0	1	246	1	246	2.87e-163	461

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005350	Msa0796430	-0.810569	1.079691e-50	-8.615850e-47
Msa0006700	Msa0796430	-0.831470	1.639542e-55	-8.615850e-47
Msa0012820	Msa0796430	0.826330	2.877814e-54	-8.615850e-47
Msa0020630	Msa0796430	-0.818328	2.076186e-52	-8.615850e-47
Msa0034310	Msa0796430	0.823812	1.132171e-53	-8.615850e-47
Msa0036230	Msa0796430	0.818953	1.497781e-52	-8.615850e-47
Msa0038310	Msa0796430	-0.802146	6.441833e-49	-8.615850e-47
Msa0043940	Msa0796430	-0.807843	4.147164e-50	-8.615850e-47
Msa0048950	Msa0796430	0.820775	5.739718e-53	-8.615850e-47
Msa0049400	Msa0796430	0.802234	6.180933e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796430	MtrunA17_Chr5g0399341	98.780	246	3	0	1	246	1	246	5.53e-167	461
Msa0796430	MtrunA17_Chr8g0340161	78.313	249	52	2	1	248	1	248	1.68e-131	371
Msa0796430	MtrunA17_Chr2g0331261	76.230	244	57	1	4	246	5	248	1.60e-124	353
Msa0796430	MtrunA17_Chr4g0030861	62.832	226	81	2	24	246	26	251	1.92e-91	270
Msa0796430	MtrunA17_Chr7g0264961	62.449	245	91	1	3	246	5	249	4.81e-90	266
Msa0796430	MtrunA17_Chr1g0212671	55.061	247	108	2	3	247	5	250	1.26e-89	265
Msa0796430	MtrunA17_Chr1g0146161	54.812	239	103	3	1	238	1	235	2.70e-83	249
Msa0796430	MtrunA17_Chr7g0222791	54.878	246	110	1	3	247	5	250	9.28e-80	240
Msa0796430	MtrunA17_Chr1g0188771	50.833	240	117	1	3	241	5	244	1.21e-78	237
Msa0796430	MtrunA17_Chr1g0146171	52.610	249	110	5	1	246	1	244	1.24e-78	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796430	AT5G47450.1	79.757	247	49	1	1	246	1	247	3.00e-137	386
Msa0796430	AT4G17340.1	82.800	250	42	1	1	249	1	250	1.43e-133	377
Msa0796430	AT3G16240.1	76.639	244	56	1	1	243	1	244	1.74e-129	366
Msa0796430	AT3G26520.1	64.069	231	82	1	7	236	10	240	6.59e-99	289
Msa0796430	AT2G36830.1	61.538	247	94	1	3	248	5	251	2.61e-98	287
Msa0796430	AT4G01470.1	55.466	247	107	2	3	246	5	251	2.38e-88	262
Msa0796430	AT1G73190.1	53.909	243	106	2	5	241	10	252	3.19e-76	232
Msa0796430	AT1G17810.1	53.600	250	110	2	5	248	10	259	3.44e-76	232
Msa0796430	AT2G25810.1	54.000	250	110	3	1	249	1	246	5.59e-76	231
Msa0796430	AT3G47440.1	45.798	238	126	3	1	236	4	240	7.87e-66	205

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Find 108 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTATCTTCACCATTT+TGG	0.165967	5_3:-8480534	None:intergenic
AAAATGGTGAAGATAGGTTT+TGG	0.375817	5_3:+8480536	Msa0796430:exon
AAAATGTATATGATTGTGAA+AGG	0.508605	5_3:-8480373	None:intergenic
AAATGTATATGATTGTGAAA+GGG	0.558417	5_3:-8480372	None:intergenic
AACGATGGAGCCAAGCAATT+GGG	0.495370	5_3:-8481762	None:intergenic
AACTCTTCATATATATACCA+TGG	0.629426	5_3:+8480405	Msa0796430:five_prime_UTR
AAGGGTGAGGGTGGTTAGTT+AGG	0.388555	5_3:+8480273	Msa0796430:five_prime_UTR
AAGTTTCCACTAACCACAGC+TGG	0.477936	5_3:-8482368	None:intergenic
AATAAAGAAAAGGGTGAGGG+TGG	0.594742	5_3:+8480264	Msa0796430:five_prime_UTR
ACAACGAACCCAATAGCAAT+CGG	0.576808	5_3:-8482278	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAATAAAGAAAAGGGTG+AGG	+	chr5_3:8480260-8480279	Msa0796430:five_prime_UTR	30.0%
TGAAATAAAGAAAAGGGTGA+GGG	+	chr5_3:8480261-8480280	Msa0796430:five_prime_UTR	30.0%
GGCAATTTACTTGAAAACAA+AGG	-	chr5_3:8480516-8480535	None:intergenic	30.0%
TTACGTGAGACAAAATTTGA+AGG	+	chr5_3:8481027-8481046	Msa0796430:intron	30.0%
TGGTAACAATATTGGACTAT+TGG	+	chr5_3:8481130-8481149	Msa0796430:intron	30.0%
ACTATTGGTACAAATGTAGA+AGG	+	chr5_3:8481145-8481164	Msa0796430:intron	30.0%
TGGTAACAATATTGGACTAT+TGG	+	chr5_3:8481130-8481149	Msa0796430:intron	30.0%
ACTATTGGTACAAATGTAGA+AGG	+	chr5_3:8481145-8481164	Msa0796430:intron	30.0%
AAATTGTTTCAGTCGAGATT+TGG	-	chr5_3:8481906-8481925	None:intergenic	30.0%
TGAACAAGTTTAAGCTTGAA+AGG	-	chr5_3:8482536-8482555	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	8480260	8482662	8480260	ID=Msa0796430;Name=Msa0796430
chr5_3	mRNA	8480260	8482662	8480260	ID=Msa0796430-mRNA-1;Parent=Msa0796430;Name=Msa0796430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=279\|1\|1\|1\|1\|1\|3\|151\|249
chr5_3	exon	8480260	8480665	8480260	ID=Msa0796430-mRNA-1:exon:3485;Parent=Msa0796430-mRNA-1
chr5_3	exon	8481570	8481817	8481570	ID=Msa0796430-mRNA-1:exon:3486;Parent=Msa0796430-mRNA-1
chr5_3	exon	8482137	8482662	8482137	ID=Msa0796430-mRNA-1:exon:3487;Parent=Msa0796430-mRNA-1
chr5_3	five_prime_UTR	8480260	8480538	8480260	ID=Msa0796430-mRNA-1:five_prime_utr;Parent=Msa0796430-mRNA-1
chr5_3	CDS	8480539	8480665	8480539	ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3	CDS	8481570	8481817	8481570	ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3	CDS	8482137	8482511	8482137	ID=Msa0796430-mRNA-1:cds;Parent=Msa0796430-mRNA-1
chr5_3	three_prime_UTR	8482512	8482662	8482512	ID=Msa0796430-mRNA-1:three_prime_utr;Parent=Msa0796430-mRNA-1

Gene Sequence

>Msa0796430

ATGGTGAAGATAGGTTTTGGTACATTTGATGACTCTTTTAGCATTGCCTCCCTTAAGGCTTATCTATCAGAGTTCATTGCCACTCTGATTTTTGTGTTCGCTGGAGTTGGATCAGCAATTGCTTACAATGATCTAACATCAGATGCAGCCTTGGATCCAGCGGGTTTAGTGGCAGTAGCTGTGGCTCATGCATTTGCACTATTTGTTGGTGTGGCCATAGCAGCAAACATCTCAGGTGGACATTTGAACCCAGCTGTTACTTTTGGATTAGCCATTGGAGGCAACATCACCATCCTAACTGGTCTCTTCTATTGGATTGCCCAATTGCTTGGCTCCATCGTTGCATGTCTCCTCCTCAATTATGTCACCGCTAAGAGTGTTCCAACCCATGGAGTGGCTGCTGGACTGAACCCTATTGCTGGATTAGTGTTTGAGATTATCATAACATTTGGATTGGTTTACACTGTTTATGCCACAGCAGCTGACCCCAAAAAGGGCTCAATTGGAACCATTGCACCGATTGCTATTGGGTTCGTTGTCGGAGCTAACATCTTAGCCGCCGGTCCATTCAGTGGAGGTTCAATGAACCCGGCTCGCTCATTCGGCCCAGCTGTGGTTAGTGGAAACTTTGCTGATAACTGGATCTATTGGGTTGGACCATTGATAGGAGGAGGCTTGGCTGGGTTGATTTATGGTGACGTCTTTATTGGTTCATATTCCCCAGCACCAGCATCTGAAACATACCCTTAA

Protein sequence

>Msa0796430

MVKIGFGTFDDSFSIASLKAYLSEFIATLIFVFAGVGSAIAYNDLTSDAALDPAGLVAVAVAHAFALFVGVAIAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLNYVTAKSVPTHGVAAGLNPIAGLVFEIIITFGLVYTVYATAADPKKGSIGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYSPAPASETYP*