Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183980 | P31656.1 | 100.000 | 358 | 0 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183980 | sp|P31656|CADH_MEDSA | 100.000 | 358 | 0 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183980 | A0A072VPZ8 | 98.603 | 358 | 5 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013540 | Msa0183980 | 0.807953 | 3.928193e-50 | -8.615850e-47 |
| Msa0016510 | Msa0183980 | 0.847295 | 1.266134e-59 | -8.615850e-47 |
| Msa0037320 | Msa0183980 | 0.803042 | 4.209468e-49 | -8.615850e-47 |
| Msa0051210 | Msa0183980 | 0.803244 | 3.824164e-49 | -8.615850e-47 |
| Msa0051450 | Msa0183980 | 0.810758 | 9.829636e-51 | -8.615850e-47 |
| Msa0074750 | Msa0183980 | 0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa0136550 | Msa0183980 | 0.831776 | 1.377567e-55 | -8.615850e-47 |
| Msa0149890 | Msa0183980 | 0.817024 | 4.087076e-52 | -8.615850e-47 |
| Msa0178040 | Msa0183980 | 0.803074 | 4.146830e-49 | -8.615850e-47 |
| Msa0183980 | Msa0196670 | 0.825934 | 3.574875e-54 | -8.615850e-47 |
| Msa0183980 | Msa0271550 | 0.810908 | 9.123439e-51 | -8.615850e-47 |
| Msa0183980 | Msa0271790 | 0.802452 | 5.573850e-49 | -8.615850e-47 |
| Msa0183980 | Msa0308440 | 0.809052 | 2.288803e-50 | -8.615850e-47 |
| Msa0183980 | Msa0403490 | 0.807697 | 4.452922e-50 | -8.615850e-47 |
| Msa0183980 | Msa0438040 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0183980 | Msa0566350 | 0.821017 | 5.047906e-53 | -8.615850e-47 |
| Msa0183980 | Msa0566750 | 0.818954 | 1.496575e-52 | -8.615850e-47 |
| Msa0183980 | Msa0605190 | 0.811406 | 7.112429e-51 | -8.615850e-47 |
| Msa0183980 | Msa0654690 | 0.818499 | 1.899116e-52 | -8.615850e-47 |
| Msa0183980 | Msa0662540 | 0.806204 | 9.216779e-50 | -8.615850e-47 |
| Msa0183980 | Msa0707010 | 0.802837 | 4.641411e-49 | -8.615850e-47 |
| Msa0183980 | Msa0750810 | 0.817864 | 2.643694e-52 | -8.615850e-47 |
| Msa0183980 | Msa0756380 | 0.800224 | 1.593527e-48 | -8.615850e-47 |
| Msa0183980 | Msa0789560 | 0.808102 | 3.651788e-50 | -8.615850e-47 |
| Msa0183980 | Msa0836650 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0183980 | Msa1026640 | 0.858382 | 8.563048e-63 | -8.615850e-47 |
| Msa0183980 | Msa1077070 | 0.820468 | 6.750492e-53 | -8.615850e-47 |
| Msa0183980 | Msa1108710 | 0.807001 | 6.256407e-50 | -8.615850e-47 |
| Msa0183980 | Msa1122780 | 0.821308 | 4.325738e-53 | -8.615850e-47 |
| Msa0183980 | Msa1209190 | 0.804987 | 1.659138e-49 | -8.615850e-47 |
| Msa0183980 | Msa1214170 | 0.804438 | 2.160346e-49 | -8.615850e-47 |
| Msa0183980 | Msa1336040 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
| Msa0183980 | Msa1339190 | 0.806201 | 9.227956e-50 | -8.615850e-47 |
| Msa0183980 | Msa1360020 | 0.812622 | 3.864922e-51 | -8.615850e-47 |
| Msa0183980 | Msa1391720 | 0.801666 | 8.086127e-49 | -8.615850e-47 |
| Msa0183980 | Msa1411410 | 0.801934 | 7.123046e-49 | -8.615850e-47 |
| Msa0183980 | Msa1426710 | 0.806683 | 7.300997e-50 | -8.615850e-47 |
| Msa0183980 | Msa1437330 | 0.809585 | 1.759332e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183980 | MtrunA17_Chr1g0208031 | 98.603 | 358 | 5 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| Msa0183980 | MtrunA17_Chr5g0411911 | 52.023 | 346 | 166 | 0 | 9 | 354 | 13 | 358 | 3.56e-124 | 361 |
| Msa0183980 | MtrunA17_Chr5g0411801 | 51.312 | 343 | 167 | 0 | 9 | 351 | 43 | 385 | 1.78e-122 | 358 |
| Msa0183980 | MtrunA17_Chr5g0411871 | 52.000 | 350 | 168 | 0 | 2 | 351 | 19 | 368 | 5.45e-122 | 356 |
| Msa0183980 | MtrunA17_Chr5g0411841 | 52.507 | 339 | 161 | 0 | 13 | 351 | 15 | 353 | 9.73e-122 | 355 |
| Msa0183980 | MtrunA17_Chr4g0064291 | 50.708 | 353 | 172 | 1 | 1 | 351 | 1 | 353 | 1.57e-120 | 352 |
| Msa0183980 | MtrunA17_Chr5g0411901 | 50.729 | 343 | 169 | 0 | 9 | 351 | 12 | 354 | 1.73e-120 | 352 |
| Msa0183980 | MtrunA17_Chr5g0411881 | 50.146 | 343 | 171 | 0 | 9 | 351 | 12 | 354 | 5.67e-120 | 351 |
| Msa0183980 | MtrunA17_Chr5g0411821 | 52.507 | 339 | 161 | 0 | 13 | 351 | 15 | 353 | 3.06e-119 | 350 |
| Msa0183980 | MtrunA17_Chr5g0411931 | 50.729 | 343 | 169 | 0 | 9 | 351 | 11 | 353 | 4.79e-119 | 348 |
| Msa0183980 | MtrunA17_Chr8g0367151 | 52.478 | 343 | 163 | 0 | 9 | 351 | 11 | 353 | 1.24e-118 | 347 |
| Msa0183980 | MtrunA17_Chr5g0411811 | 53.097 | 339 | 159 | 0 | 13 | 351 | 15 | 353 | 1.34e-116 | 342 |
| Msa0183980 | MtrunA17_Chr5g0411941 | 51.297 | 347 | 169 | 0 | 8 | 354 | 10 | 356 | 6.41e-114 | 335 |
| Msa0183980 | MtrunA17_Chr1g0157021 | 49.280 | 347 | 175 | 1 | 9 | 354 | 10 | 356 | 4.02e-109 | 323 |
| Msa0183980 | MtrunA17_Chr8g0383721 | 50.292 | 342 | 169 | 1 | 13 | 354 | 15 | 355 | 2.29e-108 | 321 |
| Msa0183980 | MtrunA17_Chr5g0411791 | 51.863 | 322 | 155 | 0 | 30 | 351 | 6 | 327 | 8.44e-105 | 311 |
| Msa0183980 | MtrunA17_Chr2g0279791 | 44.759 | 353 | 193 | 2 | 3 | 354 | 53 | 404 | 1.78e-99 | 300 |
| Msa0183980 | MtrunA17_Chr2g0279801 | 41.706 | 211 | 112 | 2 | 144 | 354 | 13 | 212 | 1.94e-41 | 144 |
| Msa0183980 | MtrunA17_Chr8g0385221 | 25.269 | 372 | 242 | 10 | 13 | 351 | 56 | 424 | 5.26e-24 | 102 |
| Msa0183980 | MtrunA17_Chr5g0411851 | 50.820 | 61 | 30 | 0 | 9 | 69 | 11 | 71 | 2.81e-18 | 79.7 |
| Msa0183980 | MtrunA17_Chr5g0411861 | 44.068 | 59 | 33 | 0 | 296 | 354 | 2 | 60 | 8.19e-14 | 65.9 |
| Msa0183980 | MtrunA17_Chr5g0440521 | 25.000 | 340 | 221 | 9 | 35 | 342 | 44 | 381 | 4.63e-13 | 69.7 |
| Msa0183980 | MtrunA17_Chr3g0125961 | 23.582 | 335 | 226 | 8 | 37 | 342 | 37 | 370 | 3.09e-11 | 64.3 |
| Msa0183980 | MtrunA17_Chr3g0125911 | 23.881 | 335 | 225 | 8 | 37 | 342 | 37 | 370 | 3.09e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183980 | AT3G19450.1 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 525 |
| Msa0183980 | AT4G34230.1 | 77.311 | 357 | 80 | 1 | 1 | 357 | 1 | 356 | 5.34e-178 | 498 |
| Msa0183980 | AT4G34230.2 | 77.031 | 357 | 81 | 1 | 1 | 357 | 1 | 356 | 6.20e-177 | 495 |
| Msa0183980 | AT2G21890.1 | 49.432 | 352 | 177 | 1 | 8 | 358 | 4 | 355 | 2.31e-121 | 355 |
| Msa0183980 | AT4G39330.1 | 50.877 | 342 | 168 | 0 | 13 | 354 | 15 | 356 | 2.41e-120 | 352 |
| Msa0183980 | AT2G21730.1 | 49.292 | 353 | 177 | 2 | 8 | 358 | 4 | 356 | 6.47e-120 | 351 |
| Msa0183980 | AT4G37970.1 | 48.830 | 342 | 175 | 0 | 13 | 354 | 16 | 357 | 3.70e-118 | 347 |
| Msa0183980 | AT4G37990.1 | 51.009 | 347 | 170 | 0 | 8 | 354 | 6 | 352 | 1.54e-113 | 335 |
| Msa0183980 | AT4G37980.1 | 47.839 | 347 | 181 | 0 | 8 | 354 | 6 | 352 | 7.88e-108 | 320 |
| Msa0183980 | AT1G72680.1 | 43.503 | 354 | 199 | 1 | 1 | 354 | 1 | 353 | 1.57e-97 | 293 |
| Msa0183980 | AT4G39330.2 | 49.481 | 289 | 146 | 0 | 13 | 301 | 15 | 303 | 1.36e-96 | 290 |
| Msa0183980 | AT4G37970.4 | 47.857 | 280 | 146 | 0 | 13 | 292 | 16 | 295 | 2.10e-89 | 271 |
| Msa0183980 | AT4G37980.2 | 48.239 | 284 | 146 | 1 | 8 | 290 | 6 | 289 | 1.08e-82 | 254 |
| Msa0183980 | AT4G37970.3 | 50.000 | 228 | 114 | 0 | 13 | 240 | 16 | 243 | 7.48e-75 | 232 |
| Msa0183980 | AT4G37970.2 | 50.000 | 228 | 114 | 0 | 13 | 240 | 16 | 243 | 1.14e-74 | 232 |
| Msa0183980 | AT5G63620.1 | 26.005 | 373 | 238 | 12 | 13 | 351 | 58 | 426 | 5.47e-24 | 102 |
| Msa0183980 | AT5G63620.2 | 25.737 | 373 | 239 | 12 | 13 | 351 | 58 | 426 | 8.80e-24 | 102 |
| Msa0183980 | AT5G63620.3 | 28.870 | 239 | 145 | 6 | 13 | 229 | 58 | 293 | 1.74e-21 | 94.0 |
| Msa0183980 | AT1G32780.1 | 25.439 | 342 | 215 | 10 | 37 | 339 | 37 | 377 | 4.70e-14 | 73.2 |
| Msa0183980 | AT1G22430.2 | 26.254 | 339 | 211 | 13 | 37 | 340 | 42 | 376 | 1.97e-13 | 71.2 |
| Msa0183980 | AT1G22430.1 | 26.254 | 339 | 211 | 13 | 37 | 340 | 42 | 376 | 1.97e-13 | 71.2 |
| Msa0183980 | AT1G64710.2 | 23.512 | 336 | 224 | 10 | 37 | 340 | 13 | 347 | 1.34e-11 | 65.5 |
| Msa0183980 | AT1G64710.1 | 23.512 | 336 | 224 | 10 | 37 | 340 | 36 | 370 | 1.74e-11 | 65.5 |
| Msa0183980 | AT4G22110.2 | 24.478 | 335 | 218 | 11 | 37 | 338 | 43 | 375 | 2.15e-11 | 65.1 |
| Msa0183980 | AT4G22110.1 | 24.478 | 335 | 218 | 11 | 37 | 338 | 43 | 375 | 2.15e-11 | 65.1 |
Find 115 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTCCACTTTCACATTT+TGG | 0.140332 | 1_4:+73102816 | Msa0183980:CDS |
| GAAACTAAAGCAATAATATT+TGG | 0.171337 | 1_4:-73104172 | None:intergenic |
| CAGAGGAGATGTTGGAGTTT+TGG | 0.195897 | 1_4:+73103592 | Msa0183980:CDS |
| CCCAGGAACCATAGGATAAT+TGG | 0.245188 | 1_4:-73101759 | None:intergenic |
| CATGATTGAAATTGTAACTA+TGG | 0.253443 | 1_4:+73103635 | Msa0183980:CDS |
| GCTTACCTAATATTTGAAAC+TGG | 0.254010 | 1_4:+73104109 | Msa0183980:three_prime_UTR |
| ATGTCCCAGTTTCAAATATT+AGG | 0.285207 | 1_4:-73104114 | None:intergenic |
| TCCAATTATCCTATGGTTCC+TGG | 0.314697 | 1_4:+73101758 | Msa0183980:CDS |
| AAGCAATAATATTTGGCATT+TGG | 0.317520 | 1_4:-73104165 | None:intergenic |
| AGTCGTGTTTGCTTTGCTTT+TGG | 0.333364 | 1_4:+73104031 | Msa0183980:three_prime_UTR |
| CTTTCATTGCTCAAAATTGA+TGG | 0.339894 | 1_4:+73103095 | Msa0183980:CDS |
| TGGGCTAAGAGGTGGAATAT+TGG | 0.354895 | 1_4:+73102851 | Msa0183980:CDS |
| TCAATTACTGGAAGCTTTGT+TGG | 0.375046 | 1_4:+73103555 | Msa0183980:CDS |
| GGGCTAAGAGGTGGAATATT+GGG | 0.377765 | 1_4:+73102852 | Msa0183980:CDS |
| AGTGCAAACGTGAGTGGGTT+TGG | 0.394277 | 1_4:-73101355 | None:intergenic |
| CATAGTTACAATTTCAATCA+TGG | 0.394791 | 1_4:-73103634 | None:intergenic |
| GGCTCAAGAGGGTGACCAAC+AGG | 0.414159 | 1_4:-73103068 | None:intergenic |
| TCTTCAATTTGTTACACCTA+TGG | 0.415794 | 1_4:+73103151 | Msa0183980:CDS |
| AAAGAGGCACTTGAGGATCT+TGG | 0.422297 | 1_4:+73102963 | Msa0183980:CDS |
| TGATGGGAAATTGATCTTGA+TGG | 0.430428 | 1_4:+73103112 | Msa0183980:CDS |
| AACAATGGTGCAACTTGCTC+TGG | 0.430947 | 1_4:-73102774 | None:intergenic |
| TGCTCTGGTGCCAATCCCTC+TGG | 0.434175 | 1_4:-73102759 | None:intergenic |
| CAATTACTGGAAGCTTTGTT+GGG | 0.441579 | 1_4:+73103556 | Msa0183980:CDS |
| GTGAAAGTAGCAAAGGCATT+AGG | 0.442216 | 1_4:+73102900 | Msa0183980:CDS |
| ACGTGAGTGGGTTTGGTTAG+TGG | 0.442221 | 1_4:-73101348 | None:intergenic |
| TTGTTGTGTTTGTATAATTG+AGG | 0.442514 | 1_4:+73103813 | Msa0183980:three_prime_UTR |
| CATGATTGCTTAGGGAATGA+AGG | 0.442522 | 1_4:+73104209 | Msa0183980:three_prime_UTR |
| AGAAGAATGATGTGAGGTAT+AGG | 0.457166 | 1_4:+73103688 | Msa0183980:CDS |
| CCGTCCTATGTTATTCCAAC+GGG | 0.464767 | 1_4:+73104251 | Msa0183980:three_prime_UTR |
| GTAGGGAGGAAGTCAATTAC+TGG | 0.465862 | 1_4:+73103543 | Msa0183980:intron |
| TGGCATTTGGCATACGTGTA+TGG | 0.466430 | 1_4:-73104152 | None:intergenic |
| TTGTTAGCTCAGATACTGTT+GGG | 0.467194 | 1_4:+73103000 | Msa0183980:CDS |
| AATACTGTAACAAGAAGATC+TGG | 0.467552 | 1_4:+73102073 | Msa0183980:CDS |
| CTTGTTAGCTCAGATACTGT+TGG | 0.468029 | 1_4:+73102999 | Msa0183980:CDS |
| CGTGAGTGGGTTTGGTTAGT+GGG | 0.469124 | 1_4:-73101347 | None:intergenic |
| GTTTCAAATATTAGGTAAGC+AGG | 0.470896 | 1_4:-73104106 | None:intergenic |
| TGGCATGTCCAATTATCCTA+TGG | 0.476856 | 1_4:+73101751 | Msa0183980:CDS |
| GAAGGAGACAGAGGAGATGT+TGG | 0.486422 | 1_4:+73103584 | Msa0183980:CDS |
| TACAATGATGTTTACACTGA+CGG | 0.486763 | 1_4:+73102099 | Msa0183980:CDS |
| CTCCATACACATACACTCTC+AGG | 0.487023 | 1_4:+73101507 | Msa0183980:CDS |
| TTTCATTGCTCAAAATTGAT+GGG | 0.487627 | 1_4:+73103096 | Msa0183980:CDS |
| GAAAACAGTGCAAACGTGAG+TGG | 0.488495 | 1_4:-73101361 | None:intergenic |
| AAGTAAATTTGAGGAGTGAA+AGG | 0.492257 | 1_4:+73103731 | Msa0183980:exon |
| TGTGAAAATACCAGAGGGAT+TGG | 0.495073 | 1_4:+73102749 | Msa0183980:CDS |
| TTGGCTGCAAAAGACCCTTC+CGG | 0.496088 | 1_4:+73101476 | Msa0183980:CDS |
| CACCTGAGAGTGTATGTGTA+TGG | 0.504281 | 1_4:-73101509 | None:intergenic |
| TTCAGCCCAAAATGTGAAAG+TGG | 0.506368 | 1_4:-73102822 | None:intergenic |
| AGAGGTGGAATATTGGGTCT+TGG | 0.506833 | 1_4:+73102858 | Msa0183980:CDS |
| GTTGCACCATTGTTGTGTGC+AGG | 0.511420 | 1_4:+73102783 | Msa0183980:CDS |
| CTTGGTGGAGTAGGACACAT+GGG | 0.512497 | 1_4:+73102876 | Msa0183980:CDS |
| TGTGTATGGAGTGAGAATTC+CGG | 0.512818 | 1_4:-73101495 | None:intergenic |
| CTTACCTAATATTTGAAACT+GGG | 0.515181 | 1_4:+73104110 | Msa0183980:three_prime_UTR |
| GGTGGAATATTGGGTCTTGG+TGG | 0.517471 | 1_4:+73102861 | Msa0183980:CDS |
| AAAATATTTGATAAATCACT+TGG | 0.517804 | 1_4:+73104333 | Msa0183980:three_prime_UTR |
| CTGAAAACACCTGGGCTAAG+AGG | 0.518039 | 1_4:+73102840 | Msa0183980:CDS |
| CCAATTATCCTATGGTTCCT+GGG | 0.521261 | 1_4:+73101759 | Msa0183980:CDS |
| GTGGGAGTTGGTCTTCTCGT+TGG | 0.525528 | 1_4:+73102009 | Msa0183980:CDS |
| GTTCAAAGTGGGAGAAATTG+TGG | 0.526442 | 1_4:+73101990 | Msa0183980:CDS |
| GTGGGAGAAATTGTGGGAGT+TGG | 0.528018 | 1_4:+73101997 | Msa0183980:CDS |
| AGAAAGAACAACAGTAGGAT+TGG | 0.528316 | 1_4:+73101457 | Msa0183980:CDS |
| GAAGAAGAAAGAGGCACTTG+AGG | 0.529985 | 1_4:+73102956 | Msa0183980:CDS |
| TGTCAAAGGAAGTAAATTTG+AGG | 0.531733 | 1_4:+73103722 | Msa0183980:CDS |
| AGTAAATTTGAGGAGTGAAA+GGG | 0.536045 | 1_4:+73103732 | Msa0183980:exon |
| GGTTGGTGAGGTACTAGAGG+TGG | 0.538320 | 1_4:+73101951 | Msa0183980:CDS |
| CATACATACCCAGGAACCAT+AGG | 0.538858 | 1_4:-73101767 | None:intergenic |
| GATGGGAAATTGATCTTGAT+GGG | 0.539815 | 1_4:+73103113 | Msa0183980:CDS |
| GTTACACCTATGGTCATGCT+AGG | 0.542756 | 1_4:+73103161 | Msa0183980:CDS |
| TTCAAAGTGGGAGAAATTGT+GGG | 0.545521 | 1_4:+73101991 | Msa0183980:CDS |
| ATCATTGACACTGTTCCTGT+TGG | 0.558930 | 1_4:+73103053 | Msa0183980:CDS |
| ATATTGGGTCTTGGTGGAGT+AGG | 0.559461 | 1_4:+73102867 | Msa0183980:CDS |
| TTCTGATAAGAAGAAGAAAG+AGG | 0.560483 | 1_4:+73102947 | Msa0183980:CDS |
| AGGTGGGTTCAAATGTTACA+AGG | 0.565769 | 1_4:+73101968 | Msa0183980:CDS |
| GTTGGTGAGGTACTAGAGGT+GGG | 0.567462 | 1_4:+73101952 | Msa0183980:CDS |
| AGGTTCGTTGTGGATGTCAA+AGG | 0.573106 | 1_4:+73103708 | Msa0183980:CDS |
| AGGTAAAGATTTGTCAAAGT+AGG | 0.575343 | 1_4:-73104086 | None:intergenic |
| AAGTCCCGTTGGAATAACAT+AGG | 0.576858 | 1_4:-73104255 | None:intergenic |
| TAGGGAATGAAGGTATTGCA+TGG | 0.578144 | 1_4:+73104219 | Msa0183980:three_prime_UTR |
| TACATCAAAATTCATTACTG+TGG | 0.582501 | 1_4:+73101689 | Msa0183980:CDS |
| TCCGTCCTATGTTATTCCAA+CGG | 0.584475 | 1_4:+73104250 | Msa0183980:three_prime_UTR |
| AGGGAATGAAGGTATTGCAT+GGG | 0.585204 | 1_4:+73104220 | Msa0183980:three_prime_UTR |
| CCCGTTGGAATAACATAGGA+CGG | 0.587997 | 1_4:-73104251 | None:intergenic |
| TTGGTGGAGTAGGACACATG+GGG | 0.596788 | 1_4:+73102877 | Msa0183980:CDS |
| AAATGTTACAAGGTTCAAAG+TGG | 0.597798 | 1_4:+73101978 | Msa0183980:CDS |
| AATGTTACAAGGTTCAAAGT+GGG | 0.599126 | 1_4:+73101979 | Msa0183980:CDS |
| ACTCTCGTTCTCAAAAGAGT+TGG | 0.599535 | 1_4:-73104011 | None:intergenic |
| TAGGTGTAACAAATTGAAGA+GGG | 0.600517 | 1_4:-73103148 | None:intergenic |
| ATAGGTGTAACAAATTGAAG+AGG | 0.601584 | 1_4:-73103149 | None:intergenic |
| AATATTCCACCTCTTAGCCC+AGG | 0.603820 | 1_4:-73102849 | None:intergenic |
| AAAACACCTGGGCTAAGAGG+TGG | 0.604672 | 1_4:+73102843 | Msa0183980:CDS |
| GTGAGTATAATAAGTCCCGT+TGG | 0.605685 | 1_4:-73104266 | None:intergenic |
| AAAACAGTGCAAACGTGAGT+GGG | 0.607428 | 1_4:-73101360 | None:intergenic |
| AATGAAAGATAAGGCTCAAG+AGG | 0.608696 | 1_4:-73103080 | None:intergenic |
| TCTTGGTGGAGTAGGACACA+TGG | 0.610428 | 1_4:+73102875 | Msa0183980:CDS |
| GCTGCAGAAAGAACAACAGT+AGG | 0.613158 | 1_4:+73101452 | Msa0183980:CDS |
| TGTGAGGTATAGGTTCGTTG+TGG | 0.619087 | 1_4:+73103698 | Msa0183980:CDS |
| AAGCTTTGTTGGGAGCGTGA+AGG | 0.622128 | 1_4:+73103566 | Msa0183980:CDS |
| TTTGTTGTGAAAATACCAGA+GGG | 0.624457 | 1_4:+73102744 | Msa0183980:CDS |
| CAGGCATGAAGTGGTTGGTG+AGG | 0.629500 | 1_4:+73101939 | Msa0183980:intron |
| CACTGACGGAAAGATCACTC+AGG | 0.632595 | 1_4:+73102113 | Msa0183980:CDS |
| TTAAAACTATGCAGAAACAC+AGG | 0.640578 | 1_4:+73101653 | Msa0183980:intron |
| ACTATGCAGAAACACAGGAC+CGG | 0.643408 | 1_4:+73101658 | Msa0183980:intron |
| ATACAATATCATGAAGAGTG+TGG | 0.644208 | 1_4:+73103773 | Msa0183980:three_prime_UTR |
| GTCACACCTGCACACAACAA+TGG | 0.650120 | 1_4:-73102789 | None:intergenic |
| TGGGAGCGTGAAGGAGACAG+AGG | 0.652158 | 1_4:+73103575 | Msa0183980:CDS |
| ATGAAAGATAAGGCTCAAGA+GGG | 0.658619 | 1_4:-73103079 | None:intergenic |
| GATTGGAGAAGAATGATGTG+AGG | 0.663743 | 1_4:+73103682 | Msa0183980:CDS |
| GTTTGTTGTGAAAATACCAG+AGG | 0.664399 | 1_4:+73102743 | Msa0183980:CDS |
| AGTGGTTGGTGAGGTACTAG+AGG | 0.677629 | 1_4:+73101948 | Msa0183980:CDS |
| ACTGACGGAAAGATCACTCA+GGG | 0.682017 | 1_4:+73102114 | Msa0183980:CDS |
| TATGGAGTGAGAATTCCGGA+AGG | 0.698628 | 1_4:-73101491 | None:intergenic |
| ATGGAGTGAGAATTCCGGAA+GGG | 0.705897 | 1_4:-73101490 | None:intergenic |
| AAGAGCTTATCACAGTGACA+TGG | 0.707377 | 1_4:-73102926 | None:intergenic |
| AGGTGTAACAAATTGAAGAG+GGG | 0.708980 | 1_4:-73103147 | None:intergenic |
| GACGGAAAGATCACTCAGGG+TGG | 0.713421 | 1_4:+73102117 | Msa0183980:CDS |
| TGGTGGAGTAGGACACATGG+GGG | 0.751756 | 1_4:+73102878 | Msa0183980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATGTTTTTTTTTTTAAAT+GGG | - | chr1_4:73102272-73102291 | None:intergenic | 10.0% |
| !!! | TCAATGTTTTTTTTTTTAAA+TGG | - | chr1_4:73102273-73102292 | None:intergenic | 10.0% |
| !! | TAAAAGTAATTAATTTAGTT+GGG | - | chr1_4:73102626-73102645 | None:intergenic | 10.0% |
| !! | ATAAAAGTAATTAATTTAGT+TGG | - | chr1_4:73102627-73102646 | None:intergenic | 10.0% |
| !! | TAAAAATTACTAACAAATTT+AGG | - | chr1_4:73103301-73103320 | None:intergenic | 10.0% |
| !! | ATATAATTAGAAAAATTAGA+AGG | + | chr1_4:73103954-73103973 | Msa0183980:three_prime_UTR | 10.0% |
| !!! | ATGTTATGAAAAATGTTTTA+TGG | + | chr1_4:73102443-73102462 | Msa0183980:intron | 15.0% |
| !!! | ATTAATTACTTTTATGAATC+TGG | + | chr1_4:73102632-73102651 | Msa0183980:intron | 15.0% |
| !!! | CTTTTAAATAACTTGTAATT+AGG | + | chr1_4:73103350-73103369 | Msa0183980:intron | 15.0% |
| !!! | TTATTTAAAAATCTAGTTCA+AGG | + | chr1_4:73103400-73103419 | Msa0183980:intron | 15.0% |
| !! | AAAATATTTGATAAATCACT+TGG | + | chr1_4:73104333-73104352 | Msa0183980:three_prime_UTR | 15.0% |
| !! | ATCTATCAAATTATTATGTC+CGG | + | chr1_4:73101815-73101834 | Msa0183980:intron | 20.0% |
| !!! | TATGATTGTTTTGAAAAAAC+AGG | + | chr1_4:73101920-73101939 | Msa0183980:intron | 20.0% |
| !! | AATTTAGATATGTTCAATTG+TGG | + | chr1_4:73102539-73102558 | Msa0183980:intron | 20.0% |
| !! | TCACGGTAAAAAAAAAAATA+TGG | - | chr1_4:73102586-73102605 | None:intergenic | 20.0% |
| !!! | TTTTAAACTGATTATGTGTT+TGG | + | chr1_4:73102705-73102724 | Msa0183980:intron | 20.0% |
| !! | TTTAAACTGATTATGTGTTT+GGG | + | chr1_4:73102706-73102725 | Msa0183980:intron | 20.0% |
| !!! | TTTTAGCTTAGTTATTGAAT+AGG | + | chr1_4:73103216-73103235 | Msa0183980:intron | 20.0% |
| !! | TTAAAATCTTCAATAGTCAA+GGG | - | chr1_4:73103243-73103262 | None:intergenic | 20.0% |
| !!! | TTTAAAATCTTCAATAGTCA+AGG | - | chr1_4:73103244-73103263 | None:intergenic | 20.0% |
| !!! | CTTTAAGTTATTGAACAATT+TGG | - | chr1_4:73103442-73103461 | None:intergenic | 20.0% |
| !! | TTAGAAGATATCATTACAAT+TGG | - | chr1_4:73103504-73103523 | None:intergenic | 20.0% |
| !! | GAAACTAAAGCAATAATATT+TGG | - | chr1_4:73104175-73104194 | None:intergenic | 20.0% |
| !!! | ATTTTGATGTAAACATCATC+CGG | - | chr1_4:73101680-73101699 | None:intergenic | 25.0% |
| ! | TACATCAAAATTCATTACTG+TGG | + | chr1_4:73101689-73101708 | Msa0183980:CDS | 25.0% |
| ! | CCTTAAAATTAATCGAAACA+CGG | - | chr1_4:73101857-73101876 | None:intergenic | 25.0% |
| !!! | TTATTACTTTTGTTCAACGA+CGG | - | chr1_4:73102157-73102176 | None:intergenic | 25.0% |
| ! | TAACAGGTGTGAAAAAAATT+GGG | - | chr1_4:73102472-73102491 | None:intergenic | 25.0% |
| ! | TTAACAGGTGTGAAAAAAAT+TGG | - | chr1_4:73102473-73102492 | None:intergenic | 25.0% |
| !! | TTTTATGAATCTGGTGTAAA+AGG | + | chr1_4:73102641-73102660 | Msa0183980:intron | 25.0% |
| ! | TTAAACTGATTATGTGTTTG+GGG | + | chr1_4:73102707-73102726 | Msa0183980:intron | 25.0% |
| !! | ATTTTGAGCAATGAAAGATA+AGG | - | chr1_4:73103092-73103111 | None:intergenic | 25.0% |
| ! | TTTCATTGCTCAAAATTGAT+GGG | + | chr1_4:73103096-73103115 | Msa0183980:CDS | 25.0% |
| ! | TGTAATTAGGTCTTGAATTT+AGG | + | chr1_4:73103363-73103382 | Msa0183980:intron | 25.0% |
| ! | GTAATTAGGTCTTGAATTTA+GGG | + | chr1_4:73103364-73103383 | Msa0183980:intron | 25.0% |
| ! | CATAGTTACAATTTCAATCA+TGG | - | chr1_4:73103637-73103656 | None:intergenic | 25.0% |
| ! | CATGATTGAAATTGTAACTA+TGG | + | chr1_4:73103635-73103654 | Msa0183980:CDS | 25.0% |
| !!! | TAACAAAGCTTTTGAAAGAT+TGG | + | chr1_4:73103665-73103684 | Msa0183980:CDS | 25.0% |
| ! | TTGTTGTGTTTGTATAATTG+AGG | + | chr1_4:73103813-73103832 | Msa0183980:three_prime_UTR | 25.0% |
| ! | TAGAAGGAAAGAAAAACAAA+AGG | + | chr1_4:73103970-73103989 | Msa0183980:three_prime_UTR | 25.0% |
| ! | AGAAAAACAAAAGGATATGT+TGG | + | chr1_4:73103979-73103998 | Msa0183980:three_prime_UTR | 25.0% |
| ! | GAAAAACAAAAGGATATGTT+GGG | + | chr1_4:73103980-73103999 | Msa0183980:three_prime_UTR | 25.0% |
| !! | CTTACCTAATATTTGAAACT+GGG | + | chr1_4:73104110-73104129 | Msa0183980:three_prime_UTR | 25.0% |
| ! | AAGCAATAATATTTGGCATT+TGG | - | chr1_4:73104168-73104187 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCATGATTGCTTA+GGG | + | chr1_4:73104201-73104220 | Msa0183980:three_prime_UTR | 25.0% |
| TTAAAACTATGCAGAAACAC+AGG | + | chr1_4:73101653-73101672 | Msa0183980:intron | 30.0% | |
| CACCAAATCAAAAATGATCT+TGG | + | chr1_4:73101731-73101750 | Msa0183980:CDS | 30.0% | |
| !! | TGCCAAGATCATTTTTGATT+TGG | - | chr1_4:73101736-73101755 | None:intergenic | 30.0% |
| ! | CCGTGTTTCGATTAATTTTA+AGG | + | chr1_4:73101854-73101873 | Msa0183980:intron | 30.0% |
| AAATGTTACAAGGTTCAAAG+TGG | + | chr1_4:73101978-73101997 | Msa0183980:CDS | 30.0% | |
| AATGTTACAAGGTTCAAAGT+GGG | + | chr1_4:73101979-73101998 | Msa0183980:CDS | 30.0% | |
| AATACTGTAACAAGAAGATC+TGG | + | chr1_4:73102073-73102092 | Msa0183980:CDS | 30.0% | |
| TACAATGATGTTTACACTGA+CGG | + | chr1_4:73102099-73102118 | Msa0183980:CDS | 30.0% | |
| !! | GTGTGGAATTTAATTTGACA+CGG | - | chr1_4:73102228-73102247 | None:intergenic | 30.0% |
| CAAGTTTGTATGTGATTAAC+AGG | - | chr1_4:73102488-73102507 | None:intergenic | 30.0% | |
| ! | TGCACAGTTAATTTAGTTCA+CGG | - | chr1_4:73102603-73102622 | None:intergenic | 30.0% |
| ! | TTTGTTGTGAAAATACCAGA+GGG | + | chr1_4:73102744-73102763 | Msa0183980:CDS | 30.0% |
| TTCTGATAAGAAGAAGAAAG+AGG | + | chr1_4:73102947-73102966 | Msa0183980:CDS | 30.0% | |
| CTTTCATTGCTCAAAATTGA+TGG | + | chr1_4:73103095-73103114 | Msa0183980:CDS | 30.0% | |
| TAGGTGTAACAAATTGAAGA+GGG | - | chr1_4:73103151-73103170 | None:intergenic | 30.0% | |
| ATAGGTGTAACAAATTGAAG+AGG | - | chr1_4:73103152-73103171 | None:intergenic | 30.0% | |
| !! | TCTTCAATTTGTTACACCTA+TGG | + | chr1_4:73103151-73103170 | Msa0183980:CDS | 30.0% |
| ATCATTGATGAGAAAGAAGA+AGG | - | chr1_4:73103196-73103215 | None:intergenic | 30.0% | |
| TGTCAAAGGAAGTAAATTTG+AGG | + | chr1_4:73103722-73103741 | Msa0183980:CDS | 30.0% | |
| AAGTAAATTTGAGGAGTGAA+AGG | + | chr1_4:73103731-73103750 | Msa0183980:exon | 30.0% | |
| AGTAAATTTGAGGAGTGAAA+GGG | + | chr1_4:73103732-73103751 | Msa0183980:exon | 30.0% | |
| ATACAATATCATGAAGAGTG+TGG | + | chr1_4:73103773-73103792 | Msa0183980:three_prime_UTR | 30.0% | |
| ! | TTTCTCTCTTTTCTATGCTA+TGG | + | chr1_4:73103838-73103857 | Msa0183980:three_prime_UTR | 30.0% |
| AGGTAAAGATTTGTCAAAGT+AGG | - | chr1_4:73104089-73104108 | None:intergenic | 30.0% | |
| GTTTCAAATATTAGGTAAGC+AGG | - | chr1_4:73104109-73104128 | None:intergenic | 30.0% | |
| ! | GCTTACCTAATATTTGAAAC+TGG | + | chr1_4:73104109-73104128 | Msa0183980:three_prime_UTR | 30.0% |
| ATGTCCCAGTTTCAAATATT+AGG | - | chr1_4:73104117-73104136 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTCATGATTGCTT+AGG | + | chr1_4:73104200-73104219 | Msa0183980:three_prime_UTR | 30.0% |
| ACCAGAGAACACAAAAACAT+GGG | + | chr1_4:73101419-73101438 | Msa0183980:exon | 35.0% | |
| AGAAAGAACAACAGTAGGAT+TGG | + | chr1_4:73101457-73101476 | Msa0183980:CDS | 35.0% | |
| AGAAGTTAACATACATACCC+AGG | - | chr1_4:73101779-73101798 | None:intergenic | 35.0% | |
| TTATTATGTCCGGTGTTTGT+TGG | + | chr1_4:73101825-73101844 | Msa0183980:intron | 35.0% | |
| TTGAAAAAACAGGCATGAAG+TGG | + | chr1_4:73101930-73101949 | Msa0183980:intron | 35.0% | |
| TTCAAAGTGGGAGAAATTGT+GGG | + | chr1_4:73101991-73102010 | Msa0183980:CDS | 35.0% | |
| TCAGAAATGCATAAAACGTG+TGG | - | chr1_4:73102245-73102264 | None:intergenic | 35.0% | |
| !! | GTTTGTTGTGAAAATACCAG+AGG | + | chr1_4:73102743-73102762 | Msa0183980:CDS | 35.0% |
| ! | TACAGTCCACTTTCACATTT+TGG | + | chr1_4:73102816-73102835 | Msa0183980:CDS | 35.0% |
| ! | ACAGTCCACTTTCACATTTT+GGG | + | chr1_4:73102817-73102836 | Msa0183980:CDS | 35.0% |
| TTGTTAGCTCAGATACTGTT+GGG | + | chr1_4:73103000-73103019 | Msa0183980:CDS | 35.0% | |
| ATGAAAGATAAGGCTCAAGA+GGG | - | chr1_4:73103082-73103101 | None:intergenic | 35.0% | |
| AATGAAAGATAAGGCTCAAG+AGG | - | chr1_4:73103083-73103102 | None:intergenic | 35.0% | |
| TGATGGGAAATTGATCTTGA+TGG | + | chr1_4:73103112-73103131 | Msa0183980:CDS | 35.0% | |
| GATGGGAAATTGATCTTGAT+GGG | + | chr1_4:73103113-73103132 | Msa0183980:CDS | 35.0% | |
| AGGTGTAACAAATTGAAGAG+GGG | - | chr1_4:73103150-73103169 | None:intergenic | 35.0% | |
| TTGATGAGAAAGAAGAAGGT+GGG | - | chr1_4:73103192-73103211 | None:intergenic | 35.0% | |
| ATTGATGAGAAAGAAGAAGG+TGG | - | chr1_4:73103193-73103212 | None:intergenic | 35.0% | |
| TATTGATGTTGTGTTGCGTA+GGG | + | chr1_4:73103526-73103545 | Msa0183980:intron | 35.0% | |
| ! | TCAATTACTGGAAGCTTTGT+TGG | + | chr1_4:73103555-73103574 | Msa0183980:CDS | 35.0% |
| !! | CAATTACTGGAAGCTTTGTT+GGG | + | chr1_4:73103556-73103575 | Msa0183980:CDS | 35.0% |
| !!! | TTGGAGTTTTGGAAAGAGAA+GGG | + | chr1_4:73103603-73103622 | Msa0183980:CDS | 35.0% |
| AGAAGAATGATGTGAGGTAT+AGG | + | chr1_4:73103688-73103707 | Msa0183980:CDS | 35.0% | |
| CTGTGCGTAAAAAACTAAAG+AGG | - | chr1_4:73104374-73104393 | None:intergenic | 35.0% | |
| !!! | CTCTTTAGTTTTTTACGCAC+AGG | + | chr1_4:73104372-73104391 | Msa0183980:three_prime_UTR | 35.0% |
| AAAACAGTGCAAACGTGAGT+GGG | - | chr1_4:73101363-73101382 | None:intergenic | 40.0% | |
| GACCAGAGAACACAAAAACA+TGG | + | chr1_4:73101418-73101437 | Msa0183980:exon | 40.0% | |
| !! | ACCCATGTTTTTGTGTTCTC+TGG | - | chr1_4:73101423-73101442 | None:intergenic | 40.0% |
| TGTGTATGGAGTGAGAATTC+CGG | - | chr1_4:73101498-73101517 | None:intergenic | 40.0% | |
| TGGCATGTCCAATTATCCTA+TGG | + | chr1_4:73101751-73101770 | Msa0183980:CDS | 40.0% | |
| TCCAATTATCCTATGGTTCC+TGG | + | chr1_4:73101758-73101777 | Msa0183980:CDS | 40.0% | |
| CCAATTATCCTATGGTTCCT+GGG | + | chr1_4:73101759-73101778 | Msa0183980:CDS | 40.0% | |
| AAAAACAGGCATGAAGTGGT+TGG | + | chr1_4:73101934-73101953 | Msa0183980:intron | 40.0% | |
| ! | AGGTGGGTTCAAATGTTACA+AGG | + | chr1_4:73101968-73101987 | Msa0183980:CDS | 40.0% |
| GTTCAAAGTGGGAGAAATTG+TGG | + | chr1_4:73101990-73102009 | Msa0183980:CDS | 40.0% | |
| !! | TTACTTTTGTTCAACGACGG+TGG | - | chr1_4:73102154-73102173 | None:intergenic | 40.0% |
| TGTTTGGGGATATTACTGTC+AGG | + | chr1_4:73102721-73102740 | Msa0183980:intron | 40.0% | |
| TGTGAAAATACCAGAGGGAT+TGG | + | chr1_4:73102749-73102768 | Msa0183980:CDS | 40.0% | |
| TTCAGCCCAAAATGTGAAAG+TGG | - | chr1_4:73102825-73102844 | None:intergenic | 40.0% | |
| ! | ATTTTGGGCTGAAAACACCT+GGG | + | chr1_4:73102832-73102851 | Msa0183980:CDS | 40.0% |
| !! | GTGAAAGTAGCAAAGGCATT+AGG | + | chr1_4:73102900-73102919 | Msa0183980:CDS | 40.0% |
| AAGAGCTTATCACAGTGACA+TGG | - | chr1_4:73102929-73102948 | None:intergenic | 40.0% | |
| CTTGTTAGCTCAGATACTGT+TGG | + | chr1_4:73102999-73103018 | Msa0183980:CDS | 40.0% | |
| ATCATTGACACTGTTCCTGT+TGG | + | chr1_4:73103053-73103072 | Msa0183980:CDS | 40.0% | |
| ! | GTTTTACCTAGCATGACCAT+AGG | - | chr1_4:73103170-73103189 | None:intergenic | 40.0% |
| CTATTGATGTTGTGTTGCGT+AGG | + | chr1_4:73103525-73103544 | Msa0183980:intron | 40.0% | |
| !!! | GTTGGAGTTTTGGAAAGAGA+AGG | + | chr1_4:73103602-73103621 | Msa0183980:CDS | 40.0% |
| GATTGGAGAAGAATGATGTG+AGG | + | chr1_4:73103682-73103701 | Msa0183980:CDS | 40.0% | |
| ACTCTCGTTCTCAAAAGAGT+TGG | - | chr1_4:73104014-73104033 | None:intergenic | 40.0% | |
| ! | AGTCGTGTTTGCTTTGCTTT+TGG | + | chr1_4:73104031-73104050 | Msa0183980:three_prime_UTR | 40.0% |
| !! | TTTGCTTTTGGTCGTGTTGA+TGG | + | chr1_4:73104043-73104062 | Msa0183980:three_prime_UTR | 40.0% |
| CATGATTGCTTAGGGAATGA+AGG | + | chr1_4:73104209-73104228 | Msa0183980:three_prime_UTR | 40.0% | |
| !! | TAGGGAATGAAGGTATTGCA+TGG | + | chr1_4:73104219-73104238 | Msa0183980:three_prime_UTR | 40.0% |
| !! | AGGGAATGAAGGTATTGCAT+GGG | + | chr1_4:73104220-73104239 | Msa0183980:three_prime_UTR | 40.0% |
| TCCGTCCTATGTTATTCCAA+CGG | + | chr1_4:73104250-73104269 | Msa0183980:three_prime_UTR | 40.0% | |
| AAGTCCCGTTGGAATAACAT+AGG | - | chr1_4:73104258-73104277 | None:intergenic | 40.0% | |
| GTGAGTATAATAAGTCCCGT+TGG | - | chr1_4:73104269-73104288 | None:intergenic | 40.0% | |
| GAAAACAGTGCAAACGTGAG+TGG | - | chr1_4:73101364-73101383 | None:intergenic | 45.0% | |
| GCTGCAGAAAGAACAACAGT+AGG | + | chr1_4:73101452-73101471 | Msa0183980:CDS | 45.0% | |
| ATGGAGTGAGAATTCCGGAA+GGG | - | chr1_4:73101493-73101512 | None:intergenic | 45.0% | |
| TATGGAGTGAGAATTCCGGA+AGG | - | chr1_4:73101494-73101513 | None:intergenic | 45.0% | |
| CTCCATACACATACACTCTC+AGG | + | chr1_4:73101507-73101526 | Msa0183980:CDS | 45.0% | |
| ! | CACCTGAGAGTGTATGTGTA+TGG | - | chr1_4:73101512-73101531 | None:intergenic | 45.0% |
| ACTATGCAGAAACACAGGAC+CGG | + | chr1_4:73101658-73101677 | Msa0183980:intron | 45.0% | |
| CCCAGGAACCATAGGATAAT+TGG | - | chr1_4:73101762-73101781 | None:intergenic | 45.0% | |
| CATACATACCCAGGAACCAT+AGG | - | chr1_4:73101770-73101789 | None:intergenic | 45.0% | |
| CGGACATATCCAACAAACAC+CGG | - | chr1_4:73101837-73101856 | None:intergenic | 45.0% | |
| ACTGACGGAAAGATCACTCA+GGG | + | chr1_4:73102114-73102133 | Msa0183980:CDS | 45.0% | |
| ! | AACAATGGTGCAACTTGCTC+TGG | - | chr1_4:73102777-73102796 | None:intergenic | 45.0% |
| ! | CATTTTGGGCTGAAAACACC+TGG | + | chr1_4:73102831-73102850 | Msa0183980:CDS | 45.0% |
| AATATTCCACCTCTTAGCCC+AGG | - | chr1_4:73102852-73102871 | None:intergenic | 45.0% | |
| TGGGCTAAGAGGTGGAATAT+TGG | + | chr1_4:73102851-73102870 | Msa0183980:CDS | 45.0% | |
| GGGCTAAGAGGTGGAATATT+GGG | + | chr1_4:73102852-73102871 | Msa0183980:CDS | 45.0% | |
| AGAGGTGGAATATTGGGTCT+TGG | + | chr1_4:73102858-73102877 | Msa0183980:CDS | 45.0% | |
| ATATTGGGTCTTGGTGGAGT+AGG | + | chr1_4:73102867-73102886 | Msa0183980:CDS | 45.0% | |
| !! | GAAGAAGAAAGAGGCACTTG+AGG | + | chr1_4:73102956-73102975 | Msa0183980:CDS | 45.0% |
| !! | AAAGAGGCACTTGAGGATCT+TGG | + | chr1_4:73102963-73102982 | Msa0183980:CDS | 45.0% |
| GTTACACCTATGGTCATGCT+AGG | + | chr1_4:73103161-73103180 | Msa0183980:CDS | 45.0% | |
| GTAGGGAGGAAGTCAATTAC+TGG | + | chr1_4:73103543-73103562 | Msa0183980:intron | 45.0% | |
| ! | CAGAGGAGATGTTGGAGTTT+TGG | + | chr1_4:73103592-73103611 | Msa0183980:CDS | 45.0% |
| TGTGAGGTATAGGTTCGTTG+TGG | + | chr1_4:73103698-73103717 | Msa0183980:CDS | 45.0% | |
| AGGTTCGTTGTGGATGTCAA+AGG | + | chr1_4:73103708-73103727 | Msa0183980:CDS | 45.0% | |
| TGGCATTTGGCATACGTGTA+TGG | - | chr1_4:73104155-73104174 | None:intergenic | 45.0% | |
| CCCGTTGGAATAACATAGGA+CGG | - | chr1_4:73104254-73104273 | None:intergenic | 45.0% | |
| CCGTCCTATGTTATTCCAAC+GGG | + | chr1_4:73104251-73104270 | Msa0183980:three_prime_UTR | 45.0% | |
| !!! | TAAACTTTTTTTTTTTAATT+TGG | + | chr1_4:73103319-73103338 | Msa0183980:intron | 5.0% |
| !!! | TTTTTAAATAATTTATGTTT+AGG | - | chr1_4:73103391-73103410 | None:intergenic | 5.0% |
| ! | CGTGAGTGGGTTTGGTTAGT+GGG | - | chr1_4:73101350-73101369 | None:intergenic | 50.0% |
| ! | ACGTGAGTGGGTTTGGTTAG+TGG | - | chr1_4:73101351-73101370 | None:intergenic | 50.0% |
| ! | AGTGCAAACGTGAGTGGGTT+TGG | - | chr1_4:73101358-73101377 | None:intergenic | 50.0% |
| TTGGCTGCAAAAGACCCTTC+CGG | + | chr1_4:73101476-73101495 | Msa0183980:CDS | 50.0% | |
| !! | AGTGGTTGGTGAGGTACTAG+AGG | + | chr1_4:73101948-73101967 | Msa0183980:CDS | 50.0% |
| ! | GTTGGTGAGGTACTAGAGGT+GGG | + | chr1_4:73101952-73101971 | Msa0183980:CDS | 50.0% |
| GTGGGAGAAATTGTGGGAGT+TGG | + | chr1_4:73101997-73102016 | Msa0183980:CDS | 50.0% | |
| CACTGACGGAAAGATCACTC+AGG | + | chr1_4:73102113-73102132 | Msa0183980:CDS | 50.0% | |
| GTTGCACCATTGTTGTGTGC+AGG | + | chr1_4:73102783-73102802 | Msa0183980:CDS | 50.0% | |
| GTCACACCTGCACACAACAA+TGG | - | chr1_4:73102792-73102811 | None:intergenic | 50.0% | |
| CTGAAAACACCTGGGCTAAG+AGG | + | chr1_4:73102840-73102859 | Msa0183980:CDS | 50.0% | |
| AAAACACCTGGGCTAAGAGG+TGG | + | chr1_4:73102843-73102862 | Msa0183980:CDS | 50.0% | |
| GGTGGAATATTGGGTCTTGG+TGG | + | chr1_4:73102861-73102880 | Msa0183980:CDS | 50.0% | |
| TCTTGGTGGAGTAGGACACA+TGG | + | chr1_4:73102875-73102894 | Msa0183980:CDS | 50.0% | |
| CTTGGTGGAGTAGGACACAT+GGG | + | chr1_4:73102876-73102895 | Msa0183980:CDS | 50.0% | |
| TTGGTGGAGTAGGACACATG+GGG | + | chr1_4:73102877-73102896 | Msa0183980:CDS | 50.0% | |
| CATGGGGGTGAAAGTAGCAA+AGG | + | chr1_4:73102893-73102912 | Msa0183980:CDS | 50.0% | |
| TGATGTTGTGTTGCGTAGGG+AGG | + | chr1_4:73103529-73103548 | Msa0183980:intron | 50.0% | |
| !! | AAGCTTTGTTGGGAGCGTGA+AGG | + | chr1_4:73103566-73103585 | Msa0183980:CDS | 50.0% |
| GAAGGAGACAGAGGAGATGT+TGG | + | chr1_4:73103584-73103603 | Msa0183980:CDS | 50.0% | |
| ! | CAGGCATGAAGTGGTTGGTG+AGG | + | chr1_4:73101939-73101958 | Msa0183980:intron | 55.0% |
| !! | GGTTGGTGAGGTACTAGAGG+TGG | + | chr1_4:73101951-73101970 | Msa0183980:CDS | 55.0% |
| !! | GTGGGAGTTGGTCTTCTCGT+TGG | + | chr1_4:73102009-73102028 | Msa0183980:CDS | 55.0% |
| GACGGAAAGATCACTCAGGG+TGG | + | chr1_4:73102117-73102136 | Msa0183980:CDS | 55.0% | |
| TGGTGGAGTAGGACACATGG+GGG | + | chr1_4:73102878-73102897 | Msa0183980:CDS | 55.0% | |
| ! | TGCTCTGGTGCCAATCCCTC+TGG | - | chr1_4:73102762-73102781 | None:intergenic | 60.0% |
| GGCTCAAGAGGGTGACCAAC+AGG | - | chr1_4:73103071-73103090 | None:intergenic | 60.0% | |
| ! | TGGGAGCGTGAAGGAGACAG+AGG | + | chr1_4:73103575-73103594 | Msa0183980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73101347 | 73104446 | 73101347 | ID=Msa0183980;Name=Msa0183980 |
| chr1_4 | mRNA | 73101347 | 73104446 | 73101347 | ID=Msa0183980-mRNA-1;Parent=Msa0183980;Name=Msa0183980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|5|697|358 |
| chr1_4 | exon | 73101347 | 73101528 | 73101347 | ID=Msa0183980-mRNA-1:exon:24772;Parent=Msa0183980-mRNA-1 |
| chr1_4 | exon | 73101667 | 73101780 | 73101667 | ID=Msa0183980-mRNA-1:exon:24773;Parent=Msa0183980-mRNA-1 |
| chr1_4 | exon | 73101942 | 73102169 | 73101942 | ID=Msa0183980-mRNA-1:exon:24774;Parent=Msa0183980-mRNA-1 |
| chr1_4 | exon | 73102743 | 73103182 | 73102743 | ID=Msa0183980-mRNA-1:exon:24775;Parent=Msa0183980-mRNA-1 |
| chr1_4 | exon | 73103547 | 73104446 | 73103547 | ID=Msa0183980-mRNA-1:exon:24776;Parent=Msa0183980-mRNA-1 |
| chr1_4 | five_prime_UTR | 73101347 | 73101436 | 73101347 | ID=Msa0183980-mRNA-1:five_prime_utr;Parent=Msa0183980-mRNA-1 |
| chr1_4 | CDS | 73101437 | 73101528 | 73101437 | ID=Msa0183980-mRNA-1:cds;Parent=Msa0183980-mRNA-1 |
| chr1_4 | CDS | 73101667 | 73101780 | 73101667 | ID=Msa0183980-mRNA-1:cds;Parent=Msa0183980-mRNA-1 |
| chr1_4 | CDS | 73101942 | 73102169 | 73101942 | ID=Msa0183980-mRNA-1:cds;Parent=Msa0183980-mRNA-1 |
| chr1_4 | CDS | 73102743 | 73103182 | 73102743 | ID=Msa0183980-mRNA-1:cds;Parent=Msa0183980-mRNA-1 |
| chr1_4 | CDS | 73103547 | 73103749 | 73103547 | ID=Msa0183980-mRNA-1:cds;Parent=Msa0183980-mRNA-1 |
| chr1_4 | three_prime_UTR | 73103750 | 73104446 | 73103750 | ID=Msa0183980-mRNA-1:three_prime_utr;Parent=Msa0183980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
