AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808100 MtrunA17_Chr5g0423001 78.261 230 12 1 107 336 1 192 3.67e-114 342
Msa0808100 MtrunA17_Chr5g0423021 93.878 98 5 1 1 98 1 97 4.61e-58 183
Msa0808100 MtrunA17_Chr3g0101951 34.713 314 172 7 24 308 17 326 1.71e-49 176
Msa0808100 MtrunA17_Chr2g0290351 33.333 297 177 5 16 291 2 298 1.17e-48 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808100 AT1G68580.4 43.963 323 161 6 7 322 1 310 9.27e-81 256
Msa0808100 AT1G68580.2 43.963 323 161 6 7 322 1 310 1.26e-79 256
Msa0808100 AT1G68580.1 51.323 189 91 1 134 322 27 214 1.13e-62 206
Msa0808100 AT1G68580.3 51.323 189 91 1 134 322 27 214 1.00e-61 207
Msa0808100 AT1G68580.5 51.323 189 91 1 134 322 77 264 2.24e-61 207
Msa0808100 AT5G55600.2 37.584 298 155 9 19 288 3 297 8.90e-47 169
Msa0808100 AT5G55600.1 37.584 298 155 9 19 288 3 297 8.90e-47 169
Msa0808100 AT5G55600.3 37.584 298 155 9 19 288 3 297 8.90e-47 169

Find 87 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTGAAATTCAATTA+TGG 0.216067 5_3:-31849495 Msa0808100:exon
AGAGAGGGAGGGGTTTGAAT+TGG 0.228301 5_3:+31849529 None:intergenic
TAACTCAAATGGAGGGTTAT+TGG 0.262495 5_3:-31847541 Msa0808100:CDS
GATTTATAGAGAGGGGTTCT+AGG 0.265515 5_3:+31849552 None:intergenic
ACCTTCAATGTTCCAATATC+AGG 0.270568 5_3:+31848455 None:intergenic
GAATTGGATCTTGCTCTTAT+TGG 0.272650 5_3:-31849326 Msa0808100:CDS
GTACACCGTTGCTTCTTCTT+TGG 0.272996 5_3:+31847398 None:intergenic
AGATTCAAGCTCCATAAGTT+TGG 0.274866 5_3:-31846740 Msa0808100:CDS
TTCTTCCAGGGATGCGAATA+TGG 0.275980 5_3:-31848501 Msa0808100:CDS
GGTTTCGAGATCTGAGAATA+AGG 0.278971 5_3:+31849574 None:intergenic
CAAACGTCTGGTTGCCTACT+TGG 0.316619 5_3:-31847843 Msa0808100:CDS
TACAACCATCTTGTTGCCTT+TGG 0.316887 5_3:+31847802 None:intergenic
TCGAGCTTTGTTCCGGTACT+TGG 0.319281 5_3:+31847631 None:intergenic
GAGAGGGAGGGGTTTGAATT+GGG 0.321559 5_3:+31849530 None:intergenic
TCAAAAGAATTCACATGGTT+AGG 0.322137 5_3:-31848292 Msa0808100:CDS
CATGATTATGAACCTGATAT+TGG 0.327940 5_3:-31848467 Msa0808100:CDS
TTGCTGCACACAAATGGTTC+TGG 0.335465 5_3:+31847599 None:intergenic
GAAGAAGAAAAGTGGTGAAT+TGG 0.337606 5_3:-31849342 Msa0808100:CDS
TCAAACTCTAGTGGTAGTTC+AGG 0.347687 5_3:-31847479 Msa0808100:CDS
CGCGTACACAAGTTGTTCAT+TGG 0.350880 5_3:-31849223 Msa0808100:CDS
GATTCAAGCTCCATAAGTTT+GGG 0.370665 5_3:-31846739 Msa0808100:CDS
CTGAGTATTGAATGCATAGA+TGG 0.388591 5_3:-31847686 Msa0808100:CDS
TATGGCTTTGAAAGAGAGAT+TGG 0.390667 5_3:-31849477 Msa0808100:CDS
CAAAAGAATTCACATGGTTA+GGG 0.399435 5_3:-31848291 Msa0808100:CDS
GAGCGTGTCGAGCTTTGTTC+CGG 0.399625 5_3:+31847624 None:intergenic
TTGGTAAAGAGAAAAGTTCT+AGG 0.400283 5_3:-31849307 Msa0808100:CDS
TTCAATTTCAGAAGAGAGAG+AGG 0.403168 5_3:+31849513 None:intergenic
TTTGTGTGCAGCAAGAAGTT+TGG 0.403509 5_3:-31847590 Msa0808100:CDS
GAAAAGAAGAAACCACTATC+AGG 0.405020 5_3:-31848251 Msa0808100:CDS
ATCTGATGATGGACCAGAAC+TGG 0.408102 5_3:-31847453 Msa0808100:CDS
AATGGAGGGTTATTGGAAAC+AGG 0.412358 5_3:-31847534 Msa0808100:CDS
AAATTCGTTTCGATGGATAA+AGG 0.413265 5_3:-31849389 Msa0808100:CDS
TTGAATTGGGATTTATAGAG+AGG 0.424740 5_3:+31849543 None:intergenic
AACTTCTTGCTGCACACAAA+TGG 0.429204 5_3:+31847593 None:intergenic
TTCAGAAGAGAGAGAGGGAG+GGG 0.430658 5_3:+31849519 None:intergenic
GTCTTATCGCAGAAGAAGAA+TGG 0.435159 5_3:+31847420 None:intergenic
ATTTATAGAGAGGGGTTCTA+GGG 0.436632 5_3:+31849553 None:intergenic
TCTTCCGAAAAGCCTGATAG+TGG 0.450889 5_3:+31848239 None:intergenic
AGCAGAGGAGAACAAACGTC+TGG 0.475317 5_3:-31847855 Msa0808100:CDS
TCGTTCTCCCGATCACAATT+CGG 0.476461 5_3:-31846770 Msa0808100:CDS
CACAGCCATATTCGCATCCC+TGG 0.478537 5_3:+31848496 None:intergenic
ACAAGATGGTTGTAGTTCGC+TGG 0.484731 5_3:-31847793 Msa0808100:CDS
ATACTCAGACGTTGAAGATA+AGG 0.493320 5_3:+31847701 None:intergenic
TGGTTAGATTCTATTGTTCA+AGG 0.498161 5_3:-31849203 Msa0808100:intron
CTCTCTTTCACTAAAACTGT+GGG 0.505684 5_3:+31847736 None:intergenic
TTTCACAGAATTGATGAGGT+TGG 0.514249 5_3:-31847770 Msa0808100:CDS
ACCTGATATTGGAACATTGA+AGG 0.521621 5_3:-31848456 Msa0808100:intron
GGAAGAGAAATTCGTTTCGA+TGG 0.530586 5_3:-31849396 Msa0808100:CDS
CACAGCACTACGCCAAGTAC+CGG 0.531875 5_3:-31847643 Msa0808100:CDS
CCTCTCTTTCACTAAAACTG+TGG 0.537595 5_3:+31847735 None:intergenic
GTTTCGAGATCTGAGAATAA+GGG 0.539870 5_3:+31849575 None:intergenic
GAACCGTCCGAATTGTGATC+GGG 0.542383 5_3:+31846763 None:intergenic
CGGTACTTGGCGTAGTGCTG+TGG 0.549279 5_3:+31847644 None:intergenic
CTGGTTTCACAGAATTGATG+AGG 0.549883 5_3:-31847774 Msa0808100:CDS
TGAATTGGGATTTATAGAGA+GGG 0.551070 5_3:+31849544 None:intergenic
TTTCAGAAGAGAGAGAGGGA+GGG 0.555127 5_3:+31849518 None:intergenic
CAAACTCTAGTGGTAGTTCA+GGG 0.555530 5_3:-31847478 Msa0808100:CDS
GTTTGGTAAGGATGATGTCA+AGG 0.560830 5_3:-31847573 Msa0808100:CDS
TGAACCGTCCGAATTGTGAT+CGG 0.568015 5_3:+31846762 None:intergenic
CTTGTTCAAAAGAATTCACA+TGG 0.576061 5_3:-31848297 Msa0808100:CDS
ATTTCAGAAGAGAGAGAGGG+AGG 0.579702 5_3:+31849517 None:intergenic
TCACATGGTTAGGGTTACCC+TGG 0.580451 5_3:-31848282 Msa0808100:CDS
ATATTCGCATCCCTGGAAGA+AGG 0.585281 5_3:+31848503 None:intergenic
TTTGATATAACTCAAATGGA+GGG 0.591359 5_3:-31847548 Msa0808100:CDS
TCAATTTCAGAAGAGAGAGA+GGG 0.594745 5_3:+31849514 None:intergenic
TAGGGTTACCCTGGACATGT+AGG 0.595952 5_3:-31848273 Msa0808100:CDS
AGTTCAGGGAAATCTGATGA+TGG 0.598540 5_3:-31847464 Msa0808100:CDS
CTCGTACATGTCTTCCAAGT+AGG 0.600078 5_3:+31847829 None:intergenic
CACTAGAGTTTGACTCCACG+TGG 0.600930 5_3:+31847489 None:intergenic
GACATGTACGAGGGTTCCAA+AGG 0.601793 5_3:-31847818 Msa0808100:CDS
GAATTGGGATTTATAGAGAG+GGG 0.611405 5_3:+31849545 None:intergenic
GGGTTCCAAAGGCAACAAGA+TGG 0.630417 5_3:-31847807 Msa0808100:CDS
GAAGAAGCAACGGTGTACAA+AGG 0.632099 5_3:-31847393 Msa0808100:intron
TCTCCCGATCACAATTCGGA+CGG 0.632395 5_3:-31846766 Msa0808100:CDS
GTGCAGCAAGAAGTTTGGTA+AGG 0.632888 5_3:-31847585 Msa0808100:CDS
TGGCGTAGTGCTGTGGACTG+AGG 0.634382 5_3:+31847651 None:intergenic
CACGTGGAGTCAAACTCTAG+TGG 0.647874 5_3:-31847488 Msa0808100:CDS
CTAGAGTTTGACTCCACGTG+GGG 0.651840 5_3:+31847491 None:intergenic
TAAGACCAAAGAAGAAGCAA+CGG 0.657790 5_3:-31847403 Msa0808100:CDS
GATGGATAAAGGTAGAAGAG+AGG 0.667192 5_3:-31849378 Msa0808100:CDS
CTACTTGGAAGACATGTACG+AGG 0.672183 5_3:-31847828 Msa0808100:CDS
TTATCGCAGAAGAAGAATGG+AGG 0.692820 5_3:+31847423 None:intergenic
ACTAGAGTTTGACTCCACGT+GGG 0.704632 5_3:+31847490 None:intergenic
TACTTGGAAGACATGTACGA+GGG 0.709651 5_3:-31847827 Msa0808100:CDS
GTAGTGCTGTGGACTGAGGA+CGG 0.713773 5_3:+31847655 None:intergenic
TCTCTTTCACTAAAACTGTG+GGG 0.748073 5_3:+31847737 None:intergenic
GAAGCAAATGTATCCCCACG+TGG 0.785568 5_3:-31847504 Msa0808100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAATAAATTTTTATA+TGG + chr5_3:31847578-31847597 None:intergenic 0.0%
!! TAAGATTATTAATTAAGAAA+AGG + chr5_3:31847283-31847302 None:intergenic 10.0%
!! TTTGATACAAAATTAATATA+GGG + chr5_3:31847925-31847944 None:intergenic 10.0%
!! ATTTGATACAAAATTAATAT+AGG + chr5_3:31847926-31847945 None:intergenic 10.0%
!! AGAATTATTTAAAAAAAAGA+GGG + chr5_3:31848131-31848150 None:intergenic 10.0%
!! TTGAAATTGAAATTCAATTA+TGG - chr5_3:31846811-31846830 Msa0808100:intron 15.0%
!! TAATTCGTTAATTGTTAATT+CGG - chr5_3:31847367-31847386 Msa0808100:intron 15.0%
!!! TTATTCTATTTTGTTTTTTC+AGG - chr5_3:31847962-31847981 Msa0808100:intron 15.0%
!! CAGAATTATTTAAAAAAAAG+AGG + chr5_3:31848132-31848151 None:intergenic 15.0%
!!! TATCTCTGTTTTTTTTTTTT+TGG - chr5_3:31848322-31848341 Msa0808100:CDS 15.0%
!!! TTTTAATGTTTACAGAATAA+AGG + chr5_3:31849252-31849271 None:intergenic 15.0%
!! ACTAAATTGTAAAACATAAA+AGG - chr5_3:31849400-31849419 Msa0808100:CDS 15.0%
!!! GTTAATTTGAATCTTAATTC+TGG - chr5_3:31847224-31847243 Msa0808100:intron 20.0%
!! AATTAAGAAAAGGATGAAAA+AGG + chr5_3:31847273-31847292 None:intergenic 20.0%
!! GAAAAATGAATCTCAAATTA+AGG + chr5_3:31847334-31847353 None:intergenic 20.0%
!! AATTCGTTAATTGTTAATTC+GGG - chr5_3:31847368-31847387 Msa0808100:intron 20.0%
!!! TGTATTTAGTGTTTATTTTG+TGG - chr5_3:31847426-31847445 Msa0808100:CDS 20.0%
!!! TTGTTTATTAGTGTTTTCAT+TGG - chr5_3:31847601-31847620 Msa0808100:CDS 20.0%
!!! GCAAAGATTTTTTTTATTGT+TGG + chr5_3:31848279-31848298 None:intergenic 20.0%
!!! TGTGGTTTTATTGAATAATT+AGG - chr5_3:31849319-31849338 Msa0808100:CDS 20.0%
!! TGCAATAATTAAATATTGAG+TGG - chr5_3:31849431-31849450 Msa0808100:CDS 20.0%
!!! TATTTTCTGAAGAAGAAAAG+TGG - chr5_3:31846956-31846975 Msa0808100:intron 25.0%
!! TGCTTTCTTTTACCTAATTT+TGG - chr5_3:31847143-31847162 Msa0808100:intron 25.0%
!! TTTTCGAAAGAACCAAAATT+AGG + chr5_3:31847158-31847177 None:intergenic 25.0%
!! TATTAGTGTTTTCATTGGAT+AGG - chr5_3:31847606-31847625 Msa0808100:CDS 25.0%
! TTAATATGAGAAGAGATTCA+AGG + chr5_3:31847658-31847677 None:intergenic 25.0%
!!! CTTTTTTCAGTTTTGTTTTC+TGG - chr5_3:31847712-31847731 Msa0808100:CDS 25.0%
!! ATGTGAATTCTTTTGAACAA+GGG + chr5_3:31848010-31848029 None:intergenic 25.0%
!! ATGTGTAAATCATTTTACAC+TGG + chr5_3:31848163-31848182 None:intergenic 25.0%
!!! GGATTTTGATATAACTCAAA+TGG - chr5_3:31848754-31848773 Msa0808100:intron 25.0%
!! TTTTGATATAACTCAAATGG+AGG - chr5_3:31848757-31848776 Msa0808100:intron 25.0%
! TTTGATATAACTCAAATGGA+GGG - chr5_3:31848758-31848777 Msa0808100:intron 25.0%
! TTTACAGAATAAAGGATACT+AGG + chr5_3:31849244-31849263 None:intergenic 25.0%
! AAAAATCATTTGATACTCTG+TGG - chr5_3:31849301-31849320 Msa0808100:CDS 25.0%
!!! TTGTTTTTCTACCACATAAA+CGG + chr5_3:31849507-31849526 None:intergenic 25.0%
TGAATTGGGATTTATAGAGA+GGG + chr5_3:31846765-31846784 None:intergenic 30.0%
TTGAATTGGGATTTATAGAG+AGG + chr5_3:31846766-31846785 None:intergenic 30.0%
ATGAAAAAAGATACGTTACG+TGG - chr5_3:31846888-31846907 Msa0808100:intron 30.0%
TGAAAAAAGATACGTTACGT+GGG - chr5_3:31846889-31846908 Msa0808100:intron 30.0%
AAATTCGTTTCGATGGATAA+AGG - chr5_3:31846917-31846936 Msa0808100:intron 30.0%
TTGGTAAAGAGAAAAGTTCT+AGG - chr5_3:31846999-31847018 Msa0808100:intron 30.0%
CGCGATTTAAGTCTAAAAAA+AGG + chr5_3:31847067-31847086 None:intergenic 30.0%
TGGTTAGATTCTATTGTTCA+AGG - chr5_3:31847103-31847122 Msa0808100:intron 30.0%
!!! TGGTTTTGTATCACTGATTT+TGG - chr5_3:31847486-31847505 Msa0808100:CDS 30.0%
!!! GTATCACTGATTTTGGTTTA+TGG - chr5_3:31847493-31847512 Msa0808100:CDS 30.0%
CATGATTATGAACCTGATAT+TGG - chr5_3:31847839-31847858 Msa0808100:CDS 30.0%
! CATGTGAATTCTTTTGAACA+AGG + chr5_3:31848011-31848030 None:intergenic 30.0%
CTTGTTCAAAAGAATTCACA+TGG - chr5_3:31848009-31848028 Msa0808100:intron 30.0%
TCAAAAGAATTCACATGGTT+AGG - chr5_3:31848014-31848033 Msa0808100:intron 30.0%
CAAAAGAATTCACATGGTTA+GGG - chr5_3:31848015-31848034 Msa0808100:intron 30.0%
ACTAACTAACAGATTGTGAT+TGG + chr5_3:31848191-31848210 None:intergenic 30.0%
CAATCTGTTAGTTAGTTGTA+TGG - chr5_3:31848195-31848214 Msa0808100:intron 30.0%
GTCAGATTACAATACATTTG+AGG + chr5_3:31848361-31848380 None:intergenic 30.0%
!!! TTTTGTGTTTGTTTTAGCAG+AGG - chr5_3:31848436-31848455 Msa0808100:intron 30.0%
TTCACATCTTTCTTACTAGT+AGG - chr5_3:31849081-31849100 Msa0808100:intron 30.0%
TAGATAAGTCAAGAAAGAAG+AGG + chr5_3:31849127-31849146 None:intergenic 30.0%
CTATCTTCAAAATTTCAGCA+AGG - chr5_3:31849144-31849163 Msa0808100:intron 30.0%
! GTTTTGTGAAAGCTTTTGTT+GGG + chr5_3:31849463-31849482 None:intergenic 30.0%
!! AGTTTTGTGAAAGCTTTTGT+TGG + chr5_3:31849464-31849483 None:intergenic 30.0%
AATCAGAAATACCGTTTATG+TGG - chr5_3:31849493-31849512 Msa0808100:exon 30.0%
GTGGTAGAAAAACAAGAAAA+CGG - chr5_3:31849512-31849531 Msa0808100:five_prime_UTR 30.0%
ATTTATAGAGAGGGGTTCTA+GGG + chr5_3:31846756-31846775 None:intergenic 35.0%
GAATTGGGATTTATAGAGAG+GGG + chr5_3:31846764-31846783 None:intergenic 35.0%
TCAATTTCAGAAGAGAGAGA+GGG + chr5_3:31846795-31846814 None:intergenic 35.0%
TTCAATTTCAGAAGAGAGAG+AGG + chr5_3:31846796-31846815 None:intergenic 35.0%
!! TATGGCTTTGAAAGAGAGAT+TGG - chr5_3:31846829-31846848 Msa0808100:intron 35.0%
GAAGAAGAAAAGTGGTGAAT+TGG - chr5_3:31846964-31846983 Msa0808100:intron 35.0%
GAATTGGATCTTGCTCTTAT+TGG - chr5_3:31846980-31846999 Msa0808100:intron 35.0%
TGAAAATTTCAGAGGCAAAC+AGG + chr5_3:31847780-31847799 None:intergenic 35.0%
GAAGGATCTGAAAATTTCAG+AGG + chr5_3:31847788-31847807 None:intergenic 35.0%
! AATTTTCAGATCCTTCTTCC+AGG - chr5_3:31847792-31847811 Msa0808100:CDS 35.0%
! ATTTTCAGATCCTTCTTCCA+GGG - chr5_3:31847793-31847812 Msa0808100:CDS 35.0%
ACCTGATATTGGAACATTGA+AGG - chr5_3:31847850-31847869 Msa0808100:CDS 35.0%
ACCTTCAATGTTCCAATATC+AGG + chr5_3:31847854-31847873 None:intergenic 35.0%
GAAAAGAAGAAACCACTATC+AGG - chr5_3:31848055-31848074 Msa0808100:intron 35.0%
!! GCTTTCGCAAATTGATTTTC+AGG - chr5_3:31848406-31848425 Msa0808100:intron 35.0%
TTTCACAGAATTGATGAGGT+TGG - chr5_3:31848536-31848555 Msa0808100:intron 35.0%
TCTCTTTCACTAAAACTGTG+GGG + chr5_3:31848572-31848591 None:intergenic 35.0%
CTCTCTTTCACTAAAACTGT+GGG + chr5_3:31848573-31848592 None:intergenic 35.0%
ATACTCAGACGTTGAAGATA+AGG + chr5_3:31848608-31848627 None:intergenic 35.0%
!! CTGAGTATTGAATGCATAGA+TGG - chr5_3:31848620-31848639 Msa0808100:intron 35.0%
TAACTCAAATGGAGGGTTAT+TGG - chr5_3:31848765-31848784 Msa0808100:intron 35.0%
TAAGACCAAAGAAGAAGCAA+CGG - chr5_3:31848903-31848922 Msa0808100:intron 35.0%
AGATGTGAAGAAAGAAGAAG+CGG + chr5_3:31849070-31849089 None:intergenic 35.0%
ATAAGTCAAGAAAGAAGAGG+AGG + chr5_3:31849124-31849143 None:intergenic 35.0%
TTCAAAATTTCAGCAAGGTC+TGG - chr5_3:31849149-31849168 Msa0808100:intron 35.0%
TCAAAATTTCAGCAAGGTCT+GGG - chr5_3:31849150-31849169 Msa0808100:intron 35.0%
AGATTCAAGCTCCATAAGTT+TGG - chr5_3:31849566-31849585 Msa0808100:five_prime_UTR 35.0%
GATTCAAGCTCCATAAGTTT+GGG - chr5_3:31849567-31849586 Msa0808100:five_prime_UTR 35.0%
GGTTTCGAGATCTGAGAATA+AGG + chr5_3:31846735-31846754 None:intergenic 40.0%
GATTTATAGAGAGGGGTTCT+AGG + chr5_3:31846757-31846776 None:intergenic 40.0%
GGAAGAGAAATTCGTTTCGA+TGG - chr5_3:31846910-31846929 Msa0808100:intron 40.0%
GATGGATAAAGGTAGAAGAG+AGG - chr5_3:31846928-31846947 Msa0808100:intron 40.0%
! CTTCTTTTCCTACATGTCCA+GGG + chr5_3:31848044-31848063 None:intergenic 40.0%
! TCTTCTTTTCCTACATGTCC+AGG + chr5_3:31848045-31848064 None:intergenic 40.0%
! GAAACCACTATCAGGCTTTT+CGG - chr5_3:31848063-31848082 Msa0808100:intron 40.0%
! TATCAGGCTTTTCGGAAGAA+CGG - chr5_3:31848071-31848090 Msa0808100:intron 40.0%
AATCAATTTGCGAAAGCAGC+AGG + chr5_3:31848403-31848422 None:intergenic 40.0%
TACTTGGAAGACATGTACGA+GGG - chr5_3:31848479-31848498 Msa0808100:CDS 40.0%
TACAACCATCTTGTTGCCTT+TGG + chr5_3:31848507-31848526 None:intergenic 40.0%
CTGGTTTCACAGAATTGATG+AGG - chr5_3:31848532-31848551 Msa0808100:intron 40.0%
CCTCTCTTTCACTAAAACTG+TGG + chr5_3:31848574-31848593 None:intergenic 40.0%
!! CCACAGTTTTAGTGAAAGAG+AGG - chr5_3:31848571-31848590 Msa0808100:intron 40.0%
AACTTCTTGCTGCACACAAA+TGG + chr5_3:31848716-31848735 None:intergenic 40.0%
TTTGTGTGCAGCAAGAAGTT+TGG - chr5_3:31848716-31848735 Msa0808100:intron 40.0%
GTTTGGTAAGGATGATGTCA+AGG - chr5_3:31848733-31848752 Msa0808100:intron 40.0%
AATGGAGGGTTATTGGAAAC+AGG - chr5_3:31848772-31848791 Msa0808100:intron 40.0%
TCAAACTCTAGTGGTAGTTC+AGG - chr5_3:31848827-31848846 Msa0808100:intron 40.0%
CAAACTCTAGTGGTAGTTCA+GGG - chr5_3:31848828-31848847 Msa0808100:intron 40.0%
AGTTCAGGGAAATCTGATGA+TGG - chr5_3:31848842-31848861 Msa0808100:intron 40.0%
TTATCGCAGAAGAAGAATGG+AGG + chr5_3:31848886-31848905 None:intergenic 40.0%
GTCTTATCGCAGAAGAAGAA+TGG + chr5_3:31848889-31848908 None:intergenic 40.0%
CAAAATTTCAGCAAGGTCTG+GGG - chr5_3:31849151-31849170 Msa0808100:intron 40.0%
!! CTAGGTTGATTGAGTCTGAA+TGG + chr5_3:31849226-31849245 None:intergenic 40.0%
TTTCAGAAGAGAGAGAGGGA+GGG + chr5_3:31846791-31846810 None:intergenic 45.0%
ATTTCAGAAGAGAGAGAGGG+AGG + chr5_3:31846792-31846811 None:intergenic 45.0%
CGCGTACACAAGTTGTTCAT+TGG - chr5_3:31847083-31847102 Msa0808100:intron 45.0%
! TTTTCTAGATCTCTCGCGTG+TGG - chr5_3:31847457-31847476 Msa0808100:CDS 45.0%
TTTCTAGATCTCTCGCGTGT+GGG - chr5_3:31847458-31847477 Msa0808100:CDS 45.0%
ATATTCGCATCCCTGGAAGA+AGG + chr5_3:31847806-31847825 None:intergenic 45.0%
TTCTTCCAGGGATGCGAATA+TGG - chr5_3:31847805-31847824 Msa0808100:CDS 45.0%
TCTTCCGAAAAGCCTGATAG+TGG + chr5_3:31848070-31848089 None:intergenic 45.0%
CTCGTACATGTCTTCCAAGT+AGG + chr5_3:31848480-31848499 None:intergenic 45.0%
CTACTTGGAAGACATGTACG+AGG - chr5_3:31848478-31848497 Msa0808100:CDS 45.0%
ACAAGATGGTTGTAGTTCGC+TGG - chr5_3:31848513-31848532 Msa0808100:intron 45.0%
TTGCTGCACACAAATGGTTC+TGG + chr5_3:31848710-31848729 None:intergenic 45.0%
GTGCAGCAAGAAGTTTGGTA+AGG - chr5_3:31848721-31848740 Msa0808100:intron 45.0%
ACTAGAGTTTGACTCCACGT+GGG + chr5_3:31848819-31848838 None:intergenic 45.0%
!! ATCTGATGATGGACCAGAAC+TGG - chr5_3:31848853-31848872 Msa0808100:intron 45.0%
! TGGAGGTTTTCTTCCAGTTC+TGG + chr5_3:31848869-31848888 None:intergenic 45.0%
GTACACCGTTGCTTCTTCTT+TGG + chr5_3:31848911-31848930 None:intergenic 45.0%
GAAGAAGCAACGGTGTACAA+AGG - chr5_3:31848913-31848932 Msa0808100:intron 45.0%
CAACGGTGTACAAAGGTTGA+TGG - chr5_3:31848920-31848939 Msa0808100:intron 45.0%
TCGTTCTCCCGATCACAATT+CGG - chr5_3:31849536-31849555 Msa0808100:five_prime_UTR 45.0%
TGAACCGTCCGAATTGTGAT+CGG + chr5_3:31849547-31849566 None:intergenic 45.0%
GAGAGGGAGGGGTTTGAATT+GGG + chr5_3:31846779-31846798 None:intergenic 50.0%
AGAGAGGGAGGGGTTTGAAT+TGG + chr5_3:31846780-31846799 None:intergenic 50.0%
TTCAGAAGAGAGAGAGGGAG+GGG + chr5_3:31846790-31846809 None:intergenic 50.0%
TTCTAGATCTCTCGCGTGTG+GGG - chr5_3:31847459-31847478 Msa0808100:CDS 50.0%
TCACATGGTTAGGGTTACCC+TGG - chr5_3:31848024-31848043 Msa0808100:intron 50.0%
TAGGGTTACCCTGGACATGT+AGG - chr5_3:31848033-31848052 Msa0808100:intron 50.0%
AGCAGAGGAGAACAAACGTC+TGG - chr5_3:31848451-31848470 Msa0808100:intron 50.0%
CAAACGTCTGGTTGCCTACT+TGG - chr5_3:31848463-31848482 Msa0808100:CDS 50.0%
GACATGTACGAGGGTTCCAA+AGG - chr5_3:31848488-31848507 Msa0808100:CDS 50.0%
GGGTTCCAAAGGCAACAAGA+TGG - chr5_3:31848499-31848518 Msa0808100:CDS 50.0%
!! TCGAGCTTTGTTCCGGTACT+TGG + chr5_3:31848678-31848697 None:intergenic 50.0%
GAAGCAAATGTATCCCCACG+TGG - chr5_3:31848802-31848821 Msa0808100:intron 50.0%
CTAGAGTTTGACTCCACGTG+GGG + chr5_3:31848818-31848837 None:intergenic 50.0%
CACTAGAGTTTGACTCCACG+TGG + chr5_3:31848820-31848839 None:intergenic 50.0%
CACGTGGAGTCAAACTCTAG+TGG - chr5_3:31848818-31848837 Msa0808100:intron 50.0%
AATTTCAGCAAGGTCTGGGG+TGG - chr5_3:31849154-31849173 Msa0808100:intron 50.0%
TCTCCCGATCACAATTCGGA+CGG - chr5_3:31849540-31849559 Msa0808100:five_prime_UTR 50.0%
GAACCGTCCGAATTGTGATC+GGG + chr5_3:31849546-31849565 None:intergenic 50.0%
! TCTCTCGCGTGTGGGGATTT+TGG - chr5_3:31847466-31847485 Msa0808100:CDS 55.0%
CACAGCCATATTCGCATCCC+TGG + chr5_3:31847813-31847832 None:intergenic 55.0%
! GTAGTGCTGTGGACTGAGGA+CGG + chr5_3:31848654-31848673 None:intergenic 55.0%
CACAGCACTACGCCAAGTAC+CGG - chr5_3:31848663-31848682 Msa0808100:intron 55.0%
!! GAGCGTGTCGAGCTTTGTTC+CGG + chr5_3:31848685-31848704 None:intergenic 55.0%
! TGGCGTAGTGCTGTGGACTG+AGG + chr5_3:31848658-31848677 None:intergenic 60.0%
CGGTACTTGGCGTAGTGCTG+TGG + chr5_3:31848665-31848684 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31846732 31849596 31846732 ID=Msa0808100;Name=Msa0808100
chr5_3 mRNA 31846732 31849596 31846732 ID=Msa0808100-mRNA-1;Parent=Msa0808100;Name=Msa0808100-mRNA-1;_AED=0.31;_eAED=0.31;_QI=98|0.75|0.6|0.8|1|1|5|0|357
chr5_3 exon 31846732 31846809 31846732 ID=Msa0808100-mRNA-1:exon:10546;Parent=Msa0808100-mRNA-1
chr5_3 exon 31847394 31847900 31847394 ID=Msa0808100-mRNA-1:exon:10545;Parent=Msa0808100-mRNA-1
chr5_3 exon 31848222 31848344 31848222 ID=Msa0808100-mRNA-1:exon:10544;Parent=Msa0808100-mRNA-1
chr5_3 exon 31848457 31848527 31848457 ID=Msa0808100-mRNA-1:exon:10543;Parent=Msa0808100-mRNA-1
chr5_3 exon 31849204 31849596 31849204 ID=Msa0808100-mRNA-1:exon:10542;Parent=Msa0808100-mRNA-1
chr5_3 five_prime_UTR 31849499 31849596 31849499 ID=Msa0808100-mRNA-1:five_prime_utr;Parent=Msa0808100-mRNA-1
chr5_3 CDS 31849204 31849498 31849204 ID=Msa0808100-mRNA-1:cds;Parent=Msa0808100-mRNA-1
chr5_3 CDS 31848457 31848527 31848457 ID=Msa0808100-mRNA-1:cds;Parent=Msa0808100-mRNA-1
chr5_3 CDS 31848222 31848344 31848222 ID=Msa0808100-mRNA-1:cds;Parent=Msa0808100-mRNA-1
chr5_3 CDS 31847394 31847900 31847394 ID=Msa0808100-mRNA-1:cds;Parent=Msa0808100-mRNA-1
chr5_3 CDS 31846732 31846809 31846732 ID=Msa0808100-mRNA-1:cds;Parent=Msa0808100-mRNA-1
Gene Sequence

>Msa0808100

ATGGCTTTGAAAGAGAGATTGGCTTCATCTTCTGAAACGACGTCGTCACAAGATGAAAATGAAAAAAGATACGTTACGTGGGAAGAGAAATTCGTTTCGATGGATAAAGGTAGAAGAGAGGTTCGTTATTTTCTGAAGAAGAAAAGTGGTGAATTGGATCTTGCTCTTATTGGTAAAGAGAAAAGTTCTAGGCATATGAGTTATCATTATGCGATTAGAAATTCTTCGTTTGCTCCTTTTTTTAGACTTAAATCGCGTACACAAGTTGTTCATTGGTTAGATTCTATTGTTCAAGATCCTTCTTCCAGGGATGCGAATATGGCTGTGAGAGAACATGATTATGAACCTGATATTGGAACATTGAAGGATAATCAATTGCAGACGCTGCGCCCTTGTTCAAAAGAATTCACATGGTTAGGGTTACCCTGGACATGTAGGAAAAGAAGAAACCACTATCAGGCTTTTCGGAAGAACGGCTTTCAGATATCTGTGTATGATTTTGTGTTTGTTTTAGCAGAGGAGAACAAACGTCTGGTTGCCTACTTGGAAGACATGTACGAGGGTTCCAAAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTTTTGTTTTGCCCCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCCTTATCTTCAACGTCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCACAGCACTACGCCAAGTACCGGAACAAAGCTCGACACGCTCGTCCAGAACCATTTGTGTGCAGCAAGAAGTTTGGTAAGGATGATGTCAAGGATTTTGATATAACTCAAATGGAGGGTTATTGGAAACAGGAAATACTGAAGCAAATGTATCCCCACGTGGAGTCAAACTCTAGTGGTAGTTCAGGGAAATCTGATGATGGACCAGAACTGGAAGAAAACCTCCATTCTTCTTCTGCGATAAGACCAAAGAAGAAGCAACGGTGTACAAAGAAAAACAAGAAAACGGATCGTTCTCCCGATCACAATTCGGACGGTTCAGATTCAAGCTCCATAAGTTTGGGATTATAA

Protein sequence

>Msa0808100

MALKERLASSSETTSSQDENEKRYVTWEEKFVSMDKGRREVRYFLKKKSGELDLALIGKEKSSRHMSYHYAIRNSSFAPFFRLKSRTQVVHWLDSIVQDPSSRDANMAVREHDYEPDIGTLKDNQLQTLRPCSKEFTWLGLPWTCRKRRNHYQAFRKNGFQISVYDFVFVLAEENKRLVAYLEDMYEGSKGNKMVVVRWFHRIDEVGFVLPHSFSEREVYFSPYLQRLSIECIDGLTSVLSPQHYAKYRNKARHARPEPFVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGSSGKSDDGPELEENLHSSSAIRPKKKQRCTKKNKKTDRSPDHNSDGSDSSSISLGL*