Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611110 | XP_013456867.1 | 95.484 | 310 | 14 | 0 | 1 | 310 | 1 | 310 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611110 | sp|Q9FH92|IX15L_ARATH | 50.649 | 308 | 126 | 8 | 4 | 294 | 6 | 304 | 1.62e-101 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611110 | Msa0644410 | 0.817561 | 3.093178e-52 | -8.615850e-47 |
| Msa0611110 | Msa0675330 | 0.812105 | 5.012885e-51 | -8.615850e-47 |
| Msa0611110 | Msa0713700 | 0.817490 | 3.209520e-52 | -8.615850e-47 |
| Msa0611110 | Msa0835160 | 0.835242 | 1.880506e-56 | -8.615850e-47 |
| Msa0611110 | Msa0859290 | 0.800203 | 1.609397e-48 | -8.615850e-47 |
| Msa0611110 | Msa1123210 | 0.809117 | 2.216986e-50 | -8.615850e-47 |
| Msa0611110 | Msa1415540 | 0.815469 | 9.100415e-52 | -8.615850e-47 |
| Msa0611110 | Msa1440960 | 0.803910 | 2.781538e-49 | -8.615850e-47 |
| Msa0128310 | Msa0611110 | 0.812947 | 3.280131e-51 | -8.615850e-47 |
| Msa0174440 | Msa0611110 | 0.809252 | 2.074353e-50 | -8.615850e-47 |
| Msa0174450 | Msa0611110 | 0.808306 | 3.304464e-50 | -8.615850e-47 |
| Msa0298500 | Msa0611110 | 0.806779 | 6.968097e-50 | -8.615850e-47 |
| Msa0528570 | Msa0611110 | 0.817422 | 3.324846e-52 | -8.615850e-47 |
| Msa0548470 | Msa0611110 | 0.805106 | 1.566857e-49 | -8.615850e-47 |
| Msa0585020 | Msa0611110 | 0.810747 | 9.884370e-51 | -8.615850e-47 |
| Msa0597270 | Msa0611110 | 0.818695 | 1.713559e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611110 | MtrunA17_Chr4g0044461 | 95.484 | 310 | 14 | 0 | 1 | 310 | 1 | 310 | 0.0 | 547 |
| Msa0611110 | MtrunA17_Chr4g0044451 | 78.405 | 301 | 61 | 4 | 1 | 299 | 1 | 299 | 1.15e-160 | 449 |
| Msa0611110 | MtrunA17_Chr4g0053231 | 51.935 | 310 | 128 | 9 | 1 | 298 | 1 | 301 | 2.12e-103 | 304 |
| Msa0611110 | MtrunA17_Chr3g0077611 | 37.363 | 273 | 147 | 3 | 30 | 282 | 19 | 287 | 1.80e-60 | 194 |
| Msa0611110 | MtrunA17_Chr8g0377381 | 39.405 | 269 | 147 | 8 | 37 | 293 | 33 | 297 | 4.28e-59 | 191 |
| Msa0611110 | MtrunA17_Chr3g0122451 | 37.500 | 288 | 153 | 9 | 24 | 293 | 8 | 286 | 5.66e-58 | 188 |
| Msa0611110 | MtrunA17_Chr7g0225381 | 38.095 | 231 | 130 | 8 | 69 | 293 | 75 | 298 | 3.05e-49 | 166 |
| Msa0611110 | MtrunA17_Chr7g0225261 | 37.662 | 231 | 131 | 8 | 69 | 293 | 75 | 298 | 1.69e-48 | 164 |
| Msa0611110 | MtrunA17_Chr4g0057371 | 33.716 | 261 | 156 | 7 | 36 | 293 | 50 | 296 | 1.35e-38 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611110 | AT5G67210.1 | 50.649 | 308 | 126 | 8 | 4 | 294 | 6 | 304 | 1.65e-102 | 303 |
| Msa0611110 | AT3G50220.1 | 50.470 | 319 | 123 | 9 | 1 | 293 | 1 | 310 | 9.92e-99 | 293 |
| Msa0611110 | AT2G15440.1 | 57.576 | 231 | 89 | 5 | 71 | 295 | 78 | 305 | 5.02e-90 | 271 |
| Msa0611110 | AT1G71690.1 | 41.455 | 275 | 146 | 7 | 30 | 293 | 24 | 294 | 3.75e-62 | 199 |
| Msa0611110 | AT1G09610.1 | 38.868 | 265 | 150 | 5 | 36 | 293 | 22 | 281 | 8.86e-60 | 192 |
| Msa0611110 | AT1G67330.1 | 39.216 | 255 | 142 | 7 | 45 | 293 | 44 | 291 | 8.24e-56 | 183 |
| Msa0611110 | AT1G33800.1 | 39.189 | 222 | 130 | 2 | 61 | 282 | 63 | 279 | 5.35e-54 | 178 |
| Msa0611110 | AT4G09990.1 | 41.364 | 220 | 123 | 3 | 64 | 282 | 58 | 272 | 6.31e-53 | 175 |
| Msa0611110 | AT1G27930.1 | 39.056 | 233 | 129 | 6 | 69 | 293 | 62 | 289 | 6.28e-52 | 172 |
| Msa0611110 | AT4G24910.1 | 35.160 | 219 | 130 | 6 | 82 | 293 | 94 | 307 | 5.68e-34 | 126 |
Find 87 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATATTTGTTCATGATTT+TGG | 0.086760 | 4_2:-59174315 | Msa0611110:CDS |
| TGAAAACAGTGCGGCCATTT+TGG | 0.201219 | 4_2:+59174670 | None:intergenic |
| GTTTCTTTGTGAAGATAATT+TGG | 0.250701 | 4_2:-59174262 | Msa0611110:CDS |
| TGGGATGTGATTCTTGTTGA+TGG | 0.262211 | 4_2:-59174429 | Msa0611110:CDS |
| CACCCCAACTTCCTCATCTT+TGG | 0.291696 | 4_2:-59174729 | Msa0611110:CDS |
| GTTAACAATGTAGATCAGTT+AGG | 0.340564 | 4_2:-59174240 | Msa0611110:CDS |
| CCTTTCACTCTCACCGTCTC+TGG | 0.346192 | 4_2:-59174974 | Msa0611110:CDS |
| GACATTCTCCCCGGAGCTGC+TGG | 0.352668 | 4_2:+59174390 | None:intergenic |
| ACATCGTAAGCTTCTATTCC+TGG | 0.353153 | 4_2:+59174603 | None:intergenic |
| ACACCGACACAGACAGCAAC+GGG | 0.369803 | 4_2:+59174151 | None:intergenic |
| TGGTCTGCACTAAACCAAAA+TGG | 0.379219 | 4_2:-59174684 | Msa0611110:CDS |
| TTCTGCAAAGGACATGGATT+TGG | 0.381583 | 4_2:+59174788 | None:intergenic |
| GGATGATGCGGCGGAGGAGG+TGG | 0.400343 | 4_2:+59174881 | None:intergenic |
| GGGTGGAGAAGGATAAGCTT+AGG | 0.411176 | 4_2:+59175026 | None:intergenic |
| GGTGGATGATGCGGCGGAGG+AGG | 0.415037 | 4_2:+59174878 | None:intergenic |
| AGACCAAAGATGAGGAAGTT+GGG | 0.418333 | 4_2:+59174726 | None:intergenic |
| CTTAGGATACTCACTAACTT+TGG | 0.420087 | 4_2:+59174569 | None:intergenic |
| AGGGTACTTTCCAGCAGCTC+CGG | 0.423696 | 4_2:-59174400 | Msa0611110:CDS |
| GGGTGGAAGAGGAGAGGCGG+TGG | 0.433122 | 4_2:+59174860 | None:intergenic |
| ATCACATTTACCAACTCTCT+TGG | 0.441799 | 4_2:-59174449 | Msa0611110:CDS |
| CTACAGTGAAGAATGTTAGA+AGG | 0.444522 | 4_2:+59174940 | None:intergenic |
| TCACATTTACCAACTCTCTT+GGG | 0.449338 | 4_2:-59174448 | Msa0611110:CDS |
| AGCGTAGTGGAGGAGAGCTT+TGG | 0.451427 | 4_2:+59174830 | None:intergenic |
| TTTGCATGAGAAAGAAGCTT+AGG | 0.452449 | 4_2:+59174552 | None:intergenic |
| CATCGTAAGCTTCTATTCCT+GGG | 0.452753 | 4_2:+59174604 | None:intergenic |
| GGAAGTTGGGGTGTGGTGTA+AGG | 0.455838 | 4_2:+59174739 | None:intergenic |
| GGCGGTGGATGATGCGGCGG+AGG | 0.464726 | 4_2:+59174875 | None:intergenic |
| CCAGAGACGGTGAGAGTGAA+AGG | 0.468536 | 4_2:+59174974 | None:intergenic |
| TGTGAAGAGAAGGGTGGAGA+AGG | 0.469776 | 4_2:+59175015 | None:intergenic |
| TGAGAGTGAAAGGGTGTTGT+TGG | 0.472612 | 4_2:+59174984 | None:intergenic |
| GAGAATAACAAATTCTGCAC+AGG | 0.481549 | 4_2:+59174504 | None:intergenic |
| TTAACAATGTAGATCAGTTA+GGG | 0.485880 | 4_2:-59174239 | Msa0611110:CDS |
| TGCGGCGGAGGAGGTGGAAG+AGG | 0.489582 | 4_2:+59174887 | None:intergenic |
| GAGACCAAAGATGAGGAAGT+TGG | 0.489813 | 4_2:+59174725 | None:intergenic |
| GGGATGTGATTCTTGTTGAT+GGG | 0.499135 | 4_2:-59174428 | Msa0611110:CDS |
| GCTGCTGGAAAGTACCCTCT+TGG | 0.504513 | 4_2:+59174405 | None:intergenic |
| GAGAGTTGGTAAATGTGATT+CGG | 0.504967 | 4_2:+59174453 | None:intergenic |
| CTCAGAACTTTCACCACTGT+CGG | 0.508966 | 4_2:+59174194 | None:intergenic |
| TGCAAAGGACATGGATTTGG+TGG | 0.509643 | 4_2:+59174791 | None:intergenic |
| TTACAGCAGCAGTGTTGGCT+AGG | 0.509760 | 4_2:-59174359 | Msa0611110:CDS |
| GGAGGAGGTGGAAGAGGTGA+TGG | 0.516630 | 4_2:+59174893 | None:intergenic |
| GCTGTCTGTGTCGGTGTCAA+AGG | 0.523067 | 4_2:-59174145 | Msa0611110:CDS |
| TTGGTAACGGAGGGTGGAAG+AGG | 0.525274 | 4_2:+59174849 | None:intergenic |
| GGGTACTTTCCAGCAGCTCC+GGG | 0.525528 | 4_2:-59174399 | Msa0611110:CDS |
| GTTGATTTCTGCAAAGGACA+TGG | 0.530504 | 4_2:+59174782 | None:intergenic |
| TTGAAGAGGAAGCGTAGTGG+AGG | 0.536802 | 4_2:+59174820 | None:intergenic |
| GTGTGGTGTAAGGTGAAGAG+TGG | 0.537699 | 4_2:+59174749 | None:intergenic |
| GATCTTTACAGCAGCAGTGT+TGG | 0.541117 | 4_2:-59174364 | Msa0611110:CDS |
| CAGACCAGAGTAGTGACTCA+TGG | 0.544736 | 4_2:+59174700 | None:intergenic |
| TTATTCTCAGAGTGCAAACT+CGG | 0.549829 | 4_2:-59174489 | Msa0611110:CDS |
| TATGACGTTGATTTCTGCAA+AGG | 0.551620 | 4_2:+59174776 | None:intergenic |
| GGAGGTGGAAGAGGTGATGG+TGG | 0.559875 | 4_2:+59174896 | None:intergenic |
| GGAGCTTGTTTGTGAAGAGA+AGG | 0.561069 | 4_2:+59175005 | None:intergenic |
| GTTGGCTAGGAGCAAGAAAG+TGG | 0.565369 | 4_2:-59174346 | Msa0611110:CDS |
| AGGAGAGGCGGTGGATGATG+CGG | 0.565850 | 4_2:+59174869 | None:intergenic |
| GAGCTTGTTTGTGAAGAGAA+GGG | 0.566931 | 4_2:+59175006 | None:intergenic |
| CTTGTTTGTGAAGAGAAGGG+TGG | 0.573595 | 4_2:+59175009 | None:intergenic |
| GAATCACATCCCAAGAGAGT+TGG | 0.574578 | 4_2:+59174439 | None:intergenic |
| GTGTCAAAGGATGTTGATTG+AGG | 0.579266 | 4_2:-59174132 | None:intergenic |
| AAGATCGCCGACATTCTCCC+CGG | 0.585175 | 4_2:+59174381 | None:intergenic |
| AGAGCTTTGGTAACGGAGGG+TGG | 0.585261 | 4_2:+59174843 | None:intergenic |
| TTCCCCGTTGCTGTCTGTGT+CGG | 0.586303 | 4_2:-59174154 | Msa0611110:CDS |
| AGCAGCTCCGGGGAGAATGT+CGG | 0.587643 | 4_2:-59174388 | Msa0611110:CDS |
| AGACCAGAGTAGTGACTCAT+GGG | 0.591823 | 4_2:+59174701 | None:intergenic |
| AACGGAGGGTGGAAGAGGAG+AGG | 0.598706 | 4_2:+59174854 | None:intergenic |
| CAGAGACGGTGAGAGTGAAA+GGG | 0.600070 | 4_2:+59174975 | None:intergenic |
| GACACCGACACAGACAGCAA+CGG | 0.600944 | 4_2:+59174150 | None:intergenic |
| TTTGGTGGTGGTGTTTGAAG+AGG | 0.601857 | 4_2:+59174806 | None:intergenic |
| GACCAAAGATGAGGAAGTTG+GGG | 0.603361 | 4_2:+59174727 | None:intergenic |
| GTGGAGGAGAGCTTTGGTAA+CGG | 0.611545 | 4_2:+59174836 | None:intergenic |
| GGAGGGTGGAAGAGGAGAGG+CGG | 0.612135 | 4_2:+59174857 | None:intergenic |
| TTCTTGTTGATGGGCCAAGA+GGG | 0.619497 | 4_2:-59174419 | Msa0611110:CDS |
| TCACCCATGAGTCACTACTC+TGG | 0.620593 | 4_2:-59174704 | Msa0611110:CDS |
| AAAGGACATGGATTTGGTGG+TGG | 0.622061 | 4_2:+59174794 | None:intergenic |
| TGTTTGAAGAGGAAGCGTAG+TGG | 0.631833 | 4_2:+59174817 | None:intergenic |
| AGAGGCGGTGGATGATGCGG+CGG | 0.647328 | 4_2:+59174872 | None:intergenic |
| AGGAGAGCTTTGGTAACGGA+GGG | 0.658909 | 4_2:+59174840 | None:intergenic |
| CATGGGTGAGACCAAAGATG+AGG | 0.664296 | 4_2:+59174718 | None:intergenic |
| GAGGAGAGCTTTGGTAACGG+AGG | 0.669266 | 4_2:+59174839 | None:intergenic |
| AAGATGAGGAAGTTGGGGTG+TGG | 0.672911 | 4_2:+59174732 | None:intergenic |
| AAATTTGAACAGTCAAACCC+AGG | 0.678940 | 4_2:-59174621 | Msa0611110:CDS |
| TTGGCTAGGAGCAAGAAAGT+GGG | 0.680921 | 4_2:-59174345 | Msa0611110:CDS |
| GGTACTTTCCAGCAGCTCCG+GGG | 0.706466 | 4_2:-59174398 | Msa0611110:CDS |
| GTGAAGAGTGGAACCGACAG+TGG | 0.708738 | 4_2:-59174207 | Msa0611110:CDS |
| ATTCTTGTTGATGGGCCAAG+AGG | 0.712899 | 4_2:-59174420 | Msa0611110:CDS |
| CACCGACACAGACAGCAACG+GGG | 0.766711 | 4_2:+59174152 | None:intergenic |
| TTTCATCTATGAAAACAGTG+CGG | 0.775770 | 4_2:+59174661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACATATTTGTTCATGATTT+TGG | - | chr4_2:59174863-59174882 | Msa0611110:CDS | 25.0% |
| ! | GTTTCTTTGTGAAGATAATT+TGG | - | chr4_2:59174916-59174935 | Msa0611110:CDS | 25.0% |
| ! | TTAACAATGTAGATCAGTTA+GGG | - | chr4_2:59174939-59174958 | Msa0611110:CDS | 25.0% |
| !! | CACATATTTGTTCATGATTT+TGG | - | chr4_2:59174863-59174882 | Msa0611110:CDS | 25.0% |
| ! | GTTTCTTTGTGAAGATAATT+TGG | - | chr4_2:59174916-59174935 | Msa0611110:CDS | 25.0% |
| ! | TTAACAATGTAGATCAGTTA+GGG | - | chr4_2:59174939-59174958 | Msa0611110:CDS | 25.0% |
| TTTCATCTATGAAAACAGTG+CGG | + | chr4_2:59174520-59174539 | None:intergenic | 30.0% | |
| GTTAACAATGTAGATCAGTT+AGG | - | chr4_2:59174938-59174957 | Msa0611110:CDS | 30.0% | |
| TTTCATCTATGAAAACAGTG+CGG | + | chr4_2:59174520-59174539 | None:intergenic | 30.0% | |
| GTTAACAATGTAGATCAGTT+AGG | - | chr4_2:59174938-59174957 | Msa0611110:CDS | 30.0% | |
| CTACAGTGAAGAATGTTAGA+AGG | + | chr4_2:59174241-59174260 | None:intergenic | 35.0% | |
| !! | TATGACGTTGATTTCTGCAA+AGG | + | chr4_2:59174405-59174424 | None:intergenic | 35.0% |
| AAATTTGAACAGTCAAACCC+AGG | - | chr4_2:59174557-59174576 | Msa0611110:CDS | 35.0% | |
| CTTAGGATACTCACTAACTT+TGG | + | chr4_2:59174612-59174631 | None:intergenic | 35.0% | |
| TTTGCATGAGAAAGAAGCTT+AGG | + | chr4_2:59174629-59174648 | None:intergenic | 35.0% | |
| GAGAATAACAAATTCTGCAC+AGG | + | chr4_2:59174677-59174696 | None:intergenic | 35.0% | |
| TTATTCTCAGAGTGCAAACT+CGG | - | chr4_2:59174689-59174708 | Msa0611110:CDS | 35.0% | |
| !! | GAGAGTTGGTAAATGTGATT+CGG | + | chr4_2:59174728-59174747 | None:intergenic | 35.0% |
| ATCACATTTACCAACTCTCT+TGG | - | chr4_2:59174729-59174748 | Msa0611110:CDS | 35.0% | |
| TCACATTTACCAACTCTCTT+GGG | - | chr4_2:59174730-59174749 | Msa0611110:CDS | 35.0% | |
| !! | TCATGATTTTGGAAGAGAAG+TGG | - | chr4_2:59174874-59174893 | Msa0611110:CDS | 35.0% |
| CTACAGTGAAGAATGTTAGA+AGG | + | chr4_2:59174241-59174260 | None:intergenic | 35.0% | |
| !! | TATGACGTTGATTTCTGCAA+AGG | + | chr4_2:59174405-59174424 | None:intergenic | 35.0% |
| AAATTTGAACAGTCAAACCC+AGG | - | chr4_2:59174557-59174576 | Msa0611110:CDS | 35.0% | |
| CTTAGGATACTCACTAACTT+TGG | + | chr4_2:59174612-59174631 | None:intergenic | 35.0% | |
| TTTGCATGAGAAAGAAGCTT+AGG | + | chr4_2:59174629-59174648 | None:intergenic | 35.0% | |
| GAGAATAACAAATTCTGCAC+AGG | + | chr4_2:59174677-59174696 | None:intergenic | 35.0% | |
| TTATTCTCAGAGTGCAAACT+CGG | - | chr4_2:59174689-59174708 | Msa0611110:CDS | 35.0% | |
| !! | GAGAGTTGGTAAATGTGATT+CGG | + | chr4_2:59174728-59174747 | None:intergenic | 35.0% |
| ATCACATTTACCAACTCTCT+TGG | - | chr4_2:59174729-59174748 | Msa0611110:CDS | 35.0% | |
| TCACATTTACCAACTCTCTT+GGG | - | chr4_2:59174730-59174749 | Msa0611110:CDS | 35.0% | |
| !! | TCATGATTTTGGAAGAGAAG+TGG | - | chr4_2:59174874-59174893 | Msa0611110:CDS | 35.0% |
| ! | GAGCTTGTTTGTGAAGAGAA+GGG | + | chr4_2:59174175-59174194 | None:intergenic | 40.0% |
| GGAAGAAGAAAAACCAGAGA+CGG | + | chr4_2:59174220-59174239 | None:intergenic | 40.0% | |
| TTCTGCAAAGGACATGGATT+TGG | + | chr4_2:59174393-59174412 | None:intergenic | 40.0% | |
| ! | GTTGATTTCTGCAAAGGACA+TGG | + | chr4_2:59174399-59174418 | None:intergenic | 40.0% |
| AGACCAAAGATGAGGAAGTT+GGG | + | chr4_2:59174455-59174474 | None:intergenic | 40.0% | |
| TGGTCTGCACTAAACCAAAA+TGG | - | chr4_2:59174494-59174513 | Msa0611110:CDS | 40.0% | |
| CATCGTAAGCTTCTATTCCT+GGG | + | chr4_2:59174577-59174596 | None:intergenic | 40.0% | |
| ACATCGTAAGCTTCTATTCC+TGG | + | chr4_2:59174578-59174597 | None:intergenic | 40.0% | |
| TGGGATGTGATTCTTGTTGA+TGG | - | chr4_2:59174749-59174768 | Msa0611110:CDS | 40.0% | |
| GGGATGTGATTCTTGTTGAT+GGG | - | chr4_2:59174750-59174769 | Msa0611110:CDS | 40.0% | |
| !! | AGATCAGTTAGGGCATTTTG+TGG | - | chr4_2:59174949-59174968 | Msa0611110:CDS | 40.0% |
| ! | GAGCTTGTTTGTGAAGAGAA+GGG | + | chr4_2:59174175-59174194 | None:intergenic | 40.0% |
| GGAAGAAGAAAAACCAGAGA+CGG | + | chr4_2:59174220-59174239 | None:intergenic | 40.0% | |
| TTCTGCAAAGGACATGGATT+TGG | + | chr4_2:59174393-59174412 | None:intergenic | 40.0% | |
| ! | GTTGATTTCTGCAAAGGACA+TGG | + | chr4_2:59174399-59174418 | None:intergenic | 40.0% |
| AGACCAAAGATGAGGAAGTT+GGG | + | chr4_2:59174455-59174474 | None:intergenic | 40.0% | |
| TGGTCTGCACTAAACCAAAA+TGG | - | chr4_2:59174494-59174513 | Msa0611110:CDS | 40.0% | |
| CATCGTAAGCTTCTATTCCT+GGG | + | chr4_2:59174577-59174596 | None:intergenic | 40.0% | |
| ACATCGTAAGCTTCTATTCC+TGG | + | chr4_2:59174578-59174597 | None:intergenic | 40.0% | |
| TGGGATGTGATTCTTGTTGA+TGG | - | chr4_2:59174749-59174768 | Msa0611110:CDS | 40.0% | |
| GGGATGTGATTCTTGTTGAT+GGG | - | chr4_2:59174750-59174769 | Msa0611110:CDS | 40.0% | |
| !! | AGATCAGTTAGGGCATTTTG+TGG | - | chr4_2:59174949-59174968 | Msa0611110:CDS | 40.0% |
| CTTGTTTGTGAAGAGAAGGG+TGG | + | chr4_2:59174172-59174191 | None:intergenic | 45.0% | |
| ! | GGAGCTTGTTTGTGAAGAGA+AGG | + | chr4_2:59174176-59174195 | None:intergenic | 45.0% |
| !! | TGAGAGTGAAAGGGTGTTGT+TGG | + | chr4_2:59174197-59174216 | None:intergenic | 45.0% |
| ! | TGTTTGAAGAGGAAGCGTAG+TGG | + | chr4_2:59174364-59174383 | None:intergenic | 45.0% |
| !! | TTTGGTGGTGGTGTTTGAAG+AGG | + | chr4_2:59174375-59174394 | None:intergenic | 45.0% |
| !! | AAAGGACATGGATTTGGTGG+TGG | + | chr4_2:59174387-59174406 | None:intergenic | 45.0% |
| TGCAAAGGACATGGATTTGG+TGG | + | chr4_2:59174390-59174409 | None:intergenic | 45.0% | |
| GACCAAAGATGAGGAAGTTG+GGG | + | chr4_2:59174454-59174473 | None:intergenic | 45.0% | |
| GAGACCAAAGATGAGGAAGT+TGG | + | chr4_2:59174456-59174475 | None:intergenic | 45.0% | |
| AGACCAGAGTAGTGACTCAT+GGG | + | chr4_2:59174480-59174499 | None:intergenic | 45.0% | |
| ! | TGAAAACAGTGCGGCCATTT+TGG | + | chr4_2:59174511-59174530 | None:intergenic | 45.0% |
| GAATCACATCCCAAGAGAGT+TGG | + | chr4_2:59174742-59174761 | None:intergenic | 45.0% | |
| ! | ATTCTTGTTGATGGGCCAAG+AGG | - | chr4_2:59174758-59174777 | Msa0611110:CDS | 45.0% |
| ! | TTCTTGTTGATGGGCCAAGA+GGG | - | chr4_2:59174759-59174778 | Msa0611110:CDS | 45.0% |
| GATCTTTACAGCAGCAGTGT+TGG | - | chr4_2:59174814-59174833 | Msa0611110:CDS | 45.0% | |
| TTGGCTAGGAGCAAGAAAGT+GGG | - | chr4_2:59174833-59174852 | Msa0611110:CDS | 45.0% | |
| CTCAGAACTTTCACCACTGT+CGG | + | chr4_2:59174987-59175006 | None:intergenic | 45.0% | |
| CTTGTTTGTGAAGAGAAGGG+TGG | + | chr4_2:59174172-59174191 | None:intergenic | 45.0% | |
| ! | GGAGCTTGTTTGTGAAGAGA+AGG | + | chr4_2:59174176-59174195 | None:intergenic | 45.0% |
| !! | TGAGAGTGAAAGGGTGTTGT+TGG | + | chr4_2:59174197-59174216 | None:intergenic | 45.0% |
| ! | TGTTTGAAGAGGAAGCGTAG+TGG | + | chr4_2:59174364-59174383 | None:intergenic | 45.0% |
| !! | TTTGGTGGTGGTGTTTGAAG+AGG | + | chr4_2:59174375-59174394 | None:intergenic | 45.0% |
| !! | AAAGGACATGGATTTGGTGG+TGG | + | chr4_2:59174387-59174406 | None:intergenic | 45.0% |
| TGCAAAGGACATGGATTTGG+TGG | + | chr4_2:59174390-59174409 | None:intergenic | 45.0% | |
| GACCAAAGATGAGGAAGTTG+GGG | + | chr4_2:59174454-59174473 | None:intergenic | 45.0% | |
| GAGACCAAAGATGAGGAAGT+TGG | + | chr4_2:59174456-59174475 | None:intergenic | 45.0% | |
| AGACCAGAGTAGTGACTCAT+GGG | + | chr4_2:59174480-59174499 | None:intergenic | 45.0% | |
| ! | TGAAAACAGTGCGGCCATTT+TGG | + | chr4_2:59174511-59174530 | None:intergenic | 45.0% |
| GAATCACATCCCAAGAGAGT+TGG | + | chr4_2:59174742-59174761 | None:intergenic | 45.0% | |
| ! | ATTCTTGTTGATGGGCCAAG+AGG | - | chr4_2:59174758-59174777 | Msa0611110:CDS | 45.0% |
| ! | TTCTTGTTGATGGGCCAAGA+GGG | - | chr4_2:59174759-59174778 | Msa0611110:CDS | 45.0% |
| GATCTTTACAGCAGCAGTGT+TGG | - | chr4_2:59174814-59174833 | Msa0611110:CDS | 45.0% | |
| TTGGCTAGGAGCAAGAAAGT+GGG | - | chr4_2:59174833-59174852 | Msa0611110:CDS | 45.0% | |
| CTCAGAACTTTCACCACTGT+CGG | + | chr4_2:59174987-59175006 | None:intergenic | 45.0% | |
| GGGTGGAGAAGGATAAGCTT+AGG | + | chr4_2:59174155-59174174 | None:intergenic | 50.0% | |
| TGTGAAGAGAAGGGTGGAGA+AGG | + | chr4_2:59174166-59174185 | None:intergenic | 50.0% | |
| CAGAGACGGTGAGAGTGAAA+GGG | + | chr4_2:59174206-59174225 | None:intergenic | 50.0% | |
| !! | AGGAGAGCTTTGGTAACGGA+GGG | + | chr4_2:59174341-59174360 | None:intergenic | 50.0% |
| ! | GTGGAGGAGAGCTTTGGTAA+CGG | + | chr4_2:59174345-59174364 | None:intergenic | 50.0% |
| ! | TTGAAGAGGAAGCGTAGTGG+AGG | + | chr4_2:59174361-59174380 | None:intergenic | 50.0% |
| GTGTGGTGTAAGGTGAAGAG+TGG | + | chr4_2:59174432-59174451 | None:intergenic | 50.0% | |
| AAGATGAGGAAGTTGGGGTG+TGG | + | chr4_2:59174449-59174468 | None:intergenic | 50.0% | |
| CACCCCAACTTCCTCATCTT+TGG | - | chr4_2:59174449-59174468 | Msa0611110:CDS | 50.0% | |
| CATGGGTGAGACCAAAGATG+AGG | + | chr4_2:59174463-59174482 | None:intergenic | 50.0% | |
| TCACCCATGAGTCACTACTC+TGG | - | chr4_2:59174474-59174493 | Msa0611110:CDS | 50.0% | |
| CAGACCAGAGTAGTGACTCA+TGG | + | chr4_2:59174481-59174500 | None:intergenic | 50.0% | |
| !! | TTACAGCAGCAGTGTTGGCT+AGG | - | chr4_2:59174819-59174838 | Msa0611110:CDS | 50.0% |
| GTTGGCTAGGAGCAAGAAAG+TGG | - | chr4_2:59174832-59174851 | Msa0611110:CDS | 50.0% | |
| ! | GGGCATTTTGTGGTGAAGAG+TGG | - | chr4_2:59174959-59174978 | Msa0611110:CDS | 50.0% |
| GGGTGGAGAAGGATAAGCTT+AGG | + | chr4_2:59174155-59174174 | None:intergenic | 50.0% | |
| TGTGAAGAGAAGGGTGGAGA+AGG | + | chr4_2:59174166-59174185 | None:intergenic | 50.0% | |
| CAGAGACGGTGAGAGTGAAA+GGG | + | chr4_2:59174206-59174225 | None:intergenic | 50.0% | |
| !! | AGGAGAGCTTTGGTAACGGA+GGG | + | chr4_2:59174341-59174360 | None:intergenic | 50.0% |
| ! | GTGGAGGAGAGCTTTGGTAA+CGG | + | chr4_2:59174345-59174364 | None:intergenic | 50.0% |
| ! | TTGAAGAGGAAGCGTAGTGG+AGG | + | chr4_2:59174361-59174380 | None:intergenic | 50.0% |
| GTGTGGTGTAAGGTGAAGAG+TGG | + | chr4_2:59174432-59174451 | None:intergenic | 50.0% | |
| AAGATGAGGAAGTTGGGGTG+TGG | + | chr4_2:59174449-59174468 | None:intergenic | 50.0% | |
| CACCCCAACTTCCTCATCTT+TGG | - | chr4_2:59174449-59174468 | Msa0611110:CDS | 50.0% | |
| CATGGGTGAGACCAAAGATG+AGG | + | chr4_2:59174463-59174482 | None:intergenic | 50.0% | |
| TCACCCATGAGTCACTACTC+TGG | - | chr4_2:59174474-59174493 | Msa0611110:CDS | 50.0% | |
| CAGACCAGAGTAGTGACTCA+TGG | + | chr4_2:59174481-59174500 | None:intergenic | 50.0% | |
| !! | TTACAGCAGCAGTGTTGGCT+AGG | - | chr4_2:59174819-59174838 | Msa0611110:CDS | 50.0% |
| GTTGGCTAGGAGCAAGAAAG+TGG | - | chr4_2:59174832-59174851 | Msa0611110:CDS | 50.0% | |
| ! | GGGCATTTTGTGGTGAAGAG+TGG | - | chr4_2:59174959-59174978 | Msa0611110:CDS | 50.0% |
| CCAGAGACGGTGAGAGTGAA+AGG | + | chr4_2:59174207-59174226 | None:intergenic | 55.0% | |
| CCTTTCACTCTCACCGTCTC+TGG | - | chr4_2:59174204-59174223 | Msa0611110:CDS | 55.0% | |
| !! | TTGGTAACGGAGGGTGGAAG+AGG | + | chr4_2:59174332-59174351 | None:intergenic | 55.0% |
| !! | AGAGCTTTGGTAACGGAGGG+TGG | + | chr4_2:59174338-59174357 | None:intergenic | 55.0% |
| !! | GAGGAGAGCTTTGGTAACGG+AGG | + | chr4_2:59174342-59174361 | None:intergenic | 55.0% |
| ! | AGCGTAGTGGAGGAGAGCTT+TGG | + | chr4_2:59174351-59174370 | None:intergenic | 55.0% |
| GGAAGTTGGGGTGTGGTGTA+AGG | + | chr4_2:59174442-59174461 | None:intergenic | 55.0% | |
| !! | GCTGCTGGAAAGTACCCTCT+TGG | + | chr4_2:59174776-59174795 | None:intergenic | 55.0% |
| ! | AGGGTACTTTCCAGCAGCTC+CGG | - | chr4_2:59174778-59174797 | Msa0611110:CDS | 55.0% |
| AAGATCGCCGACATTCTCCC+CGG | + | chr4_2:59174800-59174819 | None:intergenic | 55.0% | |
| GTGAAGAGTGGAACCGACAG+TGG | - | chr4_2:59174971-59174990 | Msa0611110:CDS | 55.0% | |
| TTCCCCGTTGCTGTCTGTGT+CGG | - | chr4_2:59175024-59175043 | Msa0611110:CDS | 55.0% | |
| ACACCGACACAGACAGCAAC+GGG | + | chr4_2:59175030-59175049 | None:intergenic | 55.0% | |
| GACACCGACACAGACAGCAA+CGG | + | chr4_2:59175031-59175050 | None:intergenic | 55.0% | |
| !! | GCTGTCTGTGTCGGTGTCAA+AGG | - | chr4_2:59175033-59175052 | Msa0611110:CDS | 55.0% |
| CCAGAGACGGTGAGAGTGAA+AGG | + | chr4_2:59174207-59174226 | None:intergenic | 55.0% | |
| CCTTTCACTCTCACCGTCTC+TGG | - | chr4_2:59174204-59174223 | Msa0611110:CDS | 55.0% | |
| !! | TTGGTAACGGAGGGTGGAAG+AGG | + | chr4_2:59174332-59174351 | None:intergenic | 55.0% |
| !! | AGAGCTTTGGTAACGGAGGG+TGG | + | chr4_2:59174338-59174357 | None:intergenic | 55.0% |
| !! | GAGGAGAGCTTTGGTAACGG+AGG | + | chr4_2:59174342-59174361 | None:intergenic | 55.0% |
| ! | AGCGTAGTGGAGGAGAGCTT+TGG | + | chr4_2:59174351-59174370 | None:intergenic | 55.0% |
| GGAAGTTGGGGTGTGGTGTA+AGG | + | chr4_2:59174442-59174461 | None:intergenic | 55.0% | |
| !! | GCTGCTGGAAAGTACCCTCT+TGG | + | chr4_2:59174776-59174795 | None:intergenic | 55.0% |
| ! | AGGGTACTTTCCAGCAGCTC+CGG | - | chr4_2:59174778-59174797 | Msa0611110:CDS | 55.0% |
| AAGATCGCCGACATTCTCCC+CGG | + | chr4_2:59174800-59174819 | None:intergenic | 55.0% | |
| GTGAAGAGTGGAACCGACAG+TGG | - | chr4_2:59174971-59174990 | Msa0611110:CDS | 55.0% | |
| TTCCCCGTTGCTGTCTGTGT+CGG | - | chr4_2:59175024-59175043 | Msa0611110:CDS | 55.0% | |
| ACACCGACACAGACAGCAAC+GGG | + | chr4_2:59175030-59175049 | None:intergenic | 55.0% | |
| GACACCGACACAGACAGCAA+CGG | + | chr4_2:59175031-59175050 | None:intergenic | 55.0% | |
| !! | GCTGTCTGTGTCGGTGTCAA+AGG | - | chr4_2:59175033-59175052 | Msa0611110:CDS | 55.0% |
| ! | GGAGGTGGAAGAGGTGATGG+TGG | + | chr4_2:59174285-59174304 | None:intergenic | 60.0% |
| GGAGGAGGTGGAAGAGGTGA+TGG | + | chr4_2:59174288-59174307 | None:intergenic | 60.0% | |
| AGGAGAGGCGGTGGATGATG+CGG | + | chr4_2:59174312-59174331 | None:intergenic | 60.0% | |
| AACGGAGGGTGGAAGAGGAG+AGG | + | chr4_2:59174327-59174346 | None:intergenic | 60.0% | |
| GGGTACTTTCCAGCAGCTCC+GGG | - | chr4_2:59174779-59174798 | Msa0611110:CDS | 60.0% | |
| GGTACTTTCCAGCAGCTCCG+GGG | - | chr4_2:59174780-59174799 | Msa0611110:CDS | 60.0% | |
| AGCAGCTCCGGGGAGAATGT+CGG | - | chr4_2:59174790-59174809 | Msa0611110:CDS | 60.0% | |
| CACCGACACAGACAGCAACG+GGG | + | chr4_2:59175029-59175048 | None:intergenic | 60.0% | |
| ! | GGAGGTGGAAGAGGTGATGG+TGG | + | chr4_2:59174285-59174304 | None:intergenic | 60.0% |
| GGAGGAGGTGGAAGAGGTGA+TGG | + | chr4_2:59174288-59174307 | None:intergenic | 60.0% | |
| AGGAGAGGCGGTGGATGATG+CGG | + | chr4_2:59174312-59174331 | None:intergenic | 60.0% | |
| AACGGAGGGTGGAAGAGGAG+AGG | + | chr4_2:59174327-59174346 | None:intergenic | 60.0% | |
| GGGTACTTTCCAGCAGCTCC+GGG | - | chr4_2:59174779-59174798 | Msa0611110:CDS | 60.0% | |
| GGTACTTTCCAGCAGCTCCG+GGG | - | chr4_2:59174780-59174799 | Msa0611110:CDS | 60.0% | |
| AGCAGCTCCGGGGAGAATGT+CGG | - | chr4_2:59174790-59174809 | Msa0611110:CDS | 60.0% | |
| CACCGACACAGACAGCAACG+GGG | + | chr4_2:59175029-59175048 | None:intergenic | 60.0% | |
| AGAGGCGGTGGATGATGCGG+CGG | + | chr4_2:59174309-59174328 | None:intergenic | 65.0% | |
| GGAGGGTGGAAGAGGAGAGG+CGG | + | chr4_2:59174324-59174343 | None:intergenic | 65.0% | |
| GACATTCTCCCCGGAGCTGC+TGG | + | chr4_2:59174791-59174810 | None:intergenic | 65.0% | |
| AGAGGCGGTGGATGATGCGG+CGG | + | chr4_2:59174309-59174328 | None:intergenic | 65.0% | |
| GGAGGGTGGAAGAGGAGAGG+CGG | + | chr4_2:59174324-59174343 | None:intergenic | 65.0% | |
| GACATTCTCCCCGGAGCTGC+TGG | + | chr4_2:59174791-59174810 | None:intergenic | 65.0% | |
| TGCGGCGGAGGAGGTGGAAG+AGG | + | chr4_2:59174294-59174313 | None:intergenic | 70.0% | |
| GGATGATGCGGCGGAGGAGG+TGG | + | chr4_2:59174300-59174319 | None:intergenic | 70.0% | |
| GGTGGATGATGCGGCGGAGG+AGG | + | chr4_2:59174303-59174322 | None:intergenic | 70.0% | |
| GGGTGGAAGAGGAGAGGCGG+TGG | + | chr4_2:59174321-59174340 | None:intergenic | 70.0% | |
| TGCGGCGGAGGAGGTGGAAG+AGG | + | chr4_2:59174294-59174313 | None:intergenic | 70.0% | |
| GGATGATGCGGCGGAGGAGG+TGG | + | chr4_2:59174300-59174319 | None:intergenic | 70.0% | |
| GGTGGATGATGCGGCGGAGG+AGG | + | chr4_2:59174303-59174322 | None:intergenic | 70.0% | |
| GGGTGGAAGAGGAGAGGCGG+TGG | + | chr4_2:59174321-59174340 | None:intergenic | 70.0% | |
| GGCGGTGGATGATGCGGCGG+AGG | + | chr4_2:59174306-59174325 | None:intergenic | 75.0% | |
| GGCGGTGGATGATGCGGCGG+AGG | + | chr4_2:59174306-59174325 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59174134 | 59175066 | 59174134 | ID=Msa0611110;Name=Msa0611110 |
| chr4_2 | mRNA | 59174134 | 59175066 | 59174134 | ID=Msa0611110-mRNA-1;Parent=Msa0611110;Name=Msa0611110-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|310 |
| chr4_2 | exon | 59174134 | 59175066 | 59174134 | ID=Msa0611110-mRNA-1:exon:15679;Parent=Msa0611110-mRNA-1 |
| chr4_2 | CDS | 59174134 | 59175066 | 59174134 | ID=Msa0611110-mRNA-1:cds;Parent=Msa0611110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
