Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713700 | XP_003611556.1 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713700 | sp|Q564G7|GMGT1_CYATE | 63.636 | 440 | 143 | 4 | 15 | 444 | 1 | 433 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713700 | G7K2G3 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025580 | Msa0713700 | 0.806854 | 6.719294e-50 | -8.615850e-47 |
| Msa0034210 | Msa0713700 | 0.823199 | 1.575314e-53 | -8.615850e-47 |
| Msa0050660 | Msa0713700 | 0.844345 | 8.007650e-59 | -8.615850e-47 |
| Msa0050700 | Msa0713700 | 0.841559 | 4.414654e-58 | -8.615850e-47 |
| Msa0050790 | Msa0713700 | 0.846547 | 2.027854e-59 | -8.615850e-47 |
| Msa0073120 | Msa0713700 | 0.800235 | 1.585400e-48 | -8.615850e-47 |
| Msa0090400 | Msa0713700 | 0.829323 | 5.489801e-55 | -8.615850e-47 |
| Msa0611110 | Msa0713700 | 0.817490 | 3.209520e-52 | -8.615850e-47 |
| Msa0644410 | Msa0713700 | 0.848850 | 4.711113e-60 | -8.615850e-47 |
| Msa0675330 | Msa0713700 | 0.824398 | 8.249340e-54 | -8.615850e-47 |
| Msa0700460 | Msa0713700 | 0.806170 | 9.368058e-50 | -8.615850e-47 |
| Msa0709110 | Msa0713700 | 0.817868 | 2.638075e-52 | -8.615850e-47 |
| Msa0713700 | Msa0738700 | 0.803412 | 3.529759e-49 | -8.615850e-47 |
| Msa0713700 | Msa0778550 | 0.810903 | 9.144822e-51 | -8.615850e-47 |
| Msa0713700 | Msa0819170 | 0.809407 | 1.921339e-50 | -8.615850e-47 |
| Msa0713700 | Msa0824450 | 0.820878 | 5.433696e-53 | -8.615850e-47 |
| Msa0713700 | Msa0835160 | 0.889667 | 1.973175e-73 | -8.615850e-47 |
| Msa0713700 | Msa0843050 | 0.804853 | 1.769718e-49 | -8.615850e-47 |
| Msa0713700 | Msa0859290 | 0.811471 | 6.885049e-51 | -8.615850e-47 |
| Msa0713700 | Msa0981320 | 0.838885 | 2.204611e-57 | -8.615850e-47 |
| Msa0713700 | Msa1042160 | 0.850668 | 1.463650e-60 | -8.615850e-47 |
| Msa0713700 | Msa1042190 | 0.850101 | 2.111315e-60 | -8.615850e-47 |
| Msa0713700 | Msa1080000 | 0.814265 | 1.681988e-51 | -8.615850e-47 |
| Msa0713700 | Msa1116220 | 0.801196 | 1.009439e-48 | -8.615850e-47 |
| Msa0713700 | Msa1117920 | 0.810027 | 1.413937e-50 | -8.615850e-47 |
| Msa0713700 | Msa1123210 | 0.820556 | 6.442943e-53 | -8.615850e-47 |
| Msa0713700 | Msa1161680 | 0.811411 | 7.097788e-51 | -8.615850e-47 |
| Msa0713700 | Msa1167470 | 0.847135 | 1.400333e-59 | -8.615850e-47 |
| Msa0713700 | Msa1223470 | 0.823982 | 1.032876e-53 | -8.615850e-47 |
| Msa0713700 | Msa1240770 | 0.808433 | 3.104921e-50 | -8.615850e-47 |
| Msa0713700 | Msa1343180 | 0.803038 | 4.218253e-49 | -8.615850e-47 |
| Msa0713700 | Msa1393780 | 0.824260 | 8.888792e-54 | -8.615850e-47 |
| Msa0713700 | Msa1409410 | 0.809404 | 1.924060e-50 | -8.615850e-47 |
| Msa0713700 | Msa1415540 | 0.817373 | 3.411495e-52 | -8.615850e-47 |
| Msa0713700 | Msa1440630 | 0.840537 | 8.193092e-58 | -8.615850e-47 |
| Msa0713700 | Msa1452140 | 0.818829 | 1.597945e-52 | -8.615850e-47 |
| Msa0128310 | Msa0713700 | 0.835091 | 2.053540e-56 | -8.615850e-47 |
| Msa0137880 | Msa0713700 | 0.822161 | 2.746825e-53 | -8.615850e-47 |
| Msa0140280 | Msa0713700 | 0.814246 | 1.698754e-51 | -8.615850e-47 |
| Msa0149350 | Msa0713700 | 0.820095 | 8.222046e-53 | -8.615850e-47 |
| Msa0174440 | Msa0713700 | 0.826407 | 2.758936e-54 | -8.615850e-47 |
| Msa0174450 | Msa0713700 | 0.805861 | 1.088040e-49 | -8.615850e-47 |
| Msa0190570 | Msa0713700 | 0.804480 | 2.117225e-49 | -8.615850e-47 |
| Msa0222560 | Msa0713700 | 0.825272 | 5.129932e-54 | -8.615850e-47 |
| Msa0369790 | Msa0713700 | 0.810514 | 1.109707e-50 | -8.615850e-47 |
| Msa0380670 | Msa0713700 | 0.818820 | 1.605279e-52 | -8.615850e-47 |
| Msa0390970 | Msa0713700 | 0.833960 | 3.950455e-56 | -8.615850e-47 |
| Msa0426530 | Msa0713700 | 0.807662 | 4.530339e-50 | -8.615850e-47 |
| Msa0430260 | Msa0713700 | 0.801313 | 9.550148e-49 | -8.615850e-47 |
| Msa0430300 | Msa0713700 | 0.826048 | 3.358461e-54 | -8.615850e-47 |
| Msa0435210 | Msa0713700 | 0.804105 | 2.534489e-49 | -8.615850e-47 |
| Msa0442830 | Msa0713700 | 0.811816 | 5.792691e-51 | -8.615850e-47 |
| Msa0464000 | Msa0713700 | 0.810411 | 1.168177e-50 | -8.615850e-47 |
| Msa0472950 | Msa0713700 | 0.825327 | 4.979105e-54 | -8.615850e-47 |
| Msa0267110 | Msa0713700 | 0.811740 | 6.020052e-51 | -8.615850e-47 |
| Msa0301820 | Msa0713700 | 0.811054 | 8.482166e-51 | -8.615850e-47 |
| Msa0509550 | Msa0713700 | 0.811914 | 5.516539e-51 | -8.615850e-47 |
| Msa0517250 | Msa0713700 | 0.821632 | 3.641692e-53 | -8.615850e-47 |
| Msa0528570 | Msa0713700 | 0.828087 | 1.092199e-54 | -8.615850e-47 |
| Msa0541300 | Msa0713700 | 0.827536 | 1.481720e-54 | -8.615850e-47 |
| Msa0541310 | Msa0713700 | 0.825664 | 4.143365e-54 | -8.615850e-47 |
| Msa0548470 | Msa0713700 | 0.834488 | 2.911014e-56 | -8.615850e-47 |
| Msa0550050 | Msa0713700 | 0.807177 | 5.740840e-50 | -8.615850e-47 |
| Msa0557460 | Msa0713700 | 0.828636 | 8.050473e-55 | -8.615850e-47 |
| Msa0584420 | Msa0713700 | 0.801845 | 7.428284e-49 | -8.615850e-47 |
| Msa0585020 | Msa0713700 | 0.822891 | 1.858573e-53 | -8.615850e-47 |
| Msa0587620 | Msa0713700 | 0.803042 | 4.209355e-49 | -8.615850e-47 |
| Msa0597270 | Msa0713700 | 0.830776 | 2.427699e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713700 | MtrunA17_Chr5g0401011 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0.0 | 914 |
| Msa0713700 | MtrunA17_Chr4g0054201 | 63.311 | 447 | 151 | 4 | 8 | 446 | 442 | 883 | 0.0 | 593 |
| Msa0713700 | MtrunA17_Chr4g0054201 | 58.286 | 350 | 137 | 2 | 81 | 427 | 60 | 403 | 1.24e-151 | 452 |
| Msa0713700 | MtrunA17_Chr4g0061061 | 46.857 | 350 | 146 | 7 | 85 | 431 | 100 | 412 | 2.87e-110 | 332 |
| Msa0713700 | MtrunA17_Chr4g0067341 | 44.536 | 366 | 159 | 7 | 90 | 446 | 107 | 437 | 3.41e-110 | 332 |
| Msa0713700 | MtrunA17_Chr7g0269221 | 44.828 | 348 | 154 | 6 | 95 | 439 | 124 | 436 | 2.69e-108 | 328 |
| Msa0713700 | MtrunA17_Chr3g0091621 | 40.426 | 423 | 203 | 10 | 19 | 431 | 34 | 417 | 9.65e-106 | 321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713700 | AT2G22900.1 | 62.584 | 449 | 163 | 4 | 1 | 446 | 1 | 447 | 0.0 | 573 |
| Msa0713700 | AT4G37690.1 | 60.369 | 434 | 166 | 3 | 15 | 446 | 1 | 430 | 0.0 | 555 |
| Msa0713700 | AT5G07720.1 | 40.230 | 435 | 214 | 7 | 6 | 431 | 24 | 421 | 2.20e-114 | 343 |
| Msa0713700 | AT3G62720.2 | 47.246 | 345 | 144 | 6 | 95 | 436 | 117 | 426 | 2.41e-111 | 336 |
| Msa0713700 | AT3G62720.1 | 47.246 | 345 | 144 | 6 | 95 | 436 | 117 | 426 | 2.41e-111 | 336 |
| Msa0713700 | AT1G18690.3 | 43.501 | 377 | 174 | 6 | 57 | 431 | 141 | 480 | 5.89e-110 | 334 |
| Msa0713700 | AT1G18690.4 | 43.501 | 377 | 174 | 6 | 57 | 431 | 141 | 480 | 5.89e-110 | 334 |
| Msa0713700 | AT1G18690.2 | 43.501 | 377 | 174 | 6 | 57 | 431 | 141 | 480 | 5.89e-110 | 334 |
| Msa0713700 | AT1G18690.1 | 43.501 | 377 | 174 | 6 | 57 | 431 | 141 | 480 | 5.89e-110 | 334 |
| Msa0713700 | AT1G74380.1 | 45.349 | 344 | 151 | 5 | 90 | 431 | 114 | 422 | 2.11e-109 | 331 |
| Msa0713700 | AT4G02500.1 | 43.909 | 353 | 160 | 4 | 90 | 439 | 113 | 430 | 5.30e-108 | 327 |
| Msa0713700 | AT4G38310.1 | 69.231 | 117 | 35 | 1 | 78 | 193 | 1 | 117 | 4.12e-55 | 179 |
Find 108 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAGTTATTCGTAAATT+TGG | 0.144278 | 5_1:-6024505 | Msa0713700:CDS |
| TCCTAAGATGTTTGCTTATT+GGG | 0.175052 | 5_1:-6025241 | Msa0713700:CDS |
| TTCATCCCAGTCGTCTATTT+TGG | 0.194915 | 5_1:+6025461 | None:intergenic |
| ATCCTAAGATGTTTGCTTAT+TGG | 0.207679 | 5_1:-6025242 | Msa0713700:CDS |
| TATAGAAGAAGATTTGTTTC+TGG | 0.226424 | 5_1:+6025698 | None:intergenic |
| CACCAGATCCACTCTGCTTC+TGG | 0.247207 | 5_1:+6025180 | None:intergenic |
| TTACCCCATTCTTCATAATC+TGG | 0.308324 | 5_1:+6024949 | None:intergenic |
| GTCATGGTATACTCCATTTC+AGG | 0.314443 | 5_1:+6025486 | None:intergenic |
| ATAGAAGAAGATTTGTTTCT+GGG | 0.318466 | 5_1:+6025699 | None:intergenic |
| ATGGAGGCTTGGGCTGGAAT+GGG | 0.324947 | 5_1:-6024982 | Msa0713700:CDS |
| CATGGAGGCTTGGGCTGGAA+TGG | 0.334539 | 5_1:-6024983 | Msa0713700:CDS |
| GCCCAATAAGCAAACATCTT+AGG | 0.336434 | 5_1:+6025240 | None:intergenic |
| TTAAGGTGAGGTTGTCGTTT+GGG | 0.336884 | 5_1:+6025589 | None:intergenic |
| AATATTACTTCGAGGGGTAT+TGG | 0.338476 | 5_1:-6024807 | Msa0713700:CDS |
| GTGGATTACTCTCGTATTCA+TGG | 0.344402 | 5_1:-6025297 | Msa0713700:CDS |
| TCTGATGGCTTCCTCTTCCT+TGG | 0.345544 | 5_1:-6025669 | Msa0713700:CDS |
| TCAATGGTCATTAGATTTCA+TGG | 0.346153 | 5_1:-6025001 | Msa0713700:CDS |
| CAGGATCATCGTAGAATGTT+TGG | 0.347067 | 5_1:+6025505 | None:intergenic |
| AACAACAAATGGTCACCTAT+TGG | 0.350530 | 5_1:+6025339 | None:intergenic |
| GTGAGGTTGTCGTTTGGGAT+GGG | 0.352772 | 5_1:+6025594 | None:intergenic |
| TCTTCATAATCTGGGCTTTG+TGG | 0.354799 | 5_1:+6024958 | None:intergenic |
| GATCATAACCTTGTTGTTCA+TGG | 0.356395 | 5_1:-6025096 | Msa0713700:CDS |
| ATCATTGCAGCTTTCACAAC+AGG | 0.362566 | 5_1:+6025210 | None:intergenic |
| ATTAGATTTCATGGAGGCTT+GGG | 0.362925 | 5_1:-6024992 | Msa0713700:CDS |
| CATGAGAAACGGAGCTGGAC+TGG | 0.370520 | 5_1:-6025057 | Msa0713700:CDS |
| ATATTACTTCGAGGGGTATT+GGG | 0.374107 | 5_1:-6024806 | Msa0713700:CDS |
| CATAAAGATCTTGGGGATAA+TGG | 0.376635 | 5_1:-6024475 | Msa0713700:CDS |
| CATTAGATTTCATGGAGGCT+TGG | 0.381012 | 5_1:-6024993 | Msa0713700:CDS |
| GGTGAGGTTGTCGTTTGGGA+TGG | 0.382979 | 5_1:+6025593 | None:intergenic |
| GAAGATTTGTTTCTGGGAAT+GGG | 0.385239 | 5_1:+6025705 | None:intergenic |
| TATTTGAAAGATGCTGGTTA+TGG | 0.388530 | 5_1:-6024658 | Msa0713700:CDS |
| AGAAGATTTGTTTCTGGGAA+TGG | 0.391546 | 5_1:+6025704 | None:intergenic |
| TACCCCATTCTTCATAATCT+GGG | 0.392557 | 5_1:+6024950 | None:intergenic |
| TGAAGAATCTTAACAACAAA+TGG | 0.394171 | 5_1:+6025328 | None:intergenic |
| CTGGTTATGGTAAAGGAAGT+TGG | 0.399264 | 5_1:-6024645 | Msa0713700:CDS |
| TGAGGTTGTCGTTTGGGATG+GGG | 0.405083 | 5_1:+6025595 | None:intergenic |
| TGTACACTGCTGATGCTTGT+TGG | 0.406742 | 5_1:-6024561 | Msa0713700:CDS |
| GAAGAGTATTTGAAAGATGC+TGG | 0.407850 | 5_1:-6024664 | Msa0713700:CDS |
| CTTCATAATCTGGGCTTTGT+GGG | 0.412052 | 5_1:+6024959 | None:intergenic |
| TCTTCTATATTTCTCTCTGA+TGG | 0.418803 | 5_1:-6025684 | Msa0713700:CDS |
| ATCCAGAAGCAGAGTGGATC+TGG | 0.420997 | 5_1:-6025182 | Msa0713700:CDS |
| TTTAAGGTGAGGTTGTCGTT+TGG | 0.424610 | 5_1:+6025588 | None:intergenic |
| GATGGCTTCCTCTTCCTTGG+AGG | 0.432600 | 5_1:-6025666 | Msa0713700:CDS |
| AGCAAAGGAAAGAGTGTTGA+TGG | 0.438346 | 5_1:-6025394 | Msa0713700:CDS |
| ATAACCTTGTTGTTCATGGC+TGG | 0.442241 | 5_1:-6025092 | Msa0713700:CDS |
| AAAGATGCTGGTTATGGTAA+AGG | 0.444724 | 5_1:-6024652 | Msa0713700:CDS |
| GATTTCATGGAGGCTTGGGC+TGG | 0.447837 | 5_1:-6024988 | Msa0713700:CDS |
| AAGCCCAGATTATGAAGAAT+GGG | 0.454167 | 5_1:-6024953 | Msa0713700:CDS |
| ATTCTACGATGATCCTGAAA+TGG | 0.454311 | 5_1:-6025499 | Msa0713700:CDS |
| GGTGGATCAAAGCGCAGATC+GGG | 0.455974 | 5_1:+6025531 | None:intergenic |
| ACTGCTGATGCTTGTTGGAA+TGG | 0.456658 | 5_1:-6024556 | Msa0713700:CDS |
| TTTCTCGATCGCGATCAGAT+AGG | 0.459063 | 5_1:+6024864 | None:intergenic |
| CCTGTAAAATGTGTAACAAA+TGG | 0.462913 | 5_1:+6024616 | None:intergenic |
| CTGCTGATGCTTGTTGGAAT+GGG | 0.463785 | 5_1:-6024555 | Msa0713700:CDS |
| CATCATCCGTCTTTCTCTGC+AGG | 0.478033 | 5_1:-6025417 | Msa0713700:CDS |
| TCTCCGTGCAAGAATCCAAT+AGG | 0.480437 | 5_1:-6025354 | Msa0713700:CDS |
| GCCTGTCTGATCGTCTGACT+CGG | 0.492017 | 5_1:+6024891 | None:intergenic |
| GAAAGAGTGTTGATGGTCAC+TGG | 0.495025 | 5_1:-6025387 | Msa0713700:CDS |
| TCATTATACTTCCCACTACA+AGG | 0.496339 | 5_1:+6024586 | None:intergenic |
| GCATGACGCCTTCTTAACTT+AGG | 0.496571 | 5_1:+6024721 | None:intergenic |
| CTCACTTGATCCATGAGAAA+CGG | 0.497365 | 5_1:-6025068 | Msa0713700:CDS |
| AAAGCCCAGATTATGAAGAA+TGG | 0.499353 | 5_1:-6024954 | Msa0713700:CDS |
| CAGTCCAGCTCCGTTTCTCA+TGG | 0.499397 | 5_1:+6025058 | None:intergenic |
| ATGAGAAACGGAGCTGGACT+GGG | 0.501194 | 5_1:-6025056 | Msa0713700:CDS |
| ATTTGTCTTTAAAAGTTGAC+CGG | 0.502606 | 5_1:+6024920 | None:intergenic |
| AAGAATGGGGTAAGACTCTC+CGG | 0.506398 | 5_1:-6024939 | Msa0713700:CDS |
| ATTGGATTCTTGCACGGAGA+AGG | 0.509563 | 5_1:+6025357 | None:intergenic |
| GCTTCCTCTCAAACGTTACA+AGG | 0.512911 | 5_1:-6025118 | Msa0713700:CDS |
| TCGTAGAATGTTTGGTCTGG+TGG | 0.513684 | 5_1:+6025513 | None:intergenic |
| AGATGCATTGTTCACCGACA+TGG | 0.516301 | 5_1:-6025148 | Msa0713700:CDS |
| GCTGACAAGATTTATCTAGA+AGG | 0.520122 | 5_1:-6024832 | Msa0713700:CDS |
| CATTCTTGAGGATAATCAAA+AGG | 0.522976 | 5_1:+6024439 | None:intergenic |
| CCCGAGTCAGACGATCAGAC+AGG | 0.525329 | 5_1:-6024892 | Msa0713700:CDS |
| TCATCGTAGAATGTTTGGTC+TGG | 0.529616 | 5_1:+6025510 | None:intergenic |
| TGACCACCAAAATAGACGAC+TGG | 0.534163 | 5_1:-6025467 | Msa0713700:CDS |
| GGGTATTGGGAAGAGATAGT+AGG | 0.535734 | 5_1:-6024793 | Msa0713700:CDS |
| GTCTTTCTCTGCAGGAGCAA+AGG | 0.536163 | 5_1:-6025409 | Msa0713700:CDS |
| AAAATGCTCCTCCAAGGAAG+AGG | 0.536323 | 5_1:+6025658 | None:intergenic |
| TGATCCATGAGAAACGGAGC+TGG | 0.538704 | 5_1:-6025062 | Msa0713700:CDS |
| GTTTGGGATGGGGTTTGTGA+AGG | 0.539018 | 5_1:+6025605 | None:intergenic |
| GAGAAAGTGAGTGAAGCTTA+TGG | 0.543266 | 5_1:-6024697 | Msa0713700:CDS |
| TTTGCTCCTGCAGAGAAAGA+CGG | 0.551182 | 5_1:+6025411 | None:intergenic |
| TGTTGTGAAAGCTGCAATGA+TGG | 0.556012 | 5_1:-6025208 | Msa0713700:CDS |
| TGGTGGATCAAAGCGCAGAT+CGG | 0.556690 | 5_1:+6025530 | None:intergenic |
| ACAGGTTGTCAACCTTGTAG+TGG | 0.558357 | 5_1:-6024598 | Msa0713700:CDS |
| AAGTTGAGCCTAAGTTAAGA+AGG | 0.567104 | 5_1:-6024729 | Msa0713700:CDS |
| CCTGTCTGATCGTCTGACTC+GGG | 0.569637 | 5_1:+6024892 | None:intergenic |
| CAGGTTGTCAACCTTGTAGT+GGG | 0.588604 | 5_1:-6024597 | Msa0713700:CDS |
| ATGAAGCATAATCATTCTTG+AGG | 0.588958 | 5_1:+6024427 | None:intergenic |
| GAGCTGAAAATGCTCCTCCA+AGG | 0.589197 | 5_1:+6025652 | None:intergenic |
| GAAGGCGAATATTACTTCGA+GGG | 0.591672 | 5_1:-6024814 | Msa0713700:CDS |
| AGAAGGCGAATATTACTTCG+AGG | 0.599202 | 5_1:-6024815 | Msa0713700:CDS |
| TGATCCTTGTAACGTTTGAG+AGG | 0.599914 | 5_1:+6025114 | None:intergenic |
| TCACCTATTGGATTCTTGCA+CGG | 0.608907 | 5_1:+6025351 | None:intergenic |
| GACCACCAAAATAGACGACT+GGG | 0.610284 | 5_1:-6025466 | Msa0713700:CDS |
| CAGAAGCAGAGTGGATCTGG+TGG | 0.614112 | 5_1:-6025179 | Msa0713700:CDS |
| AGCTGGACTGGGTTAAACGC+TGG | 0.635344 | 5_1:-6025045 | Msa0713700:CDS |
| TCATTGCAGCTTTCACAACA+GGG | 0.636937 | 5_1:+6025211 | None:intergenic |
| CGTTTCTCATGGATCAAGTG+AGG | 0.643998 | 5_1:+6025069 | None:intergenic |
| AAGGCGAATATTACTTCGAG+GGG | 0.647787 | 5_1:-6024813 | Msa0713700:CDS |
| AGGAAGCTTGAAATCCATGT+CGG | 0.666037 | 5_1:+6025134 | None:intergenic |
| GGGATGAAAAGCGTGAGGAG+TGG | 0.666595 | 5_1:-6025446 | Msa0713700:CDS |
| AGAAGCAGAGTGGATCTGGT+GGG | 0.667841 | 5_1:-6025178 | Msa0713700:CDS |
| AGCCCAGATTATGAAGAATG+GGG | 0.678392 | 5_1:-6024952 | Msa0713700:CDS |
| CGACTGGGATGAAAAGCGTG+AGG | 0.682004 | 5_1:-6025451 | Msa0713700:CDS |
| GAGGCCAGCCATGAACAACA+AGG | 0.700083 | 5_1:+6025088 | None:intergenic |
| TGGCACATCCAGAAGCAGAG+TGG | 0.700260 | 5_1:-6025188 | Msa0713700:CDS |
| ATGGTCATTAGATTTCATGG+AGG | 0.731958 | 5_1:-6024998 | Msa0713700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTCTTCAAAAATAAAG+TGG | - | chr5_1:6024878-6024897 | Msa0713700:CDS | 20.0% |
| !! | AATCAAGTTATTCGTAAATT+TGG | - | chr5_1:6025689-6025708 | Msa0713700:CDS | 20.0% |
| !! | AAGATTCTTCAAAAATAAAG+TGG | - | chr5_1:6024878-6024897 | Msa0713700:CDS | 20.0% |
| !! | AATCAAGTTATTCGTAAATT+TGG | - | chr5_1:6025689-6025708 | Msa0713700:CDS | 20.0% |
| !! | ATAGAAGAAGATTTGTTTCT+GGG | + | chr5_1:6024498-6024517 | None:intergenic | 25.0% |
| !! | TATAGAAGAAGATTTGTTTC+TGG | + | chr5_1:6024499-6024518 | None:intergenic | 25.0% |
| ! | TGAAGAATCTTAACAACAAA+TGG | + | chr5_1:6024869-6024888 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTAAAAGTTGAC+CGG | + | chr5_1:6025277-6025296 | None:intergenic | 25.0% |
| !! | ATAGAAGAAGATTTGTTTCT+GGG | + | chr5_1:6024498-6024517 | None:intergenic | 25.0% |
| !! | TATAGAAGAAGATTTGTTTC+TGG | + | chr5_1:6024499-6024518 | None:intergenic | 25.0% |
| ! | TGAAGAATCTTAACAACAAA+TGG | + | chr5_1:6024869-6024888 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTAAAAGTTGAC+CGG | + | chr5_1:6025277-6025296 | None:intergenic | 25.0% |
| TCTTCTATATTTCTCTCTGA+TGG | - | chr5_1:6024510-6024529 | Msa0713700:CDS | 30.0% | |
| ! | TTTCAGCTCTTTTACTTGTT+TGG | - | chr5_1:6024556-6024575 | Msa0713700:CDS | 30.0% |
| ! | TTCAGCTCTTTTACTTGTTT+GGG | - | chr5_1:6024557-6024576 | Msa0713700:CDS | 30.0% |
| !!! | GTTGTTTTTGTGAGGTTTTA+AGG | + | chr5_1:6024625-6024644 | None:intergenic | 30.0% |
| ATCCTAAGATGTTTGCTTAT+TGG | - | chr5_1:6024952-6024971 | Msa0713700:CDS | 30.0% | |
| TCCTAAGATGTTTGCTTATT+GGG | - | chr5_1:6024953-6024972 | Msa0713700:CDS | 30.0% | |
| TCAATGGTCATTAGATTTCA+TGG | - | chr5_1:6025193-6025212 | Msa0713700:CDS | 30.0% | |
| ! | TATTTGAAAGATGCTGGTTA+TGG | - | chr5_1:6025536-6025555 | Msa0713700:CDS | 30.0% |
| CCTGTAAAATGTGTAACAAA+TGG | + | chr5_1:6025581-6025600 | None:intergenic | 30.0% | |
| !! | CCATTTGTTACACATTTTAC+AGG | - | chr5_1:6025578-6025597 | Msa0713700:CDS | 30.0% |
| ! | GTTTTGTGCATAAAGATCTT+GGG | - | chr5_1:6025711-6025730 | Msa0713700:CDS | 30.0% |
| ! | TTTTGTGCATAAAGATCTTG+GGG | - | chr5_1:6025712-6025731 | Msa0713700:CDS | 30.0% |
| CATTCTTGAGGATAATCAAA+AGG | + | chr5_1:6025758-6025777 | None:intergenic | 30.0% | |
| TCTTCTATATTTCTCTCTGA+TGG | - | chr5_1:6024510-6024529 | Msa0713700:CDS | 30.0% | |
| ! | TTTCAGCTCTTTTACTTGTT+TGG | - | chr5_1:6024556-6024575 | Msa0713700:CDS | 30.0% |
| ! | TTCAGCTCTTTTACTTGTTT+GGG | - | chr5_1:6024557-6024576 | Msa0713700:CDS | 30.0% |
| !!! | GTTGTTTTTGTGAGGTTTTA+AGG | + | chr5_1:6024625-6024644 | None:intergenic | 30.0% |
| ATCCTAAGATGTTTGCTTAT+TGG | - | chr5_1:6024952-6024971 | Msa0713700:CDS | 30.0% | |
| TCCTAAGATGTTTGCTTATT+GGG | - | chr5_1:6024953-6024972 | Msa0713700:CDS | 30.0% | |
| TCAATGGTCATTAGATTTCA+TGG | - | chr5_1:6025193-6025212 | Msa0713700:CDS | 30.0% | |
| ! | TATTTGAAAGATGCTGGTTA+TGG | - | chr5_1:6025536-6025555 | Msa0713700:CDS | 30.0% |
| CCTGTAAAATGTGTAACAAA+TGG | + | chr5_1:6025581-6025600 | None:intergenic | 30.0% | |
| !! | CCATTTGTTACACATTTTAC+AGG | - | chr5_1:6025578-6025597 | Msa0713700:CDS | 30.0% |
| ! | GTTTTGTGCATAAAGATCTT+GGG | - | chr5_1:6025711-6025730 | Msa0713700:CDS | 30.0% |
| ! | TTTTGTGCATAAAGATCTTG+GGG | - | chr5_1:6025712-6025731 | Msa0713700:CDS | 30.0% |
| CATTCTTGAGGATAATCAAA+AGG | + | chr5_1:6025758-6025777 | None:intergenic | 30.0% | |
| !! | GAAGATTTGTTTCTGGGAAT+GGG | + | chr5_1:6024492-6024511 | None:intergenic | 35.0% |
| !! | AGAAGATTTGTTTCTGGGAA+TGG | + | chr5_1:6024493-6024512 | None:intergenic | 35.0% |
| ! | TCAGCTCTTTTACTTGTTTG+GGG | - | chr5_1:6024558-6024577 | Msa0713700:CDS | 35.0% |
| !!! | TTTTGTGAGGTTTTAAGGTG+AGG | + | chr5_1:6024620-6024639 | None:intergenic | 35.0% |
| !!! | GAAACAACGTTGTTTTTGTG+AGG | + | chr5_1:6024633-6024652 | None:intergenic | 35.0% |
| ATTCTACGATGATCCTGAAA+TGG | - | chr5_1:6024695-6024714 | Msa0713700:CDS | 35.0% | |
| AACAACAAATGGTCACCTAT+TGG | + | chr5_1:6024858-6024877 | None:intergenic | 35.0% | |
| !! | GATCATAACCTTGTTGTTCA+TGG | - | chr5_1:6025098-6025117 | Msa0713700:CDS | 35.0% |
| ! | TTTTGATCAGGAACTGTCAA+TGG | - | chr5_1:6025177-6025196 | Msa0713700:CDS | 35.0% |
| ATGGTCATTAGATTTCATGG+AGG | - | chr5_1:6025196-6025215 | Msa0713700:CDS | 35.0% | |
| ATTAGATTTCATGGAGGCTT+GGG | - | chr5_1:6025202-6025221 | Msa0713700:CDS | 35.0% | |
| AAAGCCCAGATTATGAAGAA+TGG | - | chr5_1:6025240-6025259 | Msa0713700:CDS | 35.0% | |
| AAGCCCAGATTATGAAGAAT+GGG | - | chr5_1:6025241-6025260 | Msa0713700:CDS | 35.0% | |
| TACCCCATTCTTCATAATCT+GGG | + | chr5_1:6025247-6025266 | None:intergenic | 35.0% | |
| TTACCCCATTCTTCATAATC+TGG | + | chr5_1:6025248-6025267 | None:intergenic | 35.0% | |
| GCTGACAAGATTTATCTAGA+AGG | - | chr5_1:6025362-6025381 | Msa0713700:CDS | 35.0% | |
| ! | AATATTACTTCGAGGGGTAT+TGG | - | chr5_1:6025387-6025406 | Msa0713700:CDS | 35.0% |
| !! | ATATTACTTCGAGGGGTATT+GGG | - | chr5_1:6025388-6025407 | Msa0713700:CDS | 35.0% |
| AAGTTGAGCCTAAGTTAAGA+AGG | - | chr5_1:6025465-6025484 | Msa0713700:CDS | 35.0% | |
| !! | GAAGAGTATTTGAAAGATGC+TGG | - | chr5_1:6025530-6025549 | Msa0713700:CDS | 35.0% |
| ! | AAAGATGCTGGTTATGGTAA+AGG | - | chr5_1:6025542-6025561 | Msa0713700:CDS | 35.0% |
| TCATTATACTTCCCACTACA+AGG | + | chr5_1:6025611-6025630 | None:intergenic | 35.0% | |
| !! | GGTTTTGTGCATAAAGATCT+TGG | - | chr5_1:6025710-6025729 | Msa0713700:CDS | 35.0% |
| CATAAAGATCTTGGGGATAA+TGG | - | chr5_1:6025719-6025738 | Msa0713700:CDS | 35.0% | |
| !! | GAAGATTTGTTTCTGGGAAT+GGG | + | chr5_1:6024492-6024511 | None:intergenic | 35.0% |
| !! | AGAAGATTTGTTTCTGGGAA+TGG | + | chr5_1:6024493-6024512 | None:intergenic | 35.0% |
| ! | TCAGCTCTTTTACTTGTTTG+GGG | - | chr5_1:6024558-6024577 | Msa0713700:CDS | 35.0% |
| !!! | TTTTGTGAGGTTTTAAGGTG+AGG | + | chr5_1:6024620-6024639 | None:intergenic | 35.0% |
| !!! | GAAACAACGTTGTTTTTGTG+AGG | + | chr5_1:6024633-6024652 | None:intergenic | 35.0% |
| ATTCTACGATGATCCTGAAA+TGG | - | chr5_1:6024695-6024714 | Msa0713700:CDS | 35.0% | |
| AACAACAAATGGTCACCTAT+TGG | + | chr5_1:6024858-6024877 | None:intergenic | 35.0% | |
| !! | GATCATAACCTTGTTGTTCA+TGG | - | chr5_1:6025098-6025117 | Msa0713700:CDS | 35.0% |
| ! | TTTTGATCAGGAACTGTCAA+TGG | - | chr5_1:6025177-6025196 | Msa0713700:CDS | 35.0% |
| ATGGTCATTAGATTTCATGG+AGG | - | chr5_1:6025196-6025215 | Msa0713700:CDS | 35.0% | |
| ATTAGATTTCATGGAGGCTT+GGG | - | chr5_1:6025202-6025221 | Msa0713700:CDS | 35.0% | |
| AAAGCCCAGATTATGAAGAA+TGG | - | chr5_1:6025240-6025259 | Msa0713700:CDS | 35.0% | |
| AAGCCCAGATTATGAAGAAT+GGG | - | chr5_1:6025241-6025260 | Msa0713700:CDS | 35.0% | |
| TACCCCATTCTTCATAATCT+GGG | + | chr5_1:6025247-6025266 | None:intergenic | 35.0% | |
| TTACCCCATTCTTCATAATC+TGG | + | chr5_1:6025248-6025267 | None:intergenic | 35.0% | |
| GCTGACAAGATTTATCTAGA+AGG | - | chr5_1:6025362-6025381 | Msa0713700:CDS | 35.0% | |
| ! | AATATTACTTCGAGGGGTAT+TGG | - | chr5_1:6025387-6025406 | Msa0713700:CDS | 35.0% |
| !! | ATATTACTTCGAGGGGTATT+GGG | - | chr5_1:6025388-6025407 | Msa0713700:CDS | 35.0% |
| AAGTTGAGCCTAAGTTAAGA+AGG | - | chr5_1:6025465-6025484 | Msa0713700:CDS | 35.0% | |
| !! | GAAGAGTATTTGAAAGATGC+TGG | - | chr5_1:6025530-6025549 | Msa0713700:CDS | 35.0% |
| ! | AAAGATGCTGGTTATGGTAA+AGG | - | chr5_1:6025542-6025561 | Msa0713700:CDS | 35.0% |
| TCATTATACTTCCCACTACA+AGG | + | chr5_1:6025611-6025630 | None:intergenic | 35.0% | |
| !! | GGTTTTGTGCATAAAGATCT+TGG | - | chr5_1:6025710-6025729 | Msa0713700:CDS | 35.0% |
| CATAAAGATCTTGGGGATAA+TGG | - | chr5_1:6025719-6025738 | Msa0713700:CDS | 35.0% | |
| !! | CTCTCACTTTTCTTCCATCA+TGG | - | chr5_1:6024461-6024480 | Msa0713700:CDS | 40.0% |
| ! | TTAAGGTGAGGTTGTCGTTT+GGG | + | chr5_1:6024608-6024627 | None:intergenic | 40.0% |
| ! | TTTAAGGTGAGGTTGTCGTT+TGG | + | chr5_1:6024609-6024628 | None:intergenic | 40.0% |
| TCATCGTAGAATGTTTGGTC+TGG | + | chr5_1:6024687-6024706 | None:intergenic | 40.0% | |
| CAGGATCATCGTAGAATGTT+TGG | + | chr5_1:6024692-6024711 | None:intergenic | 40.0% | |
| GTCATGGTATACTCCATTTC+AGG | + | chr5_1:6024711-6024730 | None:intergenic | 40.0% | |
| ! | TTCATCCCAGTCGTCTATTT+TGG | + | chr5_1:6024736-6024755 | None:intergenic | 40.0% |
| !! | AGCAAAGGAAAGAGTGTTGA+TGG | - | chr5_1:6024800-6024819 | Msa0713700:CDS | 40.0% |
| TCACCTATTGGATTCTTGCA+CGG | + | chr5_1:6024846-6024865 | None:intergenic | 40.0% | |
| ! | GTGGATTACTCTCGTATTCA+TGG | - | chr5_1:6024897-6024916 | Msa0713700:CDS | 40.0% |
| GCCCAATAAGCAAACATCTT+AGG | + | chr5_1:6024957-6024976 | None:intergenic | 40.0% | |
| TCATTGCAGCTTTCACAACA+GGG | + | chr5_1:6024986-6025005 | None:intergenic | 40.0% | |
| ATCATTGCAGCTTTCACAAC+AGG | + | chr5_1:6024987-6025006 | None:intergenic | 40.0% | |
| TGTTGTGAAAGCTGCAATGA+TGG | - | chr5_1:6024986-6025005 | Msa0713700:CDS | 40.0% | |
| AGGAAGCTTGAAATCCATGT+CGG | + | chr5_1:6025063-6025082 | None:intergenic | 40.0% | |
| TGATCCTTGTAACGTTTGAG+AGG | + | chr5_1:6025083-6025102 | None:intergenic | 40.0% | |
| !! | ATAACCTTGTTGTTCATGGC+TGG | - | chr5_1:6025102-6025121 | Msa0713700:CDS | 40.0% |
| CTCACTTGATCCATGAGAAA+CGG | - | chr5_1:6025126-6025145 | Msa0713700:CDS | 40.0% | |
| CATTAGATTTCATGGAGGCT+TGG | - | chr5_1:6025201-6025220 | Msa0713700:CDS | 40.0% | |
| ! | CTTCATAATCTGGGCTTTGT+GGG | + | chr5_1:6025238-6025257 | None:intergenic | 40.0% |
| TCTTCATAATCTGGGCTTTG+TGG | + | chr5_1:6025239-6025258 | None:intergenic | 40.0% | |
| AGCCCAGATTATGAAGAATG+GGG | - | chr5_1:6025242-6025261 | Msa0713700:CDS | 40.0% | |
| TCGCGATCGAGAAAGAAAAA+TGG | - | chr5_1:6025339-6025358 | Msa0713700:CDS | 40.0% | |
| CGCGATCGAGAAAGAAAAAT+GGG | - | chr5_1:6025340-6025359 | Msa0713700:CDS | 40.0% | |
| AGAAGGCGAATATTACTTCG+AGG | - | chr5_1:6025379-6025398 | Msa0713700:CDS | 40.0% | |
| GAAGGCGAATATTACTTCGA+GGG | - | chr5_1:6025380-6025399 | Msa0713700:CDS | 40.0% | |
| AAGGCGAATATTACTTCGAG+GGG | - | chr5_1:6025381-6025400 | Msa0713700:CDS | 40.0% | |
| GAGAAAGTGAGTGAAGCTTA+TGG | - | chr5_1:6025497-6025516 | Msa0713700:CDS | 40.0% | |
| CTGGTTATGGTAAAGGAAGT+TGG | - | chr5_1:6025549-6025568 | Msa0713700:CDS | 40.0% | |
| !! | CTCTCACTTTTCTTCCATCA+TGG | - | chr5_1:6024461-6024480 | Msa0713700:CDS | 40.0% |
| ! | TTAAGGTGAGGTTGTCGTTT+GGG | + | chr5_1:6024608-6024627 | None:intergenic | 40.0% |
| ! | TTTAAGGTGAGGTTGTCGTT+TGG | + | chr5_1:6024609-6024628 | None:intergenic | 40.0% |
| TCATCGTAGAATGTTTGGTC+TGG | + | chr5_1:6024687-6024706 | None:intergenic | 40.0% | |
| CAGGATCATCGTAGAATGTT+TGG | + | chr5_1:6024692-6024711 | None:intergenic | 40.0% | |
| GTCATGGTATACTCCATTTC+AGG | + | chr5_1:6024711-6024730 | None:intergenic | 40.0% | |
| ! | TTCATCCCAGTCGTCTATTT+TGG | + | chr5_1:6024736-6024755 | None:intergenic | 40.0% |
| !! | AGCAAAGGAAAGAGTGTTGA+TGG | - | chr5_1:6024800-6024819 | Msa0713700:CDS | 40.0% |
| TCACCTATTGGATTCTTGCA+CGG | + | chr5_1:6024846-6024865 | None:intergenic | 40.0% | |
| ! | GTGGATTACTCTCGTATTCA+TGG | - | chr5_1:6024897-6024916 | Msa0713700:CDS | 40.0% |
| GCCCAATAAGCAAACATCTT+AGG | + | chr5_1:6024957-6024976 | None:intergenic | 40.0% | |
| TCATTGCAGCTTTCACAACA+GGG | + | chr5_1:6024986-6025005 | None:intergenic | 40.0% | |
| ATCATTGCAGCTTTCACAAC+AGG | + | chr5_1:6024987-6025006 | None:intergenic | 40.0% | |
| TGTTGTGAAAGCTGCAATGA+TGG | - | chr5_1:6024986-6025005 | Msa0713700:CDS | 40.0% | |
| AGGAAGCTTGAAATCCATGT+CGG | + | chr5_1:6025063-6025082 | None:intergenic | 40.0% | |
| TGATCCTTGTAACGTTTGAG+AGG | + | chr5_1:6025083-6025102 | None:intergenic | 40.0% | |
| !! | ATAACCTTGTTGTTCATGGC+TGG | - | chr5_1:6025102-6025121 | Msa0713700:CDS | 40.0% |
| CTCACTTGATCCATGAGAAA+CGG | - | chr5_1:6025126-6025145 | Msa0713700:CDS | 40.0% | |
| CATTAGATTTCATGGAGGCT+TGG | - | chr5_1:6025201-6025220 | Msa0713700:CDS | 40.0% | |
| ! | CTTCATAATCTGGGCTTTGT+GGG | + | chr5_1:6025238-6025257 | None:intergenic | 40.0% |
| TCTTCATAATCTGGGCTTTG+TGG | + | chr5_1:6025239-6025258 | None:intergenic | 40.0% | |
| AGCCCAGATTATGAAGAATG+GGG | - | chr5_1:6025242-6025261 | Msa0713700:CDS | 40.0% | |
| TCGCGATCGAGAAAGAAAAA+TGG | - | chr5_1:6025339-6025358 | Msa0713700:CDS | 40.0% | |
| CGCGATCGAGAAAGAAAAAT+GGG | - | chr5_1:6025340-6025359 | Msa0713700:CDS | 40.0% | |
| AGAAGGCGAATATTACTTCG+AGG | - | chr5_1:6025379-6025398 | Msa0713700:CDS | 40.0% | |
| GAAGGCGAATATTACTTCGA+GGG | - | chr5_1:6025380-6025399 | Msa0713700:CDS | 40.0% | |
| AAGGCGAATATTACTTCGAG+GGG | - | chr5_1:6025381-6025400 | Msa0713700:CDS | 40.0% | |
| GAGAAAGTGAGTGAAGCTTA+TGG | - | chr5_1:6025497-6025516 | Msa0713700:CDS | 40.0% | |
| CTGGTTATGGTAAAGGAAGT+TGG | - | chr5_1:6025549-6025568 | Msa0713700:CDS | 40.0% | |
| AAAATGCTCCTCCAAGGAAG+AGG | + | chr5_1:6024539-6024558 | None:intergenic | 45.0% | |
| TCGTAGAATGTTTGGTCTGG+TGG | + | chr5_1:6024684-6024703 | None:intergenic | 45.0% | |
| !!! | GTCGTCTATTTTGGTGGTCA+TGG | + | chr5_1:6024727-6024746 | None:intergenic | 45.0% |
| TGACCACCAAAATAGACGAC+TGG | - | chr5_1:6024727-6024746 | Msa0713700:CDS | 45.0% | |
| GACCACCAAAATAGACGACT+GGG | - | chr5_1:6024728-6024747 | Msa0713700:CDS | 45.0% | |
| !! | ATCCCAGTCGTCTATTTTGG+TGG | + | chr5_1:6024733-6024752 | None:intergenic | 45.0% |
| TTTGCTCCTGCAGAGAAAGA+CGG | + | chr5_1:6024786-6024805 | None:intergenic | 45.0% | |
| !! | GAAAGAGTGTTGATGGTCAC+TGG | - | chr5_1:6024807-6024826 | Msa0713700:CDS | 45.0% |
| ATTGGATTCTTGCACGGAGA+AGG | + | chr5_1:6024840-6024859 | None:intergenic | 45.0% | |
| TCTCCGTGCAAGAATCCAAT+AGG | - | chr5_1:6024840-6024859 | Msa0713700:CDS | 45.0% | |
| AGATGCATTGTTCACCGACA+TGG | - | chr5_1:6025046-6025065 | Msa0713700:CDS | 45.0% | |
| GCTTCCTCTCAAACGTTACA+AGG | - | chr5_1:6025076-6025095 | Msa0713700:CDS | 45.0% | |
| CGTTTCTCATGGATCAAGTG+AGG | + | chr5_1:6025128-6025147 | None:intergenic | 45.0% | |
| !! | ACGCTGGTGTGTTTTTGATC+AGG | - | chr5_1:6025165-6025184 | Msa0713700:CDS | 45.0% |
| AAGAATGGGGTAAGACTCTC+CGG | - | chr5_1:6025255-6025274 | Msa0713700:CDS | 45.0% | |
| TTTCTCGATCGCGATCAGAT+AGG | + | chr5_1:6025333-6025352 | None:intergenic | 45.0% | |
| !! | GGGTATTGGGAAGAGATAGT+AGG | - | chr5_1:6025401-6025420 | Msa0713700:CDS | 45.0% |
| GCATGACGCCTTCTTAACTT+AGG | + | chr5_1:6025476-6025495 | None:intergenic | 45.0% | |
| ACAGGTTGTCAACCTTGTAG+TGG | - | chr5_1:6025596-6025615 | Msa0713700:CDS | 45.0% | |
| CAGGTTGTCAACCTTGTAGT+GGG | - | chr5_1:6025597-6025616 | Msa0713700:CDS | 45.0% | |
| TGTACACTGCTGATGCTTGT+TGG | - | chr5_1:6025633-6025652 | Msa0713700:CDS | 45.0% | |
| ! | ACTGCTGATGCTTGTTGGAA+TGG | - | chr5_1:6025638-6025657 | Msa0713700:CDS | 45.0% |
| ! | CTGCTGATGCTTGTTGGAAT+GGG | - | chr5_1:6025639-6025658 | Msa0713700:CDS | 45.0% |
| AAAATGCTCCTCCAAGGAAG+AGG | + | chr5_1:6024539-6024558 | None:intergenic | 45.0% | |
| TCGTAGAATGTTTGGTCTGG+TGG | + | chr5_1:6024684-6024703 | None:intergenic | 45.0% | |
| !!! | GTCGTCTATTTTGGTGGTCA+TGG | + | chr5_1:6024727-6024746 | None:intergenic | 45.0% |
| TGACCACCAAAATAGACGAC+TGG | - | chr5_1:6024727-6024746 | Msa0713700:CDS | 45.0% | |
| GACCACCAAAATAGACGACT+GGG | - | chr5_1:6024728-6024747 | Msa0713700:CDS | 45.0% | |
| !! | ATCCCAGTCGTCTATTTTGG+TGG | + | chr5_1:6024733-6024752 | None:intergenic | 45.0% |
| TTTGCTCCTGCAGAGAAAGA+CGG | + | chr5_1:6024786-6024805 | None:intergenic | 45.0% | |
| !! | GAAAGAGTGTTGATGGTCAC+TGG | - | chr5_1:6024807-6024826 | Msa0713700:CDS | 45.0% |
| ATTGGATTCTTGCACGGAGA+AGG | + | chr5_1:6024840-6024859 | None:intergenic | 45.0% | |
| TCTCCGTGCAAGAATCCAAT+AGG | - | chr5_1:6024840-6024859 | Msa0713700:CDS | 45.0% | |
| AGATGCATTGTTCACCGACA+TGG | - | chr5_1:6025046-6025065 | Msa0713700:CDS | 45.0% | |
| GCTTCCTCTCAAACGTTACA+AGG | - | chr5_1:6025076-6025095 | Msa0713700:CDS | 45.0% | |
| CGTTTCTCATGGATCAAGTG+AGG | + | chr5_1:6025128-6025147 | None:intergenic | 45.0% | |
| !! | ACGCTGGTGTGTTTTTGATC+AGG | - | chr5_1:6025165-6025184 | Msa0713700:CDS | 45.0% |
| AAGAATGGGGTAAGACTCTC+CGG | - | chr5_1:6025255-6025274 | Msa0713700:CDS | 45.0% | |
| TTTCTCGATCGCGATCAGAT+AGG | + | chr5_1:6025333-6025352 | None:intergenic | 45.0% | |
| !! | GGGTATTGGGAAGAGATAGT+AGG | - | chr5_1:6025401-6025420 | Msa0713700:CDS | 45.0% |
| GCATGACGCCTTCTTAACTT+AGG | + | chr5_1:6025476-6025495 | None:intergenic | 45.0% | |
| ACAGGTTGTCAACCTTGTAG+TGG | - | chr5_1:6025596-6025615 | Msa0713700:CDS | 45.0% | |
| CAGGTTGTCAACCTTGTAGT+GGG | - | chr5_1:6025597-6025616 | Msa0713700:CDS | 45.0% | |
| TGTACACTGCTGATGCTTGT+TGG | - | chr5_1:6025633-6025652 | Msa0713700:CDS | 45.0% | |
| ! | ACTGCTGATGCTTGTTGGAA+TGG | - | chr5_1:6025638-6025657 | Msa0713700:CDS | 45.0% |
| ! | CTGCTGATGCTTGTTGGAAT+GGG | - | chr5_1:6025639-6025658 | Msa0713700:CDS | 45.0% |
| !! | GGGAATGGGTTTTGCCATGA+TGG | + | chr5_1:6024478-6024497 | None:intergenic | 50.0% |
| TCTGATGGCTTCCTCTTCCT+TGG | - | chr5_1:6024525-6024544 | Msa0713700:CDS | 50.0% | |
| GAGCTGAAAATGCTCCTCCA+AGG | + | chr5_1:6024545-6024564 | None:intergenic | 50.0% | |
| ! | GTTTGGGATGGGGTTTGTGA+AGG | + | chr5_1:6024592-6024611 | None:intergenic | 50.0% |
| ! | TGAGGTTGTCGTTTGGGATG+GGG | + | chr5_1:6024602-6024621 | None:intergenic | 50.0% |
| ! | GTGAGGTTGTCGTTTGGGAT+GGG | + | chr5_1:6024603-6024622 | None:intergenic | 50.0% |
| ! | TGGTGGATCAAAGCGCAGAT+CGG | + | chr5_1:6024667-6024686 | None:intergenic | 50.0% |
| CATCATCCGTCTTTCTCTGC+AGG | - | chr5_1:6024777-6024796 | Msa0713700:CDS | 50.0% | |
| GTCTTTCTCTGCAGGAGCAA+AGG | - | chr5_1:6024785-6024804 | Msa0713700:CDS | 50.0% | |
| ATCCAGAAGCAGAGTGGATC+TGG | - | chr5_1:6025012-6025031 | Msa0713700:CDS | 50.0% | |
| AGAAGCAGAGTGGATCTGGT+GGG | - | chr5_1:6025016-6025035 | Msa0713700:CDS | 50.0% | |
| TGATCCATGAGAAACGGAGC+TGG | - | chr5_1:6025132-6025151 | Msa0713700:CDS | 50.0% | |
| ATGAGAAACGGAGCTGGACT+GGG | - | chr5_1:6025138-6025157 | Msa0713700:CDS | 50.0% | |
| !! | GGGAATGGGTTTTGCCATGA+TGG | + | chr5_1:6024478-6024497 | None:intergenic | 50.0% |
| TCTGATGGCTTCCTCTTCCT+TGG | - | chr5_1:6024525-6024544 | Msa0713700:CDS | 50.0% | |
| GAGCTGAAAATGCTCCTCCA+AGG | + | chr5_1:6024545-6024564 | None:intergenic | 50.0% | |
| ! | GTTTGGGATGGGGTTTGTGA+AGG | + | chr5_1:6024592-6024611 | None:intergenic | 50.0% |
| ! | TGAGGTTGTCGTTTGGGATG+GGG | + | chr5_1:6024602-6024621 | None:intergenic | 50.0% |
| ! | GTGAGGTTGTCGTTTGGGAT+GGG | + | chr5_1:6024603-6024622 | None:intergenic | 50.0% |
| ! | TGGTGGATCAAAGCGCAGAT+CGG | + | chr5_1:6024667-6024686 | None:intergenic | 50.0% |
| CATCATCCGTCTTTCTCTGC+AGG | - | chr5_1:6024777-6024796 | Msa0713700:CDS | 50.0% | |
| GTCTTTCTCTGCAGGAGCAA+AGG | - | chr5_1:6024785-6024804 | Msa0713700:CDS | 50.0% | |
| ATCCAGAAGCAGAGTGGATC+TGG | - | chr5_1:6025012-6025031 | Msa0713700:CDS | 50.0% | |
| AGAAGCAGAGTGGATCTGGT+GGG | - | chr5_1:6025016-6025035 | Msa0713700:CDS | 50.0% | |
| TGATCCATGAGAAACGGAGC+TGG | - | chr5_1:6025132-6025151 | Msa0713700:CDS | 50.0% | |
| ATGAGAAACGGAGCTGGACT+GGG | - | chr5_1:6025138-6025157 | Msa0713700:CDS | 50.0% | |
| GATGGCTTCCTCTTCCTTGG+AGG | - | chr5_1:6024528-6024547 | Msa0713700:CDS | 55.0% | |
| ! | GGTGAGGTTGTCGTTTGGGA+TGG | + | chr5_1:6024604-6024623 | None:intergenic | 55.0% |
| GGTGGATCAAAGCGCAGATC+GGG | + | chr5_1:6024666-6024685 | None:intergenic | 55.0% | |
| ! | CGACTGGGATGAAAAGCGTG+AGG | - | chr5_1:6024743-6024762 | Msa0713700:CDS | 55.0% |
| ! | GGGATGAAAAGCGTGAGGAG+TGG | - | chr5_1:6024748-6024767 | Msa0713700:CDS | 55.0% |
| TGGCACATCCAGAAGCAGAG+TGG | - | chr5_1:6025006-6025025 | Msa0713700:CDS | 55.0% | |
| CACCAGATCCACTCTGCTTC+TGG | + | chr5_1:6025017-6025036 | None:intergenic | 55.0% | |
| CAGAAGCAGAGTGGATCTGG+TGG | - | chr5_1:6025015-6025034 | Msa0713700:CDS | 55.0% | |
| GAGGCCAGCCATGAACAACA+AGG | + | chr5_1:6025109-6025128 | None:intergenic | 55.0% | |
| CAGTCCAGCTCCGTTTCTCA+TGG | + | chr5_1:6025139-6025158 | None:intergenic | 55.0% | |
| CATGAGAAACGGAGCTGGAC+TGG | - | chr5_1:6025137-6025156 | Msa0713700:CDS | 55.0% | |
| ! | AGCTGGACTGGGTTAAACGC+TGG | - | chr5_1:6025149-6025168 | Msa0713700:CDS | 55.0% |
| GATTTCATGGAGGCTTGGGC+TGG | - | chr5_1:6025206-6025225 | Msa0713700:CDS | 55.0% | |
| ! | ATGGAGGCTTGGGCTGGAAT+GGG | - | chr5_1:6025212-6025231 | Msa0713700:CDS | 55.0% |
| CCTGTCTGATCGTCTGACTC+GGG | + | chr5_1:6025305-6025324 | None:intergenic | 55.0% | |
| GCCTGTCTGATCGTCTGACT+CGG | + | chr5_1:6025306-6025325 | None:intergenic | 55.0% | |
| GATGGCTTCCTCTTCCTTGG+AGG | - | chr5_1:6024528-6024547 | Msa0713700:CDS | 55.0% | |
| ! | GGTGAGGTTGTCGTTTGGGA+TGG | + | chr5_1:6024604-6024623 | None:intergenic | 55.0% |
| GGTGGATCAAAGCGCAGATC+GGG | + | chr5_1:6024666-6024685 | None:intergenic | 55.0% | |
| ! | CGACTGGGATGAAAAGCGTG+AGG | - | chr5_1:6024743-6024762 | Msa0713700:CDS | 55.0% |
| ! | GGGATGAAAAGCGTGAGGAG+TGG | - | chr5_1:6024748-6024767 | Msa0713700:CDS | 55.0% |
| TGGCACATCCAGAAGCAGAG+TGG | - | chr5_1:6025006-6025025 | Msa0713700:CDS | 55.0% | |
| CACCAGATCCACTCTGCTTC+TGG | + | chr5_1:6025017-6025036 | None:intergenic | 55.0% | |
| CAGAAGCAGAGTGGATCTGG+TGG | - | chr5_1:6025015-6025034 | Msa0713700:CDS | 55.0% | |
| GAGGCCAGCCATGAACAACA+AGG | + | chr5_1:6025109-6025128 | None:intergenic | 55.0% | |
| CAGTCCAGCTCCGTTTCTCA+TGG | + | chr5_1:6025139-6025158 | None:intergenic | 55.0% | |
| CATGAGAAACGGAGCTGGAC+TGG | - | chr5_1:6025137-6025156 | Msa0713700:CDS | 55.0% | |
| ! | AGCTGGACTGGGTTAAACGC+TGG | - | chr5_1:6025149-6025168 | Msa0713700:CDS | 55.0% |
| GATTTCATGGAGGCTTGGGC+TGG | - | chr5_1:6025206-6025225 | Msa0713700:CDS | 55.0% | |
| ! | ATGGAGGCTTGGGCTGGAAT+GGG | - | chr5_1:6025212-6025231 | Msa0713700:CDS | 55.0% |
| CCTGTCTGATCGTCTGACTC+GGG | + | chr5_1:6025305-6025324 | None:intergenic | 55.0% | |
| GCCTGTCTGATCGTCTGACT+CGG | + | chr5_1:6025306-6025325 | None:intergenic | 55.0% | |
| ! | CATGGAGGCTTGGGCTGGAA+TGG | - | chr5_1:6025211-6025230 | Msa0713700:CDS | 60.0% |
| CCCGAGTCAGACGATCAGAC+AGG | - | chr5_1:6025302-6025321 | Msa0713700:CDS | 60.0% | |
| ! | CATGGAGGCTTGGGCTGGAA+TGG | - | chr5_1:6025211-6025230 | Msa0713700:CDS | 60.0% |
| CCCGAGTCAGACGATCAGAC+AGG | - | chr5_1:6025302-6025321 | Msa0713700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6024438 | 6025778 | 6024438 | ID=Msa0713700;Name=Msa0713700 |
| chr5_1 | mRNA | 6024438 | 6025778 | 6024438 | ID=Msa0713700-mRNA-1;Parent=Msa0713700;Name=Msa0713700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|446 |
| chr5_1 | exon | 6024438 | 6025778 | 6024438 | ID=Msa0713700-mRNA-1:exon:2611;Parent=Msa0713700-mRNA-1 |
| chr5_1 | CDS | 6024438 | 6025778 | 6024438 | ID=Msa0713700-mRNA-1:cds;Parent=Msa0713700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
