AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384360 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa1384360 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa1384360 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa1384360 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa1384360 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa1384360 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa1384360 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa1384360 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa1384360 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa1384360 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa1384360 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa1384360 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa1384360 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa1384360 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa1384360 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa1384360 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa1384360 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa1384360 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa1384360 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa1384360 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa1384360 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa1384360 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa1384360 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa1384360 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa1384360 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa1384360 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa1384360 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa1384360 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa1384360 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa1384360 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa1384360 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa1384360 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa1384360 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa1384360 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa1384360 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa1384360 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa1384360 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa1384360 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384360 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa1384360 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1384360 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1384360 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1384360 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa1384360 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa1384360 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa1384360 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa1384360 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa1384360 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa1384360 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa1384360 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa1384360 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa1384360 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa1384360 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa1384360 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa1384360 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa1384360 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa1384360 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa1384360 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa1384360 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa1384360 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa1384360 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa1384360 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa1384360 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa1384360 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa1384360 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa1384360 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa1384360 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa1384360 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa1384360 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa1384360 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa1384360 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa1384360 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa1384360 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa1384360 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa1384360 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa1384360 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa1384360 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1384360 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1384360 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1384360 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa1384360 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa1384360 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa1384360 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa1384360 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa1384360 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa1384360 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa1384360 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa1384360 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa1384360 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa1384360 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 tig0020655:+90269 Msa1384360:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 tig0020655:+89794 Msa1384360:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 tig0020655:-90609 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 tig0020655:-89354 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 tig0020655:-89794 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 tig0020655:+90172 Msa1384360:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 tig0020655:-90389 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 tig0020655:-90170 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 tig0020655:-90991 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 tig0020655:+89655 Msa1384360:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 tig0020655:-89604 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 tig0020655:-89795 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 tig0020655:-90090 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 tig0020655:+90171 Msa1384360:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 tig0020655:+89780 Msa1384360:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 tig0020655:+90929 Msa1384360:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 tig0020655:-90471 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 tig0020655:+89795 Msa1384360:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 tig0020655:-90143 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 tig0020655:-89459 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 tig0020655:-90735 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 tig0020655:-90678 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 tig0020655:+89928 Msa1384360:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 tig0020655:+90268 Msa1384360:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 tig0020655:+90011 Msa1384360:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 tig0020655:+88092 Msa1384360:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 tig0020655:-87910 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 tig0020655:+90026 Msa1384360:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 tig0020655:+89948 Msa1384360:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 tig0020655:-90388 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 tig0020655:-90233 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 tig0020655:-90413 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 tig0020655:-88150 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 tig0020655:-89481 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 tig0020655:+90035 Msa1384360:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 tig0020655:+89801 Msa1384360:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 tig0020655:+89900 Msa1384360:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 tig0020655:+90839 Msa1384360:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 tig0020655:-88182 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 tig0020655:+90805 Msa1384360:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 tig0020655:+90431 Msa1384360:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 tig0020655:-90280 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 tig0020655:-90152 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 tig0020655:+90700 Msa1384360:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 tig0020655:-90513 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 tig0020655:+90432 Msa1384360:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 tig0020655:+90464 Msa1384360:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 tig0020655:-90132 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 tig0020655:-88146 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 tig0020655:+90482 Msa1384360:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 tig0020655:-89468 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 tig0020655:-89576 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 tig0020655:-88168 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 tig0020655:-90098 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 tig0020655:+90737 Msa1384360:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 tig0020655:-89771 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 tig0020655:+90840 Msa1384360:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 tig0020655:-89705 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 tig0020655:-90754 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 tig0020655:-90564 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 tig0020655:+89954 Msa1384360:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 tig0020655:-90412 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 tig0020655:+89993 Msa1384360:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 tig0020655:+90012 Msa1384360:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 tig0020655:-90182 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 tig0020655:-90810 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 tig0020655:+90502 Msa1384360:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 tig0020655:-90594 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 tig0020655:-90281 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 tig0020655:+89663 Msa1384360:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 tig0020655:-90021 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 tig0020655:-89581 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 tig0020655:-90569 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 tig0020655:-88068 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 tig0020655:+90282 Msa1384360:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 tig0020655:+89929 Msa1384360:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 tig0020655:-90598 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 tig0020655:-89394 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 tig0020655:-90140 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 tig0020655:-90209 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 tig0020655:-90814 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 tig0020655:-88095 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 tig0020655:+89690 Msa1384360:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 tig0020655:-89456 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 tig0020655:-90128 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 tig0020655:-88167 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 tig0020655:+90470 Msa1384360:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 tig0020655:-88094 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 tig0020655:-90061 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 tig0020655:-90104 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 tig0020655:-90125 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 tig0020655:-90062 None:intergenic
TGAGTGAAAATATTATGAGA+TGG 0.574965 tig0020655:-88010 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 tig0020655:+89696 Msa1384360:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 tig0020655:-90065 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 tig0020655:+90287 Msa1384360:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 tig0020655:+90192 Msa1384360:CDS
CATGGTATATTCCATGGAGG+TGG 0.595774 tig0020655:-90203 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 tig0020655:-90742 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 tig0020655:-90122 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 tig0020655:-90016 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 tig0020655:+89756 Msa1384360:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 tig0020655:+90270 Msa1384360:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 tig0020655:+90016 Msa1384360:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 tig0020655:+90173 Msa1384360:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 tig0020655:+89666 Msa1384360:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 tig0020655:+90496 Msa1384360:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 tig0020655:+88096 Msa1384360:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 tig0020655:+90215 Msa1384360:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 tig0020655:-89868 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 tig0020655:-88145 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 tig0020655:+89755 Msa1384360:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 tig0020655:-88134 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 tig0020655:-90221 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 tig0020655:-88192 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 tig0020655:+90283 Msa1384360:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 tig0020655:+90408 Msa1384360:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 tig0020655:-89582 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 tig0020655:+89578 Msa1384360:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 tig0020655:+90564 Msa1384360:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 tig0020655:-88125 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 tig0020655:-89406 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 tig0020655:-90551 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 tig0020655:-90788 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 tig0020655:-89793 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 tig0020655:+90002 Msa1384360:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 tig0020655:+89369 Msa1384360:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 tig0020655:+90467 Msa1384360:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 tig0020655:+88196 Msa1384360:CDS
GCCATGGTGTTACAAAGCGG+AGG 0.666467 tig0020655:-89852 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 tig0020655:-88179 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 tig0020655:+89851 Msa1384360:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 tig0020655:+90420 Msa1384360:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 tig0020655:+90517 Msa1384360:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 tig0020655:-90179 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 tig0020655:-89855 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 tig0020655:-90568 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 tig0020655:+90583 Msa1384360:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 tig0020655:-90206 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 tig0020655:+90553 Msa1384360:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 tig0020655:+89392 Msa1384360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTATAAAAAAAAAAAG+GGG - tig0020655:87932-87951 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG + tig0020655:88843-88862 Msa1384360:intron 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG + tig0020655:88594-88613 Msa1384360:intron 15.0%
!! TATATAAAAATAGCAGAAAA+GGG - tig0020655:89081-89100 None:intergenic 15.0%
!! TTATATAAAAATAGCAGAAA+AGG - tig0020655:89082-89101 None:intergenic 15.0%
!!! TTAATCATATTCATTGTTTT+AGG + tig0020655:89329-89348 Msa1384360:intron 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG - tig0020655:88309-88328 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG - tig0020655:88310-88329 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG + tig0020655:88316-88335 Msa1384360:intron 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG + tig0020655:88452-88471 Msa1384360:intron 20.0%
!! TAAAACTAATCTATGGTATT+TGG - tig0020655:88892-88911 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG + tig0020655:88892-88911 Msa1384360:intron 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG + tig0020655:89245-89264 Msa1384360:intron 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG - tig0020655:89607-89626 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG + tig0020655:90700-90719 Msa1384360:three_prime_UTR 20.0%
!!! AGATTTGATAATATGTTGTT+GGG + tig0020655:90840-90859 Msa1384360:three_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG - tig0020655:88013-88032 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG + tig0020655:88315-88334 Msa1384360:intron 25.0%
!! TTTTGATGTCAATTGAATTG+AGG + tig0020655:88356-88375 Msa1384360:intron 25.0%
! AAATTGGATCGAATTTATTC+TGG + tig0020655:88505-88524 Msa1384360:intron 25.0%
! TAACCAAAAAACTTCAATCA+AGG - tig0020655:88693-88712 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG - tig0020655:88725-88744 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG + tig0020655:88908-88927 Msa1384360:intron 25.0%
!!! CTGCATATAATTTTAGTATG+AGG - tig0020655:89117-89136 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG - tig0020655:89484-89503 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG - tig0020655:89541-89560 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG - tig0020655:89646-89665 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG - tig0020655:89647-89666 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG - tig0020655:89725-89744 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG + tig0020655:89993-90012 Msa1384360:CDS 25.0%
! TTTCAATGCAATTCACAATT+AGG - tig0020655:90612-90631 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG + tig0020655:90839-90858 Msa1384360:three_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG + tig0020655:90929-90948 Msa1384360:three_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG - tig0020655:90958-90977 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG - tig0020655:87913-87932 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG - tig0020655:88228-88247 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG - tig0020655:88575-88594 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG + tig0020655:88687-88706 Msa1384360:intron 30.0%
! CGACTTGAACTAAACTATTT+TGG + tig0020655:88723-88742 Msa1384360:intron 30.0%
!!! TGTTATTTTGACACAGAACA+AGG - tig0020655:88776-88795 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG - tig0020655:88823-88842 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG + tig0020655:88855-88874 Msa1384360:intron 30.0%
CAGTCCATAAAACTAATCTA+TGG - tig0020655:88899-88918 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG - tig0020655:88984-89003 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG + tig0020655:89004-89023 Msa1384360:intron 30.0%
GCATACGTGTATAAAAACAT+TGG - tig0020655:89176-89195 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG - tig0020655:89176-89195 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG + tig0020655:89204-89223 Msa1384360:intron 30.0%
AACTTACTGTGTACACAAAA+GGG - tig0020655:89296-89315 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG - tig0020655:89297-89316 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG - tig0020655:89357-89376 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG - tig0020655:89645-89664 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG + tig0020655:89655-89674 Msa1384360:CDS 30.0%
CAAACTATGTAATCCATTAG+GGG - tig0020655:89796-89815 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG - tig0020655:89797-89816 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG + tig0020655:89795-89814 Msa1384360:CDS 30.0%
ACTCAAAATTGTGTGTCAAA+TGG + tig0020655:89900-89919 Msa1384360:CDS 30.0%
! TAGAATGCTAATGGATAGTT+TGG - tig0020655:90146-90165 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG - tig0020655:90338-90357 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG - tig0020655:90391-90410 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG - tig0020655:90392-90411 None:intergenic 30.0%
GGAGAGAATCTTCAAAAAAA+AGG - tig0020655:90973-90992 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG - tig0020655:88042-88061 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG + tig0020655:88064-88083 Msa1384360:exon 35.0%
TTTACCTCTGACATTTCTGT+AGG - tig0020655:88071-88090 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG - tig0020655:88305-88324 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG + tig0020655:88377-88396 Msa1384360:intron 35.0%
TGTGGCTCAAATTCATTATG+TGG + tig0020655:88470-88489 Msa1384360:intron 35.0%
TTCGATCCAATTTCACTGAT+GGG - tig0020655:88498-88517 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG - tig0020655:88499-88518 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG + tig0020655:88565-88584 Msa1384360:intron 35.0%
ACAGAACAAGGACATGAATA+TGG - tig0020655:88764-88783 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG - tig0020655:88934-88953 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG + tig0020655:89340-89359 Msa1384360:intron 35.0%
ACAATGAGAAATGTTCCTGT+TGG + tig0020655:89690-89709 Msa1384360:CDS 35.0%
! TCGACATTTGATAATTCCAG+AGG + tig0020655:89755-89774 Msa1384360:CDS 35.0%
! CGACATTTGATAATTCCAGA+GGG + tig0020655:89756-89775 Msa1384360:CDS 35.0%
GCTAAACTTAATTCCCCTAA+TGG + tig0020655:89780-89799 Msa1384360:CDS 35.0%
!! CCCTAATGGATTACATAGTT+TGG + tig0020655:89794-89813 Msa1384360:CDS 35.0%
CCCAAACTATGTAATCCATT+AGG - tig0020655:89798-89817 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG + tig0020655:89801-89820 Msa1384360:CDS 35.0%
ATCATGCAAGTTCGTATAGT+AGG + tig0020655:89928-89947 Msa1384360:CDS 35.0%
TCATGCAAGTTCGTATAGTA+GGG + tig0020655:89929-89948 Msa1384360:CDS 35.0%
AGGGAAAATGATCACTCAAT+TGG + tig0020655:89948-89967 Msa1384360:CDS 35.0%
AATGATCACTCAATTGGAGT+TGG + tig0020655:89954-89973 Msa1384360:CDS 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG + tig0020655:90026-90045 Msa1384360:CDS 35.0%
TTGGTAGATAAAGGAGTTGA+AGG + tig0020655:90035-90054 Msa1384360:CDS 35.0%
TTCCATGGATAAGGCAAAAA+GGG - tig0020655:90092-90111 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG - tig0020655:90093-90112 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG - tig0020655:90101-90120 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG - tig0020655:90143-90162 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG - tig0020655:90155-90174 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG - tig0020655:90324-90343 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG - tig0020655:90350-90369 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG - tig0020655:90601-90620 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG - tig0020655:90681-90700 None:intergenic 35.0%
! TTCCAAAGAGCTTTATCGCA+GGG - tig0020655:88097-88116 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG - tig0020655:88170-88189 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG - tig0020655:88185-88204 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG - tig0020655:88195-88214 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG + tig0020655:88196-88215 Msa1384360:CDS 40.0%
TCCTACAATACTTATGCCTC+TGG + tig0020655:88944-88963 Msa1384360:intron 40.0%
! ACCAGAGGCATAAGTATTGT+AGG - tig0020655:88948-88967 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG - tig0020655:88980-88999 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG - tig0020655:89018-89037 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG + tig0020655:89369-89388 Msa1384360:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG - tig0020655:89564-89583 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG - tig0020655:89565-89584 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG - tig0020655:89774-89793 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG - tig0020655:89871-89890 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG - tig0020655:90064-90083 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG - tig0020655:90068-90087 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG - tig0020655:90131-90150 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG - tig0020655:90135-90154 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG + tig0020655:90172-90191 Msa1384360:CDS 40.0%
ACACATGGTATATTCCATGG+AGG - tig0020655:90209-90228 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG - tig0020655:90212-90231 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG + tig0020655:90215-90234 Msa1384360:CDS 40.0%
!! TGATTAACAGAAGCACTTCC+TGG - tig0020655:90236-90255 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG + tig0020655:90431-90450 Msa1384360:CDS 40.0%
GTTCATTGTGGTCAAAGCTT+GGG + tig0020655:90432-90451 Msa1384360:CDS 40.0%
GACAAAGCCAATTCTCTCAA+TGG + tig0020655:90464-90483 Msa1384360:CDS 40.0%
AAAGCCAATTCTCTCAATGG+AGG + tig0020655:90467-90486 Msa1384360:CDS 40.0%
! GTTCAATGGATTTCAGTCCA+AGG + tig0020655:90496-90515 Msa1384360:CDS 40.0%
TGGATTTCAGTCCAAGGTAA+AGG + tig0020655:90502-90521 Msa1384360:CDS 40.0%
GTGATTCATGTCCTTTACCT+TGG - tig0020655:90516-90535 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG + tig0020655:90517-90536 Msa1384360:CDS 40.0%
CAATTAGGTTTCCTCATGGA+AGG - tig0020655:90597-90616 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG - tig0020655:90757-90776 None:intergenic 40.0%
AAGAGAGAGAGAGAGAAGGA+GGG - tig0020655:87884-87903 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAAGG+AGG - tig0020655:87885-87904 None:intergenic 45.0%
CAGAAAGAGAGAGAGAGAGA+AGG - tig0020655:87888-87907 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG - tig0020655:88098-88117 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG + tig0020655:88096-88115 Msa1384360:CDS 45.0%
GAGATGAAGAGTCATTGGCA+GGG - tig0020655:88148-88167 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG - tig0020655:88153-88172 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG - tig0020655:88171-88190 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG - tig0020655:88182-88201 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG + tig0020655:88489-88508 Msa1384360:intron 45.0%
GAGAGCTCTTAAATCCTCAG+TGG - tig0020655:89409-89428 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG - tig0020655:89462-89481 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG - tig0020655:89471-89490 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG - tig0020655:89641-89660 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG + tig0020655:89663-89682 Msa1384360:CDS 45.0%
AGAAATGTTCCTGTTGGAGC+TGG + tig0020655:89696-89715 Msa1384360:CDS 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG - tig0020655:89858-89877 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG + tig0020655:90002-90021 Msa1384360:CDS 45.0%
ATCTACCAACCCATTTGTGC+CGG - tig0020655:90024-90043 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG - tig0020655:90065-90084 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG - tig0020655:90086-90105 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG + tig0020655:90087-90106 Msa1384360:CDS 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG - tig0020655:90128-90147 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG - tig0020655:90173-90192 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG + tig0020655:90171-90190 Msa1384360:CDS 45.0%
GTAACTCCACCTGCATATTG+GGG + tig0020655:90173-90192 Msa1384360:CDS 45.0%
ATACAACCCCAATATGCAGG+TGG - tig0020655:90182-90201 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG - tig0020655:90206-90225 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG - tig0020655:90283-90302 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG - tig0020655:90284-90303 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG + tig0020655:90283-90302 Msa1384360:CDS 45.0%
AACTCCTTGCAGCTTCACTT+GGG - tig0020655:90415-90434 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG + tig0020655:90420-90439 Msa1384360:CDS 45.0%
! AATGGAGGAGGCATGTTCAA+TGG + tig0020655:90482-90501 Msa1384360:CDS 45.0%
TAGGACTCTTGCATGGAGTT+TGG - tig0020655:90738-90757 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG + tig0020655:90737-90756 Msa1384360:three_prime_UTR 45.0%
AAACACCTGTTCAGTTAGGC+AGG - tig0020655:90813-90832 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG - tig0020655:90817-90836 None:intergenic 45.0%
!! AATTTGTATAAAAAAAAAAA+GGG - tig0020655:87933-87952 None:intergenic 5.0%
!!! TAATTTGTATAAAAAAAAAA+AGG - tig0020655:87934-87953 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG + tig0020655:88545-88564 Msa1384360:intron 5.0%
GACCCTGCGATAAAGCTCTT+TGG + tig0020655:88092-88111 Msa1384360:CDS 50.0%
GGGATGATCAGTGGAAGAAG+CGG - tig0020655:88128-88147 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG - tig0020655:88137-88156 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG - tig0020655:88149-88168 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG + tig0020655:88211-88230 Msa1384360:intron 50.0%
!! GGTTGGTGAATTCACACCAG+AGG - tig0020655:88963-88982 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG - tig0020655:89397-89416 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG - tig0020655:89459-89478 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG - tig0020655:89584-89603 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG - tig0020655:89585-89604 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG + tig0020655:89666-89685 Msa1384360:CDS 50.0%
TCCTCCGCTTTGTAACACCA+TGG + tig0020655:89851-89870 Msa1384360:CDS 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG - tig0020655:90107-90126 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG - tig0020655:90185-90204 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG + tig0020655:90268-90287 Msa1384360:CDS 50.0%
CTCAGTTCTGTCCCGACTTT+GGG + tig0020655:90269-90288 Msa1384360:CDS 50.0%
TCAGTTCTGTCCCGACTTTG+GGG + tig0020655:90270-90289 Msa1384360:CDS 50.0%
! CGACTTTGGGGAAACACTCA+AGG + tig0020655:90282-90301 Msa1384360:CDS 50.0%
TTGGGGAAACACTCAAGGGA+TGG + tig0020655:90287-90306 Msa1384360:CDS 50.0%
ATGACCCAAGTGAAGCTGCA+AGG + tig0020655:90408-90427 Msa1384360:CDS 50.0%
GAACTCCTTGCAGCTTCACT+TGG - tig0020655:90416-90435 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG + tig0020655:90470-90489 Msa1384360:CDS 50.0%
GCCTCCTCCATTGAGAGAAT+TGG - tig0020655:90474-90493 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG - tig0020655:90745-90764 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG - tig0020655:90791-90810 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG + tig0020655:90805-90824 Msa1384360:three_prime_UTR 50.0%
AGCCTCGCAACAAACCACTG+AGG + tig0020655:89392-89411 Msa1384360:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG - tig0020655:89579-89598 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG + tig0020655:89578-89597 Msa1384360:CDS 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG - tig0020655:89855-89874 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG + tig0020655:90011-90030 Msa1384360:CDS 55.0%
AAGGCCACACCGGCACAAAT+GGG + tig0020655:90012-90031 Msa1384360:CDS 55.0%
GGTGGACAAAAGGTAGGAGG+AGG - tig0020655:90125-90144 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG - tig0020655:90224-90243 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG - tig0020655:90554-90573 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG + tig0020655:90553-90572 Msa1384360:CDS 55.0%
! CCAACCCATTTGTGCCGGTG+TGG - tig0020655:90019-90038 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG + tig0020655:90016-90035 Msa1384360:CDS 60.0%
GGGGTTGTATGCCACCTCCA+TGG + tig0020655:90192-90211 Msa1384360:CDS 60.0%
! CCAACCCTGCGGCTTTATCG+CGG + tig0020655:90564-90583 Msa1384360:CDS 60.0%
GAGACCGCGATAAAGCCGCA+GGG - tig0020655:90571-90590 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG + tig0020655:90583-90602 Msa1384360:CDS 60.0%
TTGCGGCGACCAGCTCCAAC+AGG - tig0020655:89708-89727 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG - tig0020655:90567-90586 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG - tig0020655:90572-90591 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020655 gene 87880 91011 87880 ID=Msa1384360;Name=Msa1384360
tig0020655 mRNA 87880 91011 87880 ID=Msa1384360-mRNA-1;Parent=Msa1384360;Name=Msa1384360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|398|467
tig0020655 exon 87880 88217 87880 ID=Msa1384360-mRNA-1:exon:9026;Parent=Msa1384360-mRNA-1
tig0020655 exon 89351 91011 89351 ID=Msa1384360-mRNA-1:exon:9027;Parent=Msa1384360-mRNA-1
tig0020655 five_prime_UTR 87880 88076 87880 ID=Msa1384360-mRNA-1:five_prime_utr;Parent=Msa1384360-mRNA-1
tig0020655 CDS 88077 88217 88077 ID=Msa1384360-mRNA-1:cds;Parent=Msa1384360-mRNA-1
tig0020655 CDS 89351 90613 89351 ID=Msa1384360-mRNA-1:cds;Parent=Msa1384360-mRNA-1
tig0020655 three_prime_UTR 90614 91011 90614 ID=Msa1384360-mRNA-1:three_prime_utr;Parent=Msa1384360-mRNA-1
Gene Sequence

>Msa1384360

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA
Protein sequence

>Msa1384360

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*