AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435980 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa0435980 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa0435980 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa0435980 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa0435980 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa0435980 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa0435980 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa0435980 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa0435980 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa0435980 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa0435980 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa0435980 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa0435980 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa0435980 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa0435980 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa0435980 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa0435980 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa0435980 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa0435980 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa0435980 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa0435980 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa0435980 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa0435980 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa0435980 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa0435980 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa0435980 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa0435980 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa0435980 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa0435980 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa0435980 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa0435980 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa0435980 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa0435980 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa0435980 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa0435980 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa0435980 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa0435980 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa0435980 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435980 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa0435980 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0435980 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0435980 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0435980 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa0435980 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa0435980 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa0435980 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa0435980 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa0435980 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa0435980 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa0435980 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa0435980 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa0435980 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa0435980 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa0435980 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa0435980 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa0435980 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa0435980 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa0435980 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa0435980 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa0435980 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa0435980 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0435980 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0435980 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa0435980 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa0435980 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa0435980 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa0435980 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa0435980 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa0435980 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa0435980 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa0435980 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa0435980 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa0435980 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa0435980 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa0435980 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa0435980 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa0435980 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0435980 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0435980 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0435980 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa0435980 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa0435980 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa0435980 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa0435980 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa0435980 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa0435980 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa0435980 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa0435980 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa0435980 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa0435980 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 3_2:-89316373 Msa0435980:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 3_2:-89316848 Msa0435980:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 3_2:+89316033 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 3_2:+89317288 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 3_2:+89316848 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 3_2:-89316470 Msa0435980:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 3_2:+89316253 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 3_2:+89316472 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 3_2:+89315651 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 3_2:-89316987 Msa0435980:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 3_2:+89317038 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 3_2:+89316847 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 3_2:+89316552 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 3_2:-89316471 Msa0435980:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 3_2:-89316862 Msa0435980:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 3_2:-89315713 Msa0435980:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 3_2:+89316171 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 3_2:-89316847 Msa0435980:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 3_2:+89316499 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 3_2:+89317183 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 3_2:+89315907 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 3_2:+89315964 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 3_2:-89316714 Msa0435980:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 3_2:-89316374 Msa0435980:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 3_2:-89316631 Msa0435980:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 3_2:-89318550 Msa0435980:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 3_2:+89318732 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 3_2:-89316616 Msa0435980:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 3_2:-89316694 Msa0435980:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 3_2:+89316254 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 3_2:+89316409 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 3_2:+89316229 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 3_2:+89318492 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 3_2:+89317161 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 3_2:-89316607 Msa0435980:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 3_2:-89316841 Msa0435980:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 3_2:-89316742 Msa0435980:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 3_2:-89315803 Msa0435980:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 3_2:+89318460 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 3_2:-89315837 Msa0435980:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 3_2:-89316211 Msa0435980:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 3_2:+89316362 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 3_2:+89316490 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 3_2:-89315942 Msa0435980:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 3_2:+89316129 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 3_2:-89316210 Msa0435980:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 3_2:-89316178 Msa0435980:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 3_2:+89316510 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 3_2:+89318496 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 3_2:-89316160 Msa0435980:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 3_2:+89317174 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 3_2:+89317066 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 3_2:+89318474 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 3_2:+89316544 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 3_2:-89315905 Msa0435980:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 3_2:+89316871 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 3_2:-89315802 Msa0435980:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 3_2:+89316937 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 3_2:+89315888 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 3_2:+89316078 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 3_2:-89316688 Msa0435980:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 3_2:+89316230 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 3_2:-89316649 Msa0435980:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 3_2:-89316630 Msa0435980:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 3_2:+89316460 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 3_2:+89315832 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 3_2:-89316140 Msa0435980:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 3_2:+89316048 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 3_2:+89316361 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 3_2:-89316979 Msa0435980:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 3_2:+89316621 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 3_2:+89317061 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 3_2:+89316073 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 3_2:+89318574 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 3_2:-89316360 Msa0435980:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 3_2:-89316713 Msa0435980:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 3_2:+89316044 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 3_2:+89317248 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 3_2:+89316502 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 3_2:+89316433 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 3_2:+89315828 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 3_2:+89318547 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 3_2:-89316952 Msa0435980:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 3_2:+89317186 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 3_2:+89316514 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 3_2:+89318475 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 3_2:-89316172 Msa0435980:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 3_2:+89318548 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 3_2:+89316581 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 3_2:+89316538 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 3_2:+89316517 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 3_2:+89316580 None:intergenic
TGAGTGAAAATATTATGAGA+TGG 0.574965 3_2:+89318632 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 3_2:-89316946 Msa0435980:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 3_2:+89316577 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 3_2:-89316355 Msa0435980:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 3_2:-89316450 Msa0435980:CDS
CATGGTATATTCCATGGAGG+TGG 0.595774 3_2:+89316439 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 3_2:+89315900 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 3_2:+89316520 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 3_2:+89316626 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 3_2:-89316886 Msa0435980:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 3_2:-89316372 Msa0435980:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 3_2:-89316626 Msa0435980:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 3_2:-89316469 Msa0435980:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 3_2:-89316976 Msa0435980:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 3_2:-89316146 Msa0435980:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 3_2:-89318546 Msa0435980:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 3_2:-89316427 Msa0435980:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 3_2:+89316774 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 3_2:+89318497 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 3_2:-89316887 Msa0435980:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 3_2:+89318508 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 3_2:+89316421 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 3_2:+89318450 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 3_2:-89316359 Msa0435980:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 3_2:-89316234 Msa0435980:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 3_2:+89317060 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 3_2:-89317064 Msa0435980:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 3_2:-89316078 Msa0435980:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 3_2:+89318517 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 3_2:+89317236 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 3_2:+89316091 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 3_2:+89315854 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 3_2:+89316849 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 3_2:-89316640 Msa0435980:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 3_2:-89317273 Msa0435980:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 3_2:-89316175 Msa0435980:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 3_2:-89318446 Msa0435980:intron
GCCATGGTGTTACAAAGCGG+AGG 0.666467 3_2:+89316790 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 3_2:+89318463 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 3_2:-89316791 Msa0435980:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 3_2:-89316222 Msa0435980:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 3_2:-89316125 Msa0435980:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 3_2:+89316463 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 3_2:+89316787 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 3_2:+89316074 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 3_2:-89316059 Msa0435980:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 3_2:+89316436 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 3_2:-89316089 Msa0435980:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 3_2:-89317250 Msa0435980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTATAAAAAAAAAAAG+GGG + chr3_2:89315705-89315724 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG - chr3_2:89316616-89316635 Msa0435980:CDS 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG - chr3_2:89316367-89316386 Msa0435980:CDS 15.0%
!! TATATAAAAATAGCAGAAAA+GGG + chr3_2:89316854-89316873 None:intergenic 15.0%
!! TTATATAAAAATAGCAGAAA+AGG + chr3_2:89316855-89316874 None:intergenic 15.0%
!!! TTAATCATATTCATTGTTTT+AGG - chr3_2:89317102-89317121 Msa0435980:CDS 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG + chr3_2:89316082-89316101 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG + chr3_2:89316083-89316102 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG - chr3_2:89316089-89316108 Msa0435980:CDS 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG - chr3_2:89316225-89316244 Msa0435980:CDS 20.0%
!! TAAAACTAATCTATGGTATT+TGG + chr3_2:89316665-89316684 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG - chr3_2:89316665-89316684 Msa0435980:CDS 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG - chr3_2:89317018-89317037 Msa0435980:CDS 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG + chr3_2:89317380-89317399 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG - chr3_2:89318473-89318492 Msa0435980:CDS 20.0%
!!! AGATTTGATAATATGTTGTT+GGG - chr3_2:89318613-89318632 Msa0435980:five_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG + chr3_2:89315786-89315805 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG - chr3_2:89316088-89316107 Msa0435980:CDS 25.0%
!! TTTTGATGTCAATTGAATTG+AGG - chr3_2:89316129-89316148 Msa0435980:CDS 25.0%
! AAATTGGATCGAATTTATTC+TGG - chr3_2:89316278-89316297 Msa0435980:CDS 25.0%
! TAACCAAAAAACTTCAATCA+AGG + chr3_2:89316466-89316485 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG + chr3_2:89316498-89316517 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG - chr3_2:89316681-89316700 Msa0435980:CDS 25.0%
!!! CTGCATATAATTTTAGTATG+AGG + chr3_2:89316890-89316909 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG + chr3_2:89317257-89317276 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG + chr3_2:89317314-89317333 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG + chr3_2:89317419-89317438 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG + chr3_2:89317420-89317439 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG + chr3_2:89317498-89317517 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG - chr3_2:89317766-89317785 Msa0435980:intron 25.0%
! TTTCAATGCAATTCACAATT+AGG + chr3_2:89318385-89318404 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG - chr3_2:89318612-89318631 Msa0435980:five_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG - chr3_2:89318702-89318721 Msa0435980:five_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG + chr3_2:89318731-89318750 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG + chr3_2:89315686-89315705 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG + chr3_2:89316001-89316020 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG + chr3_2:89316348-89316367 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG - chr3_2:89316460-89316479 Msa0435980:CDS 30.0%
! CGACTTGAACTAAACTATTT+TGG - chr3_2:89316496-89316515 Msa0435980:CDS 30.0%
!!! TGTTATTTTGACACAGAACA+AGG + chr3_2:89316549-89316568 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG + chr3_2:89316596-89316615 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG - chr3_2:89316628-89316647 Msa0435980:CDS 30.0%
CAGTCCATAAAACTAATCTA+TGG + chr3_2:89316672-89316691 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG + chr3_2:89316757-89316776 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG - chr3_2:89316777-89316796 Msa0435980:CDS 30.0%
GCATACGTGTATAAAAACAT+TGG + chr3_2:89316949-89316968 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG + chr3_2:89316949-89316968 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG - chr3_2:89316977-89316996 Msa0435980:CDS 30.0%
AACTTACTGTGTACACAAAA+GGG + chr3_2:89317069-89317088 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG + chr3_2:89317070-89317089 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG + chr3_2:89317130-89317149 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG + chr3_2:89317418-89317437 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG - chr3_2:89317428-89317447 Msa0435980:intron 30.0%
CAAACTATGTAATCCATTAG+GGG + chr3_2:89317569-89317588 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG + chr3_2:89317570-89317589 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG - chr3_2:89317568-89317587 Msa0435980:intron 30.0%
ACTCAAAATTGTGTGTCAAA+TGG - chr3_2:89317673-89317692 Msa0435980:intron 30.0%
! TAGAATGCTAATGGATAGTT+TGG + chr3_2:89317919-89317938 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG + chr3_2:89318111-89318130 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG + chr3_2:89318164-89318183 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG + chr3_2:89318165-89318184 None:intergenic 30.0%
GGAGAGAATCTTCAAAAAAA+AGG + chr3_2:89318746-89318765 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG + chr3_2:89315815-89315834 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG - chr3_2:89315837-89315856 Msa0435980:three_prime_UTR 35.0%
TTTACCTCTGACATTTCTGT+AGG + chr3_2:89315844-89315863 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG + chr3_2:89316078-89316097 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG - chr3_2:89316150-89316169 Msa0435980:CDS 35.0%
TGTGGCTCAAATTCATTATG+TGG - chr3_2:89316243-89316262 Msa0435980:CDS 35.0%
TTCGATCCAATTTCACTGAT+GGG + chr3_2:89316271-89316290 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG + chr3_2:89316272-89316291 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG - chr3_2:89316338-89316357 Msa0435980:CDS 35.0%
ACAGAACAAGGACATGAATA+TGG + chr3_2:89316537-89316556 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG + chr3_2:89316707-89316726 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG - chr3_2:89317113-89317132 Msa0435980:CDS 35.0%
ACAATGAGAAATGTTCCTGT+TGG - chr3_2:89317463-89317482 Msa0435980:intron 35.0%
! TCGACATTTGATAATTCCAG+AGG - chr3_2:89317528-89317547 Msa0435980:intron 35.0%
! CGACATTTGATAATTCCAGA+GGG - chr3_2:89317529-89317548 Msa0435980:intron 35.0%
GCTAAACTTAATTCCCCTAA+TGG - chr3_2:89317553-89317572 Msa0435980:intron 35.0%
!! CCCTAATGGATTACATAGTT+TGG - chr3_2:89317567-89317586 Msa0435980:intron 35.0%
CCCAAACTATGTAATCCATT+AGG + chr3_2:89317571-89317590 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG - chr3_2:89317574-89317593 Msa0435980:intron 35.0%
ATCATGCAAGTTCGTATAGT+AGG - chr3_2:89317701-89317720 Msa0435980:intron 35.0%
TCATGCAAGTTCGTATAGTA+GGG - chr3_2:89317702-89317721 Msa0435980:intron 35.0%
AGGGAAAATGATCACTCAAT+TGG - chr3_2:89317721-89317740 Msa0435980:intron 35.0%
AATGATCACTCAATTGGAGT+TGG - chr3_2:89317727-89317746 Msa0435980:intron 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG - chr3_2:89317799-89317818 Msa0435980:intron 35.0%
TTGGTAGATAAAGGAGTTGA+AGG - chr3_2:89317808-89317827 Msa0435980:intron 35.0%
TTCCATGGATAAGGCAAAAA+GGG + chr3_2:89317865-89317884 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG + chr3_2:89317866-89317885 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG + chr3_2:89317874-89317893 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG + chr3_2:89317916-89317935 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG + chr3_2:89317928-89317947 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG + chr3_2:89318097-89318116 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG + chr3_2:89318123-89318142 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG + chr3_2:89318374-89318393 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG + chr3_2:89318454-89318473 None:intergenic 35.0%
! TTCCAAAGAGCTTTATCGCA+GGG + chr3_2:89315870-89315889 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG + chr3_2:89315943-89315962 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG + chr3_2:89315958-89315977 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG + chr3_2:89315968-89315987 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG - chr3_2:89315969-89315988 Msa0435980:three_prime_UTR 40.0%
TCCTACAATACTTATGCCTC+TGG - chr3_2:89316717-89316736 Msa0435980:CDS 40.0%
! ACCAGAGGCATAAGTATTGT+AGG + chr3_2:89316721-89316740 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG + chr3_2:89316753-89316772 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG + chr3_2:89316791-89316810 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG - chr3_2:89317142-89317161 Msa0435980:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG + chr3_2:89317337-89317356 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG + chr3_2:89317338-89317357 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG + chr3_2:89317547-89317566 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG + chr3_2:89317644-89317663 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG + chr3_2:89317837-89317856 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG + chr3_2:89317841-89317860 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG + chr3_2:89317904-89317923 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG + chr3_2:89317908-89317927 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG - chr3_2:89317945-89317964 Msa0435980:intron 40.0%
ACACATGGTATATTCCATGG+AGG + chr3_2:89317982-89318001 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG + chr3_2:89317985-89318004 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG - chr3_2:89317988-89318007 Msa0435980:intron 40.0%
!! TGATTAACAGAAGCACTTCC+TGG + chr3_2:89318009-89318028 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG - chr3_2:89318204-89318223 Msa0435980:intron 40.0%
GTTCATTGTGGTCAAAGCTT+GGG - chr3_2:89318205-89318224 Msa0435980:intron 40.0%
GACAAAGCCAATTCTCTCAA+TGG - chr3_2:89318237-89318256 Msa0435980:intron 40.0%
AAAGCCAATTCTCTCAATGG+AGG - chr3_2:89318240-89318259 Msa0435980:intron 40.0%
! GTTCAATGGATTTCAGTCCA+AGG - chr3_2:89318269-89318288 Msa0435980:intron 40.0%
TGGATTTCAGTCCAAGGTAA+AGG - chr3_2:89318275-89318294 Msa0435980:intron 40.0%
GTGATTCATGTCCTTTACCT+TGG + chr3_2:89318289-89318308 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG - chr3_2:89318290-89318309 Msa0435980:intron 40.0%
CAATTAGGTTTCCTCATGGA+AGG + chr3_2:89318370-89318389 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG + chr3_2:89318530-89318549 None:intergenic 40.0%
AAGAGAGAGAGAGAGAAGGA+GGG + chr3_2:89315657-89315676 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAAGG+AGG + chr3_2:89315658-89315677 None:intergenic 45.0%
CAGAAAGAGAGAGAGAGAGA+AGG + chr3_2:89315661-89315680 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG + chr3_2:89315871-89315890 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG - chr3_2:89315869-89315888 Msa0435980:three_prime_UTR 45.0%
GAGATGAAGAGTCATTGGCA+GGG + chr3_2:89315921-89315940 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG + chr3_2:89315926-89315945 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG + chr3_2:89315944-89315963 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG + chr3_2:89315955-89315974 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG - chr3_2:89316262-89316281 Msa0435980:CDS 45.0%
GAGAGCTCTTAAATCCTCAG+TGG + chr3_2:89317182-89317201 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG + chr3_2:89317235-89317254 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG + chr3_2:89317244-89317263 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG + chr3_2:89317414-89317433 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG - chr3_2:89317436-89317455 Msa0435980:intron 45.0%
AGAAATGTTCCTGTTGGAGC+TGG - chr3_2:89317469-89317488 Msa0435980:intron 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG + chr3_2:89317631-89317650 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG - chr3_2:89317775-89317794 Msa0435980:intron 45.0%
ATCTACCAACCCATTTGTGC+CGG + chr3_2:89317797-89317816 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG + chr3_2:89317838-89317857 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG + chr3_2:89317859-89317878 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG - chr3_2:89317860-89317879 Msa0435980:intron 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG + chr3_2:89317901-89317920 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG + chr3_2:89317946-89317965 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG - chr3_2:89317944-89317963 Msa0435980:intron 45.0%
GTAACTCCACCTGCATATTG+GGG - chr3_2:89317946-89317965 Msa0435980:intron 45.0%
ATACAACCCCAATATGCAGG+TGG + chr3_2:89317955-89317974 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG + chr3_2:89317979-89317998 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG + chr3_2:89318056-89318075 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG + chr3_2:89318057-89318076 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG - chr3_2:89318056-89318075 Msa0435980:intron 45.0%
AACTCCTTGCAGCTTCACTT+GGG + chr3_2:89318188-89318207 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG - chr3_2:89318193-89318212 Msa0435980:intron 45.0%
! AATGGAGGAGGCATGTTCAA+TGG - chr3_2:89318255-89318274 Msa0435980:intron 45.0%
TAGGACTCTTGCATGGAGTT+TGG + chr3_2:89318511-89318530 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG - chr3_2:89318510-89318529 Msa0435980:CDS 45.0%
AAACACCTGTTCAGTTAGGC+AGG + chr3_2:89318586-89318605 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG + chr3_2:89318590-89318609 None:intergenic 45.0%
!! AATTTGTATAAAAAAAAAAA+GGG + chr3_2:89315706-89315725 None:intergenic 5.0%
!!! TAATTTGTATAAAAAAAAAA+AGG + chr3_2:89315707-89315726 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG - chr3_2:89316318-89316337 Msa0435980:CDS 5.0%
GACCCTGCGATAAAGCTCTT+TGG - chr3_2:89315865-89315884 Msa0435980:three_prime_UTR 50.0%
GGGATGATCAGTGGAAGAAG+CGG + chr3_2:89315901-89315920 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG + chr3_2:89315910-89315929 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG + chr3_2:89315922-89315941 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG - chr3_2:89315984-89316003 Msa0435980:three_prime_UTR 50.0%
!! GGTTGGTGAATTCACACCAG+AGG + chr3_2:89316736-89316755 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG + chr3_2:89317170-89317189 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG + chr3_2:89317232-89317251 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG + chr3_2:89317357-89317376 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG + chr3_2:89317358-89317377 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG - chr3_2:89317439-89317458 Msa0435980:intron 50.0%
TCCTCCGCTTTGTAACACCA+TGG - chr3_2:89317624-89317643 Msa0435980:intron 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG + chr3_2:89317880-89317899 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG + chr3_2:89317958-89317977 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG - chr3_2:89318041-89318060 Msa0435980:intron 50.0%
CTCAGTTCTGTCCCGACTTT+GGG - chr3_2:89318042-89318061 Msa0435980:intron 50.0%
TCAGTTCTGTCCCGACTTTG+GGG - chr3_2:89318043-89318062 Msa0435980:intron 50.0%
! CGACTTTGGGGAAACACTCA+AGG - chr3_2:89318055-89318074 Msa0435980:intron 50.0%
TTGGGGAAACACTCAAGGGA+TGG - chr3_2:89318060-89318079 Msa0435980:intron 50.0%
ATGACCCAAGTGAAGCTGCA+AGG - chr3_2:89318181-89318200 Msa0435980:intron 50.0%
GAACTCCTTGCAGCTTCACT+TGG + chr3_2:89318189-89318208 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG - chr3_2:89318243-89318262 Msa0435980:intron 50.0%
GCCTCCTCCATTGAGAGAAT+TGG + chr3_2:89318247-89318266 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG + chr3_2:89318518-89318537 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG + chr3_2:89318564-89318583 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG - chr3_2:89318578-89318597 Msa0435980:exon 50.0%
AGCCTCGCAACAAACCACTG+AGG - chr3_2:89317165-89317184 Msa0435980:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG + chr3_2:89317352-89317371 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG - chr3_2:89317351-89317370 Msa0435980:intron 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG + chr3_2:89317628-89317647 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG - chr3_2:89317784-89317803 Msa0435980:intron 55.0%
AAGGCCACACCGGCACAAAT+GGG - chr3_2:89317785-89317804 Msa0435980:intron 55.0%
GGTGGACAAAAGGTAGGAGG+AGG + chr3_2:89317898-89317917 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG + chr3_2:89317997-89318016 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG + chr3_2:89318327-89318346 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG - chr3_2:89318326-89318345 Msa0435980:intron 55.0%
! CCAACCCATTTGTGCCGGTG+TGG + chr3_2:89317792-89317811 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG - chr3_2:89317789-89317808 Msa0435980:intron 60.0%
GGGGTTGTATGCCACCTCCA+TGG - chr3_2:89317965-89317984 Msa0435980:intron 60.0%
! CCAACCCTGCGGCTTTATCG+CGG - chr3_2:89318337-89318356 Msa0435980:intron 60.0%
GAGACCGCGATAAAGCCGCA+GGG + chr3_2:89318344-89318363 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG - chr3_2:89318356-89318375 Msa0435980:intron 60.0%
TTGCGGCGACCAGCTCCAAC+AGG + chr3_2:89317481-89317500 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG + chr3_2:89318340-89318359 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG + chr3_2:89318345-89318364 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89315653 89318784 89315653 ID=Msa0435980;Name=Msa0435980
chr3_2 mRNA 89315653 89318784 89315653 ID=Msa0435980-mRNA-1;Parent=Msa0435980;Name=Msa0435980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|398|467
chr3_2 exon 89315653 89317313 89315653 ID=Msa0435980-mRNA-1:exon:26507;Parent=Msa0435980-mRNA-1
chr3_2 exon 89318447 89318784 89318447 ID=Msa0435980-mRNA-1:exon:26506;Parent=Msa0435980-mRNA-1
chr3_2 five_prime_UTR 89318588 89318784 89318588 ID=Msa0435980-mRNA-1:five_prime_utr;Parent=Msa0435980-mRNA-1
chr3_2 CDS 89318447 89318587 89318447 ID=Msa0435980-mRNA-1:cds;Parent=Msa0435980-mRNA-1
chr3_2 CDS 89316051 89317313 89316051 ID=Msa0435980-mRNA-1:cds;Parent=Msa0435980-mRNA-1
chr3_2 three_prime_UTR 89315653 89316050 89315653 ID=Msa0435980-mRNA-1:three_prime_utr;Parent=Msa0435980-mRNA-1
Gene Sequence

>Msa0435980

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA
Protein sequence

>Msa0435980

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*