Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0527690 | XP_003607748.1 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 894 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0527690 | sp|Q8LFV3|CDF3_ARATH | 40.408 | 490 | 224 | 17 | 1 | 466 | 2 | 447 | 6.96e-84 | 268 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0527690 | G7JG96 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 894 |
Gene ID | Type | Classification |
---|---|---|
Msa0527690 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0015930 | Msa0527690 | -0.829126 | 6.127353e-55 | -8.615850e-47 |
Msa0156370 | Msa0527690 | -0.831115 | 2.004133e-55 | -8.615850e-47 |
Msa0402210 | Msa0527690 | -0.854342 | 1.312234e-61 | -8.615850e-47 |
Msa0435980 | Msa0527690 | 0.998708 | 1.021572e-273 | -8.615850e-47 |
Msa0469560 | Msa0527690 | 0.813940 | 1.984097e-51 | -8.615850e-47 |
Msa0355140 | Msa0527690 | -0.839467 | 1.557488e-57 | -8.615850e-47 |
Msa0483770 | Msa0527690 | -0.840962 | 6.337561e-58 | -8.615850e-47 |
Msa0513990 | Msa0527690 | -0.806634 | 7.477374e-50 | -8.615850e-47 |
Msa0515270 | Msa0527690 | 0.813297 | 2.749043e-51 | -8.615850e-47 |
Msa0527690 | Msa0550120 | -0.837754 | 4.312354e-57 | -8.615850e-47 |
Msa0527690 | Msa0550150 | -0.838588 | 2.630451e-57 | -8.615850e-47 |
Msa0527690 | Msa0604010 | -0.811389 | 7.175483e-51 | -8.615850e-47 |
Msa0527690 | Msa0605630 | -0.817750 | 2.804126e-52 | -8.615850e-47 |
Msa0527690 | Msa0605650 | -0.811957 | 5.398818e-51 | -8.615850e-47 |
Msa0527690 | Msa0609660 | 0.989098 | 1.100249e-176 | -8.615850e-47 |
Msa0527690 | Msa0614640 | -0.801897 | 7.247282e-49 | -8.615850e-47 |
Msa0527690 | Msa0646580 | -0.811671 | 6.230745e-51 | -8.615850e-47 |
Msa0527690 | Msa0650500 | 0.994646 | 5.487207e-209 | -8.615850e-47 |
Msa0527690 | Msa0666560 | 0.844026 | 9.751387e-59 | -8.615850e-47 |
Msa0527690 | Msa0692240 | 0.996055 | 6.928969e-223 | -8.615850e-47 |
Msa0527690 | Msa0708930 | -0.810812 | 9.569357e-51 | -8.615850e-47 |
Msa0527690 | Msa0717230 | 0.863936 | 1.743758e-64 | -8.615850e-47 |
Msa0527690 | Msa0745470 | -0.818222 | 2.193419e-52 | -8.615850e-47 |
Msa0527690 | Msa0758300 | 0.825014 | 5.906027e-54 | -8.615850e-47 |
Msa0527690 | Msa0764680 | 0.822621 | 2.148240e-53 | -8.615850e-47 |
Msa0527690 | Msa0799680 | 0.868393 | 6.751106e-66 | -8.615850e-47 |
Msa0527690 | Msa0837930 | 0.819932 | 8.958776e-53 | -8.615850e-47 |
Msa0527690 | Msa0844220 | 0.816376 | 5.708890e-52 | -8.615850e-47 |
Msa0527690 | Msa0867730 | -0.833509 | 5.121006e-56 | -8.615850e-47 |
Msa0527690 | Msa1113700 | 0.850879 | 1.276219e-60 | -8.615850e-47 |
Msa0527690 | Msa1130820 | 0.841214 | 5.442567e-58 | -8.615850e-47 |
Msa0527690 | Msa1172610 | 0.997266 | 1.431482e-239 | -8.615850e-47 |
Msa0527690 | Msa1212190 | -0.803384 | 3.577546e-49 | -8.615850e-47 |
Msa0527690 | Msa1212270 | -0.802313 | 5.952408e-49 | -8.615850e-47 |
Msa0527690 | Msa1384360 | 0.997934 | 2.399313e-252 | -8.615850e-47 |
Msa0527690 | Msa1406670 | 0.837079 | 6.421666e-57 | -8.615850e-47 |
Msa0527690 | Msa1448870 | 0.840188 | 1.010956e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0527690 | MtrunA17_Chr4g0042481 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 894 |
Msa0527690 | MtrunA17_Chr6g0453321 | 44.071 | 506 | 229 | 18 | 1 | 465 | 1 | 493 | 7.15e-115 | 347 |
Msa0527690 | MtrunA17_Chr7g0217581 | 43.461 | 497 | 236 | 16 | 1 | 465 | 98 | 581 | 8.66e-106 | 326 |
Msa0527690 | MtrunA17_Chr3g0092111 | 43.838 | 495 | 216 | 20 | 1 | 465 | 1 | 463 | 7.65e-105 | 320 |
Msa0527690 | MtrunA17_Chr5g0417601 | 41.237 | 485 | 151 | 17 | 6 | 465 | 4 | 379 | 8.84e-87 | 270 |
Msa0527690 | MtrunA17_Chr5g0417551 | 38.320 | 488 | 151 | 17 | 6 | 465 | 4 | 369 | 1.99e-73 | 236 |
Msa0527690 | MtrunA17_Chr5g0417561 | 36.605 | 489 | 152 | 18 | 6 | 466 | 4 | 362 | 6.46e-71 | 229 |
Msa0527690 | MtrunA17_Chr8g0355261 | 33.537 | 492 | 231 | 19 | 5 | 465 | 11 | 437 | 3.76e-62 | 208 |
Msa0527690 | MtrunA17_Chr7g0254161 | 32.787 | 488 | 237 | 17 | 1 | 465 | 3 | 422 | 4.12e-59 | 200 |
Msa0527690 | MtrunA17_Chr5g0417571 | 49.528 | 212 | 70 | 8 | 4 | 185 | 2 | 206 | 1.70e-50 | 174 |
Msa0527690 | MtrunA17_Chr6g0460731 | 34.056 | 323 | 142 | 11 | 4 | 306 | 9 | 280 | 1.32e-42 | 154 |
Msa0527690 | MtrunA17_Chr6g0460721 | 46.857 | 175 | 76 | 4 | 85 | 243 | 51 | 224 | 8.10e-42 | 151 |
Msa0527690 | MtrunA17_Chr2g0283811 | 86.667 | 60 | 8 | 0 | 116 | 175 | 41 | 100 | 9.20e-34 | 124 |
Msa0527690 | MtrunA17_Chr3g0127201 | 61.765 | 68 | 26 | 0 | 108 | 175 | 13 | 80 | 8.85e-26 | 106 |
Msa0527690 | MtrunA17_Chr8g0346551 | 65.625 | 64 | 22 | 0 | 117 | 180 | 19 | 82 | 2.23e-25 | 105 |
Msa0527690 | MtrunA17_Chr8g0367161 | 52.381 | 84 | 40 | 0 | 97 | 180 | 7 | 90 | 4.20e-25 | 105 |
Msa0527690 | MtrunA17_Chr8g0374111 | 63.934 | 61 | 22 | 0 | 122 | 182 | 29 | 89 | 1.01e-24 | 102 |
Msa0527690 | MtrunA17_Chr2g0326001 | 64.615 | 65 | 23 | 0 | 111 | 175 | 29 | 93 | 2.09e-24 | 102 |
Msa0527690 | MtrunA17_Chr8g0374251 | 66.102 | 59 | 20 | 0 | 122 | 180 | 68 | 126 | 2.74e-24 | 103 |
Msa0527690 | MtrunA17_Chr4g0010151 | 67.241 | 58 | 19 | 0 | 118 | 175 | 78 | 135 | 3.10e-24 | 103 |
Msa0527690 | MtrunA17_Chr1g0188851 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 7.39e-24 | 101 |
Msa0527690 | MtrunA17_Chr4g0047001 | 74.074 | 54 | 14 | 0 | 124 | 177 | 57 | 110 | 1.19e-23 | 102 |
Msa0527690 | MtrunA17_Chr2g0308011 | 73.469 | 49 | 13 | 0 | 122 | 170 | 37 | 85 | 2.83e-23 | 97.4 |
Msa0527690 | MtrunA17_Chr1g0177251 | 53.333 | 90 | 40 | 2 | 117 | 204 | 6 | 95 | 4.32e-23 | 99.0 |
Msa0527690 | MtrunA17_Chr4g0031411 | 58.571 | 70 | 26 | 1 | 108 | 174 | 58 | 127 | 4.40e-23 | 99.8 |
Msa0527690 | MtrunA17_Chr2g0328021 | 68.519 | 54 | 17 | 0 | 122 | 175 | 62 | 115 | 5.14e-23 | 98.6 |
Msa0527690 | MtrunA17_Chr4g0061761 | 67.925 | 53 | 17 | 0 | 120 | 172 | 38 | 90 | 5.55e-23 | 99.4 |
Msa0527690 | MtrunA17_Chr8g0341671 | 62.903 | 62 | 23 | 0 | 122 | 183 | 20 | 81 | 6.58e-23 | 96.7 |
Msa0527690 | MtrunA17_Chr4g0030051 | 56.000 | 75 | 29 | 1 | 104 | 174 | 19 | 93 | 2.56e-22 | 96.7 |
Msa0527690 | MtrunA17_Chr7g0237921 | 71.154 | 52 | 15 | 0 | 124 | 175 | 78 | 129 | 2.72e-22 | 97.8 |
Msa0527690 | MtrunA17_Chr7g0223311 | 72.549 | 51 | 14 | 0 | 124 | 174 | 79 | 129 | 6.54e-22 | 97.1 |
Msa0527690 | MtrunA17_Chr2g0282051 | 67.857 | 56 | 17 | 1 | 122 | 177 | 46 | 100 | 7.34e-22 | 95.1 |
Msa0527690 | MtrunA17_Chr3g0126201 | 59.155 | 71 | 27 | 2 | 107 | 175 | 34 | 104 | 7.87e-22 | 96.3 |
Msa0527690 | MtrunA17_Chr4g0047761 | 70.370 | 54 | 15 | 1 | 124 | 177 | 74 | 126 | 1.37e-21 | 95.1 |
Msa0527690 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 118 | 172 | 39 | 93 | 1.47e-21 | 95.5 |
Msa0527690 | MtrunA17_Chr2g0282511 | 71.429 | 49 | 14 | 0 | 122 | 170 | 45 | 93 | 1.53e-21 | 95.1 |
Msa0527690 | MtrunA17_Chr3g0117601 | 61.290 | 62 | 23 | 1 | 112 | 172 | 50 | 111 | 2.61e-21 | 94.7 |
Msa0527690 | MtrunA17_Chr2g0282441 | 70.000 | 50 | 15 | 0 | 124 | 173 | 27 | 76 | 2.87e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0527690 | AT3G47500.1 | 40.408 | 490 | 224 | 17 | 1 | 466 | 2 | 447 | 7.07e-85 | 268 |
Msa0527690 | AT5G39660.3 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.69e-80 | 256 |
Msa0527690 | AT5G39660.1 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.69e-80 | 256 |
Msa0527690 | AT5G39660.2 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.69e-80 | 256 |
Msa0527690 | AT5G62430.1 | 41.361 | 382 | 111 | 15 | 89 | 466 | 25 | 297 | 1.45e-64 | 211 |
Msa0527690 | AT1G69570.1 | 32.985 | 479 | 223 | 17 | 1 | 465 | 1 | 395 | 5.80e-48 | 170 |
Msa0527690 | AT1G26790.1 | 32.265 | 468 | 210 | 17 | 1 | 465 | 7 | 370 | 3.71e-47 | 167 |
Msa0527690 | AT1G29160.1 | 88.333 | 60 | 7 | 0 | 116 | 175 | 56 | 115 | 2.44e-35 | 129 |
Msa0527690 | AT2G34140.1 | 52.727 | 110 | 52 | 0 | 66 | 175 | 2 | 111 | 4.80e-34 | 126 |
Msa0527690 | AT5G60200.1 | 37.931 | 174 | 99 | 4 | 118 | 288 | 51 | 218 | 2.66e-27 | 110 |
Msa0527690 | AT4G24060.1 | 61.538 | 65 | 25 | 0 | 111 | 175 | 42 | 106 | 2.66e-24 | 103 |
Msa0527690 | AT1G51700.1 | 53.086 | 81 | 31 | 1 | 100 | 180 | 18 | 91 | 2.71e-24 | 100 |
Msa0527690 | AT3G55370.1 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 3.86e-24 | 103 |
Msa0527690 | AT3G55370.2 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 4.56e-24 | 103 |
Msa0527690 | AT5G60850.1 | 72.222 | 54 | 15 | 0 | 122 | 175 | 51 | 104 | 4.76e-24 | 102 |
Msa0527690 | AT2G28810.2 | 46.078 | 102 | 49 | 2 | 78 | 173 | 27 | 128 | 5.06e-24 | 102 |
Msa0527690 | AT3G55370.3 | 67.241 | 58 | 19 | 0 | 118 | 175 | 117 | 174 | 5.85e-24 | 103 |
Msa0527690 | AT3G50410.1 | 68.421 | 57 | 18 | 0 | 122 | 178 | 30 | 86 | 6.76e-24 | 100 |
Msa0527690 | AT2G28810.1 | 46.078 | 102 | 49 | 2 | 78 | 173 | 44 | 145 | 7.32e-24 | 102 |
Msa0527690 | AT1G21340.1 | 48.936 | 94 | 37 | 3 | 124 | 216 | 40 | 123 | 9.39e-24 | 100 |
Msa0527690 | AT2G37590.1 | 57.576 | 66 | 28 | 0 | 110 | 175 | 77 | 142 | 1.20e-23 | 101 |
Msa0527690 | AT1G64620.1 | 55.128 | 78 | 34 | 1 | 93 | 170 | 21 | 97 | 1.52e-23 | 102 |
Msa0527690 | AT3G61850.2 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.83e-23 | 100 |
Msa0527690 | AT3G61850.3 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.83e-23 | 100 |
Msa0527690 | AT3G61850.1 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 2.22e-23 | 100 |
Msa0527690 | AT3G61850.5 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 3.15e-23 | 100 |
Msa0527690 | AT3G61850.4 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 3.59e-23 | 100 |
Msa0527690 | AT3G21270.1 | 71.698 | 53 | 15 | 0 | 122 | 174 | 29 | 81 | 3.94e-23 | 97.4 |
Msa0527690 | AT2G28510.1 | 67.797 | 59 | 19 | 0 | 124 | 182 | 50 | 108 | 6.96e-23 | 98.6 |
Msa0527690 | AT1G07640.1 | 69.811 | 53 | 16 | 0 | 122 | 174 | 21 | 73 | 7.96e-23 | 98.2 |
Msa0527690 | AT3G45610.1 | 57.143 | 63 | 27 | 0 | 118 | 180 | 36 | 98 | 8.58e-23 | 97.4 |
Msa0527690 | AT1G28310.1 | 70.370 | 54 | 16 | 0 | 122 | 175 | 27 | 80 | 9.50e-23 | 99.0 |
Msa0527690 | AT1G07640.2 | 69.811 | 53 | 16 | 0 | 122 | 174 | 77 | 129 | 1.30e-22 | 99.0 |
Msa0527690 | AT1G28310.2 | 47.475 | 99 | 43 | 2 | 79 | 175 | 13 | 104 | 1.55e-22 | 98.6 |
Msa0527690 | AT1G07640.3 | 69.811 | 53 | 16 | 0 | 122 | 174 | 85 | 137 | 1.65e-22 | 98.6 |
Msa0527690 | AT5G02460.1 | 57.746 | 71 | 27 | 1 | 108 | 175 | 78 | 148 | 1.86e-22 | 99.4 |
Msa0527690 | AT5G66940.1 | 60.000 | 60 | 24 | 0 | 122 | 181 | 32 | 91 | 2.47e-22 | 95.5 |
Msa0527690 | AT5G65590.1 | 54.930 | 71 | 32 | 0 | 105 | 175 | 24 | 94 | 3.36e-22 | 97.4 |
Msa0527690 | AT4G00940.1 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.54e-22 | 96.7 |
Msa0527690 | AT4G00940.3 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.54e-22 | 96.7 |
Msa0527690 | AT4G00940.2 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.54e-22 | 96.7 |
Msa0527690 | AT1G47655.1 | 71.429 | 49 | 14 | 0 | 122 | 170 | 29 | 77 | 7.53e-22 | 94.0 |
Msa0527690 | AT3G52440.2 | 48.936 | 94 | 40 | 3 | 93 | 180 | 11 | 102 | 9.83e-22 | 95.1 |
Msa0527690 | AT4G38000.1 | 62.500 | 56 | 20 | 1 | 121 | 176 | 40 | 94 | 2.77e-21 | 93.2 |
Msa0527690 | AT3G52440.1 | 64.912 | 57 | 20 | 0 | 124 | 180 | 27 | 83 | 2.91e-21 | 93.2 |
Msa0527690 | AT2G46590.1 | 60.656 | 61 | 22 | 1 | 109 | 169 | 57 | 115 | 3.50e-21 | 95.1 |
Msa0527690 | AT2G46590.2 | 60.656 | 61 | 22 | 1 | 109 | 169 | 69 | 127 | 3.76e-21 | 95.1 |
Msa0527690 | AT4G21050.1 | 43.564 | 101 | 55 | 1 | 115 | 213 | 17 | 117 | 6.50e-21 | 91.3 |
Msa0527690 | AT5G62940.1 | 69.388 | 49 | 15 | 0 | 124 | 172 | 75 | 123 | 9.90e-20 | 90.9 |
Msa0527690 | AT4G21040.1 | 47.297 | 74 | 37 | 1 | 102 | 175 | 7 | 78 | 1.15e-17 | 82.4 |
Msa0527690 | AT4G21080.1 | 57.692 | 52 | 22 | 0 | 124 | 175 | 27 | 78 | 1.55e-16 | 79.7 |
Msa0527690 | AT4G21030.1 | 59.091 | 44 | 18 | 0 | 124 | 167 | 23 | 66 | 4.09e-11 | 62.8 |
Find 141 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGTTCTGTCCCGACTTT+GGG | 0.197222 | 4_1:-190617 | Msa0527690:CDS |
CCCTAATGGATTACATAGTT+TGG | 0.197772 | 4_1:-191092 | Msa0527690:CDS |
TTTCAATGCAATTCACAATT+AGG | 0.220175 | 4_1:+190277 | None:intergenic |
GTAATTAGTTCTTTCCTTGA+TGG | 0.235655 | 4_1:+191532 | None:intergenic |
CCAAACTATGTAATCCATTA+GGG | 0.240822 | 4_1:+191092 | None:intergenic |
AGTAACTCCACCTGCATATT+GGG | 0.244547 | 4_1:-190714 | Msa0527690:CDS |
TCATCAAATCTAAGTGTCTT+TGG | 0.276528 | 4_1:+190497 | None:intergenic |
CAATATGCAGGTGGAGTTAC+TGG | 0.285499 | 4_1:+190716 | None:intergenic |
TTTGAGACTAACATTATTGT+AGG | 0.298707 | 4_1:+189895 | None:intergenic |
GTAAGAAATGTCAAAGATAC+TGG | 0.307217 | 4_1:-191231 | Msa0527690:CDS |
ATTGTTGAAGTAACAAAATT+TGG | 0.309323 | 4_1:+191282 | None:intergenic |
CCCAAACTATGTAATCCATT+AGG | 0.311917 | 4_1:+191091 | None:intergenic |
ATTCCATGGATAAGGCAAAA+AGG | 0.312423 | 4_1:+190796 | None:intergenic |
CAGTAACTCCACCTGCATAT+TGG | 0.313645 | 4_1:-190715 | Msa0527690:CDS |
GCTAAACTTAATTCCCCTAA+TGG | 0.325757 | 4_1:-191106 | Msa0527690:CDS |
ACAATAATGTTAGTCTTCAT+TGG | 0.332215 | 4_1:-189957 | Msa0527690:three_prime_UTR |
GCCTCCTCCATTGAGAGAAT+TGG | 0.332869 | 4_1:+190415 | None:intergenic |
CCTAATGGATTACATAGTTT+GGG | 0.335592 | 4_1:-191091 | Msa0527690:CDS |
TAGAATGCTAATGGATAGTT+TGG | 0.337503 | 4_1:+190743 | None:intergenic |
GTTTCAGCTGATGGAGTCTT+AGG | 0.353075 | 4_1:+191427 | None:intergenic |
TAGGACTCTTGCATGGAGTT+TGG | 0.359745 | 4_1:+190151 | None:intergenic |
AAGAACTTGTCAGCAGAATA+AGG | 0.366367 | 4_1:+190208 | None:intergenic |
ATCATGCAAGTTCGTATAGT+AGG | 0.370122 | 4_1:-190958 | Msa0527690:CDS |
TCTCAGTTCTGTCCCGACTT+TGG | 0.371870 | 4_1:-190618 | Msa0527690:CDS |
AAAGGCCACACCGGCACAAA+TGG | 0.375943 | 4_1:-190875 | Msa0527690:CDS |
GACCCTGCGATAAAGCTCTT+TGG | 0.376470 | 4_1:-192794 | Msa0527690:CDS |
GGGGATATTATATAGTTTGA+TGG | 0.384459 | 4_1:+192976 | None:intergenic |
ACAAATGGGTTGGTAGATAA+AGG | 0.391250 | 4_1:-190860 | Msa0527690:CDS |
AGGGAAAATGATCACTCAAT+TGG | 0.410885 | 4_1:-190938 | Msa0527690:CDS |
CATCAAATCTAAGTGTCTTT+GGG | 0.411049 | 4_1:+190498 | None:intergenic |
TGATTAACAGAAGCACTTCC+TGG | 0.414702 | 4_1:+190653 | None:intergenic |
GAACTCCTTGCAGCTTCACT+TGG | 0.415659 | 4_1:+190473 | None:intergenic |
AGAGGGAGATGAAGAGTCAT+TGG | 0.419013 | 4_1:+192736 | None:intergenic |
AGATTTCAATAACGAATTCT+CGG | 0.425048 | 4_1:+191405 | None:intergenic |
TTGGTAGATAAAGGAGTTGA+AGG | 0.425049 | 4_1:-190851 | Msa0527690:CDS |
GGATTACATAGTTTGGGAAA+TGG | 0.427090 | 4_1:-191085 | Msa0527690:CDS |
ACTCAAAATTGTGTGTCAAA+TGG | 0.434475 | 4_1:-190986 | Msa0527690:CDS |
CAGATTTGATAATATGTTGT+TGG | 0.444254 | 4_1:-190047 | Msa0527690:three_prime_UTR |
TGTATTGCAGAGGTGAATTC+TGG | 0.445396 | 4_1:+192704 | None:intergenic |
TTGAGCCTGCCTAACTGAAC+AGG | 0.455235 | 4_1:-190081 | Msa0527690:three_prime_UTR |
AGTTCATTGTGGTCAAAGCT+TGG | 0.456620 | 4_1:-190455 | Msa0527690:CDS |
TTGAGTGTTTCCCCAAAGTC+GGG | 0.458025 | 4_1:+190606 | None:intergenic |
ACTGGAGTATAGAATGCTAA+TGG | 0.468260 | 4_1:+190734 | None:intergenic |
TGATCTTTATTATTCTCAAA+AGG | 0.468272 | 4_1:-190186 | Msa0527690:three_prime_UTR |
GTGATTCATGTCCTTTACCT+TGG | 0.468280 | 4_1:+190373 | None:intergenic |
GTTCATTGTGGTCAAAGCTT+GGG | 0.469560 | 4_1:-190454 | Msa0527690:CDS |
GACAAAGCCAATTCTCTCAA+TGG | 0.470994 | 4_1:-190422 | Msa0527690:CDS |
TGGATAGTTTGGTGGACAAA+AGG | 0.471372 | 4_1:+190754 | None:intergenic |
GGAGATGAAGAGTCATTGGC+AGG | 0.477484 | 4_1:+192740 | None:intergenic |
AATGGAGGAGGCATGTTCAA+TGG | 0.477902 | 4_1:-190404 | Msa0527690:CDS |
GAATTCTCGGTTTCAGCTGA+TGG | 0.478162 | 4_1:+191418 | None:intergenic |
ATGCTATTGCATCGCGGGCA+TGG | 0.486276 | 4_1:+191310 | None:intergenic |
GAATTCTGGTGGAGAAGAAG+AGG | 0.486452 | 4_1:+192718 | None:intergenic |
ATTGCAGAATTCCATGGATA+AGG | 0.486834 | 4_1:+190788 | None:intergenic |
AAACTCCATGCAAGAGTCCT+AGG | 0.487050 | 4_1:-190149 | Msa0527690:three_prime_UTR |
GAATTAAGTTTAGCACCCTC+TGG | 0.491397 | 4_1:+191115 | None:intergenic |
AGATTTGATAATATGTTGTT+GGG | 0.494242 | 4_1:-190046 | Msa0527690:three_prime_UTR |
TTGCGGCGACCAGCTCCAAC+AGG | 0.495368 | 4_1:+191181 | None:intergenic |
AAGTACAACACTGTTGTCCT+AGG | 0.502288 | 4_1:+190132 | None:intergenic |
CCGCGATAAAGCCGCAGGGT+TGG | 0.504467 | 4_1:+190322 | None:intergenic |
AATGATCACTCAATTGGAGT+TGG | 0.507132 | 4_1:-190932 | Msa0527690:CDS |
AACTCCTTGCAGCTTCACTT+GGG | 0.509294 | 4_1:+190474 | None:intergenic |
TCAAATTCATCAGATAGAAA+AGG | 0.510956 | 4_1:-190893 | Msa0527690:CDS |
AAGGCCACACCGGCACAAAT+GGG | 0.516822 | 4_1:-190874 | Msa0527690:CDS |
GGCATACAACCCCAATATGC+AGG | 0.516977 | 4_1:+190704 | None:intergenic |
AAACACCTGTTCAGTTAGGC+AGG | 0.517381 | 4_1:+190076 | None:intergenic |
TGGATTTCAGTCCAAGGTAA+AGG | 0.518064 | 4_1:-190384 | Msa0527690:CDS |
CAATTAGGTTTCCTCATGGA+AGG | 0.522646 | 4_1:+190292 | None:intergenic |
CTTGAGTGTTTCCCCAAAGT+CGG | 0.525777 | 4_1:+190605 | None:intergenic |
TGTCAAAGATACTGGACTGC+AGG | 0.528621 | 4_1:-191223 | Msa0527690:CDS |
ATCTACCAACCCATTTGTGC+CGG | 0.532135 | 4_1:+190865 | None:intergenic |
TGTCCATGCTATTGCATCGC+GGG | 0.535971 | 4_1:+191305 | None:intergenic |
CGAGACCGCGATAAAGCCGC+AGG | 0.536771 | 4_1:+190317 | None:intergenic |
TTTACCTCTGACATTTCTGT+AGG | 0.537948 | 4_1:+192818 | None:intergenic |
CGACTTTGGGGAAACACTCA+AGG | 0.540052 | 4_1:-190604 | Msa0527690:CDS |
TCATGCAAGTTCGTATAGTA+GGG | 0.541345 | 4_1:-190957 | Msa0527690:CDS |
TTCACAATTAGGTTTCCTCA+TGG | 0.553418 | 4_1:+190288 | None:intergenic |
ATCCTCAGTGGTTTGTTGCG+AGG | 0.554021 | 4_1:+191492 | None:intergenic |
AATGCTAATGGATAGTTTGG+TGG | 0.554354 | 4_1:+190746 | None:intergenic |
GAGACACATGGTATATTCCA+TGG | 0.554398 | 4_1:+190677 | None:intergenic |
GCAGAAACACCTGTTCAGTT+AGG | 0.556152 | 4_1:+190072 | None:intergenic |
CTTCCAAAGAGCTTTATCGC+AGG | 0.556819 | 4_1:+192791 | None:intergenic |
ACAATGAGAAATGTTCCTGT+TGG | 0.557862 | 4_1:-191196 | Msa0527690:CDS |
TCAGCTGATGGAGTCTTAGG+AGG | 0.562404 | 4_1:+191430 | None:intergenic |
TAGTTTGGTGGACAAAAGGT+AGG | 0.562573 | 4_1:+190758 | None:intergenic |
AATTCTGGTGGAGAAGAAGA+GGG | 0.562827 | 4_1:+192719 | None:intergenic |
GCCAATTCTCTCAATGGAGG+AGG | 0.563194 | 4_1:-190416 | Msa0527690:CDS |
TTCCAAAGAGCTTTATCGCA+GGG | 0.567023 | 4_1:+192792 | None:intergenic |
GAATATGTTGCAACTGAGGA+GGG | 0.570048 | 4_1:+190825 | None:intergenic |
GGAGGCATTGCAGAATTCCA+TGG | 0.572249 | 4_1:+190782 | None:intergenic |
TTTGGTGGACAAAAGGTAGG+AGG | 0.574664 | 4_1:+190761 | None:intergenic |
GGAATATGTTGCAACTGAGG+AGG | 0.574863 | 4_1:+190824 | None:intergenic |
TGAGTGAAAATATTATGAGA+TGG | 0.574965 | 4_1:+192876 | None:intergenic |
AGAAATGTTCCTGTTGGAGC+TGG | 0.575931 | 4_1:-191190 | Msa0527690:CDS |
CTTGGAATATGTTGCAACTG+AGG | 0.581444 | 4_1:+190821 | None:intergenic |
TTGGGGAAACACTCAAGGGA+TGG | 0.586619 | 4_1:-190599 | Msa0527690:CDS |
GGGGTTGTATGCCACCTCCA+TGG | 0.588317 | 4_1:-190694 | Msa0527690:CDS |
CATGGTATATTCCATGGAGG+TGG | 0.595774 | 4_1:+190683 | None:intergenic |
GTTGTCCTAGGACTCTTGCA+TGG | 0.602070 | 4_1:+190144 | None:intergenic |
GGTGGACAAAAGGTAGGAGG+AGG | 0.603448 | 4_1:+190764 | None:intergenic |
CCAACCCATTTGTGCCGGTG+TGG | 0.605033 | 4_1:+190870 | None:intergenic |
CGACATTTGATAATTCCAGA+GGG | 0.606272 | 4_1:-191130 | Msa0527690:CDS |
TCAGTTCTGTCCCGACTTTG+GGG | 0.606745 | 4_1:-190616 | Msa0527690:CDS |
CCACACCGGCACAAATGGGT+TGG | 0.611096 | 4_1:-190870 | Msa0527690:CDS |
GTAACTCCACCTGCATATTG+GGG | 0.611433 | 4_1:-190713 | Msa0527690:CDS |
CAAAGATACTGGACTGCAGG+AGG | 0.611856 | 4_1:-191220 | Msa0527690:CDS |
GTTCAATGGATTTCAGTCCA+AGG | 0.615097 | 4_1:-190390 | Msa0527690:CDS |
CTGCGATAAAGCTCTTTGGA+AGG | 0.619750 | 4_1:-192790 | Msa0527690:CDS |
AATATACCATGTGTCTCACC+AGG | 0.620306 | 4_1:-190671 | Msa0527690:CDS |
GATGTTCAATACAGAAGCCA+TGG | 0.623380 | 4_1:+191018 | None:intergenic |
GAGATGAAGAGTCATTGGCA+GGG | 0.625244 | 4_1:+192741 | None:intergenic |
TCGACATTTGATAATTCCAG+AGG | 0.625580 | 4_1:-191131 | Msa0527690:CDS |
TCATTGGCAGGGATGATCAG+TGG | 0.630276 | 4_1:+192752 | None:intergenic |
GCACTTCCTGGTGAGACACA+TGG | 0.630353 | 4_1:+190665 | None:intergenic |
AGTTTCATGCTGTATTGCAG+AGG | 0.631365 | 4_1:+192694 | None:intergenic |
GACTTTGGGGAAACACTCAA+GGG | 0.631484 | 4_1:-190603 | Msa0527690:CDS |
ATGACCCAAGTGAAGCTGCA+AGG | 0.632038 | 4_1:-190478 | Msa0527690:CDS |
GTGTCCATGCTATTGCATCG+CGG | 0.634519 | 4_1:+191304 | None:intergenic |
ATGCCCGCGATGCAATAGCA+TGG | 0.635421 | 4_1:-191308 | Msa0527690:CDS |
CCAACCCTGCGGCTTTATCG+CGG | 0.637960 | 4_1:-190322 | Msa0527690:CDS |
GGGATGATCAGTGGAAGAAG+CGG | 0.640321 | 4_1:+192761 | None:intergenic |
GAGAGCTCTTAAATCCTCAG+TGG | 0.645204 | 4_1:+191480 | None:intergenic |
GCAGGGTTGGCATACATCAG+CGG | 0.645757 | 4_1:+190335 | None:intergenic |
GCTCAAGATAGCAGCTACTG+AGG | 0.646149 | 4_1:+190098 | None:intergenic |
CAAACTATGTAATCCATTAG+GGG | 0.651674 | 4_1:+191093 | None:intergenic |
TCAGATAGAAAAGGCCACAC+CGG | 0.654081 | 4_1:-190884 | Msa0527690:CDS |
CTAATTACAGCACAAGACGA+TGG | 0.658149 | 4_1:-191517 | Msa0527690:CDS |
AAAGCCAATTCTCTCAATGG+AGG | 0.662101 | 4_1:-190419 | Msa0527690:CDS |
TGCAATACAGCATGAAACTG+AGG | 0.664237 | 4_1:-192690 | Msa0527690:intron |
GCCATGGTGTTACAAAGCGG+AGG | 0.666467 | 4_1:+191034 | None:intergenic |
ATTGCAGAGGTGAATTCTGG+TGG | 0.675104 | 4_1:+192707 | None:intergenic |
TCCTCCGCTTTGTAACACCA+TGG | 0.687107 | 4_1:-191035 | Msa0527690:CDS |
AAGCTGCAAGGAGTTCATTG+TGG | 0.697169 | 4_1:-190466 | Msa0527690:CDS |
GGTAAAGGACATGAATCACA+CGG | 0.721107 | 4_1:-190369 | Msa0527690:CDS |
ATACAACCCCAATATGCAGG+TGG | 0.724114 | 4_1:+190707 | None:intergenic |
GAAGCCATGGTGTTACAAAG+CGG | 0.731105 | 4_1:+191031 | None:intergenic |
GAGACCGCGATAAAGCCGCA+GGG | 0.731318 | 4_1:+190318 | None:intergenic |
GCGGTCTCGTACCTTCCATG+AGG | 0.732623 | 4_1:-190303 | Msa0527690:CDS |
ACACATGGTATATTCCATGG+AGG | 0.757531 | 4_1:+190680 | None:intergenic |
GCTGATGTATGCCAACCCTG+CGG | 0.770728 | 4_1:-190333 | Msa0527690:CDS |
AGCCTCGCAACAAACCACTG+AGG | 0.809905 | 4_1:-191494 | Msa0527690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTGTATAAAAAAAAAAAG+GGG | + | chr4_1:189949-189968 | None:intergenic | 10.0% |
!! | ATTTATATAAAAATTGTTCA+TGG | - | chr4_1:190860-190879 | Msa0527690:CDS | 10.0% |
!!! | CAATTATCAATTTTTTGTTT+TGG | - | chr4_1:190611-190630 | Msa0527690:CDS | 15.0% |
!! | TATATAAAAATAGCAGAAAA+GGG | + | chr4_1:191098-191117 | None:intergenic | 15.0% |
!! | TTATATAAAAATAGCAGAAA+AGG | + | chr4_1:191099-191118 | None:intergenic | 15.0% |
!!! | TTAATCATATTCATTGTTTT+AGG | - | chr4_1:191346-191365 | Msa0527690:CDS | 15.0% |
!! | ATTAACTGCTTAAGAAAAAT+GGG | + | chr4_1:190326-190345 | None:intergenic | 20.0% |
!! | AATTAACTGCTTAAGAAAAA+TGG | + | chr4_1:190327-190346 | None:intergenic | 20.0% |
!! | TTAAGCAGTTAATTGTTAAT+GGG | - | chr4_1:190333-190352 | Msa0527690:CDS | 20.0% |
!!! | TTGAATCTTTTATTAAGTTG+TGG | - | chr4_1:190469-190488 | Msa0527690:CDS | 20.0% |
!! | TAAAACTAATCTATGGTATT+TGG | + | chr4_1:190909-190928 | None:intergenic | 20.0% |
!!! | AATACCATAGATTAGTTTTA+TGG | - | chr4_1:190909-190928 | Msa0527690:CDS | 20.0% |
!!! | TTTGTTTTTTACTTCTATTG+AGG | - | chr4_1:191262-191281 | Msa0527690:CDS | 20.0% |
!! | ATTGTTGAAGTAACAAAATT+TGG | + | chr4_1:191624-191643 | None:intergenic | 20.0% |
!! | TGATCTTTATTATTCTCAAA+AGG | - | chr4_1:192717-192736 | Msa0527690:CDS | 20.0% |
!!! | AGATTTGATAATATGTTGTT+GGG | - | chr4_1:192857-192876 | Msa0527690:five_prime_UTR | 20.0% |
! | TGAGTGAAAATATTATGAGA+TGG | + | chr4_1:190030-190049 | None:intergenic | 25.0% |
! | CTTAAGCAGTTAATTGTTAA+TGG | - | chr4_1:190332-190351 | Msa0527690:CDS | 25.0% |
!! | TTTTGATGTCAATTGAATTG+AGG | - | chr4_1:190373-190392 | Msa0527690:CDS | 25.0% |
! | AAATTGGATCGAATTTATTC+TGG | - | chr4_1:190522-190541 | Msa0527690:CDS | 25.0% |
! | TAACCAAAAAACTTCAATCA+AGG | + | chr4_1:190710-190729 | None:intergenic | 25.0% |
!! | CAAAATAGTTTAGTTCAAGT+CGG | + | chr4_1:190742-190761 | None:intergenic | 25.0% |
!!! | TTTATGGACTGTTAGTTTTT+AGG | - | chr4_1:190925-190944 | Msa0527690:CDS | 25.0% |
!!! | CTGCATATAATTTTAGTATG+AGG | + | chr4_1:191134-191153 | None:intergenic | 25.0% |
! | AGATTTCAATAACGAATTCT+CGG | + | chr4_1:191501-191520 | None:intergenic | 25.0% |
!!! | TTTCTTCAGAGTTTTTTCTT+CGG | + | chr4_1:191558-191577 | None:intergenic | 25.0% |
! | ACATTTCTTACAAAAATGAC+GGG | + | chr4_1:191663-191682 | None:intergenic | 25.0% |
! | GACATTTCTTACAAAAATGA+CGG | + | chr4_1:191664-191683 | None:intergenic | 25.0% |
!! | TAGATAAGTTTTTGTTCTTG+CGG | + | chr4_1:191742-191761 | None:intergenic | 25.0% |
! | TCAAATTCATCAGATAGAAA+AGG | - | chr4_1:192010-192029 | Msa0527690:intron | 25.0% |
! | TTTCAATGCAATTCACAATT+AGG | + | chr4_1:192629-192648 | None:intergenic | 25.0% |
!! | CAGATTTGATAATATGTTGT+TGG | - | chr4_1:192856-192875 | Msa0527690:five_prime_UTR | 25.0% |
!!! | ACAATAATGTTAGTCTTCAT+TGG | - | chr4_1:192946-192965 | Msa0527690:five_prime_UTR | 25.0% |
! | AAAAAAGGTAACAAAACAAC+AGG | + | chr4_1:192975-192994 | None:intergenic | 25.0% |
GGGGATATTATATAGTTTGA+TGG | + | chr4_1:189930-189949 | None:intergenic | 30.0% | |
TCAATCATATGAAACCTTCA+TGG | + | chr4_1:190245-190264 | None:intergenic | 30.0% | |
GAAAAAACCAAAGCAAAACA+AGG | + | chr4_1:190592-190611 | None:intergenic | 30.0% | |
!!! | TTGCCTTGATTGAAGTTTTT+TGG | - | chr4_1:190704-190723 | Msa0527690:CDS | 30.0% |
! | CGACTTGAACTAAACTATTT+TGG | - | chr4_1:190740-190759 | Msa0527690:CDS | 30.0% |
!!! | TGTTATTTTGACACAGAACA+AGG | + | chr4_1:190793-190812 | None:intergenic | 30.0% |
AATTATGTTGTGATGTCACA+AGG | + | chr4_1:190840-190859 | None:intergenic | 30.0% | |
ATTGTTCATGGACATATTAC+TGG | - | chr4_1:190872-190891 | Msa0527690:CDS | 30.0% | |
CAGTCCATAAAACTAATCTA+TGG | + | chr4_1:190916-190935 | None:intergenic | 30.0% | |
! | AATTTTAAGCGCAAAGTGAA+AGG | + | chr4_1:191001-191020 | None:intergenic | 30.0% |
TCTATGAGAATCCATATATG+AGG | - | chr4_1:191021-191040 | Msa0527690:CDS | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4_1:191193-191212 | None:intergenic | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4_1:191193-191212 | None:intergenic | 30.0% | |
!! | TGTTTTTATACACGTATGCT+CGG | - | chr4_1:191221-191240 | Msa0527690:CDS | 30.0% |
AACTTACTGTGTACACAAAA+GGG | + | chr4_1:191313-191332 | None:intergenic | 30.0% | |
TAACTTACTGTGTACACAAA+AGG | + | chr4_1:191314-191333 | None:intergenic | 30.0% | |
! | GTAATTAGTTCTTTCCTTGA+TGG | + | chr4_1:191374-191393 | None:intergenic | 30.0% |
CATTTCTTACAAAAATGACG+GGG | + | chr4_1:191662-191681 | None:intergenic | 30.0% | |
GTAAGAAATGTCAAAGATAC+TGG | - | chr4_1:191672-191691 | Msa0527690:intron | 30.0% | |
CAAACTATGTAATCCATTAG+GGG | + | chr4_1:191813-191832 | None:intergenic | 30.0% | |
CCAAACTATGTAATCCATTA+GGG | + | chr4_1:191814-191833 | None:intergenic | 30.0% | |
!! | CCTAATGGATTACATAGTTT+GGG | - | chr4_1:191812-191831 | Msa0527690:intron | 30.0% |
ACTCAAAATTGTGTGTCAAA+TGG | - | chr4_1:191917-191936 | Msa0527690:intron | 30.0% | |
! | TAGAATGCTAATGGATAGTT+TGG | + | chr4_1:192163-192182 | None:intergenic | 30.0% |
!! | TCATTTTCAGGCTTTTCTTT+TGG | + | chr4_1:192355-192374 | None:intergenic | 30.0% |
CATCAAATCTAAGTGTCTTT+GGG | + | chr4_1:192408-192427 | None:intergenic | 30.0% | |
TCATCAAATCTAAGTGTCTT+TGG | + | chr4_1:192409-192428 | None:intergenic | 30.0% | |
GGAGAGAATCTTCAAAAAAA+AGG | + | chr4_1:192990-193009 | None:intergenic | 30.0% | |
!!! | TGTGTGTGACTCAGTTTTTT+AGG | + | chr4_1:190059-190078 | None:intergenic | 35.0% |
! | TTTTCCTACAGAAATGTCAG+AGG | - | chr4_1:190081-190100 | Msa0527690:three_prime_UTR | 35.0% |
TTTACCTCTGACATTTCTGT+AGG | + | chr4_1:190088-190107 | None:intergenic | 35.0% | |
ACTGCTTAAGAAAAATGGGT+TGG | + | chr4_1:190322-190341 | None:intergenic | 35.0% | |
GGAATTGCTGAAATTCTCAA+TGG | - | chr4_1:190394-190413 | Msa0527690:CDS | 35.0% | |
TGTGGCTCAAATTCATTATG+TGG | - | chr4_1:190487-190506 | Msa0527690:CDS | 35.0% | |
TTCGATCCAATTTCACTGAT+GGG | + | chr4_1:190515-190534 | None:intergenic | 35.0% | |
ATTCGATCCAATTTCACTGA+TGG | + | chr4_1:190516-190535 | None:intergenic | 35.0% | |
!!! | TGGTTTACCTTGTTTTGCTT+TGG | - | chr4_1:190582-190601 | Msa0527690:CDS | 35.0% |
ACAGAACAAGGACATGAATA+TGG | + | chr4_1:190781-190800 | None:intergenic | 35.0% | |
TATTGTAGGAGACAAGAGTA+AGG | + | chr4_1:190951-190970 | None:intergenic | 35.0% | |
!!! | CATTGTTTTAGGAACCATCA+AGG | - | chr4_1:191357-191376 | Msa0527690:CDS | 35.0% |
ACAATGAGAAATGTTCCTGT+TGG | - | chr4_1:191707-191726 | Msa0527690:intron | 35.0% | |
! | TCGACATTTGATAATTCCAG+AGG | - | chr4_1:191772-191791 | Msa0527690:intron | 35.0% |
! | CGACATTTGATAATTCCAGA+GGG | - | chr4_1:191773-191792 | Msa0527690:intron | 35.0% |
GCTAAACTTAATTCCCCTAA+TGG | - | chr4_1:191797-191816 | Msa0527690:intron | 35.0% | |
!! | CCCTAATGGATTACATAGTT+TGG | - | chr4_1:191811-191830 | Msa0527690:intron | 35.0% |
CCCAAACTATGTAATCCATT+AGG | + | chr4_1:191815-191834 | None:intergenic | 35.0% | |
GGATTACATAGTTTGGGAAA+TGG | - | chr4_1:191818-191837 | Msa0527690:intron | 35.0% | |
ATCATGCAAGTTCGTATAGT+AGG | - | chr4_1:191945-191964 | Msa0527690:intron | 35.0% | |
TCATGCAAGTTCGTATAGTA+GGG | - | chr4_1:191946-191965 | Msa0527690:intron | 35.0% | |
AGGGAAAATGATCACTCAAT+TGG | - | chr4_1:191965-191984 | Msa0527690:intron | 35.0% | |
AATGATCACTCAATTGGAGT+TGG | - | chr4_1:191971-191990 | Msa0527690:intron | 35.0% | |
!! | ACAAATGGGTTGGTAGATAA+AGG | - | chr4_1:192043-192062 | Msa0527690:intron | 35.0% |
TTGGTAGATAAAGGAGTTGA+AGG | - | chr4_1:192052-192071 | Msa0527690:intron | 35.0% | |
TTCCATGGATAAGGCAAAAA+GGG | + | chr4_1:192109-192128 | None:intergenic | 35.0% | |
ATTCCATGGATAAGGCAAAA+AGG | + | chr4_1:192110-192129 | None:intergenic | 35.0% | |
ATTGCAGAATTCCATGGATA+AGG | + | chr4_1:192118-192137 | None:intergenic | 35.0% | |
! | AATGCTAATGGATAGTTTGG+TGG | + | chr4_1:192160-192179 | None:intergenic | 35.0% |
ACTGGAGTATAGAATGCTAA+TGG | + | chr4_1:192172-192191 | None:intergenic | 35.0% | |
! | TTCTTTTGGTGAATTGACTG+AGG | + | chr4_1:192341-192360 | None:intergenic | 35.0% |
!! | GTGCTATTGTGTTCATTTTC+AGG | + | chr4_1:192367-192386 | None:intergenic | 35.0% |
TTCACAATTAGGTTTCCTCA+TGG | + | chr4_1:192618-192637 | None:intergenic | 35.0% | |
AAGAACTTGTCAGCAGAATA+AGG | + | chr4_1:192698-192717 | None:intergenic | 35.0% | |
! | TTCCAAAGAGCTTTATCGCA+GGG | + | chr4_1:190114-190133 | None:intergenic | 40.0% |
AATTCTGGTGGAGAAGAAGA+GGG | + | chr4_1:190187-190206 | None:intergenic | 40.0% | |
TGTATTGCAGAGGTGAATTC+TGG | + | chr4_1:190202-190221 | None:intergenic | 40.0% | |
AGTTTCATGCTGTATTGCAG+AGG | + | chr4_1:190212-190231 | None:intergenic | 40.0% | |
TGCAATACAGCATGAAACTG+AGG | - | chr4_1:190213-190232 | Msa0527690:three_prime_UTR | 40.0% | |
TCCTACAATACTTATGCCTC+TGG | - | chr4_1:190961-190980 | Msa0527690:CDS | 40.0% | |
! | ACCAGAGGCATAAGTATTGT+AGG | + | chr4_1:190965-190984 | None:intergenic | 40.0% |
TTAAGCGCAAAGTGAAAGGT+TGG | + | chr4_1:190997-191016 | None:intergenic | 40.0% | |
TGACTCTGACTCCTCATATA+TGG | + | chr4_1:191035-191054 | None:intergenic | 40.0% | |
CTAATTACAGCACAAGACGA+TGG | - | chr4_1:191386-191405 | Msa0527690:CDS | 40.0% | |
!! | GGGCATGGAATTATTTTGTC+GGG | + | chr4_1:191581-191600 | None:intergenic | 40.0% |
!! | CGGGCATGGAATTATTTTGT+CGG | + | chr4_1:191582-191601 | None:intergenic | 40.0% |
GAATTAAGTTTAGCACCCTC+TGG | + | chr4_1:191791-191810 | None:intergenic | 40.0% | |
GATGTTCAATACAGAAGCCA+TGG | + | chr4_1:191888-191907 | None:intergenic | 40.0% | |
GAATATGTTGCAACTGAGGA+GGG | + | chr4_1:192081-192100 | None:intergenic | 40.0% | |
CTTGGAATATGTTGCAACTG+AGG | + | chr4_1:192085-192104 | None:intergenic | 40.0% | |
! | TAGTTTGGTGGACAAAAGGT+AGG | + | chr4_1:192148-192167 | None:intergenic | 40.0% |
! | TGGATAGTTTGGTGGACAAA+AGG | + | chr4_1:192152-192171 | None:intergenic | 40.0% |
AGTAACTCCACCTGCATATT+GGG | - | chr4_1:192189-192208 | Msa0527690:intron | 40.0% | |
ACACATGGTATATTCCATGG+AGG | + | chr4_1:192226-192245 | None:intergenic | 40.0% | |
GAGACACATGGTATATTCCA+TGG | + | chr4_1:192229-192248 | None:intergenic | 40.0% | |
AATATACCATGTGTCTCACC+AGG | - | chr4_1:192232-192251 | Msa0527690:intron | 40.0% | |
!! | TGATTAACAGAAGCACTTCC+TGG | + | chr4_1:192253-192272 | None:intergenic | 40.0% |
AGTTCATTGTGGTCAAAGCT+TGG | - | chr4_1:192448-192467 | Msa0527690:intron | 40.0% | |
GTTCATTGTGGTCAAAGCTT+GGG | - | chr4_1:192449-192468 | Msa0527690:intron | 40.0% | |
GACAAAGCCAATTCTCTCAA+TGG | - | chr4_1:192481-192500 | Msa0527690:intron | 40.0% | |
AAAGCCAATTCTCTCAATGG+AGG | - | chr4_1:192484-192503 | Msa0527690:intron | 40.0% | |
! | GTTCAATGGATTTCAGTCCA+AGG | - | chr4_1:192513-192532 | Msa0527690:intron | 40.0% |
TGGATTTCAGTCCAAGGTAA+AGG | - | chr4_1:192519-192538 | Msa0527690:intron | 40.0% | |
GTGATTCATGTCCTTTACCT+TGG | + | chr4_1:192533-192552 | None:intergenic | 40.0% | |
GGTAAAGGACATGAATCACA+CGG | - | chr4_1:192534-192553 | Msa0527690:intron | 40.0% | |
CAATTAGGTTTCCTCATGGA+AGG | + | chr4_1:192614-192633 | None:intergenic | 40.0% | |
AAGTACAACACTGTTGTCCT+AGG | + | chr4_1:192774-192793 | None:intergenic | 40.0% | |
AAGAGAGAGAGAGAGAAGGA+GGG | + | chr4_1:189901-189920 | None:intergenic | 45.0% | |
AAAGAGAGAGAGAGAGAAGG+AGG | + | chr4_1:189902-189921 | None:intergenic | 45.0% | |
CAGAAAGAGAGAGAGAGAGA+AGG | + | chr4_1:189905-189924 | None:intergenic | 45.0% | |
! | CTTCCAAAGAGCTTTATCGC+AGG | + | chr4_1:190115-190134 | None:intergenic | 45.0% |
CTGCGATAAAGCTCTTTGGA+AGG | - | chr4_1:190113-190132 | Msa0527690:three_prime_UTR | 45.0% | |
GAGATGAAGAGTCATTGGCA+GGG | + | chr4_1:190165-190184 | None:intergenic | 45.0% | |
AGAGGGAGATGAAGAGTCAT+TGG | + | chr4_1:190170-190189 | None:intergenic | 45.0% | |
GAATTCTGGTGGAGAAGAAG+AGG | + | chr4_1:190188-190207 | None:intergenic | 45.0% | |
ATTGCAGAGGTGAATTCTGG+TGG | + | chr4_1:190199-190218 | None:intergenic | 45.0% | |
GTGGTTCCCATCAGTGAAAT+TGG | - | chr4_1:190506-190525 | Msa0527690:CDS | 45.0% | |
GAGAGCTCTTAAATCCTCAG+TGG | + | chr4_1:191426-191445 | None:intergenic | 45.0% | |
GTTTCAGCTGATGGAGTCTT+AGG | + | chr4_1:191479-191498 | None:intergenic | 45.0% | |
GAATTCTCGGTTTCAGCTGA+TGG | + | chr4_1:191488-191507 | None:intergenic | 45.0% | |
! | TCTTACAAAAATGACGGGGC+TGG | + | chr4_1:191658-191677 | None:intergenic | 45.0% |
TGTCAAAGATACTGGACTGC+AGG | - | chr4_1:191680-191699 | Msa0527690:intron | 45.0% | |
AGAAATGTTCCTGTTGGAGC+TGG | - | chr4_1:191713-191732 | Msa0527690:intron | 45.0% | |
!! | GAAGCCATGGTGTTACAAAG+CGG | + | chr4_1:191875-191894 | None:intergenic | 45.0% |
TCAGATAGAAAAGGCCACAC+CGG | - | chr4_1:192019-192038 | Msa0527690:intron | 45.0% | |
ATCTACCAACCCATTTGTGC+CGG | + | chr4_1:192041-192060 | None:intergenic | 45.0% | |
GGAATATGTTGCAACTGAGG+AGG | + | chr4_1:192082-192101 | None:intergenic | 45.0% | |
GGATAAGGCAAAAAGGGACT+TGG | + | chr4_1:192103-192122 | None:intergenic | 45.0% | |
! | GTCCCTTTTTGCCTTATCCA+TGG | - | chr4_1:192104-192123 | Msa0527690:intron | 45.0% |
! | TTTGGTGGACAAAAGGTAGG+AGG | + | chr4_1:192145-192164 | None:intergenic | 45.0% |
CAATATGCAGGTGGAGTTAC+TGG | + | chr4_1:192190-192209 | None:intergenic | 45.0% | |
CAGTAACTCCACCTGCATAT+TGG | - | chr4_1:192188-192207 | Msa0527690:intron | 45.0% | |
GTAACTCCACCTGCATATTG+GGG | - | chr4_1:192190-192209 | Msa0527690:intron | 45.0% | |
ATACAACCCCAATATGCAGG+TGG | + | chr4_1:192199-192218 | None:intergenic | 45.0% | |
CATGGTATATTCCATGGAGG+TGG | + | chr4_1:192223-192242 | None:intergenic | 45.0% | |
TTGAGTGTTTCCCCAAAGTC+GGG | + | chr4_1:192300-192319 | None:intergenic | 45.0% | |
CTTGAGTGTTTCCCCAAAGT+CGG | + | chr4_1:192301-192320 | None:intergenic | 45.0% | |
! | GACTTTGGGGAAACACTCAA+GGG | - | chr4_1:192300-192319 | Msa0527690:intron | 45.0% |
AACTCCTTGCAGCTTCACTT+GGG | + | chr4_1:192432-192451 | None:intergenic | 45.0% | |
AAGCTGCAAGGAGTTCATTG+TGG | - | chr4_1:192437-192456 | Msa0527690:intron | 45.0% | |
! | AATGGAGGAGGCATGTTCAA+TGG | - | chr4_1:192499-192518 | Msa0527690:intron | 45.0% |
TAGGACTCTTGCATGGAGTT+TGG | + | chr4_1:192755-192774 | None:intergenic | 45.0% | |
AAACTCCATGCAAGAGTCCT+AGG | - | chr4_1:192754-192773 | Msa0527690:CDS | 45.0% | |
AAACACCTGTTCAGTTAGGC+AGG | + | chr4_1:192830-192849 | None:intergenic | 45.0% | |
GCAGAAACACCTGTTCAGTT+AGG | + | chr4_1:192834-192853 | None:intergenic | 45.0% | |
!! | AATTTGTATAAAAAAAAAAA+GGG | + | chr4_1:189950-189969 | None:intergenic | 5.0% |
!!! | TAATTTGTATAAAAAAAAAA+AGG | + | chr4_1:189951-189970 | None:intergenic | 5.0% |
!! | ATAATATTTAATATATTATG+TGG | - | chr4_1:190562-190581 | Msa0527690:CDS | 5.0% |
GACCCTGCGATAAAGCTCTT+TGG | - | chr4_1:190109-190128 | Msa0527690:three_prime_UTR | 50.0% | |
GGGATGATCAGTGGAAGAAG+CGG | + | chr4_1:190145-190164 | None:intergenic | 50.0% | |
TCATTGGCAGGGATGATCAG+TGG | + | chr4_1:190154-190173 | None:intergenic | 50.0% | |
GGAGATGAAGAGTCATTGGC+AGG | + | chr4_1:190166-190185 | None:intergenic | 50.0% | |
AACTGAGGTACGTGCCATGA+AGG | - | chr4_1:190228-190247 | Msa0527690:three_prime_UTR | 50.0% | |
!! | GGTTGGTGAATTCACACCAG+AGG | + | chr4_1:190980-190999 | None:intergenic | 50.0% |
!! | ATCCTCAGTGGTTTGTTGCG+AGG | + | chr4_1:191414-191433 | None:intergenic | 50.0% |
TCAGCTGATGGAGTCTTAGG+AGG | + | chr4_1:191476-191495 | None:intergenic | 50.0% | |
TGTCCATGCTATTGCATCGC+GGG | + | chr4_1:191601-191620 | None:intergenic | 50.0% | |
GTGTCCATGCTATTGCATCG+CGG | + | chr4_1:191602-191621 | None:intergenic | 50.0% | |
CAAAGATACTGGACTGCAGG+AGG | - | chr4_1:191683-191702 | Msa0527690:intron | 50.0% | |
TCCTCCGCTTTGTAACACCA+TGG | - | chr4_1:191868-191887 | Msa0527690:intron | 50.0% | |
!! | GGAGGCATTGCAGAATTCCA+TGG | + | chr4_1:192124-192143 | None:intergenic | 50.0% |
GGCATACAACCCCAATATGC+AGG | + | chr4_1:192202-192221 | None:intergenic | 50.0% | |
TCTCAGTTCTGTCCCGACTT+TGG | - | chr4_1:192285-192304 | Msa0527690:intron | 50.0% | |
CTCAGTTCTGTCCCGACTTT+GGG | - | chr4_1:192286-192305 | Msa0527690:intron | 50.0% | |
TCAGTTCTGTCCCGACTTTG+GGG | - | chr4_1:192287-192306 | Msa0527690:intron | 50.0% | |
! | CGACTTTGGGGAAACACTCA+AGG | - | chr4_1:192299-192318 | Msa0527690:intron | 50.0% |
TTGGGGAAACACTCAAGGGA+TGG | - | chr4_1:192304-192323 | Msa0527690:intron | 50.0% | |
ATGACCCAAGTGAAGCTGCA+AGG | - | chr4_1:192425-192444 | Msa0527690:intron | 50.0% | |
GAACTCCTTGCAGCTTCACT+TGG | + | chr4_1:192433-192452 | None:intergenic | 50.0% | |
GCCAATTCTCTCAATGGAGG+AGG | - | chr4_1:192487-192506 | Msa0527690:intron | 50.0% | |
GCCTCCTCCATTGAGAGAAT+TGG | + | chr4_1:192491-192510 | None:intergenic | 50.0% | |
GTTGTCCTAGGACTCTTGCA+TGG | + | chr4_1:192762-192781 | None:intergenic | 50.0% | |
GCTCAAGATAGCAGCTACTG+AGG | + | chr4_1:192808-192827 | None:intergenic | 50.0% | |
TTGAGCCTGCCTAACTGAAC+AGG | - | chr4_1:192822-192841 | Msa0527690:exon | 50.0% | |
AGCCTCGCAACAAACCACTG+AGG | - | chr4_1:191409-191428 | Msa0527690:CDS | 55.0% | |
ATGCTATTGCATCGCGGGCA+TGG | + | chr4_1:191596-191615 | None:intergenic | 55.0% | |
ATGCCCGCGATGCAATAGCA+TGG | - | chr4_1:191595-191614 | Msa0527690:intron | 55.0% | |
!! | GCCATGGTGTTACAAAGCGG+AGG | + | chr4_1:191872-191891 | None:intergenic | 55.0% |
AAAGGCCACACCGGCACAAA+TGG | - | chr4_1:192028-192047 | Msa0527690:intron | 55.0% | |
AAGGCCACACCGGCACAAAT+GGG | - | chr4_1:192029-192048 | Msa0527690:intron | 55.0% | |
GGTGGACAAAAGGTAGGAGG+AGG | + | chr4_1:192142-192161 | None:intergenic | 55.0% | |
GCACTTCCTGGTGAGACACA+TGG | + | chr4_1:192241-192260 | None:intergenic | 55.0% | |
! | GCAGGGTTGGCATACATCAG+CGG | + | chr4_1:192571-192590 | None:intergenic | 55.0% |
GCTGATGTATGCCAACCCTG+CGG | - | chr4_1:192570-192589 | Msa0527690:intron | 55.0% | |
! | CCAACCCATTTGTGCCGGTG+TGG | + | chr4_1:192036-192055 | None:intergenic | 60.0% |
CCACACCGGCACAAATGGGT+TGG | - | chr4_1:192033-192052 | Msa0527690:intron | 60.0% | |
GGGGTTGTATGCCACCTCCA+TGG | - | chr4_1:192209-192228 | Msa0527690:intron | 60.0% | |
! | CCAACCCTGCGGCTTTATCG+CGG | - | chr4_1:192581-192600 | Msa0527690:intron | 60.0% |
GAGACCGCGATAAAGCCGCA+GGG | + | chr4_1:192588-192607 | None:intergenic | 60.0% | |
GCGGTCTCGTACCTTCCATG+AGG | - | chr4_1:192600-192619 | Msa0527690:intron | 60.0% | |
TTGCGGCGACCAGCTCCAAC+AGG | + | chr4_1:191725-191744 | None:intergenic | 65.0% | |
CCGCGATAAAGCCGCAGGGT+TGG | + | chr4_1:192584-192603 | None:intergenic | 65.0% | |
CGAGACCGCGATAAAGCCGC+AGG | + | chr4_1:192589-192608 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 189897 | 193028 | 189897 | ID=Msa0527690;Name=Msa0527690 |
chr4_1 | mRNA | 189897 | 193028 | 189897 | ID=Msa0527690-mRNA-1;Parent=Msa0527690;Name=Msa0527690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|398|467 |
chr4_1 | exon | 189897 | 191557 | 189897 | ID=Msa0527690-mRNA-1:exon:19;Parent=Msa0527690-mRNA-1 |
chr4_1 | exon | 192691 | 193028 | 192691 | ID=Msa0527690-mRNA-1:exon:18;Parent=Msa0527690-mRNA-1 |
chr4_1 | five_prime_UTR | 192832 | 193028 | 192832 | ID=Msa0527690-mRNA-1:five_prime_utr;Parent=Msa0527690-mRNA-1 |
chr4_1 | CDS | 192691 | 192831 | 192691 | ID=Msa0527690-mRNA-1:cds;Parent=Msa0527690-mRNA-1 |
chr4_1 | CDS | 190295 | 191557 | 190295 | ID=Msa0527690-mRNA-1:cds;Parent=Msa0527690-mRNA-1 |
chr4_1 | three_prime_UTR | 189897 | 190294 | 189897 | ID=Msa0527690-mRNA-1:three_prime_utr;Parent=Msa0527690-mRNA-1 |
Gene Sequence |
Protein sequence |