AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527690 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa0527690 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa0527690 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa0527690 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa0527690 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa0527690 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa0527690 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa0527690 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa0527690 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa0527690 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa0527690 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa0527690 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa0527690 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa0527690 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa0527690 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa0527690 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa0527690 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa0527690 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa0527690 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa0527690 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa0527690 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa0527690 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa0527690 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa0527690 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa0527690 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa0527690 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa0527690 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa0527690 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa0527690 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa0527690 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa0527690 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa0527690 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa0527690 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa0527690 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa0527690 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa0527690 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa0527690 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa0527690 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527690 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa0527690 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0527690 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0527690 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0527690 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa0527690 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa0527690 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa0527690 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa0527690 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa0527690 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa0527690 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa0527690 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa0527690 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa0527690 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa0527690 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa0527690 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa0527690 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa0527690 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa0527690 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa0527690 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa0527690 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa0527690 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa0527690 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0527690 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0527690 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa0527690 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa0527690 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa0527690 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa0527690 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa0527690 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa0527690 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa0527690 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa0527690 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa0527690 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa0527690 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa0527690 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa0527690 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa0527690 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa0527690 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0527690 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0527690 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0527690 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa0527690 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa0527690 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa0527690 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa0527690 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa0527690 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa0527690 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa0527690 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa0527690 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa0527690 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa0527690 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 4_1:-190617 Msa0527690:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 4_1:-191092 Msa0527690:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 4_1:+190277 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 4_1:+191532 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 4_1:+191092 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 4_1:-190714 Msa0527690:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 4_1:+190497 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 4_1:+190716 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 4_1:+189895 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 4_1:-191231 Msa0527690:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 4_1:+191282 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 4_1:+191091 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 4_1:+190796 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 4_1:-190715 Msa0527690:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 4_1:-191106 Msa0527690:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 4_1:-189957 Msa0527690:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 4_1:+190415 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 4_1:-191091 Msa0527690:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 4_1:+190743 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 4_1:+191427 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 4_1:+190151 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 4_1:+190208 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 4_1:-190958 Msa0527690:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 4_1:-190618 Msa0527690:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 4_1:-190875 Msa0527690:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 4_1:-192794 Msa0527690:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 4_1:+192976 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 4_1:-190860 Msa0527690:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 4_1:-190938 Msa0527690:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 4_1:+190498 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 4_1:+190653 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 4_1:+190473 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 4_1:+192736 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 4_1:+191405 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 4_1:-190851 Msa0527690:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 4_1:-191085 Msa0527690:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 4_1:-190986 Msa0527690:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 4_1:-190047 Msa0527690:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 4_1:+192704 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 4_1:-190081 Msa0527690:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 4_1:-190455 Msa0527690:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 4_1:+190606 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 4_1:+190734 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 4_1:-190186 Msa0527690:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 4_1:+190373 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 4_1:-190454 Msa0527690:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 4_1:-190422 Msa0527690:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 4_1:+190754 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 4_1:+192740 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 4_1:-190404 Msa0527690:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 4_1:+191418 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 4_1:+191310 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 4_1:+192718 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 4_1:+190788 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 4_1:-190149 Msa0527690:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 4_1:+191115 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 4_1:-190046 Msa0527690:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 4_1:+191181 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 4_1:+190132 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 4_1:+190322 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 4_1:-190932 Msa0527690:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 4_1:+190474 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 4_1:-190893 Msa0527690:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 4_1:-190874 Msa0527690:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 4_1:+190704 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 4_1:+190076 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 4_1:-190384 Msa0527690:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 4_1:+190292 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 4_1:+190605 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 4_1:-191223 Msa0527690:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 4_1:+190865 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 4_1:+191305 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 4_1:+190317 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 4_1:+192818 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 4_1:-190604 Msa0527690:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 4_1:-190957 Msa0527690:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 4_1:+190288 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 4_1:+191492 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 4_1:+190746 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 4_1:+190677 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 4_1:+190072 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 4_1:+192791 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 4_1:-191196 Msa0527690:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 4_1:+191430 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 4_1:+190758 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 4_1:+192719 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 4_1:-190416 Msa0527690:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 4_1:+192792 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 4_1:+190825 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 4_1:+190782 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 4_1:+190761 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 4_1:+190824 None:intergenic
TGAGTGAAAATATTATGAGA+TGG 0.574965 4_1:+192876 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 4_1:-191190 Msa0527690:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 4_1:+190821 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 4_1:-190599 Msa0527690:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 4_1:-190694 Msa0527690:CDS
CATGGTATATTCCATGGAGG+TGG 0.595774 4_1:+190683 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 4_1:+190144 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 4_1:+190764 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 4_1:+190870 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 4_1:-191130 Msa0527690:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 4_1:-190616 Msa0527690:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 4_1:-190870 Msa0527690:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 4_1:-190713 Msa0527690:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 4_1:-191220 Msa0527690:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 4_1:-190390 Msa0527690:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 4_1:-192790 Msa0527690:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 4_1:-190671 Msa0527690:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 4_1:+191018 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 4_1:+192741 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 4_1:-191131 Msa0527690:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 4_1:+192752 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 4_1:+190665 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 4_1:+192694 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 4_1:-190603 Msa0527690:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 4_1:-190478 Msa0527690:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 4_1:+191304 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 4_1:-191308 Msa0527690:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 4_1:-190322 Msa0527690:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 4_1:+192761 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 4_1:+191480 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 4_1:+190335 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 4_1:+190098 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 4_1:+191093 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 4_1:-190884 Msa0527690:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 4_1:-191517 Msa0527690:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 4_1:-190419 Msa0527690:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 4_1:-192690 Msa0527690:intron
GCCATGGTGTTACAAAGCGG+AGG 0.666467 4_1:+191034 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 4_1:+192707 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 4_1:-191035 Msa0527690:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 4_1:-190466 Msa0527690:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 4_1:-190369 Msa0527690:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 4_1:+190707 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 4_1:+191031 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 4_1:+190318 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 4_1:-190303 Msa0527690:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 4_1:+190680 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 4_1:-190333 Msa0527690:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 4_1:-191494 Msa0527690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTATAAAAAAAAAAAG+GGG + chr4_1:189949-189968 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG - chr4_1:190860-190879 Msa0527690:CDS 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG - chr4_1:190611-190630 Msa0527690:CDS 15.0%
!! TATATAAAAATAGCAGAAAA+GGG + chr4_1:191098-191117 None:intergenic 15.0%
!! TTATATAAAAATAGCAGAAA+AGG + chr4_1:191099-191118 None:intergenic 15.0%
!!! TTAATCATATTCATTGTTTT+AGG - chr4_1:191346-191365 Msa0527690:CDS 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG + chr4_1:190326-190345 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG + chr4_1:190327-190346 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG - chr4_1:190333-190352 Msa0527690:CDS 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG - chr4_1:190469-190488 Msa0527690:CDS 20.0%
!! TAAAACTAATCTATGGTATT+TGG + chr4_1:190909-190928 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG - chr4_1:190909-190928 Msa0527690:CDS 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG - chr4_1:191262-191281 Msa0527690:CDS 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG + chr4_1:191624-191643 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG - chr4_1:192717-192736 Msa0527690:CDS 20.0%
!!! AGATTTGATAATATGTTGTT+GGG - chr4_1:192857-192876 Msa0527690:five_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG + chr4_1:190030-190049 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG - chr4_1:190332-190351 Msa0527690:CDS 25.0%
!! TTTTGATGTCAATTGAATTG+AGG - chr4_1:190373-190392 Msa0527690:CDS 25.0%
! AAATTGGATCGAATTTATTC+TGG - chr4_1:190522-190541 Msa0527690:CDS 25.0%
! TAACCAAAAAACTTCAATCA+AGG + chr4_1:190710-190729 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG + chr4_1:190742-190761 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG - chr4_1:190925-190944 Msa0527690:CDS 25.0%
!!! CTGCATATAATTTTAGTATG+AGG + chr4_1:191134-191153 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG + chr4_1:191501-191520 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG + chr4_1:191558-191577 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG + chr4_1:191663-191682 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG + chr4_1:191664-191683 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG + chr4_1:191742-191761 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG - chr4_1:192010-192029 Msa0527690:intron 25.0%
! TTTCAATGCAATTCACAATT+AGG + chr4_1:192629-192648 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG - chr4_1:192856-192875 Msa0527690:five_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG - chr4_1:192946-192965 Msa0527690:five_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG + chr4_1:192975-192994 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG + chr4_1:189930-189949 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG + chr4_1:190245-190264 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG + chr4_1:190592-190611 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG - chr4_1:190704-190723 Msa0527690:CDS 30.0%
! CGACTTGAACTAAACTATTT+TGG - chr4_1:190740-190759 Msa0527690:CDS 30.0%
!!! TGTTATTTTGACACAGAACA+AGG + chr4_1:190793-190812 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG + chr4_1:190840-190859 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG - chr4_1:190872-190891 Msa0527690:CDS 30.0%
CAGTCCATAAAACTAATCTA+TGG + chr4_1:190916-190935 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG + chr4_1:191001-191020 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG - chr4_1:191021-191040 Msa0527690:CDS 30.0%
GCATACGTGTATAAAAACAT+TGG + chr4_1:191193-191212 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG + chr4_1:191193-191212 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG - chr4_1:191221-191240 Msa0527690:CDS 30.0%
AACTTACTGTGTACACAAAA+GGG + chr4_1:191313-191332 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG + chr4_1:191314-191333 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG + chr4_1:191374-191393 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG + chr4_1:191662-191681 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG - chr4_1:191672-191691 Msa0527690:intron 30.0%
CAAACTATGTAATCCATTAG+GGG + chr4_1:191813-191832 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG + chr4_1:191814-191833 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG - chr4_1:191812-191831 Msa0527690:intron 30.0%
ACTCAAAATTGTGTGTCAAA+TGG - chr4_1:191917-191936 Msa0527690:intron 30.0%
! TAGAATGCTAATGGATAGTT+TGG + chr4_1:192163-192182 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG + chr4_1:192355-192374 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG + chr4_1:192408-192427 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG + chr4_1:192409-192428 None:intergenic 30.0%
GGAGAGAATCTTCAAAAAAA+AGG + chr4_1:192990-193009 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG + chr4_1:190059-190078 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG - chr4_1:190081-190100 Msa0527690:three_prime_UTR 35.0%
TTTACCTCTGACATTTCTGT+AGG + chr4_1:190088-190107 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG + chr4_1:190322-190341 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG - chr4_1:190394-190413 Msa0527690:CDS 35.0%
TGTGGCTCAAATTCATTATG+TGG - chr4_1:190487-190506 Msa0527690:CDS 35.0%
TTCGATCCAATTTCACTGAT+GGG + chr4_1:190515-190534 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG + chr4_1:190516-190535 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG - chr4_1:190582-190601 Msa0527690:CDS 35.0%
ACAGAACAAGGACATGAATA+TGG + chr4_1:190781-190800 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG + chr4_1:190951-190970 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG - chr4_1:191357-191376 Msa0527690:CDS 35.0%
ACAATGAGAAATGTTCCTGT+TGG - chr4_1:191707-191726 Msa0527690:intron 35.0%
! TCGACATTTGATAATTCCAG+AGG - chr4_1:191772-191791 Msa0527690:intron 35.0%
! CGACATTTGATAATTCCAGA+GGG - chr4_1:191773-191792 Msa0527690:intron 35.0%
GCTAAACTTAATTCCCCTAA+TGG - chr4_1:191797-191816 Msa0527690:intron 35.0%
!! CCCTAATGGATTACATAGTT+TGG - chr4_1:191811-191830 Msa0527690:intron 35.0%
CCCAAACTATGTAATCCATT+AGG + chr4_1:191815-191834 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG - chr4_1:191818-191837 Msa0527690:intron 35.0%
ATCATGCAAGTTCGTATAGT+AGG - chr4_1:191945-191964 Msa0527690:intron 35.0%
TCATGCAAGTTCGTATAGTA+GGG - chr4_1:191946-191965 Msa0527690:intron 35.0%
AGGGAAAATGATCACTCAAT+TGG - chr4_1:191965-191984 Msa0527690:intron 35.0%
AATGATCACTCAATTGGAGT+TGG - chr4_1:191971-191990 Msa0527690:intron 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG - chr4_1:192043-192062 Msa0527690:intron 35.0%
TTGGTAGATAAAGGAGTTGA+AGG - chr4_1:192052-192071 Msa0527690:intron 35.0%
TTCCATGGATAAGGCAAAAA+GGG + chr4_1:192109-192128 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG + chr4_1:192110-192129 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG + chr4_1:192118-192137 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG + chr4_1:192160-192179 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG + chr4_1:192172-192191 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG + chr4_1:192341-192360 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG + chr4_1:192367-192386 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG + chr4_1:192618-192637 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG + chr4_1:192698-192717 None:intergenic 35.0%
! TTCCAAAGAGCTTTATCGCA+GGG + chr4_1:190114-190133 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG + chr4_1:190187-190206 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG + chr4_1:190202-190221 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG + chr4_1:190212-190231 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG - chr4_1:190213-190232 Msa0527690:three_prime_UTR 40.0%
TCCTACAATACTTATGCCTC+TGG - chr4_1:190961-190980 Msa0527690:CDS 40.0%
! ACCAGAGGCATAAGTATTGT+AGG + chr4_1:190965-190984 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG + chr4_1:190997-191016 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG + chr4_1:191035-191054 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG - chr4_1:191386-191405 Msa0527690:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG + chr4_1:191581-191600 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG + chr4_1:191582-191601 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG + chr4_1:191791-191810 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG + chr4_1:191888-191907 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG + chr4_1:192081-192100 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG + chr4_1:192085-192104 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG + chr4_1:192148-192167 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG + chr4_1:192152-192171 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG - chr4_1:192189-192208 Msa0527690:intron 40.0%
ACACATGGTATATTCCATGG+AGG + chr4_1:192226-192245 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG + chr4_1:192229-192248 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG - chr4_1:192232-192251 Msa0527690:intron 40.0%
!! TGATTAACAGAAGCACTTCC+TGG + chr4_1:192253-192272 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG - chr4_1:192448-192467 Msa0527690:intron 40.0%
GTTCATTGTGGTCAAAGCTT+GGG - chr4_1:192449-192468 Msa0527690:intron 40.0%
GACAAAGCCAATTCTCTCAA+TGG - chr4_1:192481-192500 Msa0527690:intron 40.0%
AAAGCCAATTCTCTCAATGG+AGG - chr4_1:192484-192503 Msa0527690:intron 40.0%
! GTTCAATGGATTTCAGTCCA+AGG - chr4_1:192513-192532 Msa0527690:intron 40.0%
TGGATTTCAGTCCAAGGTAA+AGG - chr4_1:192519-192538 Msa0527690:intron 40.0%
GTGATTCATGTCCTTTACCT+TGG + chr4_1:192533-192552 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG - chr4_1:192534-192553 Msa0527690:intron 40.0%
CAATTAGGTTTCCTCATGGA+AGG + chr4_1:192614-192633 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG + chr4_1:192774-192793 None:intergenic 40.0%
AAGAGAGAGAGAGAGAAGGA+GGG + chr4_1:189901-189920 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAAGG+AGG + chr4_1:189902-189921 None:intergenic 45.0%
CAGAAAGAGAGAGAGAGAGA+AGG + chr4_1:189905-189924 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG + chr4_1:190115-190134 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG - chr4_1:190113-190132 Msa0527690:three_prime_UTR 45.0%
GAGATGAAGAGTCATTGGCA+GGG + chr4_1:190165-190184 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG + chr4_1:190170-190189 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG + chr4_1:190188-190207 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG + chr4_1:190199-190218 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG - chr4_1:190506-190525 Msa0527690:CDS 45.0%
GAGAGCTCTTAAATCCTCAG+TGG + chr4_1:191426-191445 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG + chr4_1:191479-191498 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG + chr4_1:191488-191507 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG + chr4_1:191658-191677 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG - chr4_1:191680-191699 Msa0527690:intron 45.0%
AGAAATGTTCCTGTTGGAGC+TGG - chr4_1:191713-191732 Msa0527690:intron 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG + chr4_1:191875-191894 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG - chr4_1:192019-192038 Msa0527690:intron 45.0%
ATCTACCAACCCATTTGTGC+CGG + chr4_1:192041-192060 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG + chr4_1:192082-192101 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG + chr4_1:192103-192122 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG - chr4_1:192104-192123 Msa0527690:intron 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG + chr4_1:192145-192164 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG + chr4_1:192190-192209 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG - chr4_1:192188-192207 Msa0527690:intron 45.0%
GTAACTCCACCTGCATATTG+GGG - chr4_1:192190-192209 Msa0527690:intron 45.0%
ATACAACCCCAATATGCAGG+TGG + chr4_1:192199-192218 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG + chr4_1:192223-192242 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG + chr4_1:192300-192319 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG + chr4_1:192301-192320 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG - chr4_1:192300-192319 Msa0527690:intron 45.0%
AACTCCTTGCAGCTTCACTT+GGG + chr4_1:192432-192451 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG - chr4_1:192437-192456 Msa0527690:intron 45.0%
! AATGGAGGAGGCATGTTCAA+TGG - chr4_1:192499-192518 Msa0527690:intron 45.0%
TAGGACTCTTGCATGGAGTT+TGG + chr4_1:192755-192774 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG - chr4_1:192754-192773 Msa0527690:CDS 45.0%
AAACACCTGTTCAGTTAGGC+AGG + chr4_1:192830-192849 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG + chr4_1:192834-192853 None:intergenic 45.0%
!! AATTTGTATAAAAAAAAAAA+GGG + chr4_1:189950-189969 None:intergenic 5.0%
!!! TAATTTGTATAAAAAAAAAA+AGG + chr4_1:189951-189970 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG - chr4_1:190562-190581 Msa0527690:CDS 5.0%
GACCCTGCGATAAAGCTCTT+TGG - chr4_1:190109-190128 Msa0527690:three_prime_UTR 50.0%
GGGATGATCAGTGGAAGAAG+CGG + chr4_1:190145-190164 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG + chr4_1:190154-190173 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG + chr4_1:190166-190185 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG - chr4_1:190228-190247 Msa0527690:three_prime_UTR 50.0%
!! GGTTGGTGAATTCACACCAG+AGG + chr4_1:190980-190999 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG + chr4_1:191414-191433 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG + chr4_1:191476-191495 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG + chr4_1:191601-191620 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG + chr4_1:191602-191621 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG - chr4_1:191683-191702 Msa0527690:intron 50.0%
TCCTCCGCTTTGTAACACCA+TGG - chr4_1:191868-191887 Msa0527690:intron 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG + chr4_1:192124-192143 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG + chr4_1:192202-192221 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG - chr4_1:192285-192304 Msa0527690:intron 50.0%
CTCAGTTCTGTCCCGACTTT+GGG - chr4_1:192286-192305 Msa0527690:intron 50.0%
TCAGTTCTGTCCCGACTTTG+GGG - chr4_1:192287-192306 Msa0527690:intron 50.0%
! CGACTTTGGGGAAACACTCA+AGG - chr4_1:192299-192318 Msa0527690:intron 50.0%
TTGGGGAAACACTCAAGGGA+TGG - chr4_1:192304-192323 Msa0527690:intron 50.0%
ATGACCCAAGTGAAGCTGCA+AGG - chr4_1:192425-192444 Msa0527690:intron 50.0%
GAACTCCTTGCAGCTTCACT+TGG + chr4_1:192433-192452 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG - chr4_1:192487-192506 Msa0527690:intron 50.0%
GCCTCCTCCATTGAGAGAAT+TGG + chr4_1:192491-192510 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG + chr4_1:192762-192781 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG + chr4_1:192808-192827 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG - chr4_1:192822-192841 Msa0527690:exon 50.0%
AGCCTCGCAACAAACCACTG+AGG - chr4_1:191409-191428 Msa0527690:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG + chr4_1:191596-191615 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG - chr4_1:191595-191614 Msa0527690:intron 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG + chr4_1:191872-191891 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG - chr4_1:192028-192047 Msa0527690:intron 55.0%
AAGGCCACACCGGCACAAAT+GGG - chr4_1:192029-192048 Msa0527690:intron 55.0%
GGTGGACAAAAGGTAGGAGG+AGG + chr4_1:192142-192161 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG + chr4_1:192241-192260 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG + chr4_1:192571-192590 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG - chr4_1:192570-192589 Msa0527690:intron 55.0%
! CCAACCCATTTGTGCCGGTG+TGG + chr4_1:192036-192055 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG - chr4_1:192033-192052 Msa0527690:intron 60.0%
GGGGTTGTATGCCACCTCCA+TGG - chr4_1:192209-192228 Msa0527690:intron 60.0%
! CCAACCCTGCGGCTTTATCG+CGG - chr4_1:192581-192600 Msa0527690:intron 60.0%
GAGACCGCGATAAAGCCGCA+GGG + chr4_1:192588-192607 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG - chr4_1:192600-192619 Msa0527690:intron 60.0%
TTGCGGCGACCAGCTCCAAC+AGG + chr4_1:191725-191744 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG + chr4_1:192584-192603 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG + chr4_1:192589-192608 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 189897 193028 189897 ID=Msa0527690;Name=Msa0527690
chr4_1 mRNA 189897 193028 189897 ID=Msa0527690-mRNA-1;Parent=Msa0527690;Name=Msa0527690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|398|467
chr4_1 exon 189897 191557 189897 ID=Msa0527690-mRNA-1:exon:19;Parent=Msa0527690-mRNA-1
chr4_1 exon 192691 193028 192691 ID=Msa0527690-mRNA-1:exon:18;Parent=Msa0527690-mRNA-1
chr4_1 five_prime_UTR 192832 193028 192832 ID=Msa0527690-mRNA-1:five_prime_utr;Parent=Msa0527690-mRNA-1
chr4_1 CDS 192691 192831 192691 ID=Msa0527690-mRNA-1:cds;Parent=Msa0527690-mRNA-1
chr4_1 CDS 190295 191557 190295 ID=Msa0527690-mRNA-1:cds;Parent=Msa0527690-mRNA-1
chr4_1 three_prime_UTR 189897 190294 189897 ID=Msa0527690-mRNA-1:three_prime_utr;Parent=Msa0527690-mRNA-1
Gene Sequence

>Msa0527690

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA

Protein sequence

>Msa0527690

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*