AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359490 MtrunA17_Chr1g0149941 96.124 516 16 3 1 513 46 560 0.0 1003
Msa1359490 MtrunA17_Chr3g0137061 65.175 514 159 7 1 513 1 495 0.0 596
Msa1359490 MtrunA17_Chr2g0283691 34.264 394 215 12 125 513 86 440 1.17e-42 157
Msa1359490 MtrunA17_Chr8g0377151 30.065 306 195 6 113 410 415 709 2.70e-32 131
Msa1359490 MtrunA17_Chr4g0031431 33.333 282 167 9 141 416 368 634 4.05e-27 115
Msa1359490 MtrunA17_Chr3g0122721 28.013 307 203 6 111 410 412 707 1.69e-25 110
Msa1359490 MtrunA17_Chr1g0152561 27.869 366 236 12 56 418 3 343 4.34e-25 106
Msa1359490 MtrunA17_Chr5g0435041 28.571 371 222 10 125 487 20 355 1.89e-24 105
Msa1359490 MtrunA17_Chr1g0183781 31.707 287 182 8 125 410 440 713 4.55e-23 103
Msa1359490 MtrunA17_Chr3g0106931 31.944 288 182 7 124 410 552 826 7.70e-23 102
Msa1359490 MtrunA17_Chr4g0044411 30.258 271 175 6 142 410 389 647 8.87e-23 102
Msa1359490 MtrunA17_Chr7g0261371 29.123 285 188 7 127 410 516 787 1.28e-21 99.0
Msa1359490 MtrunA17_Chr7g0237931 31.365 271 174 5 141 411 349 607 3.85e-21 97.1
Msa1359490 MtrunA17_Chr7g0248251 30.515 272 175 6 141 410 382 641 1.46e-20 95.1
Msa1359490 MtrunA17_Chr1g0199321 31.915 282 178 6 136 415 355 624 3.07e-20 94.4
Msa1359490 MtrunA17_Chr3g0111451 28.796 382 224 12 121 497 44 382 1.11e-19 91.3
Msa1359490 MtrunA17_Chr5g0429231 32.601 273 169 4 143 410 51 313 8.34e-19 87.8
Msa1359490 MtrunA17_Chr3g0134761 28.197 305 178 10 123 410 49 329 2.41e-18 86.3
Msa1359490 MtrunA17_Chr5g0437411 32.394 213 132 5 141 350 420 623 3.80e-18 87.8
Msa1359490 MtrunA17_Chr2g0290151 28.328 293 196 7 120 410 169 449 1.14e-16 82.4
Msa1359490 MtrunA17_Chr6g0449461 26.552 290 197 5 126 410 3 281 3.76e-15 76.6
Msa1359490 MtrunA17_Chr3g0118001 25.839 298 200 7 115 410 208 486 1.57e-12 69.7
Msa1359490 MtrunA17_Chr2g0284461 27.682 289 188 7 144 426 414 687 1.64e-12 70.1
Msa1359490 MtrunA17_Chr4g0071261 75.926 54 13 0 106 159 1 54 1.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359490 AT4G31890.3 59.480 538 173 13 1 513 1 518 0.0 555
Msa1359490 AT4G31890.2 59.480 538 173 13 1 513 1 518 0.0 555
Msa1359490 AT4G31890.1 59.480 538 173 13 1 513 1 518 0.0 555
Msa1359490 AT2G25130.1 57.588 514 160 16 1 503 1 467 1.95e-172 494
Msa1359490 AT2G27430.1 31.507 438 266 10 78 513 33 438 5.24e-42 156
Msa1359490 AT1G67530.2 30.132 302 193 5 122 416 422 712 6.86e-31 127
Msa1359490 AT1G67530.1 30.132 302 193 5 122 416 422 712 6.86e-31 127
Msa1359490 AT1G67530.4 30.132 302 193 5 122 416 422 712 6.86e-31 127
Msa1359490 AT1G24330.1 29.240 342 214 7 109 433 399 729 1.15e-29 124
Msa1359490 AT1G24330.2 29.240 342 214 7 109 433 399 729 1.15e-29 124
Msa1359490 AT2G23140.3 31.579 342 212 11 71 410 306 627 7.84e-27 115
Msa1359490 AT2G23140.5 31.579 342 212 11 71 410 306 627 7.84e-27 115
Msa1359490 AT2G23140.2 31.579 342 212 11 71 410 495 816 3.04e-26 113
Msa1359490 AT2G23140.4 31.579 342 212 11 71 410 495 816 3.04e-26 113
Msa1359490 AT2G23140.1 31.579 342 212 11 71 410 498 819 3.52e-26 113
Msa1359490 AT3G46510.1 33.212 274 163 8 141 409 369 627 2.34e-25 110
Msa1359490 AT2G28830.1 32.595 316 183 12 112 419 279 572 1.38e-24 107
Msa1359490 AT1G27910.1 29.012 324 212 7 94 410 391 703 1.56e-24 108
Msa1359490 AT1G71020.2 31.387 274 172 7 141 410 210 471 5.56e-22 99.4
Msa1359490 AT1G71020.1 31.387 274 172 7 141 410 358 619 7.65e-22 99.8
Msa1359490 AT1G23030.1 31.502 273 172 7 141 410 348 608 1.38e-21 99.0
Msa1359490 AT3G54790.2 31.818 286 180 9 127 410 440 712 1.94e-21 98.6
Msa1359490 AT3G54790.3 31.818 286 180 9 127 410 476 748 2.31e-21 98.6
Msa1359490 AT3G54790.1 31.818 286 180 9 127 410 476 748 2.31e-21 98.6
Msa1359490 AT5G67340.1 25.532 376 255 8 36 410 346 697 9.41e-21 96.3
Msa1359490 AT5G67340.2 25.532 376 255 8 36 410 346 697 9.41e-21 96.3
Msa1359490 AT3G54850.1 30.249 281 182 6 140 418 361 629 9.51e-21 96.3
Msa1359490 AT3G01400.1 28.571 273 181 7 140 410 79 339 2.12e-20 93.2
Msa1359490 AT3G03440.1 27.027 370 225 11 129 488 69 403 1.26e-17 85.5
Msa1359490 AT5G58680.1 29.210 291 187 9 125 410 62 338 2.53e-16 80.9
Msa1359490 AT5G42340.1 30.357 280 179 7 140 417 395 660 3.65e-16 82.0
Msa1359490 AT4G12710.1 30.576 278 176 5 141 410 62 330 4.15e-15 77.8
Msa1359490 AT4G16490.1 26.708 322 220 8 93 410 152 461 2.10e-13 72.8
Msa1359490 AT5G14510.1 26.506 249 167 8 168 410 41 279 3.25e-12 68.2

Find 132 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAAGATTGCATTGTTTC+TGG 0.144110 tig0016715:+213814 Msa1359490:three_prime_UTR
GATTCGAATAAACCGATAAT+TGG 0.146060 tig0016715:+212794 Msa1359490:CDS
AGCCAATGTTCAGTTTATTT+TGG 0.151005 tig0016715:+212937 Msa1359490:CDS
CTTCTTGAGTTGTCGCTTAT+TGG 0.172434 tig0016715:+213229 Msa1359490:CDS
CTGAAGAGTTCTAACTAAAA+AGG 0.175660 tig0016715:-212834 None:intergenic
CCTTTCAATCCTTAGCAATT+TGG 0.178700 tig0016715:+213021 Msa1359490:CDS
GACGATGAAGTTCCGCAAAT+TGG 0.211163 tig0016715:-213364 None:intergenic
TATTTCTAGTTTAGGTTTCT+TGG 0.229319 tig0016715:+213794 Msa1359490:three_prime_UTR
CCCGGATGTGTTTCCTATCT+TGG 0.249308 tig0016715:+213081 Msa1359490:CDS
GGGAACTACAACGGAAATTT+AGG 0.256409 tig0016715:+213325 Msa1359490:CDS
GATAAAGGGAAACAGGTTTC+AGG 0.257229 tig0016715:+213304 Msa1359490:CDS
GTGGGAGAATGTTGGTGTTT+TGG 0.267693 tig0016715:-211623 None:intergenic
GTAAAATATATTTCTAGTTT+AGG 0.269652 tig0016715:+213786 Msa1359490:three_prime_UTR
AATGCTCGCTAAGGAGAATT+TGG 0.287918 tig0016715:+212005 Msa1359490:CDS
TGAGGTTTCCGACGTTGTTC+CGG 0.317043 tig0016715:-211573 None:intergenic
GAGAATAGATAAAGGGAAAC+AGG 0.320824 tig0016715:+213297 Msa1359490:CDS
ATAAAGACTAACATACATTA+TGG 0.335251 tig0016715:-213655 None:intergenic
GAAACGGGCGTCGAGGCTAT+TGG 0.335825 tig0016715:+213267 Msa1359490:CDS
GAAAGTTTGAGAATAGATAA+AGG 0.351248 tig0016715:+213289 Msa1359490:CDS
ACGATGAAGTTCCGCAAATT+GGG 0.353654 tig0016715:-213363 None:intergenic
GCAGCTGAAGACCCAATTAT+CGG 0.368315 tig0016715:-212806 None:intergenic
CTCTACGCATTGCTCAATCT+TGG 0.375202 tig0016715:+212117 Msa1359490:CDS
TCTTGGTCGATGTATTGAAT+TGG 0.380089 tig0016715:+213098 Msa1359490:CDS
TCTCCCACCACTTCCGTCTC+TGG 0.384503 tig0016715:+211638 Msa1359490:CDS
GTTATGTCGCATAAATCTTA+TGG 0.386596 tig0016715:+213166 Msa1359490:CDS
AGTTTCTCCGATTTCACATT+CGG 0.396316 tig0016715:-211835 None:intergenic
AAAATAAACTGAACATTGGC+TGG 0.400264 tig0016715:-212935 None:intergenic
TGGTGGAACGGTGGTGGTGG+TGG 0.401730 tig0016715:-211603 None:intergenic
TTCAAAACCGAATGTGAAAT+CGG 0.408736 tig0016715:+211828 Msa1359490:CDS
AAAGAAGCCATTGTTAAAGT+TGG 0.415455 tig0016715:+212671 Msa1359490:CDS
TTCAATACATCGACCAAGAT+AGG 0.418350 tig0016715:-213094 None:intergenic
ATCTTCAGATGGTATTGATT+CGG 0.420177 tig0016715:+212724 Msa1359490:CDS
AAAGTTTGAGAATAGATAAA+GGG 0.425462 tig0016715:+213290 Msa1359490:CDS
AGGAGGAGGAAAAGAGTGTT+CGG 0.438802 tig0016715:+213411 Msa1359490:CDS
TACTACTTTGACTCAGAAAC+GGG 0.441375 tig0016715:+213252 Msa1359490:CDS
ATTCGAATAAACCGATAATT+GGG 0.445804 tig0016715:+212795 Msa1359490:CDS
TCTTCTGAACATGGCGGAGA+TGG 0.446454 tig0016715:+211864 Msa1359490:CDS
GCGGTGATTGTAACGGGAGG+TGG 0.458786 tig0016715:-211722 None:intergenic
CCAAATTGCTAAGGATTGAA+AGG 0.463067 tig0016715:-213021 None:intergenic
AAGCAGGCCATGATCGAGGC+AGG 0.466247 tig0016715:+213193 Msa1359490:CDS
CCAGATGGAGGAGGAGGAGG+AGG 0.469128 tig0016715:+213397 Msa1359490:CDS
TTCAGTGTCATATTCGTTGA+AGG 0.469707 tig0016715:-211755 None:intergenic
TTCACCTGAATGCCAGGAAA+AGG 0.471606 tig0016715:+213126 Msa1359490:CDS
ACGGCGGCGGTGATTGTAAC+GGG 0.473080 tig0016715:-211728 None:intergenic
CACAATCCCTGCCTCGATCA+TGG 0.473174 tig0016715:-213200 None:intergenic
AAACCAGATGGAGGAGGAGG+AGG 0.478442 tig0016715:+213394 Msa1359490:CDS
GTACTACTTTGACTCAGAAA+CGG 0.478774 tig0016715:+213251 Msa1359490:CDS
TTTGCATGAGGAAGATGATT+CGG 0.481809 tig0016715:+211951 Msa1359490:CDS
CCAATTGAGTTTATCAGAAA+CGG 0.486775 tig0016715:-212974 None:intergenic
ACCAAGATAGGAAACACATC+CGG 0.487266 tig0016715:-213082 None:intergenic
ACTGTCTCTGCCCCAATTTG+CGG 0.487673 tig0016715:+213352 Msa1359490:CDS
GAATGATTCACCTGAATGCC+AGG 0.488606 tig0016715:+213120 Msa1359490:CDS
AAGGAGAATTTGGAAGTAAG+AGG 0.491585 tig0016715:+212015 Msa1359490:CDS
CCGTTTCTGATAAACTCAAT+TGG 0.492077 tig0016715:+212974 Msa1359490:CDS
ATAAAGGGAAACAGGTTTCA+GGG 0.497964 tig0016715:+213305 Msa1359490:CDS
GGTGGTGGTGGCCGAGAATG+AGG 0.498770 tig0016715:-211591 None:intergenic
AGAAGAGGAAGCGAAGAAGA+AGG 0.499264 tig0016715:+211891 Msa1359490:CDS
TTTCGATGTGCAGTGAGTCT+AGG 0.503361 tig0016715:+213618 Msa1359490:three_prime_UTR
GCATTGCTCAATCTTGGAAT+CGG 0.503671 tig0016715:+212123 Msa1359490:CDS
CTCCGCCATGTTCAGAAGAT+CGG 0.507404 tig0016715:-211860 None:intergenic
AACGTCGGAAACCTCATTCT+CGG 0.508681 tig0016715:+211580 Msa1359490:CDS
AGTTCCAGAGACGGAAGTGG+TGG 0.509557 tig0016715:-211642 None:intergenic
CTTCAATGTAGTTAGTTCAT+CGG 0.515827 tig0016715:+211533 Msa1359490:five_prime_UTR
ATCTTCCACGCCGTCAGCTG+CGG 0.516615 tig0016715:+211694 Msa1359490:CDS
CGATGAACTAACTACATTGA+AGG 0.517042 tig0016715:-211532 None:intergenic
AAAGGCAATAAGTGCTGTCC+CGG 0.518431 tig0016715:+213063 Msa1359490:CDS
GACTATATCTTGAGGCAAGT+TGG 0.519499 tig0016715:-213530 None:intergenic
TACAGAACCAACTTTAACAA+TGG 0.525029 tig0016715:-212678 None:intergenic
AAGCTTATTGAATCTTCAGA+TGG 0.525195 tig0016715:+212713 Msa1359490:CDS
TTCCACGCCGTCAGCTGCGG+TGG 0.526745 tig0016715:+211697 Msa1359490:CDS
ATCAACTAGAGCAGGTAGAA+AGG 0.527044 tig0016715:+213045 Msa1359490:CDS
ACATCGAAAATTCTTCAGAA+TGG 0.527971 tig0016715:-213604 None:intergenic
CGTTGAAGGTGCTACGGCGG+CGG 0.537750 tig0016715:-211741 None:intergenic
CAGCTTCCTCCTTCGACAAA+CGG 0.537814 tig0016715:+211791 Msa1359490:CDS
ATTCTGTTGCCGTTTGTCGA+AGG 0.541771 tig0016715:-211800 None:intergenic
GAGAGTTCCAGAGACGGAAG+TGG 0.541905 tig0016715:-211645 None:intergenic
CGGAAGTGGTGGGAGAATGT+TGG 0.542844 tig0016715:-211631 None:intergenic
TTCCAAAATAAACTGAACAT+TGG 0.543173 tig0016715:-212939 None:intergenic
GATAAACTCAATTGGCGACA+TGG 0.543215 tig0016715:+212982 Msa1359490:CDS
CCAAGATAGGAAACACATCC+GGG 0.543957 tig0016715:-213081 None:intergenic
GAGACGACGGAGGGAGGCGA+TGG 0.543987 tig0016715:-211671 None:intergenic
TAAATCTTATGGTGACAAGC+AGG 0.546845 tig0016715:+213177 Msa1359490:CDS
AATTTGGTATCAACTAGAGC+AGG 0.548849 tig0016715:+213037 Msa1359490:CDS
GATGAACTAACTACATTGAA+GGG 0.549880 tig0016715:-211531 None:intergenic
GAATCGAGCATTGCGACTAA+CGG 0.551485 tig0016715:-212066 None:intergenic
TACGGCGGCGGTGATTGTAA+CGG 0.552541 tig0016715:-211729 None:intergenic
AGAGGAACACTTTCAATGCT+CGG 0.553240 tig0016715:+212033 Msa1359490:CDS
GGTGGCGCCACCGCAGCTGA+CGG 0.558285 tig0016715:-211704 None:intergenic
GTAGTTAGTTCATCGGAGAA+TGG 0.558823 tig0016715:+211540 Msa1359490:exon
AGTGACTTAAAATGATCTGA+TGG 0.562549 tig0016715:-213553 None:intergenic
CACCGTGAGAATGCTCGCTA+AGG 0.563128 tig0016715:+211996 Msa1359490:CDS
GCAAAACCAGATGGAGGAGG+AGG 0.565741 tig0016715:+213391 Msa1359490:CDS
CTCCTTAGCGAGCATTCTCA+CGG 0.567241 tig0016715:-211998 None:intergenic
CGCCACCGCAGCTGACGGCG+TGG 0.567727 tig0016715:-211699 None:intergenic
CTGTTGCCGTTTGTCGAAGG+AGG 0.569127 tig0016715:-211797 None:intergenic
TCGTCGTGTGCAAAACCAGA+TGG 0.569844 tig0016715:+213382 Msa1359490:CDS
CATGAGGAAAATTGTGAAGA+GGG 0.571586 tig0016715:+213507 Msa1359490:CDS
GAAACTTAAGAAGCTTGTGA+AGG 0.574556 tig0016715:+211927 Msa1359490:CDS
AAATAAACTGAACATTGGCT+GGG 0.578121 tig0016715:-212934 None:intergenic
ATAAACTCAATTGGCGACAT+GGG 0.579986 tig0016715:+212983 Msa1359490:CDS
TGAGTTTGCAAAACAACATG+AGG 0.582736 tig0016715:+213491 Msa1359490:CDS
CATATTCGTTGAAGGTGCTA+CGG 0.583082 tig0016715:-211747 None:intergenic
TAGTTGATACCAAATTGCTA+AGG 0.585434 tig0016715:-213030 None:intergenic
GAAGATGAGACGACGGAGGG+AGG 0.594413 tig0016715:-211677 None:intergenic
TCGAGCATTGCGACTAACGG+TGG 0.599056 tig0016715:-212063 None:intergenic
GGAGAATGGCAAACTATCAC+CGG 0.599573 tig0016715:+211554 Msa1359490:exon
AACTATCACCGGAACAACGT+CGG 0.600978 tig0016715:+211565 Msa1359490:CDS
TTCAGATGGTATTGATTCGG+CGG 0.602952 tig0016715:+212727 Msa1359490:CDS
CGATGAAGTTCCGCAAATTG+GGG 0.609312 tig0016715:-213362 None:intergenic
GTTCCAGAGACGGAAGTGGT+GGG 0.614760 tig0016715:-211641 None:intergenic
AGGAAGATGATTCGGTGAAG+CGG 0.615812 tig0016715:+211959 Msa1359490:CDS
ACATGAGGAAAATTGTGAAG+AGG 0.616000 tig0016715:+213506 Msa1359490:CDS
GTGACTTAAAATGATCTGAT+GGG 0.620285 tig0016715:-213552 None:intergenic
GGCGGAGATGGAGACAGAAG+AGG 0.621626 tig0016715:+211876 Msa1359490:CDS
ACTCTCCGATCTTCTGAACA+TGG 0.624622 tig0016715:+211855 Msa1359490:CDS
TGTGCAAAACCAGATGGAGG+AGG 0.627739 tig0016715:+213388 Msa1359490:CDS
TGGAGAGAGAGTTCCAGAGA+CGG 0.628731 tig0016715:-211651 None:intergenic
GTGGAAGATGAGACGACGGA+GGG 0.638181 tig0016715:-211680 None:intergenic
GCTTGTGAAGGATTTGCATG+AGG 0.641834 tig0016715:+211939 Msa1359490:CDS
ATTCGTTGAAGGTGCTACGG+CGG 0.652805 tig0016715:-211744 None:intergenic
TGACTCAGAAACGGGCGTCG+AGG 0.654081 tig0016715:+213260 Msa1359490:CDS
TTTGTCGAAGGAGGAAGCTG+AGG 0.654659 tig0016715:-211788 None:intergenic
AGCAGGCCATGATCGAGGCA+GGG 0.660279 tig0016715:+213194 Msa1359490:CDS
TGACAAGCAGGCCATGATCG+AGG 0.670822 tig0016715:+213189 Msa1359490:CDS
TCTGATGGGACTATATCTTG+AGG 0.670824 tig0016715:-213538 None:intergenic
TCGTGTGCAAAACCAGATGG+AGG 0.672294 tig0016715:+213385 Msa1359490:CDS
CGTGGAAGATGAGACGACGG+AGG 0.676052 tig0016715:-211681 None:intergenic
CAGGTTTCAGGGAACTACAA+CGG 0.687032 tig0016715:+213316 Msa1359490:CDS
CGGCGTGGAAGATGAGACGA+CGG 0.695582 tig0016715:-211684 None:intergenic
GCGGCGGTGATTGTAACGGG+AGG 0.698798 tig0016715:-211725 None:intergenic
CTTAGCGAGCATTCTCACGG+TGG 0.717190 tig0016715:-211995 None:intergenic
CTCCGATCTTCTGAACATGG+CGG 0.718028 tig0016715:+211858 Msa1359490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAGTATTTATATATT+GGG - tig0016715:211451-211470 None:intergenic 10.0%
!!! TATTTTCAGTATTTATATAT+TGG - tig0016715:211452-211471 None:intergenic 10.0%
!!! AAAAGTTCATTTTTTTTATT+TGG + tig0016715:212620-212639 Msa1359490:intron 10.0%
!!! ATTTTCAGTATTTATATATT+GGG - tig0016715:211451-211470 None:intergenic 10.0%
!!! TATTTTCAGTATTTATATAT+TGG - tig0016715:211452-211471 None:intergenic 10.0%
!!! AAAAGTTCATTTTTTTTATT+TGG + tig0016715:212620-212639 Msa1359490:intron 10.0%
!!! TTTTCAGTATTTATATATTG+GGG - tig0016715:211450-211469 None:intergenic 15.0%
!!! GTAAAATATATTTCTAGTTT+AGG + tig0016715:213786-213805 Msa1359490:three_prime_UTR 15.0%
!! TTATATACTTATATATTGTG+TGG - tig0016715:211425-211444 None:intergenic 15.0%
!!! TTTTCAGTATTTATATATTG+GGG - tig0016715:211450-211469 None:intergenic 15.0%
!!! GTAAAATATATTTCTAGTTT+AGG + tig0016715:213786-213805 Msa1359490:three_prime_UTR 15.0%
!!! TTGTTAACTTTCTTTTTTTG+TGG + tig0016715:212321-212340 Msa1359490:intron 20.0%
!! AAAGTTTGAGAATAGATAAA+GGG + tig0016715:213290-213309 Msa1359490:CDS 20.0%
!! ATAAAGACTAACATACATTA+TGG - tig0016715:213658-213677 None:intergenic 20.0%
!!! TTGTTAACTTTCTTTTTTTG+TGG + tig0016715:212321-212340 Msa1359490:intron 20.0%
!! AAAGTTTGAGAATAGATAAA+GGG + tig0016715:213290-213309 Msa1359490:CDS 20.0%
!! ATAAAGACTAACATACATTA+TGG - tig0016715:213658-213677 None:intergenic 20.0%
!!! AACTTTCTTTTTTTGTGGTT+AGG + tig0016715:212326-212345 Msa1359490:intron 25.0%
!! TTTTTGTGGTTAGGTAATTT+TGG + tig0016715:212335-212354 Msa1359490:intron 25.0%
!!! CAAGCATGTGATTTTAATTT+TGG + tig0016715:212441-212460 Msa1359490:intron 25.0%
! ATATGTATGATTGTGATGTT+AGG + tig0016715:212585-212604 Msa1359490:intron 25.0%
! ATTCGAATAAACCGATAATT+GGG + tig0016715:212795-212814 Msa1359490:CDS 25.0%
!! TGAAGAGTTCTAACTAAAAA+GGG - tig0016715:212836-212855 None:intergenic 25.0%
! TTCCAAAATAAACTGAACAT+TGG - tig0016715:212942-212961 None:intergenic 25.0%
!!! GTTTATTTTGGAAACTGATT+TGG + tig0016715:212949-212968 Msa1359490:CDS 25.0%
! GAAAGTTTGAGAATAGATAA+AGG + tig0016715:213289-213308 Msa1359490:CDS 25.0%
!!! TATTTCTAGTTTAGGTTTCT+TGG + tig0016715:213794-213813 Msa1359490:three_prime_UTR 25.0%
!!! AACTTTCTTTTTTTGTGGTT+AGG + tig0016715:212326-212345 Msa1359490:intron 25.0%
!! TTTTTGTGGTTAGGTAATTT+TGG + tig0016715:212335-212354 Msa1359490:intron 25.0%
!!! CAAGCATGTGATTTTAATTT+TGG + tig0016715:212441-212460 Msa1359490:intron 25.0%
! ATATGTATGATTGTGATGTT+AGG + tig0016715:212585-212604 Msa1359490:intron 25.0%
! ATTCGAATAAACCGATAATT+GGG + tig0016715:212795-212814 Msa1359490:CDS 25.0%
!! TGAAGAGTTCTAACTAAAAA+GGG - tig0016715:212836-212855 None:intergenic 25.0%
! TTCCAAAATAAACTGAACAT+TGG - tig0016715:212942-212961 None:intergenic 25.0%
!!! GTTTATTTTGGAAACTGATT+TGG + tig0016715:212949-212968 Msa1359490:CDS 25.0%
! GAAAGTTTGAGAATAGATAA+AGG + tig0016715:213289-213308 Msa1359490:CDS 25.0%
!!! TATTTCTAGTTTAGGTTTCT+TGG + tig0016715:213794-213813 Msa1359490:three_prime_UTR 25.0%
CTGAAAATAAACCAAAAACG+TGG + tig0016715:211463-211482 Msa1359490:five_prime_UTR 30.0%
GATGAACTAACTACATTGAA+GGG - tig0016715:211534-211553 None:intergenic 30.0%
CTTCAATGTAGTTAGTTCAT+CGG + tig0016715:211533-211552 Msa1359490:five_prime_UTR 30.0%
TTCAAAACCGAATGTGAAAT+CGG + tig0016715:211828-211847 Msa1359490:CDS 30.0%
TACATACAACTGTAAGATCA+CGG + tig0016715:212244-212263 Msa1359490:intron 30.0%
!!! GGTGGTAATTTTGATTGATT+AGG + tig0016715:212356-212375 Msa1359490:intron 30.0%
AAAGAAGCCATTGTTAAAGT+TGG + tig0016715:212671-212690 Msa1359490:CDS 30.0%
TACAGAACCAACTTTAACAA+TGG - tig0016715:212681-212700 None:intergenic 30.0%
AAGCTTATTGAATCTTCAGA+TGG + tig0016715:212713-212732 Msa1359490:CDS 30.0%
!! ATCTTCAGATGGTATTGATT+CGG + tig0016715:212724-212743 Msa1359490:CDS 30.0%
! TTTTCTTGGATTAAGTGCTT+TGG + tig0016715:212772-212791 Msa1359490:CDS 30.0%
GATTCGAATAAACCGATAAT+TGG + tig0016715:212794-212813 Msa1359490:CDS 30.0%
! CTGAAGAGTTCTAACTAAAA+AGG - tig0016715:212837-212856 None:intergenic 30.0%
! AAATAAACTGAACATTGGCT+GGG - tig0016715:212937-212956 None:intergenic 30.0%
AAAATAAACTGAACATTGGC+TGG - tig0016715:212938-212957 None:intergenic 30.0%
! AGCCAATGTTCAGTTTATTT+TGG + tig0016715:212937-212956 Msa1359490:CDS 30.0%
CCAATTGAGTTTATCAGAAA+CGG - tig0016715:212977-212996 None:intergenic 30.0%
! TAGTTGATACCAAATTGCTA+AGG - tig0016715:213033-213052 None:intergenic 30.0%
!! AAAGGTTTCGTATGTTTTGA+TGG + tig0016715:213144-213163 Msa1359490:CDS 30.0%
GTTATGTCGCATAAATCTTA+TGG + tig0016715:213166-213185 Msa1359490:CDS 30.0%
!!! TGTTGTTTTGCAAACTCAAT+TGG - tig0016715:213489-213508 None:intergenic 30.0%
GTGACTTAAAATGATCTGAT+GGG - tig0016715:213555-213574 None:intergenic 30.0%
AGTGACTTAAAATGATCTGA+TGG - tig0016715:213556-213575 None:intergenic 30.0%
ACATCGAAAATTCTTCAGAA+TGG - tig0016715:213607-213626 None:intergenic 30.0%
CTGAAAATAAACCAAAAACG+TGG + tig0016715:211463-211482 Msa1359490:five_prime_UTR 30.0%
GATGAACTAACTACATTGAA+GGG - tig0016715:211534-211553 None:intergenic 30.0%
CTTCAATGTAGTTAGTTCAT+CGG + tig0016715:211533-211552 Msa1359490:five_prime_UTR 30.0%
TTCAAAACCGAATGTGAAAT+CGG + tig0016715:211828-211847 Msa1359490:CDS 30.0%
TACATACAACTGTAAGATCA+CGG + tig0016715:212244-212263 Msa1359490:intron 30.0%
!!! GGTGGTAATTTTGATTGATT+AGG + tig0016715:212356-212375 Msa1359490:intron 30.0%
AAAGAAGCCATTGTTAAAGT+TGG + tig0016715:212671-212690 Msa1359490:CDS 30.0%
TACAGAACCAACTTTAACAA+TGG - tig0016715:212681-212700 None:intergenic 30.0%
AAGCTTATTGAATCTTCAGA+TGG + tig0016715:212713-212732 Msa1359490:CDS 30.0%
!! ATCTTCAGATGGTATTGATT+CGG + tig0016715:212724-212743 Msa1359490:CDS 30.0%
! TTTTCTTGGATTAAGTGCTT+TGG + tig0016715:212772-212791 Msa1359490:CDS 30.0%
GATTCGAATAAACCGATAAT+TGG + tig0016715:212794-212813 Msa1359490:CDS 30.0%
! CTGAAGAGTTCTAACTAAAA+AGG - tig0016715:212837-212856 None:intergenic 30.0%
! AAATAAACTGAACATTGGCT+GGG - tig0016715:212937-212956 None:intergenic 30.0%
AAAATAAACTGAACATTGGC+TGG - tig0016715:212938-212957 None:intergenic 30.0%
! AGCCAATGTTCAGTTTATTT+TGG + tig0016715:212937-212956 Msa1359490:CDS 30.0%
CCAATTGAGTTTATCAGAAA+CGG - tig0016715:212977-212996 None:intergenic 30.0%
! TAGTTGATACCAAATTGCTA+AGG - tig0016715:213033-213052 None:intergenic 30.0%
!! AAAGGTTTCGTATGTTTTGA+TGG + tig0016715:213144-213163 Msa1359490:CDS 30.0%
GTTATGTCGCATAAATCTTA+TGG + tig0016715:213166-213185 Msa1359490:CDS 30.0%
!!! TGTTGTTTTGCAAACTCAAT+TGG - tig0016715:213489-213508 None:intergenic 30.0%
GTGACTTAAAATGATCTGAT+GGG - tig0016715:213555-213574 None:intergenic 30.0%
AGTGACTTAAAATGATCTGA+TGG - tig0016715:213556-213575 None:intergenic 30.0%
ACATCGAAAATTCTTCAGAA+TGG - tig0016715:213607-213626 None:intergenic 30.0%
CGATGAACTAACTACATTGA+AGG - tig0016715:211535-211554 None:intergenic 35.0%
TTCAGTGTCATATTCGTTGA+AGG - tig0016715:211758-211777 None:intergenic 35.0%
AGTTTCTCCGATTTCACATT+CGG - tig0016715:211838-211857 None:intergenic 35.0%
GAAACTTAAGAAGCTTGTGA+AGG + tig0016715:211927-211946 Msa1359490:CDS 35.0%
TTTGCATGAGGAAGATGATT+CGG + tig0016715:211951-211970 Msa1359490:CDS 35.0%
AAGGAGAATTTGGAAGTAAG+AGG + tig0016715:212015-212034 Msa1359490:CDS 35.0%
ACATACAACTGTAAGATCAC+GGG + tig0016715:212245-212264 Msa1359490:intron 35.0%
! TTGTGGTTAGGTAATTTTGG+TGG + tig0016715:212338-212357 Msa1359490:intron 35.0%
TTGTGATGTTAGGAGAATAG+TGG + tig0016715:212595-212614 Msa1359490:intron 35.0%
CCGTTTCTGATAAACTCAAT+TGG + tig0016715:212974-212993 Msa1359490:CDS 35.0%
ATAAACTCAATTGGCGACAT+GGG + tig0016715:212983-213002 Msa1359490:CDS 35.0%
CCAAATTGCTAAGGATTGAA+AGG - tig0016715:213024-213043 None:intergenic 35.0%
CCTTTCAATCCTTAGCAATT+TGG + tig0016715:213021-213040 Msa1359490:CDS 35.0%
AATTTGGTATCAACTAGAGC+AGG + tig0016715:213037-213056 Msa1359490:CDS 35.0%
TTCAATACATCGACCAAGAT+AGG - tig0016715:213097-213116 None:intergenic 35.0%
TCTTGGTCGATGTATTGAAT+TGG + tig0016715:213098-213117 Msa1359490:CDS 35.0%
! AAACATACGAAACCTTTTCC+TGG - tig0016715:213141-213160 None:intergenic 35.0%
TAAATCTTATGGTGACAAGC+AGG + tig0016715:213177-213196 Msa1359490:CDS 35.0%
GTACTACTTTGACTCAGAAA+CGG + tig0016715:213251-213270 Msa1359490:CDS 35.0%
TACTACTTTGACTCAGAAAC+GGG + tig0016715:213252-213271 Msa1359490:CDS 35.0%
GAGAATAGATAAAGGGAAAC+AGG + tig0016715:213297-213316 Msa1359490:CDS 35.0%
ATAAAGGGAAACAGGTTTCA+GGG + tig0016715:213305-213324 Msa1359490:CDS 35.0%
TGAGTTTGCAAAACAACATG+AGG + tig0016715:213491-213510 Msa1359490:CDS 35.0%
ACATGAGGAAAATTGTGAAG+AGG + tig0016715:213506-213525 Msa1359490:CDS 35.0%
CATGAGGAAAATTGTGAAGA+GGG + tig0016715:213507-213526 Msa1359490:CDS 35.0%
TGGTAAGATTGCATTGTTTC+TGG + tig0016715:213814-213833 Msa1359490:three_prime_UTR 35.0%
CGATGAACTAACTACATTGA+AGG - tig0016715:211535-211554 None:intergenic 35.0%
TTCAGTGTCATATTCGTTGA+AGG - tig0016715:211758-211777 None:intergenic 35.0%
AGTTTCTCCGATTTCACATT+CGG - tig0016715:211838-211857 None:intergenic 35.0%
GAAACTTAAGAAGCTTGTGA+AGG + tig0016715:211927-211946 Msa1359490:CDS 35.0%
TTTGCATGAGGAAGATGATT+CGG + tig0016715:211951-211970 Msa1359490:CDS 35.0%
AAGGAGAATTTGGAAGTAAG+AGG + tig0016715:212015-212034 Msa1359490:CDS 35.0%
ACATACAACTGTAAGATCAC+GGG + tig0016715:212245-212264 Msa1359490:intron 35.0%
! TTGTGGTTAGGTAATTTTGG+TGG + tig0016715:212338-212357 Msa1359490:intron 35.0%
TTGTGATGTTAGGAGAATAG+TGG + tig0016715:212595-212614 Msa1359490:intron 35.0%
CCGTTTCTGATAAACTCAAT+TGG + tig0016715:212974-212993 Msa1359490:CDS 35.0%
ATAAACTCAATTGGCGACAT+GGG + tig0016715:212983-213002 Msa1359490:CDS 35.0%
CCAAATTGCTAAGGATTGAA+AGG - tig0016715:213024-213043 None:intergenic 35.0%
CCTTTCAATCCTTAGCAATT+TGG + tig0016715:213021-213040 Msa1359490:CDS 35.0%
AATTTGGTATCAACTAGAGC+AGG + tig0016715:213037-213056 Msa1359490:CDS 35.0%
TTCAATACATCGACCAAGAT+AGG - tig0016715:213097-213116 None:intergenic 35.0%
TCTTGGTCGATGTATTGAAT+TGG + tig0016715:213098-213117 Msa1359490:CDS 35.0%
! AAACATACGAAACCTTTTCC+TGG - tig0016715:213141-213160 None:intergenic 35.0%
TAAATCTTATGGTGACAAGC+AGG + tig0016715:213177-213196 Msa1359490:CDS 35.0%
GTACTACTTTGACTCAGAAA+CGG + tig0016715:213251-213270 Msa1359490:CDS 35.0%
TACTACTTTGACTCAGAAAC+GGG + tig0016715:213252-213271 Msa1359490:CDS 35.0%
GAGAATAGATAAAGGGAAAC+AGG + tig0016715:213297-213316 Msa1359490:CDS 35.0%
ATAAAGGGAAACAGGTTTCA+GGG + tig0016715:213305-213324 Msa1359490:CDS 35.0%
TGAGTTTGCAAAACAACATG+AGG + tig0016715:213491-213510 Msa1359490:CDS 35.0%
ACATGAGGAAAATTGTGAAG+AGG + tig0016715:213506-213525 Msa1359490:CDS 35.0%
CATGAGGAAAATTGTGAAGA+GGG + tig0016715:213507-213526 Msa1359490:CDS 35.0%
TGGTAAGATTGCATTGTTTC+TGG + tig0016715:213814-213833 Msa1359490:three_prime_UTR 35.0%
AACCAAAAACGTGGACTCAA+CGG + tig0016715:211472-211491 Msa1359490:five_prime_UTR 40.0%
AGAGAGAGAGAGAGTGAAAA+GGG - tig0016715:211499-211518 None:intergenic 40.0%
GTAGTTAGTTCATCGGAGAA+TGG + tig0016715:211540-211559 Msa1359490:exon 40.0%
!!! ATGTTGGTGTTTTGGTGGAA+CGG - tig0016715:211618-211637 None:intergenic 40.0%
!! CATATTCGTTGAAGGTGCTA+CGG - tig0016715:211750-211769 None:intergenic 40.0%
AATGCTCGCTAAGGAGAATT+TGG + tig0016715:212005-212024 Msa1359490:CDS 40.0%
AGAGGAACACTTTCAATGCT+CGG + tig0016715:212033-212052 Msa1359490:CDS 40.0%
GCATTGCTCAATCTTGGAAT+CGG + tig0016715:212123-212142 Msa1359490:CDS 40.0%
!! TTCAGATGGTATTGATTCGG+CGG + tig0016715:212727-212746 Msa1359490:CDS 40.0%
! GCGATTGTTGCGAATTTTCT+TGG + tig0016715:212758-212777 Msa1359490:CDS 40.0%
GATAAACTCAATTGGCGACA+TGG + tig0016715:212982-213001 Msa1359490:CDS 40.0%
ATCAACTAGAGCAGGTAGAA+AGG + tig0016715:213045-213064 Msa1359490:CDS 40.0%
ACCAAGATAGGAAACACATC+CGG - tig0016715:213085-213104 None:intergenic 40.0%
! CTTCTTGAGTTGTCGCTTAT+TGG + tig0016715:213229-213248 Msa1359490:CDS 40.0%
GATAAAGGGAAACAGGTTTC+AGG + tig0016715:213304-213323 Msa1359490:CDS 40.0%
GGGAACTACAACGGAAATTT+AGG + tig0016715:213325-213344 Msa1359490:CDS 40.0%
ACGATGAAGTTCCGCAAATT+GGG - tig0016715:213366-213385 None:intergenic 40.0%
GACTATATCTTGAGGCAAGT+TGG - tig0016715:213533-213552 None:intergenic 40.0%
TCTGATGGGACTATATCTTG+AGG - tig0016715:213541-213560 None:intergenic 40.0%
AACCAAAAACGTGGACTCAA+CGG + tig0016715:211472-211491 Msa1359490:five_prime_UTR 40.0%
AGAGAGAGAGAGAGTGAAAA+GGG - tig0016715:211499-211518 None:intergenic 40.0%
GTAGTTAGTTCATCGGAGAA+TGG + tig0016715:211540-211559 Msa1359490:exon 40.0%
!!! ATGTTGGTGTTTTGGTGGAA+CGG - tig0016715:211618-211637 None:intergenic 40.0%
!! CATATTCGTTGAAGGTGCTA+CGG - tig0016715:211750-211769 None:intergenic 40.0%
AATGCTCGCTAAGGAGAATT+TGG + tig0016715:212005-212024 Msa1359490:CDS 40.0%
AGAGGAACACTTTCAATGCT+CGG + tig0016715:212033-212052 Msa1359490:CDS 40.0%
GCATTGCTCAATCTTGGAAT+CGG + tig0016715:212123-212142 Msa1359490:CDS 40.0%
!! TTCAGATGGTATTGATTCGG+CGG + tig0016715:212727-212746 Msa1359490:CDS 40.0%
! GCGATTGTTGCGAATTTTCT+TGG + tig0016715:212758-212777 Msa1359490:CDS 40.0%
GATAAACTCAATTGGCGACA+TGG + tig0016715:212982-213001 Msa1359490:CDS 40.0%
ATCAACTAGAGCAGGTAGAA+AGG + tig0016715:213045-213064 Msa1359490:CDS 40.0%
ACCAAGATAGGAAACACATC+CGG - tig0016715:213085-213104 None:intergenic 40.0%
! CTTCTTGAGTTGTCGCTTAT+TGG + tig0016715:213229-213248 Msa1359490:CDS 40.0%
GATAAAGGGAAACAGGTTTC+AGG + tig0016715:213304-213323 Msa1359490:CDS 40.0%
GGGAACTACAACGGAAATTT+AGG + tig0016715:213325-213344 Msa1359490:CDS 40.0%
ACGATGAAGTTCCGCAAATT+GGG - tig0016715:213366-213385 None:intergenic 40.0%
GACTATATCTTGAGGCAAGT+TGG - tig0016715:213533-213552 None:intergenic 40.0%
TCTGATGGGACTATATCTTG+AGG - tig0016715:213541-213560 None:intergenic 40.0%
GAGAGAGAGAGAGAGTGAAA+AGG - tig0016715:211500-211519 None:intergenic 45.0%
GGAGAATGGCAAACTATCAC+CGG + tig0016715:211554-211573 Msa1359490:exon 45.0%
AACTATCACCGGAACAACGT+CGG + tig0016715:211565-211584 Msa1359490:CDS 45.0%
AACGTCGGAAACCTCATTCT+CGG + tig0016715:211580-211599 Msa1359490:CDS 45.0%
!! GGAGAATGTTGGTGTTTTGG+TGG - tig0016715:211623-211642 None:intergenic 45.0%
!! GTGGGAGAATGTTGGTGTTT+TGG - tig0016715:211626-211645 None:intergenic 45.0%
! ATTCTGTTGCCGTTTGTCGA+AGG - tig0016715:211803-211822 None:intergenic 45.0%
ACTCTCCGATCTTCTGAACA+TGG + tig0016715:211855-211874 Msa1359490:CDS 45.0%
AGAAGAGGAAGCGAAGAAGA+AGG + tig0016715:211891-211910 Msa1359490:CDS 45.0%
GCTTGTGAAGGATTTGCATG+AGG + tig0016715:211939-211958 Msa1359490:CDS 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG + tig0016715:211959-211978 Msa1359490:CDS 45.0%
! GAATCGAGCATTGCGACTAA+CGG - tig0016715:212069-212088 None:intergenic 45.0%
CTCTACGCATTGCTCAATCT+TGG + tig0016715:212117-212136 Msa1359490:CDS 45.0%
GCAGCTGAAGACCCAATTAT+CGG - tig0016715:212809-212828 None:intergenic 45.0%
! AAAGGCAATAAGTGCTGTCC+CGG + tig0016715:213063-213082 Msa1359490:CDS 45.0%
CCAAGATAGGAAACACATCC+GGG - tig0016715:213084-213103 None:intergenic 45.0%
GAATGATTCACCTGAATGCC+AGG + tig0016715:213120-213139 Msa1359490:CDS 45.0%
TTCACCTGAATGCCAGGAAA+AGG + tig0016715:213126-213145 Msa1359490:CDS 45.0%
! GAAACCTTTTCCTGGCATTC+AGG - tig0016715:213133-213152 None:intergenic 45.0%
CAGGTTTCAGGGAACTACAA+CGG + tig0016715:213316-213335 Msa1359490:CDS 45.0%
CGATGAAGTTCCGCAAATTG+GGG - tig0016715:213365-213384 None:intergenic 45.0%
GACGATGAAGTTCCGCAAAT+TGG - tig0016715:213367-213386 None:intergenic 45.0%
!! AGGAGGAGGAAAAGAGTGTT+CGG + tig0016715:213411-213430 Msa1359490:CDS 45.0%
TTTCGATGTGCAGTGAGTCT+AGG + tig0016715:213618-213637 Msa1359490:three_prime_UTR 45.0%
GAGAGAGAGAGAGAGTGAAA+AGG - tig0016715:211500-211519 None:intergenic 45.0%
GGAGAATGGCAAACTATCAC+CGG + tig0016715:211554-211573 Msa1359490:exon 45.0%
AACTATCACCGGAACAACGT+CGG + tig0016715:211565-211584 Msa1359490:CDS 45.0%
AACGTCGGAAACCTCATTCT+CGG + tig0016715:211580-211599 Msa1359490:CDS 45.0%
!! GGAGAATGTTGGTGTTTTGG+TGG - tig0016715:211623-211642 None:intergenic 45.0%
!! GTGGGAGAATGTTGGTGTTT+TGG - tig0016715:211626-211645 None:intergenic 45.0%
! ATTCTGTTGCCGTTTGTCGA+AGG - tig0016715:211803-211822 None:intergenic 45.0%
ACTCTCCGATCTTCTGAACA+TGG + tig0016715:211855-211874 Msa1359490:CDS 45.0%
AGAAGAGGAAGCGAAGAAGA+AGG + tig0016715:211891-211910 Msa1359490:CDS 45.0%
GCTTGTGAAGGATTTGCATG+AGG + tig0016715:211939-211958 Msa1359490:CDS 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG + tig0016715:211959-211978 Msa1359490:CDS 45.0%
! GAATCGAGCATTGCGACTAA+CGG - tig0016715:212069-212088 None:intergenic 45.0%
CTCTACGCATTGCTCAATCT+TGG + tig0016715:212117-212136 Msa1359490:CDS 45.0%
GCAGCTGAAGACCCAATTAT+CGG - tig0016715:212809-212828 None:intergenic 45.0%
! AAAGGCAATAAGTGCTGTCC+CGG + tig0016715:213063-213082 Msa1359490:CDS 45.0%
CCAAGATAGGAAACACATCC+GGG - tig0016715:213084-213103 None:intergenic 45.0%
GAATGATTCACCTGAATGCC+AGG + tig0016715:213120-213139 Msa1359490:CDS 45.0%
TTCACCTGAATGCCAGGAAA+AGG + tig0016715:213126-213145 Msa1359490:CDS 45.0%
! GAAACCTTTTCCTGGCATTC+AGG - tig0016715:213133-213152 None:intergenic 45.0%
CAGGTTTCAGGGAACTACAA+CGG + tig0016715:213316-213335 Msa1359490:CDS 45.0%
CGATGAAGTTCCGCAAATTG+GGG - tig0016715:213365-213384 None:intergenic 45.0%
GACGATGAAGTTCCGCAAAT+TGG - tig0016715:213367-213386 None:intergenic 45.0%
!! AGGAGGAGGAAAAGAGTGTT+CGG + tig0016715:213411-213430 Msa1359490:CDS 45.0%
TTTCGATGTGCAGTGAGTCT+AGG + tig0016715:213618-213637 Msa1359490:three_prime_UTR 45.0%
! GACCGTTGAGTCCACGTTTT+TGG - tig0016715:211477-211496 None:intergenic 50.0%
TGAGGTTTCCGACGTTGTTC+CGG - tig0016715:211576-211595 None:intergenic 50.0%
!!! TTGGTGTTTTGGTGGAACGG+TGG - tig0016715:211615-211634 None:intergenic 50.0%
TGGAGAGAGAGTTCCAGAGA+CGG - tig0016715:211654-211673 None:intergenic 50.0%
!! ATTCGTTGAAGGTGCTACGG+CGG - tig0016715:211747-211766 None:intergenic 50.0%
TTTGTCGAAGGAGGAAGCTG+AGG - tig0016715:211791-211810 None:intergenic 50.0%
CAGCTTCCTCCTTCGACAAA+CGG + tig0016715:211791-211810 Msa1359490:CDS 50.0%
CTCCGATCTTCTGAACATGG+CGG + tig0016715:211858-211877 Msa1359490:CDS 50.0%
CTCCGCCATGTTCAGAAGAT+CGG - tig0016715:211863-211882 None:intergenic 50.0%
! TCTTCTGAACATGGCGGAGA+TGG + tig0016715:211864-211883 Msa1359490:CDS 50.0%
CTCCTTAGCGAGCATTCTCA+CGG - tig0016715:212001-212020 None:intergenic 50.0%
CCCGGATGTGTTTCCTATCT+TGG + tig0016715:213081-213100 Msa1359490:CDS 50.0%
ACTGTCTCTGCCCCAATTTG+CGG + tig0016715:213352-213371 Msa1359490:CDS 50.0%
TCGTCGTGTGCAAAACCAGA+TGG + tig0016715:213382-213401 Msa1359490:CDS 50.0%
TCGTGTGCAAAACCAGATGG+AGG + tig0016715:213385-213404 Msa1359490:CDS 50.0%
TGTGCAAAACCAGATGGAGG+AGG + tig0016715:213388-213407 Msa1359490:CDS 50.0%
! GACCGTTGAGTCCACGTTTT+TGG - tig0016715:211477-211496 None:intergenic 50.0%
TGAGGTTTCCGACGTTGTTC+CGG - tig0016715:211576-211595 None:intergenic 50.0%
!!! TTGGTGTTTTGGTGGAACGG+TGG - tig0016715:211615-211634 None:intergenic 50.0%
TGGAGAGAGAGTTCCAGAGA+CGG - tig0016715:211654-211673 None:intergenic 50.0%
!! ATTCGTTGAAGGTGCTACGG+CGG - tig0016715:211747-211766 None:intergenic 50.0%
TTTGTCGAAGGAGGAAGCTG+AGG - tig0016715:211791-211810 None:intergenic 50.0%
CAGCTTCCTCCTTCGACAAA+CGG + tig0016715:211791-211810 Msa1359490:CDS 50.0%
CTCCGATCTTCTGAACATGG+CGG + tig0016715:211858-211877 Msa1359490:CDS 50.0%
CTCCGCCATGTTCAGAAGAT+CGG - tig0016715:211863-211882 None:intergenic 50.0%
! TCTTCTGAACATGGCGGAGA+TGG + tig0016715:211864-211883 Msa1359490:CDS 50.0%
CTCCTTAGCGAGCATTCTCA+CGG - tig0016715:212001-212020 None:intergenic 50.0%
CCCGGATGTGTTTCCTATCT+TGG + tig0016715:213081-213100 Msa1359490:CDS 50.0%
ACTGTCTCTGCCCCAATTTG+CGG + tig0016715:213352-213371 Msa1359490:CDS 50.0%
TCGTCGTGTGCAAAACCAGA+TGG + tig0016715:213382-213401 Msa1359490:CDS 50.0%
TCGTGTGCAAAACCAGATGG+AGG + tig0016715:213385-213404 Msa1359490:CDS 50.0%
TGTGCAAAACCAGATGGAGG+AGG + tig0016715:213388-213407 Msa1359490:CDS 50.0%
!! TTTTGGTGGAACGGTGGTGG+TGG - tig0016715:211609-211628 None:intergenic 55.0%
!!! GTGTTTTGGTGGAACGGTGG+TGG - tig0016715:211612-211631 None:intergenic 55.0%
! CGGAAGTGGTGGGAGAATGT+TGG - tig0016715:211634-211653 None:intergenic 55.0%
GTTCCAGAGACGGAAGTGGT+GGG - tig0016715:211644-211663 None:intergenic 55.0%
AGTTCCAGAGACGGAAGTGG+TGG - tig0016715:211645-211664 None:intergenic 55.0%
GAGAGTTCCAGAGACGGAAG+TGG - tig0016715:211648-211667 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG - tig0016715:211683-211702 None:intergenic 55.0%
TACGGCGGCGGTGATTGTAA+CGG - tig0016715:211732-211751 None:intergenic 55.0%
! CTGTTGCCGTTTGTCGAAGG+AGG - tig0016715:211800-211819 None:intergenic 55.0%
CTTAGCGAGCATTCTCACGG+TGG - tig0016715:211998-212017 None:intergenic 55.0%
CACCGTGAGAATGCTCGCTA+AGG + tig0016715:211996-212015 Msa1359490:CDS 55.0%
! TCGAGCATTGCGACTAACGG+TGG - tig0016715:212066-212085 None:intergenic 55.0%
TGACAAGCAGGCCATGATCG+AGG + tig0016715:213189-213208 Msa1359490:CDS 55.0%
CACAATCCCTGCCTCGATCA+TGG - tig0016715:213203-213222 None:intergenic 55.0%
GCAAAACCAGATGGAGGAGG+AGG + tig0016715:213391-213410 Msa1359490:CDS 55.0%
AAACCAGATGGAGGAGGAGG+AGG + tig0016715:213394-213413 Msa1359490:CDS 55.0%
!! TTTTGGTGGAACGGTGGTGG+TGG - tig0016715:211609-211628 None:intergenic 55.0%
!!! GTGTTTTGGTGGAACGGTGG+TGG - tig0016715:211612-211631 None:intergenic 55.0%
! CGGAAGTGGTGGGAGAATGT+TGG - tig0016715:211634-211653 None:intergenic 55.0%
GTTCCAGAGACGGAAGTGGT+GGG - tig0016715:211644-211663 None:intergenic 55.0%
AGTTCCAGAGACGGAAGTGG+TGG - tig0016715:211645-211664 None:intergenic 55.0%
GAGAGTTCCAGAGACGGAAG+TGG - tig0016715:211648-211667 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG - tig0016715:211683-211702 None:intergenic 55.0%
TACGGCGGCGGTGATTGTAA+CGG - tig0016715:211732-211751 None:intergenic 55.0%
! CTGTTGCCGTTTGTCGAAGG+AGG - tig0016715:211800-211819 None:intergenic 55.0%
CTTAGCGAGCATTCTCACGG+TGG - tig0016715:211998-212017 None:intergenic 55.0%
CACCGTGAGAATGCTCGCTA+AGG + tig0016715:211996-212015 Msa1359490:CDS 55.0%
! TCGAGCATTGCGACTAACGG+TGG - tig0016715:212066-212085 None:intergenic 55.0%
TGACAAGCAGGCCATGATCG+AGG + tig0016715:213189-213208 Msa1359490:CDS 55.0%
CACAATCCCTGCCTCGATCA+TGG - tig0016715:213203-213222 None:intergenic 55.0%
GCAAAACCAGATGGAGGAGG+AGG + tig0016715:213391-213410 Msa1359490:CDS 55.0%
AAACCAGATGGAGGAGGAGG+AGG + tig0016715:213394-213413 Msa1359490:CDS 55.0%
TCTCCCACCACTTCCGTCTC+TGG + tig0016715:211638-211657 Msa1359490:CDS 60.0%
GAAGATGAGACGACGGAGGG+AGG - tig0016715:211680-211699 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG - tig0016715:211684-211703 None:intergenic 60.0%
CGGCGTGGAAGATGAGACGA+CGG - tig0016715:211687-211706 None:intergenic 60.0%
ATCTTCCACGCCGTCAGCTG+CGG + tig0016715:211694-211713 Msa1359490:CDS 60.0%
! GCGGTGATTGTAACGGGAGG+TGG - tig0016715:211725-211744 None:intergenic 60.0%
ACGGCGGCGGTGATTGTAAC+GGG - tig0016715:211731-211750 None:intergenic 60.0%
GGCGGAGATGGAGACAGAAG+AGG + tig0016715:211876-211895 Msa1359490:CDS 60.0%
AAGCAGGCCATGATCGAGGC+AGG + tig0016715:213193-213212 Msa1359490:CDS 60.0%
AGCAGGCCATGATCGAGGCA+GGG + tig0016715:213194-213213 Msa1359490:CDS 60.0%
! TGACTCAGAAACGGGCGTCG+AGG + tig0016715:213260-213279 Msa1359490:CDS 60.0%
!! GAAACGGGCGTCGAGGCTAT+TGG + tig0016715:213267-213286 Msa1359490:CDS 60.0%
TCTCCCACCACTTCCGTCTC+TGG + tig0016715:211638-211657 Msa1359490:CDS 60.0%
GAAGATGAGACGACGGAGGG+AGG - tig0016715:211680-211699 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG - tig0016715:211684-211703 None:intergenic 60.0%
CGGCGTGGAAGATGAGACGA+CGG - tig0016715:211687-211706 None:intergenic 60.0%
ATCTTCCACGCCGTCAGCTG+CGG + tig0016715:211694-211713 Msa1359490:CDS 60.0%
! GCGGTGATTGTAACGGGAGG+TGG - tig0016715:211725-211744 None:intergenic 60.0%
ACGGCGGCGGTGATTGTAAC+GGG - tig0016715:211731-211750 None:intergenic 60.0%
GGCGGAGATGGAGACAGAAG+AGG + tig0016715:211876-211895 Msa1359490:CDS 60.0%
AAGCAGGCCATGATCGAGGC+AGG + tig0016715:213193-213212 Msa1359490:CDS 60.0%
AGCAGGCCATGATCGAGGCA+GGG + tig0016715:213194-213213 Msa1359490:CDS 60.0%
! TGACTCAGAAACGGGCGTCG+AGG + tig0016715:213260-213279 Msa1359490:CDS 60.0%
!! GAAACGGGCGTCGAGGCTAT+TGG + tig0016715:213267-213286 Msa1359490:CDS 60.0%
!! GGTGGTGGTGGCCGAGAATG+AGG - tig0016715:211594-211613 None:intergenic 65.0%
!! TGGTGGAACGGTGGTGGTGG+TGG - tig0016715:211606-211625 None:intergenic 65.0%
! GCGGCGGTGATTGTAACGGG+AGG - tig0016715:211728-211747 None:intergenic 65.0%
!! CGTTGAAGGTGCTACGGCGG+CGG - tig0016715:211744-211763 None:intergenic 65.0%
CCTCCTCCTCCTCCTCCATC+TGG - tig0016715:213400-213419 None:intergenic 65.0%
CCAGATGGAGGAGGAGGAGG+AGG + tig0016715:213397-213416 Msa1359490:CDS 65.0%
!! GGTGGTGGTGGCCGAGAATG+AGG - tig0016715:211594-211613 None:intergenic 65.0%
!! TGGTGGAACGGTGGTGGTGG+TGG - tig0016715:211606-211625 None:intergenic 65.0%
! GCGGCGGTGATTGTAACGGG+AGG - tig0016715:211728-211747 None:intergenic 65.0%
!! CGTTGAAGGTGCTACGGCGG+CGG - tig0016715:211744-211763 None:intergenic 65.0%
CCTCCTCCTCCTCCTCCATC+TGG - tig0016715:213400-213419 None:intergenic 65.0%
CCAGATGGAGGAGGAGGAGG+AGG + tig0016715:213397-213416 Msa1359490:CDS 65.0%
GAGACGACGGAGGGAGGCGA+TGG - tig0016715:211674-211693 None:intergenic 70.0%
TTCCACGCCGTCAGCTGCGG+TGG + tig0016715:211697-211716 Msa1359490:CDS 70.0%
GAGACGACGGAGGGAGGCGA+TGG - tig0016715:211674-211693 None:intergenic 70.0%
TTCCACGCCGTCAGCTGCGG+TGG + tig0016715:211697-211716 Msa1359490:CDS 70.0%
GGTGGCGCCACCGCAGCTGA+CGG - tig0016715:211707-211726 None:intergenic 75.0%
GGTGGCGCCACCGCAGCTGA+CGG - tig0016715:211707-211726 None:intergenic 75.0%
! CGCCACCGCAGCTGACGGCG+TGG - tig0016715:211702-211721 None:intergenic 80.0%
! CGCCACCGCAGCTGACGGCG+TGG - tig0016715:211702-211721 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0016715 gene 211423 213868 211423 ID=Msa1359490;Name=Msa1359490
tig0016715 mRNA 211423 213868 211423 ID=Msa1359490-mRNA-1;Parent=Msa1359490;Name=Msa1359490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=136|1|1|1|1|1|2|256|513
tig0016715 exon 211423 212154 211423 ID=Msa1359490-mRNA-1:exon:11393;Parent=Msa1359490-mRNA-1
tig0016715 exon 212667 213868 212667 ID=Msa1359490-mRNA-1:exon:11394;Parent=Msa1359490-mRNA-1
tig0016715 five_prime_UTR 211423 211558 211423 ID=Msa1359490-mRNA-1:five_prime_utr;Parent=Msa1359490-mRNA-1
tig0016715 CDS 211559 212154 211559 ID=Msa1359490-mRNA-1:cds;Parent=Msa1359490-mRNA-1
tig0016715 CDS 212667 213612 212667 ID=Msa1359490-mRNA-1:cds;Parent=Msa1359490-mRNA-1
tig0016715 three_prime_UTR 213613 213868 213613 ID=Msa1359490-mRNA-1:three_prime_utr;Parent=Msa1359490-mRNA-1
Gene Sequence

>Msa1359490

ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCATTCTCGGCCACCACCACCACCGTTCCACCAAAACACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCTCTCTCCATCGCCTCCCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGTGGCGCCACCTCCCGTTACAATCACCGCCGCCGTAGCACCTTCAACGAATATGACACTGAAGACTTCTCTTCCTCAGCTTCCTCCTTCGACAAACGGCAACAGAATCAAACTTCAAAACCGAATGTGAAATCGGAGAAACTCTCCGATCTTCTGAACATGGCGGAGATGGAGACAGAAGAGGAAGCGAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAAGCTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGTGAAGCTGCGACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTAAGAGGAACACTTTCAATGCTCGGAGCGATTCCACCGTTAGTCGCAATGCTCGATTCAAAAGACGTTGATTCTCAGATCGCTTCTCTCTACGCATTGCTCAATCTTGGAATCGGAAACGATGCAAATAAAGAAGCCATTGTTAAAGTTGGTTCTGTACACAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCGGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCAGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATATAGATAAGAAAAGTAGCAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCAGCCAATGTTCAGTTTATTTTGGAAACTGATTTGGTACCGTTTCTGATAAACTCAATTGGCGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCAGGTAGAAAGGCAATAAGTGCTGTCCCGGATGTGTTTCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGCCAGGAAAAGGTTTCGTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTTCTTGAGTTGTCGCTTATTGGTACTACTTTGACTCAGAAACGGGCGTCGAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAGGTTTCAGGGAACTACAACGGAAATTTAGGTGCAACTGTCTCTGCCCCAATTTGCGGAACTTCATCGTCGTGTGCAAAACCAGATGGAGGAGGAGGAGGAGGAAAAGAGTGTTCGGAAGAAGATGAAGATATGATGAGCGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAATTGAGTTTGCAAAACAACATGAGGAAAATTGTGAAGAGGGCCAACTTGCCTCAAGATATAGTCCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGTTTACCATTCTGA

Protein sequence

>Msa1359490

MANYHRNNVGNLILGHHHHRSTKTPTFSHHFRLWNSLSIASLRRLIFHAVSCGGATSRYNHRRRSTFNEYDTEDFSSSASSFDKRQQNQTSKPNVKSEKLSDLLNMAEMETEEEAKKKEEALEKLKKLVKDLHEEDDSVKRREAATTVRMLAKENLEVRGTLSMLGAIPPLVAMLDSKDVDSQIASLYALLNLGIGNDANKEAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNIDKKSSNQVKQDALRALYNLSIFPANVQFILETDLVPFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRIDKGKQVSGNYNGNLGATVSAPICGTSSSCAKPDGGGGGGKECSEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF*