Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622660 | XP_024631910.1 | 90.598 | 117 | 6 | 2 | 10 | 123 | 1027 | 1141 | 1.29e-52 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622660 | A0A2K3MEG5 | 82.418 | 91 | 16 | 0 | 10 | 100 | 82 | 172 | 1.53e-45 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042770 | Msa0622660 | 0.816144 | 6.433715e-52 | -8.615850e-47 |
| Msa0622630 | Msa0622660 | 0.840097 | 1.067266e-57 | -8.615850e-47 |
| Msa0622660 | Msa0623820 | 0.897041 | 2.064150e-76 | -8.615850e-47 |
| Msa0622660 | Msa0727130 | 0.892951 | 9.876309e-75 | -8.615850e-47 |
| Msa0622660 | Msa0919970 | 0.818584 | 1.815863e-52 | -8.615850e-47 |
| Msa0622660 | Msa1159000 | 0.806774 | 6.985919e-50 | -8.615850e-47 |
| Msa0622660 | Msa1187290 | 0.830108 | 3.535101e-55 | -8.615850e-47 |
| Msa0160620 | Msa0622660 | 0.807310 | 5.380489e-50 | -8.615850e-47 |
| Msa0339790 | Msa0622660 | 0.801043 | 1.084850e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATTACATGTATCATTT+TGG | 0.226865 | 4_2:+75254979 | None:intergenic |
| TGTTTCAATTTCTCTACTTT+GGG | 0.267804 | 4_2:-75254801 | Msa0622660:five_prime_UTR |
| CACCACTTCAATGCATGAAT+TGG | 0.272830 | 4_2:+75254838 | None:intergenic |
| GGTGCTTAAAATTTATTATC+TGG | 0.297194 | 4_2:-75252753 | Msa0622660:three_prime_UTR |
| ATTGGGATAAGAAAGAAAAT+TGG | 0.309564 | 4_2:+75254856 | None:intergenic |
| TTGTTTCAATTTCTCTACTT+TGG | 0.314070 | 4_2:-75254802 | Msa0622660:five_prime_UTR |
| TTGGGATAAGAAAGAAAATT+GGG | 0.319969 | 4_2:+75254857 | None:intergenic |
| ATTAATGGTGCTGCAAAGTT+TGG | 0.320369 | 4_2:-75253342 | Msa0622660:exon |
| GGAAGCATACGGTCCTTTCT+TGG | 0.323111 | 4_2:-75253087 | Msa0622660:CDS |
| GGAAGTCTTGTTGATTTAGT+TGG | 0.335009 | 4_2:-75253119 | Msa0622660:CDS |
| CAGTTAGGACCGAGGCTTCT+TGG | 0.352101 | 4_2:-75253451 | Msa0622660:five_prime_UTR |
| TCAAAGGGTTATGGTGGCTT+TGG | 0.352518 | 4_2:+75255018 | None:intergenic |
| AATTTCTGCGTAGGAATATT+CGG | 0.369204 | 4_2:-75253697 | Msa0622660:intron |
| ATTTGTGTTCCAGATTGTTT+AGG | 0.370232 | 4_2:-75253478 | Msa0622660:intron |
| AAAATACCTTGAAATCCTTT+GGG | 0.373281 | 4_2:+75252786 | None:intergenic |
| TGATGAAGTTCAAAGGGTTA+TGG | 0.383423 | 4_2:+75255009 | None:intergenic |
| GCAAGAACAAGAAGAATAGA+AGG | 0.386139 | 4_2:-75254605 | Msa0622660:five_prime_UTR |
| TTGGCAGAGTTGACAATTCA+AGG | 0.391416 | 4_2:-75253432 | Msa0622660:five_prime_UTR |
| TTGAATTGTGCTTCTCGCCT+TGG | 0.392592 | 4_2:+75253235 | None:intergenic |
| GGTTTCGTGCGGTTGTTTAG+AGG | 0.398949 | 4_2:-75252723 | Msa0622660:three_prime_UTR |
| CCCGTTTCAAATGCACGAAC+AGG | 0.410058 | 4_2:+75253619 | None:intergenic |
| TGGATGAGGTTACCTTTGAA+TGG | 0.410546 | 4_2:-75253067 | Msa0622660:CDS |
| GCCTGTTCGTGCATTTGAAA+CGG | 0.417977 | 4_2:-75253620 | Msa0622660:five_prime_UTR |
| AATTGCTGCGTAGGAATATT+CGG | 0.425916 | 4_2:-75253575 | Msa0622660:intron |
| CCTGTTCGTGCATTTGAAAC+GGG | 0.438499 | 4_2:-75253619 | Msa0622660:five_prime_UTR |
| CTGTAGGTTCGGTTGGGACT+AGG | 0.439250 | 4_2:+75254896 | None:intergenic |
| TGGTTCATCCCCACTTGATA+TGG | 0.445421 | 4_2:-75254545 | Msa0622660:intron |
| TGGTATGGAACTTCTTTCTC+CGG | 0.445848 | 4_2:+75253194 | None:intergenic |
| TCTTACTCCTTTCTATCTCT+CGG | 0.448553 | 4_2:-75255050 | None:intergenic |
| TTTGGGTTAAGATGAAGCTT+AGG | 0.452836 | 4_2:-75254784 | Msa0622660:intron |
| ACCACTTCAATGCATGAATT+GGG | 0.454441 | 4_2:+75254839 | None:intergenic |
| GGATGAGGTTACCTTTGAAT+GGG | 0.455125 | 4_2:-75253066 | Msa0622660:CDS |
| ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 4_2:-75253140 | Msa0622660:CDS |
| AGAGGTAGAGGCAGCGGAAG+AGG | 0.457632 | 4_2:-75252857 | Msa0622660:three_prime_UTR |
| GATTGTTTAGGCATGCAGTT+AGG | 0.458223 | 4_2:-75253466 | Msa0622660:five_prime_UTR |
| AGAATAGAAGGAGAAATTGA+AGG | 0.460014 | 4_2:-75254593 | Msa0622660:five_prime_UTR |
| CAAAGATTGATGAAGTTCAA+AGG | 0.462763 | 4_2:+75255002 | None:intergenic |
| GAAAGAAAATTGGGGAAAGA+AGG | 0.470391 | 4_2:+75254866 | None:intergenic |
| AACAAACCCAAAGGATTTCA+AGG | 0.473412 | 4_2:-75252792 | Msa0622660:three_prime_UTR |
| ATTGTGTGATTGATTCATCT+TGG | 0.474013 | 4_2:+75253174 | None:intergenic |
| AAAGATTGATGAAGTTCAAA+GGG | 0.477967 | 4_2:+75255003 | None:intergenic |
| GTGCGGTTGTTTAGAGGGTG+TGG | 0.481036 | 4_2:-75252717 | Msa0622660:three_prime_UTR |
| AATATCTTTATCCCATTCAA+AGG | 0.483583 | 4_2:+75253055 | None:intergenic |
| GTTTCGTGCGGTTGTTTAGA+GGG | 0.489116 | 4_2:-75252722 | Msa0622660:three_prime_UTR |
| ATACGGTCCTTTCTTGGATG+AGG | 0.503815 | 4_2:-75253081 | Msa0622660:CDS |
| GTGATTGATTCATCTTGGTA+TGG | 0.505565 | 4_2:+75253179 | None:intergenic |
| GTAGGACTGTAGGTTCGGTT+GGG | 0.513758 | 4_2:+75254890 | None:intergenic |
| AATTTATTATCTGGTAGCAT+AGG | 0.515942 | 4_2:-75252744 | Msa0622660:three_prime_UTR |
| GAATAGAAGGAGAAATTGAA+GGG | 0.517096 | 4_2:-75254592 | Msa0622660:five_prime_UTR |
| TGTAGGACTGTAGGTTCGGT+TGG | 0.518008 | 4_2:+75254889 | None:intergenic |
| TCAGAGCTCTTGTTCATCAA+TGG | 0.520698 | 4_2:-75254568 | Msa0622660:five_prime_UTR |
| GGGTTATGGTGGCTTTGGAA+TGG | 0.520808 | 4_2:+75255023 | None:intergenic |
| TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 4_2:-75253108 | Msa0622660:CDS |
| CGAATGTTAGGTAGAGGTAG+AGG | 0.532296 | 4_2:-75252869 | Msa0622660:intron |
| TTAGGTAGAGGTAGAGGCAG+CGG | 0.532621 | 4_2:-75252863 | Msa0622660:intron |
| ATACTTGAATTATTGAGCGT+TGG | 0.537283 | 4_2:-75254632 | Msa0622660:five_prime_UTR |
| AAGGTGTAGGACTGTAGGTT+CGG | 0.544407 | 4_2:+75254885 | None:intergenic |
| ACGTTCTGTAATTGCTGCGT+AGG | 0.545882 | 4_2:-75253584 | Msa0622660:five_prime_UTR |
| TCAACTCTGCCAAGAAGCCT+CGG | 0.549766 | 4_2:+75253442 | None:intergenic |
| TGGATGGCCGAGAGATAGAA+AGG | 0.550376 | 4_2:+75255043 | None:intergenic |
| TATGGTGGCTTTGGAATGGA+TGG | 0.550702 | 4_2:+75255027 | None:intergenic |
| CAATTCATGCATTGAAGTGG+TGG | 0.554056 | 4_2:-75254837 | Msa0622660:five_prime_UTR |
| AACTTTAGAAGATAGTAAGC+CGG | 0.555137 | 4_2:-75253213 | Msa0622660:CDS |
| GAAAGAAGGTGTAGGACTGT+AGG | 0.562934 | 4_2:+75254880 | None:intergenic |
| AAGGTAACCTCATCCAAGAA+AGG | 0.563434 | 4_2:+75253074 | None:intergenic |
| TGGCAGAGTTGACAATTCAA+GGG | 0.574366 | 4_2:-75253431 | Msa0622660:five_prime_UTR |
| TCCCAATTCATGCATTGAAG+TGG | 0.578368 | 4_2:-75254840 | Msa0622660:five_prime_UTR |
| TGAAGTTCAAAGGGTTATGG+TGG | 0.583833 | 4_2:+75255012 | None:intergenic |
| ATTAATTCACATAAGAAATG+AGG | 0.589943 | 4_2:+75254953 | None:intergenic |
| AGTAGAGAAATTGAAACAAG+AGG | 0.594700 | 4_2:+75254806 | None:intergenic |
| GAGCTCTTGTTCATCAATGG+TGG | 0.600072 | 4_2:-75254565 | Msa0622660:five_prime_UTR |
| AGAGAACTCACCATATCAAG+TGG | 0.605853 | 4_2:+75254535 | None:intergenic |
| TGATGAAACATATTCTGACT+AGG | 0.610583 | 4_2:-75252988 | Msa0622660:intron |
| GTTGGCTGTGATTAAGACCA+AGG | 0.613774 | 4_2:-75253252 | Msa0622660:CDS |
| TACTTCACACAGTATCCTGA+AGG | 0.615568 | 4_2:-75253287 | Msa0622660:CDS |
| GGAGAAGTTGAGGAAGCATA+CGG | 0.617796 | 4_2:-75253098 | Msa0622660:CDS |
| TTCTTATGTGAATTAATGTG+TGG | 0.619198 | 4_2:-75254947 | Msa0622660:five_prime_UTR |
| GAGAACTCACCATATCAAGT+GGG | 0.622028 | 4_2:+75254536 | None:intergenic |
| TGGGATAAGAAAGAAAATTG+GGG | 0.635478 | 4_2:+75254858 | None:intergenic |
| CTGGTAGCATAGGTTTCGTG+CGG | 0.636336 | 4_2:-75252734 | Msa0622660:three_prime_UTR |
| GGTTCGGTTGGGACTAGGAG+AGG | 0.638556 | 4_2:+75254901 | None:intergenic |
| ATCTTCTCAAACAAACCCAA+AGG | 0.644202 | 4_2:-75252801 | Msa0622660:three_prime_UTR |
| TAGGCATGCAGTTAGGACCG+AGG | 0.650131 | 4_2:-75253459 | Msa0622660:five_prime_UTR |
| TCATGCATTGAAGTGGTGGA+AGG | 0.653671 | 4_2:-75254833 | Msa0622660:five_prime_UTR |
| AGAACTCACCATATCAAGTG+GGG | 0.690846 | 4_2:+75254537 | None:intergenic |
| AAATTGGGGAAAGAAGGTGT+AGG | 0.709182 | 4_2:+75254872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGATTACATGTATCATTT+TGG | + | chr4_2:75252655-75252674 | None:intergenic | 20.0% |
| !! | ATTAATTCACATAAGAAATG+AGG | + | chr4_2:75252681-75252700 | None:intergenic | 20.0% |
| !! | TCAACTCCTTAATTAATTAA+TGG | - | chr4_2:75252946-75252965 | Msa0622660:intron | 20.0% |
| !! | ATGCAACCATTAATTAATTA+AGG | + | chr4_2:75252955-75252974 | None:intergenic | 20.0% |
| !! | AGATTAATTCATGAAACAAA+TGG | - | chr4_2:75253229-75253248 | Msa0622660:CDS | 20.0% |
| !!! | AAATTTTGTCTATTTTCCAA+TGG | + | chr4_2:75253422-75253441 | None:intergenic | 20.0% |
| !!! | GACAAAAATTAACTTGAAAT+AGG | - | chr4_2:75253613-75253632 | Msa0622660:five_prime_UTR | 20.0% |
| !! | TCAAAATAACTTAAAAGTCT+TGG | + | chr4_2:75253735-75253754 | None:intergenic | 20.0% |
| !!! | CAAGGTATTTTTATGATATA+AGG | - | chr4_2:75254857-75254876 | Msa0622660:five_prime_UTR | 20.0% |
| !!! | ATGTTTTTGACTTTGTTTAA+TGG | - | chr4_2:75255031-75255050 | Msa0622660:five_prime_UTR | 20.0% |
| ! | AAAGATTGATGAAGTTCAAA+GGG | + | chr4_2:75252631-75252650 | None:intergenic | 25.0% |
| ! | TTCTTATGTGAATTAATGTG+TGG | - | chr4_2:75252684-75252703 | Msa0622660:three_prime_UTR | 25.0% |
| ! | TTGGGATAAGAAAGAAAATT+GGG | + | chr4_2:75252777-75252796 | None:intergenic | 25.0% |
| ! | ATTGGGATAAGAAAGAAAAT+TGG | + | chr4_2:75252778-75252797 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCTCTACTT+TGG | - | chr4_2:75252829-75252848 | Msa0622660:three_prime_UTR | 25.0% |
| ! | TGTTTCAATTTCTCTACTTT+GGG | - | chr4_2:75252830-75252849 | Msa0622660:three_prime_UTR | 25.0% |
| ! | TTAATTAAGGAGTTGAAAGT+GGG | + | chr4_2:75252942-75252961 | None:intergenic | 25.0% |
| ! | ATTAATTAAGGAGTTGAAAG+TGG | + | chr4_2:75252943-75252962 | None:intergenic | 25.0% |
| ! | AATTAATTAATGGTTGCATG+TGG | - | chr4_2:75252956-75252975 | Msa0622660:intron | 25.0% |
| !!! | TTAGAGTTGAATTTGTTGTT+TGG | - | chr4_2:75253140-75253159 | Msa0622660:CDS | 25.0% |
| ! | ATTAATCTTGCACATAACAT+GGG | + | chr4_2:75253217-75253236 | None:intergenic | 25.0% |
| ! | AATTAATCTTGCACATAACA+TGG | + | chr4_2:75253218-75253237 | None:intergenic | 25.0% |
| ! | TTTAACGATGATAATCCATT+TGG | + | chr4_2:75253286-75253305 | None:intergenic | 25.0% |
| ! | ATCATCGTTAAAAGTGATTA+TGG | - | chr4_2:75253294-75253313 | Msa0622660:CDS | 25.0% |
| ! | AATGTCAGTTAAAATTCGTA+TGG | - | chr4_2:75253334-75253353 | Msa0622660:CDS | 25.0% |
| ! | GACAAAATTTAACACGAAAT+TGG | - | chr4_2:75253432-75253451 | Msa0622660:five_prime_UTR | 25.0% |
| !! | AATTTTTGTCTTCTTTCTCA+TGG | + | chr4_2:75253603-75253622 | None:intergenic | 25.0% |
| ! | CTACTTGTAAATGTAACTTT+CGG | - | chr4_2:75253682-75253701 | Msa0622660:five_prime_UTR | 25.0% |
| ! | TTTATTACAAATTTCTGCGT+AGG | - | chr4_2:75253925-75253944 | Msa0622660:intron | 25.0% |
| ! | TTGAACATCAAAGGAAAAAA+AGG | + | chr4_2:75254097-75254116 | None:intergenic | 25.0% |
| ! | ACCATTAATGTAAAAATCCA+GGG | + | chr4_2:75254278-75254297 | None:intergenic | 25.0% |
| ! | AATATCTTTATCCCATTCAA+AGG | + | chr4_2:75254579-75254598 | None:intergenic | 25.0% |
| ! | AAAATACCTTGAAATCCTTT+GGG | + | chr4_2:75254848-75254867 | None:intergenic | 25.0% |
| ! | AAAAATACCTTGAAATCCTT+TGG | + | chr4_2:75254849-75254868 | None:intergenic | 25.0% |
| ! | GGTGCTTAAAATTTATTATC+TGG | - | chr4_2:75254878-75254897 | Msa0622660:five_prime_UTR | 25.0% |
| ! | AATTTATTATCTGGTAGCAT+AGG | - | chr4_2:75254887-75254906 | Msa0622660:five_prime_UTR | 25.0% |
| CAAAGATTGATGAAGTTCAA+AGG | + | chr4_2:75252632-75252651 | None:intergenic | 30.0% | |
| TGGGATAAGAAAGAAAATTG+GGG | + | chr4_2:75252776-75252795 | None:intergenic | 30.0% | |
| AGTAGAGAAATTGAAACAAG+AGG | + | chr4_2:75252828-75252847 | None:intergenic | 30.0% | |
| ATACTTGAATTATTGAGCGT+TGG | - | chr4_2:75252999-75253018 | Msa0622660:CDS | 30.0% | |
| AGAATAGAAGGAGAAATTGA+AGG | - | chr4_2:75253038-75253057 | Msa0622660:CDS | 30.0% | |
| GAATAGAAGGAGAAATTGAA+GGG | - | chr4_2:75253039-75253058 | Msa0622660:CDS | 30.0% | |
| !! | AATTTGTTGTTTGGAGGTAA+TGG | - | chr4_2:75253149-75253168 | Msa0622660:CDS | 30.0% |
| !! | ATTTGTTGTTTGGAGGTAAT+GGG | - | chr4_2:75253150-75253169 | Msa0622660:CDS | 30.0% |
| !!! | AAATGGTTTTGAGAATGAGA+CGG | - | chr4_2:75253246-75253265 | Msa0622660:CDS | 30.0% |
| TCGTTAAAAGTGATTATGGA+TGG | - | chr4_2:75253298-75253317 | Msa0622660:CDS | 30.0% | |
| TTGTAGTAGAATTGAACCAT+TGG | - | chr4_2:75253403-75253422 | Msa0622660:five_prime_UTR | 30.0% | |
| ! | ATTTAACACGAAATTGGCTT+TGG | - | chr4_2:75253438-75253457 | Msa0622660:five_prime_UTR | 30.0% |
| TCTATGTTCATACATCACTT+TGG | - | chr4_2:75253564-75253583 | Msa0622660:intron | 30.0% | |
| TGAGTAGTCTAAGAATACAA+AGG | - | chr4_2:75253762-75253781 | Msa0622660:intron | 30.0% | |
| AATTTCTGCGTAGGAATATT+CGG | - | chr4_2:75253934-75253953 | Msa0622660:intron | 30.0% | |
| ! | CAATCTGGAACACAAATAAA+AGG | + | chr4_2:75254150-75254169 | None:intergenic | 30.0% |
| ATTTGTGTTCCAGATTGTTT+AGG | - | chr4_2:75254153-75254172 | Msa0622660:intron | 30.0% | |
| !!! | GTTTTATTTTATACCAACCC+TGG | - | chr4_2:75254258-75254277 | Msa0622660:intron | 30.0% |
| TTAATGTAAAAATCCAGGGT+TGG | + | chr4_2:75254274-75254293 | None:intergenic | 30.0% | |
| ! | ACCCTGGATTTTTACATTAA+TGG | - | chr4_2:75254274-75254293 | Msa0622660:intron | 30.0% |
| CACCATTAATGTAAAAATCC+AGG | + | chr4_2:75254279-75254298 | None:intergenic | 30.0% | |
| !! | GTGTGAAGTATACTTGTTTT+TGG | + | chr4_2:75254334-75254353 | None:intergenic | 30.0% |
| ATCCTGAAGGAAAAAAAGAT+TGG | - | chr4_2:75254357-75254376 | Msa0622660:intron | 30.0% | |
| !!! | AACCAATCTTTTTTTCCTTC+AGG | + | chr4_2:75254362-75254381 | None:intergenic | 30.0% |
| TGAAGGAAAAAAAGATTGGT+TGG | - | chr4_2:75254361-75254380 | Msa0622660:intron | 30.0% | |
| ! | AACTTTAGAAGATAGTAAGC+CGG | - | chr4_2:75254418-75254437 | Msa0622660:intron | 30.0% |
| ! | ATTGTGTGATTGATTCATCT+TGG | + | chr4_2:75254460-75254479 | None:intergenic | 30.0% |
| ATTGCAAATGACAATCTTGA+AGG | - | chr4_2:75254491-75254510 | Msa0622660:intron | 30.0% | |
| ATCATCATCATCATCTTCTT+CGG | + | chr4_2:75254624-75254643 | None:intergenic | 30.0% | |
| TGATGAAACATATTCTGACT+AGG | - | chr4_2:75254643-75254662 | Msa0622660:intron | 30.0% | |
| TAAGTCATGCAAGAATAAGA+GGG | + | chr4_2:75254688-75254707 | None:intergenic | 30.0% | |
| ATAAGTCATGCAAGAATAAG+AGG | + | chr4_2:75254689-75254708 | None:intergenic | 30.0% | |
| TTGTATTGTTCACGAATGTT+AGG | - | chr4_2:75254750-75254769 | Msa0622660:intron | 30.0% | |
| !! | AGCACTTTTTGTTTCAGTTT+TGG | - | chr4_2:75254938-75254957 | Msa0622660:five_prime_UTR | 30.0% |
| !! | CTTTTTGTTTCAGTTTTGGT+TGG | - | chr4_2:75254942-75254961 | Msa0622660:five_prime_UTR | 30.0% |
| TGATGAAGTTCAAAGGGTTA+TGG | + | chr4_2:75252625-75252644 | None:intergenic | 35.0% | |
| GAAAGAAAATTGGGGAAAGA+AGG | + | chr4_2:75252768-75252787 | None:intergenic | 35.0% | |
| ACCACTTCAATGCATGAATT+GGG | + | chr4_2:75252795-75252814 | None:intergenic | 35.0% | |
| ! | TTTGGGTTAAGATGAAGCTT+AGG | - | chr4_2:75252847-75252866 | Msa0622660:three_prime_UTR | 35.0% |
| GCAAGAACAAGAAGAATAGA+AGG | - | chr4_2:75253026-75253045 | Msa0622660:CDS | 35.0% | |
| !! | GAGTTGAATTTGTTGTTTGG+AGG | - | chr4_2:75253143-75253162 | Msa0622660:CDS | 35.0% |
| GAGACATGTTTGAGAAAAGT+AGG | - | chr4_2:75253176-75253195 | Msa0622660:CDS | 35.0% | |
| CTACAAAATGAATCACGTAC+AGG | + | chr4_2:75253389-75253408 | None:intergenic | 35.0% | |
| !! | ACTTGAAATAGGCTTTGAGA+TGG | - | chr4_2:75253624-75253643 | Msa0622660:five_prime_UTR | 35.0% |
| AATTGCTGCGTAGGAATATT+CGG | - | chr4_2:75254056-75254075 | Msa0622660:intron | 35.0% | |
| ! | GAATATTCGGTAAAGTACTC+AGG | - | chr4_2:75253947-75253966 | Msa0622660:intron | 35.0% |
| ! | AAGCACAAGTTGAACATCAA+AGG | + | chr4_2:75254106-75254125 | None:intergenic | 35.0% |
| !! | ATTAATGGTGCTGCAAAGTT+TGG | - | chr4_2:75254289-75254308 | Msa0622660:intron | 35.0% |
| ! | GTGATTGATTCATCTTGGTA+TGG | + | chr4_2:75254455-75254474 | None:intergenic | 35.0% |
| !! | GGAAGTCTTGTTGATTTAGT+TGG | - | chr4_2:75254512-75254531 | Msa0622660:intron | 35.0% |
| TGATTTAGTTGGAGAAGTTG+AGG | - | chr4_2:75254523-75254542 | Msa0622660:intron | 35.0% | |
| ATCTTCTCAAACAAACCCAA+AGG | - | chr4_2:75254830-75254849 | Msa0622660:five_prime_UTR | 35.0% | |
| AACAAACCCAAAGGATTTCA+AGG | - | chr4_2:75254839-75254858 | Msa0622660:five_prime_UTR | 35.0% | |
| TGAAGTTCAAAGGGTTATGG+TGG | + | chr4_2:75252622-75252641 | None:intergenic | 40.0% | |
| ! | AAATTGGGGAAAGAAGGTGT+AGG | + | chr4_2:75252762-75252781 | None:intergenic | 40.0% |
| TCCCAATTCATGCATTGAAG+TGG | - | chr4_2:75252791-75252810 | Msa0622660:three_prime_UTR | 40.0% | |
| CACCACTTCAATGCATGAAT+TGG | + | chr4_2:75252796-75252815 | None:intergenic | 40.0% | |
| CAATTCATGCATTGAAGTGG+TGG | - | chr4_2:75252794-75252813 | Msa0622660:three_prime_UTR | 40.0% | |
| TCAGAGCTCTTGTTCATCAA+TGG | - | chr4_2:75253063-75253082 | Msa0622660:CDS | 40.0% | |
| AGAACTCACCATATCAAGTG+GGG | + | chr4_2:75253097-75253116 | None:intergenic | 40.0% | |
| GAGAACTCACCATATCAAGT+GGG | + | chr4_2:75253098-75253117 | None:intergenic | 40.0% | |
| AGAGAACTCACCATATCAAG+TGG | + | chr4_2:75253099-75253118 | None:intergenic | 40.0% | |
| GTGAAGCAATGACATCCAAA+TGG | - | chr4_2:75253268-75253287 | Msa0622660:CDS | 40.0% | |
| AATTCGTATGGACCTGTTGT+CGG | - | chr4_2:75253346-75253365 | Msa0622660:exon | 40.0% | |
| ! | ATGACAGTTTTACCGACAAC+AGG | + | chr4_2:75253361-75253380 | None:intergenic | 40.0% |
| TCGGCAAGCAAATTCGAATT+TGG | - | chr4_2:75253701-75253720 | Msa0622660:intron | 40.0% | |
| CGGCAAGCAAATTCGAATTT+GGG | - | chr4_2:75253702-75253721 | Msa0622660:intron | 40.0% | |
| AACTGCATGCCTAAACAATC+TGG | + | chr4_2:75254165-75254184 | None:intergenic | 40.0% | |
| GATTGTTTAGGCATGCAGTT+AGG | - | chr4_2:75254165-75254184 | Msa0622660:intron | 40.0% | |
| TTGGCAGAGTTGACAATTCA+AGG | - | chr4_2:75254199-75254218 | Msa0622660:intron | 40.0% | |
| TGGCAGAGTTGACAATTCAA+GGG | - | chr4_2:75254200-75254219 | Msa0622660:intron | 40.0% | |
| TACTTCACACAGTATCCTGA+AGG | - | chr4_2:75254344-75254363 | Msa0622660:intron | 40.0% | |
| TGGTATGGAACTTCTTTCTC+CGG | + | chr4_2:75254440-75254459 | None:intergenic | 40.0% | |
| AAGGTAACCTCATCCAAGAA+AGG | + | chr4_2:75254560-75254579 | None:intergenic | 40.0% | |
| TGGATGAGGTTACCTTTGAA+TGG | - | chr4_2:75254564-75254583 | Msa0622660:five_prime_UTR | 40.0% | |
| GGATGAGGTTACCTTTGAAT+GGG | - | chr4_2:75254565-75254584 | Msa0622660:five_prime_UTR | 40.0% | |
| TGTTCACGAATGTTAGGTAG+AGG | - | chr4_2:75254756-75254775 | Msa0622660:intron | 40.0% | |
| !! | TATGGTGGCTTTGGAATGGA+TGG | + | chr4_2:75252607-75252626 | None:intergenic | 45.0% |
| TCAAAGGGTTATGGTGGCTT+TGG | + | chr4_2:75252616-75252635 | None:intergenic | 45.0% | |
| AAGGTGTAGGACTGTAGGTT+CGG | + | chr4_2:75252749-75252768 | None:intergenic | 45.0% | |
| ! | GAAAGAAGGTGTAGGACTGT+AGG | + | chr4_2:75252754-75252773 | None:intergenic | 45.0% |
| ! | TCATGCATTGAAGTGGTGGA+AGG | - | chr4_2:75252798-75252817 | Msa0622660:three_prime_UTR | 45.0% |
| ! | AGGTTTCGGTGCAAGAAGAA+TGG | + | chr4_2:75252906-75252925 | None:intergenic | 45.0% |
| !! | GCTGAACATGGGTTAGGTTT+CGG | + | chr4_2:75252920-75252939 | None:intergenic | 45.0% |
| !! | GTTGAAAGTGGGCTGAACAT+GGG | + | chr4_2:75252931-75252950 | None:intergenic | 45.0% |
| !! | AGTTGAAAGTGGGCTGAACA+TGG | + | chr4_2:75252932-75252951 | None:intergenic | 45.0% |
| ! | GCATGTGGATTTTCTTGCTC+AGG | - | chr4_2:75252971-75252990 | Msa0622660:intron | 45.0% |
| GAGCTCTTGTTCATCAATGG+TGG | - | chr4_2:75253066-75253085 | Msa0622660:CDS | 45.0% | |
| TGGTTCATCCCCACTTGATA+TGG | - | chr4_2:75253086-75253105 | Msa0622660:CDS | 45.0% | |
| GCCTGTTCGTGCATTTGAAA+CGG | - | chr4_2:75254011-75254030 | Msa0622660:intron | 45.0% | |
| ! | CCTGTTCGTGCATTTGAAAC+GGG | - | chr4_2:75254012-75254031 | Msa0622660:intron | 45.0% |
| ACGTTCTGTAATTGCTGCGT+AGG | - | chr4_2:75254047-75254066 | Msa0622660:intron | 45.0% | |
| GTTGGCTGTGATTAAGACCA+AGG | - | chr4_2:75254379-75254398 | Msa0622660:intron | 45.0% | |
| TTGAATTGTGCTTCTCGCCT+TGG | + | chr4_2:75254399-75254418 | None:intergenic | 45.0% | |
| ! | GGAGAAGTTGAGGAAGCATA+CGG | - | chr4_2:75254533-75254552 | Msa0622660:intron | 45.0% |
| ATACGGTCCTTTCTTGGATG+AGG | - | chr4_2:75254550-75254569 | Msa0622660:five_prime_UTR | 45.0% | |
| CGAATGTTAGGTAGAGGTAG+AGG | - | chr4_2:75254762-75254781 | Msa0622660:intron | 45.0% | |
| GTTTCGTGCGGTTGTTTAGA+GGG | - | chr4_2:75254909-75254928 | Msa0622660:five_prime_UTR | 45.0% | |
| !! | GGGTTATGGTGGCTTTGGAA+TGG | + | chr4_2:75252611-75252630 | None:intergenic | 50.0% |
| ! | GTAGGACTGTAGGTTCGGTT+GGG | + | chr4_2:75252744-75252763 | None:intergenic | 50.0% |
| ! | TGTAGGACTGTAGGTTCGGT+TGG | + | chr4_2:75252745-75252764 | None:intergenic | 50.0% |
| !! | AAGTGGGCTGAACATGGGTT+AGG | + | chr4_2:75252926-75252945 | None:intergenic | 50.0% |
| CCCGTTTCAAATGCACGAAC+AGG | + | chr4_2:75254015-75254034 | None:intergenic | 50.0% | |
| TCAACTCTGCCAAGAAGCCT+CGG | + | chr4_2:75254192-75254211 | None:intergenic | 50.0% | |
| ! | GGAAGCATACGGTCCTTTCT+TGG | - | chr4_2:75254544-75254563 | Msa0622660:intron | 50.0% |
| TTAGGTAGAGGTAGAGGCAG+CGG | - | chr4_2:75254768-75254787 | Msa0622660:intron | 50.0% | |
| CTGGTAGCATAGGTTTCGTG+CGG | - | chr4_2:75254897-75254916 | Msa0622660:five_prime_UTR | 50.0% | |
| GGTTTCGTGCGGTTGTTTAG+AGG | - | chr4_2:75254908-75254927 | Msa0622660:five_prime_UTR | 50.0% | |
| ! | CTGTAGGTTCGGTTGGGACT+AGG | + | chr4_2:75252738-75252757 | None:intergenic | 55.0% |
| TAGGCATGCAGTTAGGACCG+AGG | - | chr4_2:75254172-75254191 | Msa0622660:intron | 55.0% | |
| CAGTTAGGACCGAGGCTTCT+TGG | - | chr4_2:75254180-75254199 | Msa0622660:intron | 55.0% | |
| GTGCGGTTGTTTAGAGGGTG+TGG | - | chr4_2:75254914-75254933 | Msa0622660:five_prime_UTR | 55.0% | |
| ! | GGTTCGGTTGGGACTAGGAG+AGG | + | chr4_2:75252733-75252752 | None:intergenic | 60.0% |
| AGAGGTAGAGGCAGCGGAAG+AGG | - | chr4_2:75254774-75254793 | Msa0622660:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75252591 | 75255062 | 75252591 | ID=Msa0622660;Name=Msa0622660 |
| chr4_2 | mRNA | 75252591 | 75255062 | 75252591 | ID=Msa0622660-mRNA-1;Parent=Msa0622660;Name=Msa0622660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=651|1|1|1|0.25|0.2|5|291|123 |
| chr4_2 | exon | 75252591 | 75252881 | 75252591 | ID=Msa0622660-mRNA-1:exon:22832;Parent=Msa0622660-mRNA-1 |
| chr4_2 | exon | 75252989 | 75253487 | 75252989 | ID=Msa0622660-mRNA-1:exon:22831;Parent=Msa0622660-mRNA-1 |
| chr4_2 | exon | 75253576 | 75253706 | 75253576 | ID=Msa0622660-mRNA-1:exon:22830;Parent=Msa0622660-mRNA-1 |
| chr4_2 | exon | 75254546 | 75254660 | 75254546 | ID=Msa0622660-mRNA-1:exon:22829;Parent=Msa0622660-mRNA-1 |
| chr4_2 | exon | 75254785 | 75255062 | 75254785 | ID=Msa0622660-mRNA-1:exon:22828;Parent=Msa0622660-mRNA-1 |
| chr4_2 | five_prime_UTR | 75254785 | 75255062 | 75254785 | ID=Msa0622660-mRNA-1:five_prime_utr;Parent=Msa0622660-mRNA-1 |
| chr4_2 | five_prime_UTR | 75254546 | 75254660 | 75254546 | ID=Msa0622660-mRNA-1:five_prime_utr;Parent=Msa0622660-mRNA-1 |
| chr4_2 | five_prime_UTR | 75253576 | 75253706 | 75253576 | ID=Msa0622660-mRNA-1:five_prime_utr;Parent=Msa0622660-mRNA-1 |
| chr4_2 | five_prime_UTR | 75253361 | 75253487 | 75253361 | ID=Msa0622660-mRNA-1:five_prime_utr;Parent=Msa0622660-mRNA-1 |
| chr4_2 | CDS | 75252989 | 75253360 | 75252989 | ID=Msa0622660-mRNA-1:cds;Parent=Msa0622660-mRNA-1 |
| chr4_2 | three_prime_UTR | 75252591 | 75252881 | 75252591 | ID=Msa0622660-mRNA-1:three_prime_utr;Parent=Msa0622660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
