Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339790 | XP_024631910.1 | 86.957 | 92 | 12 | 0 | 9 | 100 | 1029 | 1120 | 1.41e-44 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042770 | Msa0339790 | 0.810579 | 1.074339e-50 | -8.615850e-47 |
| Msa0160620 | Msa0339790 | 0.822442 | 2.363435e-53 | -8.615850e-47 |
| Msa0339790 | Msa0547760 | 0.805130 | 1.548352e-49 | -8.615850e-47 |
| Msa0339790 | Msa0622630 | 0.834230 | 3.379370e-56 | -8.615850e-47 |
| Msa0339790 | Msa0622660 | 0.801043 | 1.084850e-48 | -8.615850e-47 |
| Msa0339790 | Msa0623820 | 0.834998 | 2.166416e-56 | -8.615850e-47 |
| Msa0339790 | Msa0727130 | 0.836276 | 1.029170e-56 | -8.615850e-47 |
| Msa0339790 | Msa0919970 | 0.823773 | 1.156595e-53 | -8.615850e-47 |
| Msa0339790 | Msa1070950 | 0.815413 | 9.363812e-52 | -8.615850e-47 |
| Msa0339790 | Msa1107800 | 0.806307 | 8.767489e-50 | -8.615850e-47 |
| Msa0339790 | Msa1187290 | 0.853742 | 1.953771e-61 | -8.615850e-47 |
| Msa0339790 | Msa1280130 | 0.800563 | 1.359313e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGCTTAAAATTTATTATC+TGG | 0.297194 | 2_4:-61071509 | Msa0339790:three_prime_UTR |
| GGTTTCGTGCGGTTGTTTAA+AGG | 0.313859 | 2_4:-61071479 | Msa0339790:three_prime_UTR |
| GGAAGCATACGGTCCTTTCT+TGG | 0.323111 | 2_4:-61071840 | Msa0339790:CDS |
| GGAAGTCTTGTTGATTTAGT+TGG | 0.335009 | 2_4:-61071872 | Msa0339790:CDS |
| GATGACTATCGATGGCCTTC+AGG | 0.357255 | 2_4:-61073952 | Msa0339790:intron |
| TTGAATTGTGCTTCTCGCCT+TGG | 0.392592 | 2_4:+61071988 | None:intergenic |
| GTTTCGTGCGGTTGTTTAAA+GGG | 0.393142 | 2_4:-61071478 | Msa0339790:three_prime_UTR |
| AAAATGCCTTGAAATCCTTT+GGG | 0.406289 | 2_4:+61071542 | None:intergenic |
| TGGTATGGAACTTCTTTCTC+CGG | 0.448678 | 2_4:+61071947 | None:intergenic |
| TCTGCAAGCTAAGACATTCA+TGG | 0.455164 | 2_4:+61073973 | None:intergenic |
| ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 2_4:-61071893 | Msa0339790:CDS |
| AGAGGTAGAGGCAGCGGAAG+AGG | 0.457632 | 2_4:-61071613 | Msa0339790:CDS |
| GTGCGGTTGTTTAAAGGGTG+TGG | 0.469034 | 2_4:-61071473 | Msa0339790:three_prime_UTR |
| ATTGTGTGATTGATTCATCT+TGG | 0.474013 | 2_4:+61071927 | None:intergenic |
| AACAAACCCAAAGGATTTCA+AGG | 0.477434 | 2_4:-61071548 | Msa0339790:three_prime_UTR |
| AACTTTAGAAGATAGTAAAC+CGG | 0.477531 | 2_4:-61071966 | Msa0339790:CDS |
| ATACGGTCCTTTCTTGGATG+AGG | 0.503815 | 2_4:-61071834 | Msa0339790:intron |
| GTGATTGATTCATCTTGGTA+TGG | 0.505565 | 2_4:+61071932 | None:intergenic |
| AATTTATTATCTGGTAGCAT+AGG | 0.515942 | 2_4:-61071500 | Msa0339790:three_prime_UTR |
| TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 2_4:-61071861 | Msa0339790:CDS |
| CGAATGTTAGGTAGAGGTAG+AGG | 0.532296 | 2_4:-61071625 | Msa0339790:intron |
| TTAGGTAGAGGTAGAGGCAG+CGG | 0.532621 | 2_4:-61071619 | Msa0339790:intron |
| AAGGTAACCTCATCCAAGAA+AGG | 0.563434 | 2_4:+61071827 | None:intergenic |
| GTTGGCTGTGATTAAGACCA+AGG | 0.613774 | 2_4:-61072005 | Msa0339790:CDS |
| GGAGAAGTTGAGGAAGCATA+CGG | 0.617796 | 2_4:-61071851 | Msa0339790:CDS |
| TACTTCACACAGAATCCTGA+AGG | 0.625675 | 2_4:-61072040 | Msa0339790:CDS |
| CTGGTAGCATAGGTTTCGTG+CGG | 0.636336 | 2_4:-61071490 | Msa0339790:three_prime_UTR |
| ATCTTCTCAAACAAACCCAA+AGG | 0.644202 | 2_4:-61071557 | Msa0339790:three_prime_UTR |
| AGCTTGCAGATGACTATCGA+TGG | 0.645714 | 2_4:-61073960 | Msa0339790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTTTACTTAAAAATCA+CGG | + | chr2_4:61071852-61071871 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTAAAAATTCGTA+TGG | - | chr2_4:61071855-61071874 | Msa0339790:CDS | 15.0% |
| !! | TGTTACAAATTATTAATGTT+TGG | - | chr2_4:61073058-61073077 | Msa0339790:intron | 15.0% |
| !! | GTTACAAATTATTAATGTTT+GGG | - | chr2_4:61073059-61073078 | Msa0339790:intron | 15.0% |
| !! | ATGCTTTATAACATTTATTT+AGG | + | chr2_4:61073128-61073147 | None:intergenic | 15.0% |
| !! | AAGAATTAGAAACTTAACTT+TGG | - | chr2_4:61071536-61071555 | Msa0339790:three_prime_UTR | 20.0% |
| !! | AGAATTAGAAACTTAACTTT+GGG | - | chr2_4:61071537-61071556 | Msa0339790:three_prime_UTR | 20.0% |
| !! | AAGTTAATGTTGTCTATTAT+TGG | - | chr2_4:61071752-61071771 | Msa0339790:intron | 20.0% |
| !!! | TGAAAAAAAAAAAGTGCTTA+TGG | - | chr2_4:61072532-61072551 | Msa0339790:intron | 20.0% |
| ! | TTTAGATGTTATGCACATTT+GGG | - | chr2_4:61071485-61071504 | Msa0339790:three_prime_UTR | 25.0% |
| !!! | AATAACTGTTTTTACATGTG+TGG | - | chr2_4:61071657-61071676 | Msa0339790:intron | 25.0% |
| !!! | CTATAAGTTGTTTTAAGAGT+TGG | - | chr2_4:61071723-61071742 | Msa0339790:intron | 25.0% |
| ! | AAGCAATTTATATTCAGTTC+TGG | + | chr2_4:61072121-61072140 | None:intergenic | 25.0% |
| ! | TTTCAAAATATTAGCTGTGT+CGG | - | chr2_4:61072313-61072332 | Msa0339790:intron | 25.0% |
| !!! | AATAATGACTTTTGACTCTT+TGG | - | chr2_4:61072764-61072783 | Msa0339790:intron | 25.0% |
| !!! | AATCTAAGTTTTTTGAATGC+TGG | + | chr2_4:61072879-61072898 | None:intergenic | 25.0% |
| !! | CAAAAAACTTAGATTTTGCA+TGG | - | chr2_4:61072884-61072903 | Msa0339790:intron | 25.0% |
| ! | TATTGGAGATAATAAGTTTG+GGG | + | chr2_4:61072961-61072980 | None:intergenic | 25.0% |
| ! | GTATTGGAGATAATAAGTTT+GGG | + | chr2_4:61072962-61072981 | None:intergenic | 25.0% |
| ! | ACCATTAATGTAAAAATCCA+GGG | + | chr2_4:61073304-61073323 | None:intergenic | 25.0% |
| !! | AACTTTAGAAGATAGTAAAC+CGG | - | chr2_4:61073444-61073463 | Msa0339790:intron | 25.0% |
| ! | AATATCTTTATCCCATTCAA+AGG | + | chr2_4:61073605-61073624 | None:intergenic | 25.0% |
| !!! | CAAGGCATTTTTATGATATA+AGG | - | chr2_4:61073880-61073899 | Msa0339790:intron | 25.0% |
| ! | GGTGCTTAAAATTTATTATC+TGG | - | chr2_4:61073901-61073920 | Msa0339790:intron | 25.0% |
| ! | AATTTATTATCTGGTAGCAT+AGG | - | chr2_4:61073910-61073929 | Msa0339790:intron | 25.0% |
| TAACATCTAAACATACCTGA+AGG | + | chr2_4:61071476-61071495 | None:intergenic | 30.0% | |
| GTTTAGATGTTATGCACATT+TGG | - | chr2_4:61071484-61071503 | Msa0339790:three_prime_UTR | 30.0% | |
| AGAAACTTAACTTTGGGTAA+AGG | - | chr2_4:61071543-61071562 | Msa0339790:three_prime_UTR | 30.0% | |
| CATAACAACTTACTCACATA+CGG | + | chr2_4:61071578-61071597 | None:intergenic | 30.0% | |
| TGTTATGTATGTTCTTGTGA+TGG | - | chr2_4:61071591-61071610 | Msa0339790:exon | 30.0% | |
| TATCAGGAATTATATGCTTG+AGG | - | chr2_4:61071617-61071636 | Msa0339790:CDS | 30.0% | |
| ATCAGGAATTATATGCTTGA+GGG | - | chr2_4:61071618-61071637 | Msa0339790:CDS | 30.0% | |
| ! | TTTTTACATGTGTGGATAAG+TGG | - | chr2_4:61071665-61071684 | Msa0339790:intron | 30.0% |
| ! | TTTTACATGTGTGGATAAGT+GGG | - | chr2_4:61071666-61071685 | Msa0339790:intron | 30.0% |
| AAATTCGTATGGCATATAAG+TGG | - | chr2_4:61071866-61071885 | Msa0339790:CDS | 30.0% | |
| GATATACGGTTCATATGATT+CGG | - | chr2_4:61071975-61071994 | Msa0339790:CDS | 30.0% | |
| GTTGAATTGCGAATTTAAGT+TGG | - | chr2_4:61072085-61072104 | Msa0339790:intron | 30.0% | |
| TGATAGACTTAGTAAGAGTT+TGG | - | chr2_4:61072140-61072159 | Msa0339790:intron | 30.0% | |
| GATAGACTTAGTAAGAGTTT+GGG | - | chr2_4:61072141-61072160 | Msa0339790:intron | 30.0% | |
| TCCAATGTAATTACAAGTGT+CGG | + | chr2_4:61072282-61072301 | None:intergenic | 30.0% | |
| AGATAATAAGTTTGGGGAAA+GGG | + | chr2_4:61072955-61072974 | None:intergenic | 30.0% | |
| ! | GGTATTGGAGATAATAAGTT+TGG | + | chr2_4:61072963-61072982 | None:intergenic | 30.0% |
| TAAAAGGACTCATATGGTAT+TGG | + | chr2_4:61072978-61072997 | None:intergenic | 30.0% | |
| ! | ATACCATATGAGTCCTTTTA+AGG | - | chr2_4:61072978-61072997 | Msa0339790:intron | 30.0% |
| ! | TACCATATGAGTCCTTTTAA+GGG | - | chr2_4:61072979-61072998 | Msa0339790:intron | 30.0% |
| ATTACACTAACTGACATGTA+TGG | - | chr2_4:61073083-61073102 | Msa0339790:intron | 30.0% | |
| TTACACTAACTGACATGTAT+GGG | - | chr2_4:61073084-61073103 | Msa0339790:intron | 30.0% | |
| GTGATTAGAGAATACATATC+AGG | - | chr2_4:61073183-61073202 | Msa0339790:intron | 30.0% | |
| !!! | GTTTTATTTTATACCAACCC+TGG | - | chr2_4:61073284-61073303 | Msa0339790:intron | 30.0% |
| TTAATGTAAAAATCCAGGGT+TGG | + | chr2_4:61073300-61073319 | None:intergenic | 30.0% | |
| ! | ACCCTGGATTTTTACATTAA+TGG | - | chr2_4:61073300-61073319 | Msa0339790:intron | 30.0% |
| CACCATTAATGTAAAAATCC+AGG | + | chr2_4:61073305-61073324 | None:intergenic | 30.0% | |
| !! | GTGTGAAGTATACTTGTTTT+TGG | + | chr2_4:61073360-61073379 | None:intergenic | 30.0% |
| ATCCTGAAGGAAAAAAAGAT+TGG | - | chr2_4:61073383-61073402 | Msa0339790:intron | 30.0% | |
| !!! | AACCAATCTTTTTTTCCTTC+AGG | + | chr2_4:61073388-61073407 | None:intergenic | 30.0% |
| TGAAGGAAAAAAAGATTGGT+TGG | - | chr2_4:61073387-61073406 | Msa0339790:intron | 30.0% | |
| ! | ATTGTGTGATTGATTCATCT+TGG | + | chr2_4:61073486-61073505 | None:intergenic | 30.0% |
| ATTGCAAATGACAATCTTGA+AGG | - | chr2_4:61073517-61073536 | Msa0339790:intron | 30.0% | |
| ATCATCATCATCATCTTCTT+CGG | + | chr2_4:61073650-61073669 | None:intergenic | 30.0% | |
| TGATGAAACATATTCTGACT+AGG | - | chr2_4:61073666-61073685 | Msa0339790:intron | 30.0% | |
| TTGTATTGTTCACGAATGTT+AGG | - | chr2_4:61073773-61073792 | Msa0339790:intron | 30.0% | |
| AAAATGCCTTGAAATCCTTT+GGG | + | chr2_4:61073871-61073890 | None:intergenic | 30.0% | |
| AAAAATGCCTTGAAATCCTT+TGG | + | chr2_4:61073872-61073891 | None:intergenic | 30.0% | |
| !! | AGCACTTTTTGTTTCAGTTT+TGG | - | chr2_4:61073961-61073980 | Msa0339790:intron | 30.0% |
| !! | CTTTTTGTTTCAGTTTTGGT+TGG | - | chr2_4:61073965-61073984 | Msa0339790:intron | 30.0% |
| !! | TTGGGTTTGTTATACAGATG+TGG | - | chr2_4:61071503-61071522 | Msa0339790:three_prime_UTR | 35.0% |
| !! | TGGGTTTGTTATACAGATGT+GGG | - | chr2_4:61071504-61071523 | Msa0339790:three_prime_UTR | 35.0% |
| ACTTTGGGTAAAGGATTTGA+AGG | - | chr2_4:61071552-61071571 | Msa0339790:three_prime_UTR | 35.0% | |
| GTTCTTGTGATGGTTATATC+AGG | - | chr2_4:61071601-61071620 | Msa0339790:exon | 35.0% | |
| TCAGGAATTATATGCTTGAG+GGG | - | chr2_4:61071619-61071638 | Msa0339790:intron | 35.0% | |
| TTTACATGTGTGGATAAGTG+GGG | - | chr2_4:61071667-61071686 | Msa0339790:intron | 35.0% | |
| ATGTTGTCTATTATTGGTGC+TGG | - | chr2_4:61071758-61071777 | Msa0339790:intron | 35.0% | |
| ! | TGTTGTCTATTATTGGTGCT+GGG | - | chr2_4:61071759-61071778 | Msa0339790:intron | 35.0% |
| TTGGGTAATTGTTGGATTTC+TGG | - | chr2_4:61071925-61071944 | Msa0339790:CDS | 35.0% | |
| ACATTCAATTCCCTTCAGTT+TGG | - | chr2_4:61071953-61071972 | Msa0339790:CDS | 35.0% | |
| TTCCCTTCAGTTTGGATATA+CGG | - | chr2_4:61071961-61071980 | Msa0339790:CDS | 35.0% | |
| AACCGTATATCCAAACTGAA+GGG | + | chr2_4:61071966-61071985 | None:intergenic | 35.0% | |
| CAGAAAACACGTTTGAACTT+TGG | - | chr2_4:61072012-61072031 | Msa0339790:CDS | 35.0% | |
| !! | GAATTGCGAATTTAAGTTGG+TGG | - | chr2_4:61072088-61072107 | Msa0339790:intron | 35.0% |
| GTTGAAGCTTGAGTCAAAAT+CGG | - | chr2_4:61072163-61072182 | Msa0339790:intron | 35.0% | |
| ACCGACACTTGTAATTACAT+TGG | - | chr2_4:61072278-61072297 | Msa0339790:intron | 35.0% | |
| ! | TCATTGCAAATAAGCCGTTT+TGG | - | chr2_4:61072384-61072403 | Msa0339790:intron | 35.0% |
| !! | CATTGCAAATAAGCCGTTTT+GGG | - | chr2_4:61072385-61072404 | Msa0339790:intron | 35.0% |
| AAGCATAAGTGATGAGATTG+TGG | - | chr2_4:61072446-61072465 | Msa0339790:intron | 35.0% | |
| TAGCTTATTGCTTCTGCTTT+CGG | + | chr2_4:61072497-61072516 | None:intergenic | 35.0% | |
| AAAGCAGAAGCAATAAGCTA+TGG | - | chr2_4:61072497-61072516 | Msa0339790:intron | 35.0% | |
| !! | AAAAAAGTGCTTATGGAGCA+TGG | - | chr2_4:61072539-61072558 | Msa0339790:intron | 35.0% |
| GGTGGGAAAAACTATCTATT+AGG | + | chr2_4:61072622-61072641 | None:intergenic | 35.0% | |
| ATTAACATCATGCATCACGT+GGG | + | chr2_4:61072715-61072734 | None:intergenic | 35.0% | |
| AATTAACATCATGCATCACG+TGG | + | chr2_4:61072716-61072735 | None:intergenic | 35.0% | |
| !! | GACTTTTGACTCTTTGGTAT+TGG | - | chr2_4:61072770-61072789 | Msa0339790:intron | 35.0% |
| GAGATAATAAGTTTGGGGAA+AGG | + | chr2_4:61072956-61072975 | None:intergenic | 35.0% | |
| ATCCTTGATTCACCCTTAAA+AGG | + | chr2_4:61072994-61073013 | None:intergenic | 35.0% | |
| TTTAAGGGTGAATCAAGGAT+AGG | - | chr2_4:61072994-61073013 | Msa0339790:intron | 35.0% | |
| AGAATACATATCAGGCAGTT+AGG | - | chr2_4:61073191-61073210 | Msa0339790:intron | 35.0% | |
| !! | ATTAATGGTGCTGCAAAGTT+TGG | - | chr2_4:61073315-61073334 | Msa0339790:intron | 35.0% |
| ! | GTGATTGATTCATCTTGGTA+TGG | + | chr2_4:61073481-61073500 | None:intergenic | 35.0% |
| !! | GGAAGTCTTGTTGATTTAGT+TGG | - | chr2_4:61073538-61073557 | Msa0339790:intron | 35.0% |
| TGATTTAGTTGGAGAAGTTG+AGG | - | chr2_4:61073549-61073568 | Msa0339790:intron | 35.0% | |
| ATCTTCTCAAACAAACCCAA+AGG | - | chr2_4:61073853-61073872 | Msa0339790:intron | 35.0% | |
| AACAAACCCAAAGGATTTCA+AGG | - | chr2_4:61073862-61073881 | Msa0339790:intron | 35.0% | |
| !! | GGGTTTGTTATACAGATGTG+GGG | - | chr2_4:61071505-61071524 | Msa0339790:three_prime_UTR | 40.0% |
| TGATAGGGTGAAGCTGTTTA+TGG | - | chr2_4:61071788-61071807 | Msa0339790:intron | 40.0% | |
| ! | TTGTTGTGTTGCTCAGACTT+GGG | - | chr2_4:61071907-61071926 | Msa0339790:CDS | 40.0% |
| GAACCGTATATCCAAACTGA+AGG | + | chr2_4:61071967-61071986 | None:intergenic | 40.0% | |
| ATCCTGCTGAAAGTCACTTA+CGG | - | chr2_4:61072037-61072056 | Msa0339790:CDS | 40.0% | |
| ! | TGAAAGTCACTTACGGGTTT+TGG | - | chr2_4:61072044-61072063 | Msa0339790:CDS | 40.0% |
| !! | CGGGTTTTGGCATAATTTTG+TGG | - | chr2_4:61072057-61072076 | Msa0339790:CDS | 40.0% |
| TTTGCAATGAAGCACGGATA+CGG | + | chr2_4:61072374-61072393 | None:intergenic | 40.0% | |
| GGCTTATTTGCAATGAAGCA+CGG | + | chr2_4:61072380-61072399 | None:intergenic | 40.0% | |
| ! | TCCTGACAGTTTTCCCAAAA+CGG | + | chr2_4:61072401-61072420 | None:intergenic | 40.0% |
| ! | AGATAGTTTTTCCCACCTTG+AGG | - | chr2_4:61072625-61072644 | Msa0339790:intron | 40.0% |
| ACACAAAAGAACCTCAAGGT+GGG | + | chr2_4:61072639-61072658 | None:intergenic | 40.0% | |
| TCACACACAAAAGAACCTCA+AGG | + | chr2_4:61072643-61072662 | None:intergenic | 40.0% | |
| ! | TGCAGATTCAGTTTTCAGCA+TGG | + | chr2_4:61072839-61072858 | None:intergenic | 40.0% |
| GAAAACTGAATCTGCACACA+TGG | - | chr2_4:61072843-61072862 | Msa0339790:intron | 40.0% | |
| CACCCTTAAAAGGACTCATA+TGG | + | chr2_4:61072984-61073003 | None:intergenic | 40.0% | |
| !! | GTCCTTTTAAGGGTGAATCA+AGG | - | chr2_4:61072989-61073008 | Msa0339790:intron | 40.0% |
| TACTTCACACAGAATCCTGA+AGG | - | chr2_4:61073370-61073389 | Msa0339790:intron | 40.0% | |
| TGGTATGGAACTTCTTTCTC+CGG | + | chr2_4:61073466-61073485 | None:intergenic | 40.0% | |
| AAGGTAACCTCATCCAAGAA+AGG | + | chr2_4:61073586-61073605 | None:intergenic | 40.0% | |
| TGGATGAGGTTACCTTTGAA+TGG | - | chr2_4:61073590-61073609 | Msa0339790:intron | 40.0% | |
| GGATGAGGTTACCTTTGAAT+GGG | - | chr2_4:61073591-61073610 | Msa0339790:intron | 40.0% | |
| TGTTCACGAATGTTAGGTAG+AGG | - | chr2_4:61073779-61073798 | Msa0339790:intron | 40.0% | |
| GTTTCGTGCGGTTGTTTAAA+GGG | - | chr2_4:61073932-61073951 | Msa0339790:intron | 40.0% | |
| AGCTTGCAGATGACTATCGA+TGG | - | chr2_4:61071450-61071469 | Msa0339790:three_prime_UTR | 45.0% | |
| ! | GTTGTTGTGTTGCTCAGACT+TGG | - | chr2_4:61071906-61071925 | Msa0339790:CDS | 45.0% |
| GCTCAGACTTGGGTAATTGT+TGG | - | chr2_4:61071917-61071936 | Msa0339790:CDS | 45.0% | |
| TCCTGCTGAAAGTCACTTAC+GGG | - | chr2_4:61072038-61072057 | Msa0339790:CDS | 45.0% | |
| TATGAAGCACAGACACTCCT+TGG | - | chr2_4:61072204-61072223 | Msa0339790:intron | 45.0% | |
| GATGCTTGAGCTGATTGAAG+TGG | - | chr2_4:61072575-61072594 | Msa0339790:intron | 45.0% | |
| TGAAGTGGCCAGAGATGTAT+TGG | - | chr2_4:61072590-61072609 | Msa0339790:intron | 45.0% | |
| GGAACTCACCAATACATCTC+TGG | + | chr2_4:61072601-61072620 | None:intergenic | 45.0% | |
| CACACAAAAGAACCTCAAGG+TGG | + | chr2_4:61072640-61072659 | None:intergenic | 45.0% | |
| GTTGGCTGTGATTAAGACCA+AGG | - | chr2_4:61073405-61073424 | Msa0339790:intron | 45.0% | |
| TTGAATTGTGCTTCTCGCCT+TGG | + | chr2_4:61073425-61073444 | None:intergenic | 45.0% | |
| ! | GGAGAAGTTGAGGAAGCATA+CGG | - | chr2_4:61073559-61073578 | Msa0339790:intron | 45.0% |
| ATACGGTCCTTTCTTGGATG+AGG | - | chr2_4:61073576-61073595 | Msa0339790:intron | 45.0% | |
| CGAATGTTAGGTAGAGGTAG+AGG | - | chr2_4:61073785-61073804 | Msa0339790:intron | 45.0% | |
| GGTTTCGTGCGGTTGTTTAA+AGG | - | chr2_4:61073931-61073950 | Msa0339790:intron | 45.0% | |
| GATGACTATCGATGGCCTTC+AGG | - | chr2_4:61071458-61071477 | Msa0339790:three_prime_UTR | 50.0% | |
| TGCTTGAGGGGTTGTATGAG+TGG | - | chr2_4:61071631-61071650 | Msa0339790:intron | 50.0% | |
| TGGATAAGTGGGGTAGAGCT+TGG | - | chr2_4:61071677-61071696 | Msa0339790:intron | 50.0% | |
| ! | TGGTGCTGGGTTTGTGTGAT+AGG | - | chr2_4:61071772-61071791 | Msa0339790:intron | 50.0% |
| ! | GGTGCTGGGTTTGTGTGATA+GGG | - | chr2_4:61071773-61071792 | Msa0339790:intron | 50.0% |
| ACCCGTAAGTGACTTTCAGC+AGG | + | chr2_4:61072042-61072061 | None:intergenic | 50.0% | |
| GCACAGACACTCCTTGGATT+AGG | - | chr2_4:61072210-61072229 | Msa0339790:intron | 50.0% | |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | + | chr2_4:61072271-61072290 | None:intergenic | 50.0% |
| ATGAAGCACGGATACGGACA+CGG | + | chr2_4:61072368-61072387 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTGGGAAAACTGTC+AGG | - | chr2_4:61072397-61072416 | Msa0339790:intron | 50.0% |
| ATATCAGGCAGTTAGGACCG+AGG | - | chr2_4:61073198-61073217 | Msa0339790:intron | 50.0% | |
| TTGGCAGGGTTGACGATTCA+GGG | - | chr2_4:61073225-61073244 | Msa0339790:intron | 50.0% | |
| ! | GGAAGCATACGGTCCTTTCT+TGG | - | chr2_4:61073570-61073589 | Msa0339790:intron | 50.0% |
| TTAGGTAGAGGTAGAGGCAG+CGG | - | chr2_4:61073791-61073810 | Msa0339790:intron | 50.0% | |
| CTGGTAGCATAGGTTTCGTG+CGG | - | chr2_4:61073920-61073939 | Msa0339790:intron | 50.0% | |
| GTGCGGTTGTTTAAAGGGTG+TGG | - | chr2_4:61073937-61073956 | Msa0339790:intron | 50.0% | |
| ! | TCCTTGGATTAGGCGTGTCG+CGG | - | chr2_4:61072220-61072239 | Msa0339790:intron | 55.0% |
| GTCAGTGTCTGTGTCGTGTC+CGG | - | chr2_4:61072339-61072358 | Msa0339790:intron | 55.0% | |
| CAGTTAGGACCGAGGCTTCT+TGG | - | chr2_4:61073206-61073225 | Msa0339790:intron | 55.0% | |
| TCAACCCTGCCAAGAAGCCT+CGG | + | chr2_4:61073218-61073237 | None:intergenic | 55.0% | |
| CTTGGCAGGGTTGACGATTC+AGG | - | chr2_4:61073224-61073243 | Msa0339790:intron | 55.0% | |
| TGGCAGGGTTGACGATTCAG+GGG | - | chr2_4:61073226-61073245 | Msa0339790:intron | 55.0% | |
| ACCGCGACACGCCTAATCCA+AGG | + | chr2_4:61072224-61072243 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCGCGGTGT+CGG | - | chr2_4:61072226-61072245 | Msa0339790:intron | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | + | chr2_4:61072265-61072284 | None:intergenic | 60.0% |
| ACGGATACGGACACGGACAC+CGG | + | chr2_4:61072361-61072380 | None:intergenic | 60.0% | |
| TAGGACCGAGGCTTCTTGGC+AGG | - | chr2_4:61073210-61073229 | Msa0339790:intron | 60.0% | |
| AGGACCGAGGCTTCTTGGCA+GGG | - | chr2_4:61073211-61073230 | Msa0339790:intron | 60.0% | |
| AGAGGTAGAGGCAGCGGAAG+AGG | - | chr2_4:61073797-61073816 | Msa0339790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61071439 | 61073993 | 61071439 | ID=Msa0339790;Name=Msa0339790 |
| chr2_4 | mRNA | 61071439 | 61073993 | 61071439 | ID=Msa0339790-mRNA-1;Parent=Msa0339790;Name=Msa0339790-mRNA-1;_AED=0.21;_eAED=0.57;_QI=0|0|0.25|0.5|0.66|0.5|4|163|101 |
| chr2_4 | exon | 61071439 | 61071637 | 61071439 | ID=Msa0339790-mRNA-1:exon:19089;Parent=Msa0339790-mRNA-1 |
| chr2_4 | exon | 61071835 | 61072077 | 61071835 | ID=Msa0339790-mRNA-1:exon:19088;Parent=Msa0339790-mRNA-1 |
| chr2_4 | exon | 61073953 | 61073973 | 61073953 | ID=Msa0339790-mRNA-1:exon:19087;Parent=Msa0339790-mRNA-1 |
| chr2_4 | exon | 61073988 | 61073993 | 61073988 | ID=Msa0339790-mRNA-1:exon:19086;Parent=Msa0339790-mRNA-1 |
| chr2_4 | CDS | 61073988 | 61073993 | 61073988 | ID=Msa0339790-mRNA-1:cds;Parent=Msa0339790-mRNA-1 |
| chr2_4 | CDS | 61073953 | 61073973 | 61073953 | ID=Msa0339790-mRNA-1:cds;Parent=Msa0339790-mRNA-1 |
| chr2_4 | CDS | 61071835 | 61072077 | 61071835 | ID=Msa0339790-mRNA-1:cds;Parent=Msa0339790-mRNA-1 |
| chr2_4 | CDS | 61071602 | 61071637 | 61071602 | ID=Msa0339790-mRNA-1:cds;Parent=Msa0339790-mRNA-1 |
| chr2_4 | three_prime_UTR | 61071439 | 61071601 | 61071439 | ID=Msa0339790-mRNA-1:three_prime_utr;Parent=Msa0339790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
