AlfalfaGEDB | Msa0160620

M. sativa cultivar zhongmu-4 / Msa0160620

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160620	XP_024631910.1	88.060	67	4	2	1	65	1077	1141	4.36e-21	95.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160620	A0A2K3MEG5	80.952	42	8	0	1	42	132	173	1.20e-13	71.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0042770	Msa0160620	0.820239	7.618540e-53	-8.615850e-47
Msa0160620	Msa0339790	0.822442	2.363435e-53	-8.615850e-47
Msa0160620	Msa0622660	0.807310	5.380489e-50	-8.615850e-47
Msa0160620	Msa0623820	0.836760	7.748821e-57	-8.615850e-47
Msa0160620	Msa0629890	0.806498	7.990407e-50	-8.615850e-47
Msa0160620	Msa0727130	0.836024	1.191941e-56	-8.615850e-47
Msa0160620	Msa0885280	0.810522	1.105769e-50	-8.615850e-47
Msa0160620	Msa0902980	0.805078	1.588111e-49	-8.615850e-47
Msa0160620	Msa0961420	-0.804031	2.625560e-49	-8.615850e-47
Msa0160620	Msa1136090	0.804283	2.326475e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 96 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTTGAAATCCTTT+GGG	0.373281	1_4:-33688676	None:intergenic
AAAGATTGATGAAGTTCAAA+GGG	0.506733	1_4:-33686464	None:intergenic
AAATTGGGGAAAGAAGGTGT+AGG	0.709182	1_4:-33686595	None:intergenic
AACAAACCCAAAGGATTTCA+AGG	0.473412	1_4:+33688670	Msa0160620:three_prime_UTR
AACTTTAGAAGATAGCAAGC+CGG	0.591008	1_4:+33688254	Msa0160620:five_prime_UTR
AAGCTCTTGTTCATCAATGG+TGG	0.595522	1_4:+33686902	Msa0160620:five_prime_UTR
AAGGTAACCTCATCCAAGAA+AGG	0.563434	1_4:-33688385	None:intergenic
AAGGTGTAGGACTGTAGGTT+CGG	0.544407	1_4:-33686582	None:intergenic
AATATCTTTATCCCATTCAA+AGG	0.483583	1_4:-33688404	None:intergenic
AATGGTTGTTTGTTATGTTG+CGG	0.583109	1_4:+33688880	Msa0160620:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGATTGATGAAGTTCAA+AGG	-	chr1_4:33686468-33686487	None:intergenic	30.0%
TGGGATAAGAAAGAAAATTG+GGG	-	chr1_4:33686612-33686631	None:intergenic	30.0%
AGTAGAGAAATTGAAACAAG+AGG	-	chr1_4:33686664-33686683	None:intergenic	30.0%
ATACTTGAATTATTGAGCGT+TGG	+	chr1_4:33686835-33686854	Msa0160620:five_prime_UTR	30.0%
AGAATAGAAGGAGAAATTGA+AGG	+	chr1_4:33686874-33686893	Msa0160620:five_prime_UTR	30.0%
GAATAGAAGGAGAAATTGAA+GGG	+	chr1_4:33686875-33686894	Msa0160620:five_prime_UTR	30.0%
TCGTTAAAAGTGATTATGGA+TGG	+	chr1_4:33687134-33687153	Msa0160620:intron	30.0%
ATTTAACACGAAATTGCCTT+TGG	+	chr1_4:33687275-33687294	Msa0160620:intron	30.0%
ACGAAATTAAGTTCTTCCAA+AGG	-	chr1_4:33687294-33687313	None:intergenic	30.0%
TCTATGTTCATACATCACTT+TGG	+	chr1_4:33687401-33687420	Msa0160620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	33686396	33689024	33686396	ID=Msa0160620;Name=Msa0160620
chr1_4	mRNA	33686396	33689024	33686396	ID=Msa0160620-mRNA-1;Parent=Msa0160620;Name=Msa0160620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=851\|1\|1\|1\|0\|0\|5\|422\|65
chr1_4	exon	33686396	33686704	33686396	ID=Msa0160620-mRNA-1:exon:10439;Parent=Msa0160620-mRNA-1
chr1_4	exon	33686829	33686943	33686829	ID=Msa0160620-mRNA-1:exon:10440;Parent=Msa0160620-mRNA-1
chr1_4	exon	33687783	33687913	33687783	ID=Msa0160620-mRNA-1:exon:10441;Parent=Msa0160620-mRNA-1
chr1_4	exon	33688002	33688495	33688002	ID=Msa0160620-mRNA-1:exon:10442;Parent=Msa0160620-mRNA-1
chr1_4	exon	33688603	33689024	33688603	ID=Msa0160620-mRNA-1:exon:10443;Parent=Msa0160620-mRNA-1
chr1_4	five_prime_UTR	33686396	33686704	33686396	ID=Msa0160620-mRNA-1:five_prime_utr;Parent=Msa0160620-mRNA-1
chr1_4	five_prime_UTR	33686829	33686943	33686829	ID=Msa0160620-mRNA-1:five_prime_utr;Parent=Msa0160620-mRNA-1
chr1_4	five_prime_UTR	33687783	33687913	33687783	ID=Msa0160620-mRNA-1:five_prime_utr;Parent=Msa0160620-mRNA-1
chr1_4	five_prime_UTR	33688002	33688297	33688002	ID=Msa0160620-mRNA-1:five_prime_utr;Parent=Msa0160620-mRNA-1
chr1_4	CDS	33688298	33688495	33688298	ID=Msa0160620-mRNA-1:cds;Parent=Msa0160620-mRNA-1
chr1_4	three_prime_UTR	33688603	33689024	33688603	ID=Msa0160620-mRNA-1:three_prime_utr;Parent=Msa0160620-mRNA-1

Gene Sequence	>Msa0160620 ATGAATCAATCACACGTGACAATTGCAAATGACAATCTTGAAGGAAGTCTTGTTGATTTAGTTGGAGAAGTTGAGGAAGCATACGGTCCTTTCTTGGATGAGGTTACCTTTGAATGGGATAAAGATATTGAAGTAGAAGTAGAAGACAGTGCCGAAGAAGATGATGATGATGATGATGATGAAACCTATTCTGACTAG
Protein sequence	>Msa0160620 MNQSHVTIANDNLEGSLVDLVGEVEEAYGPFLDEVTFEWDKDIEVEVEDSAEEDDDDDDDETYSD*