Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629400 | XP_003604587.1 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629400 | sp|O49169|EF1A_MANES | 94.395 | 446 | 25 | 0 | 1 | 446 | 1 | 446 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629400 | G7JLV1 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032040 | Msa0629400 | -0.809058 | 2.283125e-50 | -8.615850e-47 |
| Msa0626890 | Msa0629400 | -0.809427 | 1.902920e-50 | -8.615850e-47 |
| Msa0629400 | Msa0659130 | -0.800703 | 1.272613e-48 | -8.615850e-47 |
| Msa0629400 | Msa0665010 | -0.811427 | 7.041122e-51 | -8.615850e-47 |
| Msa0629400 | Msa0705610 | -0.800593 | 1.339882e-48 | -8.615850e-47 |
| Msa0629400 | Msa1385940 | -0.806195 | 9.256263e-50 | -8.615850e-47 |
| Msa0331830 | Msa0629400 | -0.805262 | 1.453510e-49 | -8.615850e-47 |
| Msa0587060 | Msa0629400 | -0.809292 | 2.033903e-50 | -8.615850e-47 |
| Msa0589440 | Msa0629400 | 0.960583 | 1.011778e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629400 | MtrunA17_Chr4g0005781 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
| Msa0629400 | MtrunA17_Chr1g0200071 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 891 |
| Msa0629400 | MtrunA17_Chr1g0200091 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 891 |
| Msa0629400 | MtrunA17_Chr1g0200121 | 96.205 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 0.0 | 890 |
| Msa0629400 | MtrunA17_Chr6g0458111 | 96.083 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 0.0 | 874 |
| Msa0629400 | MtrunA17_Chr6g0458091 | 96.083 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 0.0 | 874 |
| Msa0629400 | MtrunA17_Chr1g0150331 | 88.248 | 451 | 23 | 3 | 1 | 447 | 1 | 425 | 0.0 | 800 |
| Msa0629400 | MtrunA17_Chr1g0193591 | 82.258 | 434 | 77 | 0 | 1 | 434 | 1 | 434 | 0.0 | 743 |
| Msa0629400 | MtrunA17_Chr1g0204031 | 80.963 | 436 | 78 | 3 | 1 | 436 | 1 | 431 | 0.0 | 731 |
| Msa0629400 | MtrunA17_Chr1g0156421 | 78.802 | 434 | 92 | 0 | 1 | 434 | 1 | 434 | 0.0 | 726 |
| Msa0629400 | MtrunA17_Chr8g0340771 | 79.065 | 449 | 91 | 2 | 1 | 446 | 1 | 449 | 0.0 | 717 |
| Msa0629400 | MtrunA17_Chr5g0415391 | 72.475 | 396 | 109 | 0 | 39 | 434 | 1 | 396 | 0.0 | 595 |
| Msa0629400 | MtrunA17_Chr1g0196251 | 69.231 | 403 | 96 | 2 | 4 | 405 | 5 | 380 | 0.0 | 574 |
| Msa0629400 | MtrunA17_Chr8g0336511 | 78.287 | 327 | 70 | 1 | 1 | 326 | 66 | 392 | 0.0 | 543 |
| Msa0629400 | MtrunA17_Chr2g0319341 | 74.924 | 327 | 80 | 1 | 102 | 426 | 1 | 327 | 0.0 | 518 |
| Msa0629400 | MtrunA17_Chr2g0298371 | 68.923 | 325 | 82 | 2 | 102 | 424 | 1 | 308 | 7.84e-163 | 461 |
| Msa0629400 | MtrunA17_Chr8g0340371 | 69.710 | 241 | 70 | 2 | 1 | 240 | 1 | 239 | 2.10e-118 | 345 |
| Msa0629400 | MtrunA17_Chr1g0210931 | 61.074 | 298 | 61 | 4 | 155 | 446 | 1 | 249 | 8.19e-114 | 335 |
| Msa0629400 | MtrunA17_Chr2g0318291 | 71.239 | 226 | 60 | 3 | 1 | 223 | 1 | 224 | 5.35e-112 | 328 |
| Msa0629400 | MtrunA17_Chr6g0483121 | 38.173 | 427 | 256 | 5 | 5 | 426 | 89 | 512 | 1.09e-98 | 305 |
| Msa0629400 | MtrunA17_Chr8g0392641 | 37.500 | 432 | 260 | 6 | 4 | 429 | 143 | 570 | 2.84e-93 | 293 |
| Msa0629400 | MtrunA17_Chr1g0204041 | 86.452 | 155 | 21 | 0 | 1 | 155 | 1 | 155 | 1.09e-90 | 272 |
| Msa0629400 | MtrunA17_Chr8g0380091 | 36.000 | 425 | 264 | 5 | 7 | 426 | 275 | 696 | 1.34e-90 | 289 |
| Msa0629400 | MtrunA17_Chr1g0200111 | 74.576 | 177 | 35 | 1 | 264 | 430 | 1 | 177 | 3.22e-86 | 261 |
| Msa0629400 | MtrunA17_Chr2g0318281 | 65.672 | 201 | 63 | 1 | 243 | 443 | 5 | 199 | 1.88e-84 | 258 |
| Msa0629400 | MtrunA17_Chr1g0156411 | 81.429 | 140 | 26 | 0 | 6 | 145 | 10 | 149 | 8.67e-79 | 241 |
| Msa0629400 | MtrunA17_Chr8g0340361 | 61.957 | 184 | 54 | 2 | 264 | 432 | 1 | 183 | 9.06e-68 | 214 |
| Msa0629400 | MtrunA17_Chr4g0026961 | 54.124 | 194 | 73 | 4 | 195 | 385 | 32 | 212 | 6.84e-59 | 192 |
| Msa0629400 | MtrunA17_Chr4g0026961 | 76.190 | 42 | 10 | 0 | 1 | 42 | 1 | 42 | 6.43e-13 | 67.8 |
| Msa0629400 | MtrunA17_Chr2g0298381 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 6.12e-48 | 159 |
| Msa0629400 | MtrunA17_Chr8g0341021 | 76.471 | 102 | 24 | 0 | 3 | 104 | 4 | 105 | 1.16e-47 | 159 |
| Msa0629400 | MtrunA17_Chr7g0259481 | 30.137 | 438 | 246 | 14 | 3 | 429 | 59 | 447 | 5.24e-45 | 162 |
| Msa0629400 | MtrunA17_Chr3g0116821 | 29.730 | 444 | 251 | 15 | 3 | 429 | 88 | 487 | 8.78e-40 | 149 |
| Msa0629400 | MtrunA17_Chr1g0211481 | 79.747 | 79 | 16 | 0 | 5 | 83 | 4 | 82 | 3.42e-36 | 129 |
| Msa0629400 | MtrunA17_Chr2g0319351 | 82.192 | 73 | 13 | 0 | 5 | 77 | 5 | 77 | 3.79e-35 | 125 |
| Msa0629400 | MtrunA17_Chr1g0200101 | 87.692 | 65 | 8 | 0 | 172 | 236 | 49 | 113 | 1.38e-34 | 125 |
| Msa0629400 | MtrunA17_Chr1g0200101 | 73.469 | 49 | 13 | 0 | 21 | 69 | 2 | 50 | 8.34e-17 | 76.3 |
| Msa0629400 | MtrunA17_Chr2g0287231 | 32.389 | 247 | 135 | 6 | 1 | 244 | 10 | 227 | 4.53e-31 | 119 |
| Msa0629400 | MtrunA17_Chr8g0341041 | 35.047 | 214 | 76 | 5 | 213 | 426 | 2 | 152 | 7.31e-29 | 111 |
| Msa0629400 | MtrunA17_Chr7g0261801 | 68.182 | 66 | 18 | 1 | 155 | 220 | 1 | 63 | 7.90e-24 | 94.7 |
| Msa0629400 | MtrunA17_Chr3g0130991 | 26.471 | 272 | 143 | 9 | 9 | 272 | 85 | 307 | 4.52e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629400 | AT1G07920.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07940.4 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07940.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07940.2 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07940.3 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT5G60390.3 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT5G60390.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT5G60390.2 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07930.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
| Msa0629400 | AT1G07930.2 | 98.039 | 255 | 5 | 0 | 1 | 255 | 1 | 255 | 0.0 | 528 |
| Msa0629400 | AT1G07930.2 | 86.207 | 116 | 16 | 0 | 331 | 446 | 254 | 369 | 1.70e-64 | 212 |
| Msa0629400 | AT1G18070.1 | 37.176 | 425 | 259 | 5 | 5 | 424 | 99 | 520 | 2.88e-95 | 297 |
| Msa0629400 | AT1G18070.2 | 37.176 | 425 | 259 | 5 | 5 | 424 | 99 | 520 | 2.88e-95 | 297 |
| Msa0629400 | AT1G18070.3 | 36.468 | 436 | 258 | 6 | 5 | 424 | 99 | 531 | 3.34e-92 | 289 |
| Msa0629400 | AT5G10630.1 | 35.529 | 425 | 266 | 5 | 7 | 426 | 239 | 660 | 7.86e-91 | 289 |
| Msa0629400 | AT5G10630.5 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 8.04e-91 | 289 |
| Msa0629400 | AT5G10630.2 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 8.04e-91 | 289 |
| Msa0629400 | AT5G10630.3 | 35.529 | 425 | 266 | 5 | 7 | 426 | 310 | 731 | 2.95e-90 | 290 |
| Msa0629400 | AT5G10630.4 | 35.529 | 425 | 266 | 5 | 7 | 426 | 315 | 736 | 3.88e-90 | 289 |
| Msa0629400 | AT1G35550.1 | 75.962 | 104 | 25 | 0 | 335 | 438 | 1 | 104 | 2.39e-51 | 169 |
| Msa0629400 | AT4G20360.1 | 30.575 | 435 | 253 | 10 | 3 | 426 | 75 | 471 | 3.06e-44 | 161 |
| Msa0629400 | AT4G20360.2 | 30.575 | 435 | 253 | 10 | 3 | 426 | 75 | 471 | 3.06e-44 | 161 |
| Msa0629400 | AT4G02930.1 | 29.841 | 439 | 247 | 15 | 3 | 429 | 63 | 452 | 4.52e-43 | 157 |
| Msa0629400 | AT2G31060.3 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 4.34e-12 | 68.6 |
| Msa0629400 | AT5G39900.1 | 25.839 | 298 | 158 | 8 | 4 | 288 | 64 | 311 | 6.58e-12 | 68.2 |
| Msa0629400 | AT5G08650.2 | 26.518 | 313 | 172 | 13 | 9 | 311 | 88 | 352 | 1.17e-11 | 67.4 |
| Msa0629400 | AT5G08650.1 | 26.518 | 313 | 172 | 13 | 9 | 311 | 88 | 352 | 1.24e-11 | 67.4 |
| Msa0629400 | AT2G31060.2 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 5.58e-11 | 65.1 |
Find 155 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCACGGTTCATTTCTTCT+TGG | 0.216911 | 4_3:+10262266 | None:intergenic |
| GCTCTCCTTGCTTTCACTCT+TGG | 0.289982 | 4_3:-10263288 | Msa0629400:CDS |
| TGTGATGTTTAAATCTTTGC+AGG | 0.305075 | 4_3:-10261940 | Msa0629400:three_prime_UTR |
| ATCTCCATTCTTCAGGAACT+TGG | 0.311336 | 4_3:+10262461 | None:intergenic |
| GTCTACAAGATTGGAGGAAT+TGG | 0.315206 | 4_3:-10262876 | Msa0629400:CDS |
| AAGTTAGCAGCCTCCTTGGC+TGG | 0.316454 | 4_3:+10262636 | None:intergenic |
| ACTTGCTGCTTGTAAAATTC+AGG | 0.324391 | 4_3:+10262024 | None:intergenic |
| CACATTAACATTGTTGTCAT+TGG | 0.329838 | 4_3:-10263678 | Msa0629400:CDS |
| TTCATTAAGAACATGATTAC+TGG | 0.336870 | 4_3:-10263405 | Msa0629400:CDS |
| ATATTTGTGTGTTTATTCCT+TGG | 0.348874 | 4_3:-10261965 | Msa0629400:three_prime_UTR |
| AGAATGAGAGTGGAGTAAAC+AGG | 0.349142 | 4_3:+10264958 | None:intergenic |
| TCTCTCACTGAGGCACTTCC+CGG | 0.352595 | 4_3:-10262741 | Msa0629400:CDS |
| TACCAGCATCTCCATTCTTC+AGG | 0.357413 | 4_3:+10262454 | None:intergenic |
| CTCCTTGGCTGGGTCATCCT+TGG | 0.371796 | 4_3:+10262647 | None:intergenic |
| TCATTCTCTTCCTTGCTGCT+AGG | 0.372496 | 4_3:-10264942 | Msa0629400:five_prime_UTR |
| GCAAAAGTCACCACCATTCC+AGG | 0.373840 | 4_3:+10262813 | None:intergenic |
| ACTAAGATTGACAGGCGTTC+TGG | 0.379305 | 4_3:-10262504 | Msa0629400:CDS |
| AGAGATTGATTTACCTTTGA+AGG | 0.383102 | 4_3:+10264907 | None:intergenic |
| TGCGTCAAACTGTGGCTGTT+GGG | 0.385555 | 4_3:-10262347 | Msa0629400:CDS |
| GTCATTGGCCATGTCGACTC+TGG | 0.395247 | 4_3:-10263663 | Msa0629400:CDS |
| CACCACCATTCCAGGTTTCA+TGG | 0.400023 | 4_3:+10262821 | None:intergenic |
| ATTCCATTCGTTCCCATCTC+TGG | 0.404373 | 4_3:-10263035 | Msa0629400:CDS |
| ATCTCATTGCCCAGAATGTC+AGG | 0.419436 | 4_3:-10261892 | Msa0629400:three_prime_UTR |
| ATACCTGCTCTTGGAATACT+TGG | 0.419677 | 4_3:+10263118 | None:intergenic |
| AAGGACAATGGGTAAGGAAA+AGG | 0.424225 | 4_3:-10263703 | Msa0629400:exon |
| ATGAATCACCCTGGCCAGAT+TGG | 0.425183 | 4_3:-10262594 | Msa0629400:CDS |
| TTCACGGGTCTGACCATCCT+TGG | 0.425447 | 4_3:+10263314 | None:intergenic |
| CTCATCATTGACTCCACTAC+TGG | 0.425797 | 4_3:-10263357 | Msa0629400:CDS |
| ATAGCCAACCTTCTTCATAT+AGG | 0.426065 | 4_3:+10263070 | None:intergenic |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 4_3:+10263419 | None:intergenic |
| AATTTCATCATACCTGCTCT+TGG | 0.430266 | 4_3:+10263109 | None:intergenic |
| GGCTTGTCTGATGGCCTCTT+AGG | 0.432559 | 4_3:+10262921 | None:intergenic |
| CACCCTGGCCAGATTGGAAA+TGG | 0.432985 | 4_3:-10262588 | Msa0629400:CDS |
| GCCCCTCCGACTACCACTTC+AGG | 0.433104 | 4_3:-10262901 | Msa0629400:CDS |
| GAGGTGTGGCAGTCAAGCAC+AGG | 0.434332 | 4_3:+10262558 | None:intergenic |
| CATTCTCTTCCTTGCTGCTA+GGG | 0.439255 | 4_3:-10264941 | Msa0629400:five_prime_UTR |
| GGGCATAGCCATTTCCAATC+TGG | 0.448022 | 4_3:+10262580 | None:intergenic |
| AGCGTTCATTCAAGTATGCT+TGG | 0.450783 | 4_3:-10263545 | Msa0629400:CDS |
| CTTCAGGATGTCTACAAGAT+TGG | 0.458119 | 4_3:-10262885 | Msa0629400:CDS |
| TTAGTTATCTTAACAGTGCC+AGG | 0.458448 | 4_3:+10262297 | None:intergenic |
| GCGTTCATTCAAGTATGCTT+GGG | 0.461276 | 4_3:-10263544 | Msa0629400:CDS |
| AGTCTCAACAACCATGGGCT+TGG | 0.462350 | 4_3:+10262413 | None:intergenic |
| CTCAACAACCATGGGCTTGG+TGG | 0.464097 | 4_3:+10262416 | None:intergenic |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 4_3:+10263420 | None:intergenic |
| TAGCCATTTCCAATCTGGCC+AGG | 0.474048 | 4_3:+10262585 | None:intergenic |
| ATCAAATCAATGAGCCTAAG+AGG | 0.476814 | 4_3:-10262935 | Msa0629400:CDS |
| TGTGAAGTTAGCAGCCTCCT+TGG | 0.480074 | 4_3:+10262632 | None:intergenic |
| TACAAATCTTGACTGGTACA+AGG | 0.490199 | 4_3:-10262982 | Msa0629400:CDS |
| GAGCCCAAGTTCCTGAAGAA+TGG | 0.491587 | 4_3:-10262465 | Msa0629400:CDS |
| AGTCGGAGGGGCTTGTCTGA+TGG | 0.496444 | 4_3:+10262912 | None:intergenic |
| ATCTCCCTCAAAACCAGAGA+TGG | 0.496573 | 4_3:+10263022 | None:intergenic |
| GATTGACAGGCGTTCTGGTA+AGG | 0.497183 | 4_3:-10262499 | Msa0629400:CDS |
| CATCAAGGGTGTGGAGAAGA+AGG | 0.499167 | 4_3:-10262322 | Msa0629400:CDS |
| AGCTTGTTACTAAGATTGAC+AGG | 0.504274 | 4_3:-10262512 | Msa0629400:CDS |
| TGGGTCATCCTTGGTGTTTG+AGG | 0.504620 | 4_3:+10262656 | None:intergenic |
| TGTGGCTGTTGGGGTCATCA+AGG | 0.507111 | 4_3:-10262337 | Msa0629400:CDS |
| CTTGGAATACTTGGGTGTAG+TGG | 0.514389 | 4_3:+10263127 | None:intergenic |
| TGAGAACAGCACAATCAGCT+TGG | 0.516820 | 4_3:+10263376 | None:intergenic |
| GAGAACAGCACAATCAGCTT+GGG | 0.517298 | 4_3:+10263377 | None:intergenic |
| ACTTCAGTTTGCAGTCCAGT+TGG | 0.517541 | 4_3:+10262789 | None:intergenic |
| GAATGAGAGTGGAGTAAACA+GGG | 0.517732 | 4_3:+10264959 | None:intergenic |
| CAAGAGCCTCAAGAAGTGTT+GGG | 0.518886 | 4_3:+10262958 | None:intergenic |
| ATTAAATCCCACATTGTCAC+CGG | 0.519224 | 4_3:+10262722 | None:intergenic |
| TGTTAAGAATGTTTCTGTCA+AGG | 0.521267 | 4_3:-10262700 | Msa0629400:CDS |
| CAGGATGTCTACAAGATTGG+AGG | 0.523217 | 4_3:-10262882 | Msa0629400:CDS |
| TCTCCATTCTTCAGGAACTT+GGG | 0.527363 | 4_3:+10262462 | None:intergenic |
| TTGCTTTCACTCTTGGTGTG+AGG | 0.528420 | 4_3:-10263281 | Msa0629400:CDS |
| TTCCTGAAGAATGGAGATGC+TGG | 0.528428 | 4_3:-10262456 | Msa0629400:CDS |
| AGTTTCATCCTATATGAAGA+AGG | 0.530606 | 4_3:-10263078 | Msa0629400:CDS |
| TCAAGAGCCTCAAGAAGTGT+TGG | 0.532468 | 4_3:+10262957 | None:intergenic |
| CTCAAGGCTGAGCGTGAAAG+AGG | 0.533500 | 4_3:-10263510 | Msa0629400:CDS |
| AGTTAGCAGCCTCCTTGGCT+GGG | 0.535132 | 4_3:+10262637 | None:intergenic |
| TCATTGGCCATGTCGACTCT+GGG | 0.536467 | 4_3:-10263662 | Msa0629400:CDS |
| AGCAAACTTGACAGCAATGT+GGG | 0.541075 | 4_3:+10262536 | None:intergenic |
| CCAGTCTCAACACGTCCGAC+AGG | 0.541163 | 4_3:+10262846 | None:intergenic |
| CCTGTCGGACGTGTTGAGAC+TGG | 0.541718 | 4_3:-10262846 | Msa0629400:CDS |
| GTGGCTGTTGGGGTCATCAA+GGG | 0.543592 | 4_3:-10262336 | Msa0629400:CDS |
| AGCTTCAAAACCACCAGTAG+TGG | 0.543721 | 4_3:+10263344 | None:intergenic |
| TTCTCTGAATATCCTCCACT+TGG | 0.543785 | 4_3:-10262390 | Msa0629400:CDS |
| AGGTGTGGCAGTCAAGCACA+GGG | 0.544526 | 4_3:+10262559 | None:intergenic |
| TGCACTGTCATTGATGCCCC+CGG | 0.544718 | 4_3:-10263438 | Msa0629400:CDS |
| TCATCCTATATGAAGAAGGT+TGG | 0.544820 | 4_3:-10263074 | Msa0629400:CDS |
| CAAGAAGAAATGAACCGTGC+AGG | 0.548923 | 4_3:-10262265 | Msa0629400:exon |
| TGTTGGGGTCATCAAGGGTG+TGG | 0.549207 | 4_3:-10262331 | Msa0629400:CDS |
| ATCATTGACTCCACTACTGG+TGG | 0.550177 | 4_3:-10263354 | Msa0629400:CDS |
| ATGCGTCAAACTGTGGCTGT+TGG | 0.557227 | 4_3:-10262348 | Msa0629400:CDS |
| GAAGCTGGTATTTCCAAGGA+TGG | 0.557613 | 4_3:-10263327 | Msa0629400:CDS |
| TCAACAACCATGGGCTTGGT+GGG | 0.557624 | 4_3:+10262417 | None:intergenic |
| AAGCAAGGAGAGCATGTTCA+CGG | 0.559179 | 4_3:+10263298 | None:intergenic |
| GCATATCTCTGACAGCAAAA+CGG | 0.563498 | 4_3:+10262367 | None:intergenic |
| ACAAATCTTGACTGGTACAA+GGG | 0.563768 | 4_3:-10262981 | Msa0629400:CDS |
| CAGGTATGATGAAATTGTGA+AGG | 0.569288 | 4_3:-10263102 | Msa0629400:CDS |
| TCTGGGAAGTCAACTACCAC+TGG | 0.570179 | 4_3:-10263645 | Msa0629400:CDS |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 4_3:+10263421 | None:intergenic |
| CACCCAAGTATTCCAAGAGC+AGG | 0.570501 | 4_3:-10263121 | Msa0629400:CDS |
| TTGGGTTCTTGACAAGCTCA+AGG | 0.572280 | 4_3:-10263526 | Msa0629400:CDS |
| AGCAAGGAGAGCATGTTCAC+GGG | 0.572470 | 4_3:+10263299 | None:intergenic |
| ATCCTGAAGTGGTAGTCGGA+GGG | 0.576252 | 4_3:+10262899 | None:intergenic |
| GATGATTCCCACCAAGCCCA+TGG | 0.580619 | 4_3:-10262424 | Msa0629400:CDS |
| AAACCAGAGATGGGAACGAA+TGG | 0.584939 | 4_3:+10263032 | None:intergenic |
| TGAAGGGTTTATATATAGTG+CGG | 0.585430 | 4_3:+10264990 | None:intergenic |
| GCGTCAAACTGTGGCTGTTG+GGG | 0.590275 | 4_3:-10262346 | Msa0629400:CDS |
| CACCAAGGATGACCCAGCCA+AGG | 0.594197 | 4_3:-10262649 | Msa0629400:CDS |
| GTGATGTTTAAATCTTTGCA+GGG | 0.596862 | 4_3:-10261939 | Msa0629400:three_prime_UTR |
| GAGAAAGTCTCAACAACCAT+GGG | 0.598729 | 4_3:+10262408 | None:intergenic |
| TTGACTTCCCAGAGTCGACA+TGG | 0.600770 | 4_3:+10263655 | None:intergenic |
| TTGACAAGCGTGTGATCGAG+AGG | 0.602725 | 4_3:-10263596 | Msa0629400:CDS |
| GGCACTTCCCGGTGACAATG+TGG | 0.604709 | 4_3:-10262730 | Msa0629400:CDS |
| TCTCCCTCAAAACCAGAGAT+GGG | 0.607478 | 4_3:+10263023 | None:intergenic |
| TCCTGAAGTGGTAGTCGGAG+GGG | 0.608492 | 4_3:+10262900 | None:intergenic |
| GAACAAAAGCTTAGAGATGA+CGG | 0.609468 | 4_3:+10262129 | None:intergenic |
| AGCGCTCTACAAATCTTGAC+TGG | 0.610562 | 4_3:-10262989 | Msa0629400:CDS |
| GGTGTGGAGAAGAAGGAACC+TGG | 0.612825 | 4_3:-10262315 | Msa0629400:CDS |
| AGAGAAAGTCTCAACAACCA+TGG | 0.614767 | 4_3:+10262407 | None:intergenic |
| GCACTTCCCGGTGACAATGT+GGG | 0.616830 | 4_3:-10262729 | Msa0629400:CDS |
| GCAAACTGAAGTCAAGTCTG+TGG | 0.619692 | 4_3:-10262778 | Msa0629400:CDS |
| TCACACCAAGAGTGAAAGCA+AGG | 0.621193 | 4_3:+10263283 | None:intergenic |
| ATCTTGTAGACATCCTGAAG+TGG | 0.621388 | 4_3:+10262888 | None:intergenic |
| CAAGGGCCCAACACTTCTTG+AGG | 0.622743 | 4_3:-10262964 | Msa0629400:CDS |
| AGCCATTTCCAATCTGGCCA+GGG | 0.623271 | 4_3:+10262586 | None:intergenic |
| AAACAGGGATACAAAGTGAA+GGG | 0.623909 | 4_3:+10264974 | None:intergenic |
| ACAGCAAAACGGCCAAGTGG+AGG | 0.624787 | 4_3:+10262378 | None:intergenic |
| GGTCACTTGATCTACAAGCT+CGG | 0.629406 | 4_3:-10263624 | Msa0629400:CDS |
| TACCTGCTCTTGGAATACTT+GGG | 0.632334 | 4_3:+10263119 | None:intergenic |
| AGCAAGGAAGAGAATGAGAG+TGG | 0.632553 | 4_3:+10264948 | None:intergenic |
| GCGCTAAAACCCTAGCAGCA+AGG | 0.632990 | 4_3:+10264932 | None:intergenic |
| GGAATTGGAACTGTTCCTGT+CGG | 0.634263 | 4_3:-10262861 | Msa0629400:CDS |
| CATCCTGAAGTGGTAGTCGG+AGG | 0.637451 | 4_3:+10262898 | None:intergenic |
| AGACATCCTGAAGTGGTAGT+CGG | 0.638051 | 4_3:+10262895 | None:intergenic |
| CAGCAAACTTGACAGCAATG+TGG | 0.638328 | 4_3:+10262535 | None:intergenic |
| AGAACTGGGTTCTAGATCGA+CGG | 0.639454 | 4_3:-10262104 | Msa0629400:three_prime_UTR |
| TAAACAGGGATACAAAGTGA+AGG | 0.640510 | 4_3:+10264973 | None:intergenic |
| GAGACTGGTACCATGAAACC+TGG | 0.643102 | 4_3:-10262831 | Msa0629400:CDS |
| AATGATCTGCTGCTGCAACA+AGG | 0.643325 | 4_3:-10263256 | Msa0629400:intron |
| TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 4_3:+10262544 | None:intergenic |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 4_3:+10263422 | None:intergenic |
| TCTGTCAAGGATCTCAAGCG+TGG | 0.663761 | 4_3:-10262687 | Msa0629400:CDS |
| TTAAATCCCACATTGTCACC+GGG | 0.665158 | 4_3:+10262723 | None:intergenic |
| CAGAGATATGCGTCAAACTG+TGG | 0.666313 | 4_3:-10262355 | Msa0629400:CDS |
| CAAGGATGACCCAGCCAAGG+AGG | 0.668893 | 4_3:-10262646 | Msa0629400:CDS |
| TTCTGGTAAGGAGATCGAGA+AGG | 0.668930 | 4_3:-10262487 | Msa0629400:CDS |
| GATTTAAACATCACACACCA+AGG | 0.670259 | 4_3:+10261948 | None:intergenic |
| CTGACAGCAAAACGGCCAAG+TGG | 0.679918 | 4_3:+10262375 | None:intergenic |
| GTGATTATCATGAATCACCC+TGG | 0.681230 | 4_3:-10262603 | Msa0629400:CDS |
| CTTGTAGATCAAGTGACCAG+TGG | 0.682705 | 4_3:+10263629 | None:intergenic |
| TACCATGAAACCTGGAATGG+TGG | 0.682936 | 4_3:-10262823 | Msa0629400:CDS |
| AAACTTGACAGCAATGTGGG+AGG | 0.695398 | 4_3:+10262539 | None:intergenic |
| CACTTGATCTACAAGCTCGG+AGG | 0.699953 | 4_3:-10263621 | Msa0629400:CDS |
| TCACAATTGACATTGCTCTG+TGG | 0.708352 | 4_3:-10263485 | Msa0629400:CDS |
| TGATGTTTAAATCTTTGCAG+GGG | 0.709762 | 4_3:-10261938 | Msa0629400:three_prime_UTR |
| TGGTACCATGAAACCTGGAA+TGG | 0.712415 | 4_3:-10262826 | Msa0629400:CDS |
| ACTGGGTTCTAGATCGACGG+TGG | 0.727144 | 4_3:-10262101 | Msa0629400:three_prime_UTR |
| GGTGTGGCAGTCAAGCACAG+GGG | 0.731105 | 4_3:+10262560 | None:intergenic |
| TTATGTTGCCTCAAACACCA+AGG | 0.751394 | 4_3:-10262664 | Msa0629400:CDS |
| GCATCATGAATCTCTCACTG+AGG | 0.754777 | 4_3:-10262751 | Msa0629400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCATATGAAAAATTT+TGG | - | chr4_3:10262245-10262264 | Msa0629400:three_prime_UTR | 10.0% |
| !!! | TATTTCATATGAAAAATTTT+GGG | - | chr4_3:10262246-10262265 | Msa0629400:three_prime_UTR | 10.0% |
| !!! | ATAGTTGTTATTACAATAAA+TGG | - | chr4_3:10264670-10264689 | Msa0629400:intron | 15.0% |
| !! | ATTCAGAATCAAAATTAAAC+AGG | + | chr4_3:10262195-10262214 | None:intergenic | 20.0% |
| !! | TGTCAAAAATTCAAATTTGA+TGG | + | chr4_3:10262398-10262417 | None:intergenic | 20.0% |
| !!! | TTTTACTTCATATCTTGAAT+TGG | - | chr4_3:10262488-10262507 | Msa0629400:CDS | 20.0% |
| !!! | TTTTACTTATGTACTGTTAA+TGG | - | chr4_3:10262877-10262896 | Msa0629400:CDS | 20.0% |
| !!! | TCATGATTTATTTTTGAATC+AGG | - | chr4_3:10263029-10263048 | Msa0629400:CDS | 20.0% |
| !!! | TTTGTGATTTTAAGCTTTTA+AGG | - | chr4_3:10263169-10263188 | Msa0629400:intron | 20.0% |
| !! | TAATCTAATGCAACTAAATA+GGG | + | chr4_3:10263688-10263707 | None:intergenic | 20.0% |
| !! | ATAATCTAATGCAACTAAAT+AGG | + | chr4_3:10263689-10263708 | None:intergenic | 20.0% |
| !! | TTATTACAATAAATGGTTTG+TGG | - | chr4_3:10264677-10264696 | Msa0629400:intron | 20.0% |
| ! | CTATGTAATCAGAAATGAAT+GGG | + | chr4_3:10262044-10262063 | None:intergenic | 25.0% |
| ! | TCTATGTAATCAGAAATGAA+TGG | + | chr4_3:10262045-10262064 | None:intergenic | 25.0% |
| !!! | TTCAATTTTGTTTACGATTC+TGG | - | chr4_3:10262129-10262148 | Msa0629400:three_prime_UTR | 25.0% |
| ! | GATTCTGAATTTAGATATTG+TGG | - | chr4_3:10262205-10262224 | Msa0629400:intron | 25.0% |
| !!! | GTGTTTTTGTTTCATTATTC+TGG | - | chr4_3:10262581-10262600 | Msa0629400:CDS | 25.0% |
| ! | GTGAGAAAATTGTCATTATT+CGG | - | chr4_3:10262603-10262622 | Msa0629400:CDS | 25.0% |
| ! | TTATTCGGTAGCAATATTAT+CGG | - | chr4_3:10262618-10262637 | Msa0629400:CDS | 25.0% |
| ! | TTAAACTTGAATTGTTGACA+TGG | - | chr4_3:10262761-10262780 | Msa0629400:CDS | 25.0% |
| ! | AATCTATTATTCTTGAGTTC+TGG | - | chr4_3:10262848-10262867 | Msa0629400:CDS | 25.0% |
| ! | ATCTATTATTCTTGAGTTCT+GGG | - | chr4_3:10262849-10262868 | Msa0629400:CDS | 25.0% |
| ! | ATGAACATCATAACATATGA+TGG | - | chr4_3:10262983-10263002 | Msa0629400:CDS | 25.0% |
| !!! | TGTTGTTTTCTTTCTTGAAT+TGG | - | chr4_3:10263138-10263157 | Msa0629400:intron | 25.0% |
| !!! | TTTTAAGCTTTTAAGGACAA+TGG | - | chr4_3:10263176-10263195 | Msa0629400:intron | 25.0% |
| !!! | TTTAAGCTTTTAAGGACAAT+GGG | - | chr4_3:10263177-10263196 | Msa0629400:intron | 25.0% |
| ! | TTCATTAAGAACATGATTAC+TGG | - | chr4_3:10263486-10263505 | Msa0629400:CDS | 25.0% |
| ! | AATCTAATGCAACTAAATAG+GGG | + | chr4_3:10263687-10263706 | None:intergenic | 25.0% |
| !! | TTTTTGATATCTTGAACAGA+TGG | - | chr4_3:10263738-10263757 | Msa0629400:intron | 25.0% |
| !!! | TGTCTTGTTAAGTTGTTTTT+CGG | - | chr4_3:10264720-10264739 | Msa0629400:intron | 25.0% |
| ! | GATATTAAAAACAAATCAGC+AGG | + | chr4_3:10264900-10264919 | None:intergenic | 25.0% |
| ! | ATATTTGTGTGTTTATTCCT+TGG | - | chr4_3:10264926-10264945 | Msa0629400:five_prime_UTR | 25.0% |
| TGAAGGGTTTATATATAGTG+CGG | + | chr4_3:10261904-10261923 | None:intergenic | 30.0% | |
| ! | AGAGATTGATTTACCTTTGA+AGG | + | chr4_3:10261987-10262006 | None:intergenic | 30.0% |
| ATGTGACTTAGAAACGAAAA+AGG | + | chr4_3:10262010-10262029 | None:intergenic | 30.0% | |
| CGATTATGGTATGATAATCA+TGG | - | chr4_3:10262156-10262175 | Msa0629400:intron | 30.0% | |
| TAGATATTGTGGAGTTGAAT+TGG | - | chr4_3:10262216-10262235 | Msa0629400:intron | 30.0% | |
| GATCTATCGAATCAAAACAT+AGG | + | chr4_3:10262793-10262812 | None:intergenic | 30.0% | |
| !! | AATTTAAGCTTAAGCACTGA+GGG | - | chr4_3:10262920-10262939 | Msa0629400:CDS | 30.0% |
| ATTAGTCGATTAAGACACAA+GGG | + | chr4_3:10263076-10263095 | None:intergenic | 30.0% | |
| CACATTAACATTGTTGTCAT+TGG | - | chr4_3:10263213-10263232 | Msa0629400:intron | 30.0% | |
| AGTTTCATCCTATATGAAGA+AGG | - | chr4_3:10263813-10263832 | Msa0629400:intron | 30.0% | |
| ! | GAACGAATGGAATTTTATCT+GGG | + | chr4_3:10263849-10263868 | None:intergenic | 30.0% |
| ! | TGTTAAGAATGTTTCTGTCA+AGG | - | chr4_3:10264191-10264210 | Msa0629400:intron | 30.0% |
| TGTGATGTTTAAATCTTTGC+AGG | - | chr4_3:10264951-10264970 | Msa0629400:five_prime_UTR | 30.0% | |
| GTGATGTTTAAATCTTTGCA+GGG | - | chr4_3:10264952-10264971 | Msa0629400:five_prime_UTR | 30.0% | |
| TGATGTTTAAATCTTTGCAG+GGG | - | chr4_3:10264953-10264972 | Msa0629400:five_prime_UTR | 30.0% | |
| AAACAGGGATACAAAGTGAA+GGG | + | chr4_3:10261920-10261939 | None:intergenic | 35.0% | |
| TAAACAGGGATACAAAGTGA+AGG | + | chr4_3:10261921-10261940 | None:intergenic | 35.0% | |
| ACGATTCTGGTATTCGATTA+TGG | - | chr4_3:10262142-10262161 | Msa0629400:three_prime_UTR | 35.0% | |
| CATCGCAACTGAAAAACATT+AGG | + | chr4_3:10262285-10262304 | None:intergenic | 35.0% | |
| ! | TTGCGATGCTGAAGTTATTT+TGG | - | chr4_3:10262297-10262316 | Msa0629400:CDS | 35.0% |
| !! | TGCGATGCTGAAGTTATTTT+GGG | - | chr4_3:10262298-10262317 | Msa0629400:CDS | 35.0% |
| ! | AGCAATATTATCGGTTGTGA+TGG | - | chr4_3:10262627-10262646 | Msa0629400:CDS | 35.0% |
| ! | GAATTTAAGCTTAAGCACTG+AGG | - | chr4_3:10262919-10262938 | Msa0629400:CDS | 35.0% |
| CATTAGTCGATTAAGACACA+AGG | + | chr4_3:10263077-10263096 | None:intergenic | 35.0% | |
| !!! | TTTTGAAGCTGGTATTTCCA+AGG | - | chr4_3:10263560-10263579 | Msa0629400:CDS | 35.0% |
| AATTTCATCATACCTGCTCT+TGG | + | chr4_3:10263785-10263804 | None:intergenic | 35.0% | |
| CAGGTATGATGAAATTGTGA+AGG | - | chr4_3:10263789-10263808 | Msa0629400:intron | 35.0% | |
| TCATCCTATATGAAGAAGGT+TGG | - | chr4_3:10263817-10263836 | Msa0629400:intron | 35.0% | |
| ATAGCCAACCTTCTTCATAT+AGG | + | chr4_3:10263824-10263843 | None:intergenic | 35.0% | |
| ! | GGAACGAATGGAATTTTATC+TGG | + | chr4_3:10263850-10263869 | None:intergenic | 35.0% |
| TACAAATCTTGACTGGTACA+AGG | - | chr4_3:10263909-10263928 | Msa0629400:intron | 35.0% | |
| ACAAATCTTGACTGGTACAA+GGG | - | chr4_3:10263910-10263929 | Msa0629400:intron | 35.0% | |
| ATCAAATCAATGAGCCTAAG+AGG | - | chr4_3:10263956-10263975 | Msa0629400:intron | 35.0% | |
| ATTAAATCCCACATTGTCAC+CGG | + | chr4_3:10264172-10264191 | None:intergenic | 35.0% | |
| !! | AGCTTGTTACTAAGATTGAC+AGG | - | chr4_3:10264379-10264398 | Msa0629400:intron | 35.0% |
| TTAGTTATCTTAACAGTGCC+AGG | + | chr4_3:10264597-10264616 | None:intergenic | 35.0% | |
| GAACAAAAGCTTAGAGATGA+CGG | + | chr4_3:10264765-10264784 | None:intergenic | 35.0% | |
| ! | TAAGCTTTTGTTCTCAGAAC+TGG | - | chr4_3:10264772-10264791 | Msa0629400:intron | 35.0% |
| ! | AAGCTTTTGTTCTCAGAACT+GGG | - | chr4_3:10264773-10264792 | Msa0629400:intron | 35.0% |
| ! | ACTTGCTGCTTGTAAAATTC+AGG | + | chr4_3:10264870-10264889 | None:intergenic | 35.0% |
| TAAAAACAAATCAGCAGGTC+TGG | + | chr4_3:10264895-10264914 | None:intergenic | 35.0% | |
| GATTTAAACATCACACACCA+AGG | + | chr4_3:10264946-10264965 | None:intergenic | 35.0% | |
| ! | GGCATGTGTCTGAATATTTT+AGG | - | chr4_3:10264974-10264993 | Msa0629400:five_prime_UTR | 35.0% |
| GAATGAGAGTGGAGTAAACA+GGG | + | chr4_3:10261935-10261954 | None:intergenic | 40.0% | |
| AGAATGAGAGTGGAGTAAAC+AGG | + | chr4_3:10261936-10261955 | None:intergenic | 40.0% | |
| !! | GCTTTTAAGGACAATGGGTA+AGG | - | chr4_3:10263182-10263201 | Msa0629400:intron | 40.0% |
| AAGGACAATGGGTAAGGAAA+AGG | - | chr4_3:10263188-10263207 | Msa0629400:intron | 40.0% | |
| AGCGTTCATTCAAGTATGCT+TGG | - | chr4_3:10263346-10263365 | Msa0629400:CDS | 40.0% | |
| GCGTTCATTCAAGTATGCTT+GGG | - | chr4_3:10263347-10263366 | Msa0629400:CDS | 40.0% | |
| TCACAATTGACATTGCTCTG+TGG | - | chr4_3:10263406-10263425 | Msa0629400:CDS | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | chr4_3:10263474-10263493 | None:intergenic | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | chr4_3:10263475-10263494 | None:intergenic | 40.0% | |
| TACCTGCTCTTGGAATACTT+GGG | + | chr4_3:10263775-10263794 | None:intergenic | 40.0% | |
| ATACCTGCTCTTGGAATACT+TGG | + | chr4_3:10263776-10263795 | None:intergenic | 40.0% | |
| ATCTTGTAGACATCCTGAAG+TGG | + | chr4_3:10264006-10264025 | None:intergenic | 40.0% | |
| CTTCAGGATGTCTACAAGAT+TGG | - | chr4_3:10264006-10264025 | Msa0629400:intron | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | chr4_3:10264015-10264034 | Msa0629400:intron | 40.0% | |
| TTAAATCCCACATTGTCACC+GGG | + | chr4_3:10264171-10264190 | None:intergenic | 40.0% | |
| TTATGTTGCCTCAAACACCA+AGG | - | chr4_3:10264227-10264246 | Msa0629400:intron | 40.0% | |
| GTGATTATCATGAATCACCC+TGG | - | chr4_3:10264288-10264307 | Msa0629400:intron | 40.0% | |
| AGCAAACTTGACAGCAATGT+GGG | + | chr4_3:10264358-10264377 | None:intergenic | 40.0% | |
| TCTCCATTCTTCAGGAACTT+GGG | + | chr4_3:10264432-10264451 | None:intergenic | 40.0% | |
| ATCTCCATTCTTCAGGAACT+TGG | + | chr4_3:10264433-10264452 | None:intergenic | 40.0% | |
| GAGAAAGTCTCAACAACCAT+GGG | + | chr4_3:10264486-10264505 | None:intergenic | 40.0% | |
| AGAGAAAGTCTCAACAACCA+TGG | + | chr4_3:10264487-10264506 | None:intergenic | 40.0% | |
| TTCTCTGAATATCCTCCACT+TGG | - | chr4_3:10264501-10264520 | Msa0629400:intron | 40.0% | |
| GCATATCTCTGACAGCAAAA+CGG | + | chr4_3:10264527-10264546 | None:intergenic | 40.0% | |
| CCAAGAAAAATCATCCTGCA+CGG | + | chr4_3:10264643-10264662 | None:intergenic | 40.0% | |
| ! | CGTGCAGGATGATTTTTCTT+GGG | - | chr4_3:10264641-10264660 | Msa0629400:intron | 40.0% |
| AGCAAGGAAGAGAATGAGAG+TGG | + | chr4_3:10261946-10261965 | None:intergenic | 45.0% | |
| TCATTCTCTTCCTTGCTGCT+AGG | - | chr4_3:10261949-10261968 | Msa0629400:three_prime_UTR | 45.0% | |
| CATTCTCTTCCTTGCTGCTA+GGG | - | chr4_3:10261950-10261969 | Msa0629400:three_prime_UTR | 45.0% | |
| !! | GGTTTTAGCGCATCCTTCAA+AGG | - | chr4_3:10261971-10261990 | Msa0629400:three_prime_UTR | 45.0% |
| CTTGTAGATCAAGTGACCAG+TGG | + | chr4_3:10263265-10263284 | None:intergenic | 45.0% | |
| GGTCACTTGATCTACAAGCT+CGG | - | chr4_3:10263267-10263286 | Msa0629400:CDS | 45.0% | |
| TTGGGTTCTTGACAAGCTCA+AGG | - | chr4_3:10263365-10263384 | Msa0629400:CDS | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | chr4_3:10263473-10263492 | None:intergenic | 45.0% | |
| GAGAACAGCACAATCAGCTT+GGG | + | chr4_3:10263517-10263536 | None:intergenic | 45.0% | |
| TGAGAACAGCACAATCAGCT+TGG | + | chr4_3:10263518-10263537 | None:intergenic | 45.0% | |
| !! | CTCATCATTGACTCCACTAC+TGG | - | chr4_3:10263534-10263553 | Msa0629400:CDS | 45.0% |
| !! | ATCATTGACTCCACTACTGG+TGG | - | chr4_3:10263537-10263556 | Msa0629400:CDS | 45.0% |
| AGCTTCAAAACCACCAGTAG+TGG | + | chr4_3:10263550-10263569 | None:intergenic | 45.0% | |
| !!! | ACTACTGGTGGTTTTGAAGC+TGG | - | chr4_3:10263549-10263568 | Msa0629400:CDS | 45.0% |
| GAAGCTGGTATTTCCAAGGA+TGG | - | chr4_3:10263564-10263583 | Msa0629400:CDS | 45.0% | |
| ! | AAGCAAGGAGAGCATGTTCA+CGG | + | chr4_3:10263596-10263615 | None:intergenic | 45.0% |
| TCACACCAAGAGTGAAAGCA+AGG | + | chr4_3:10263611-10263630 | None:intergenic | 45.0% | |
| ! | TTGCTTTCACTCTTGGTGTG+AGG | - | chr4_3:10263610-10263629 | Msa0629400:CDS | 45.0% |
| AATGATCTGCTGCTGCAACA+AGG | - | chr4_3:10263635-10263654 | Msa0629400:CDS | 45.0% | |
| CTTGGAATACTTGGGTGTAG+TGG | + | chr4_3:10263767-10263786 | None:intergenic | 45.0% | |
| ATTCCATTCGTTCCCATCTC+TGG | - | chr4_3:10263856-10263875 | Msa0629400:intron | 45.0% | |
| AAACCAGAGATGGGAACGAA+TGG | + | chr4_3:10263862-10263881 | None:intergenic | 45.0% | |
| !!! | GTTCCCATCTCTGGTTTTGA+GGG | - | chr4_3:10263865-10263884 | Msa0629400:intron | 45.0% |
| TCTCCCTCAAAACCAGAGAT+GGG | + | chr4_3:10263871-10263890 | None:intergenic | 45.0% | |
| ATCTCCCTCAAAACCAGAGA+TGG | + | chr4_3:10263872-10263891 | None:intergenic | 45.0% | |
| AGCGCTCTACAAATCTTGAC+TGG | - | chr4_3:10263902-10263921 | Msa0629400:intron | 45.0% | |
| !! | CAAGAGCCTCAAGAAGTGTT+GGG | + | chr4_3:10263936-10263955 | None:intergenic | 45.0% |
| ! | TCAAGAGCCTCAAGAAGTGT+TGG | + | chr4_3:10263937-10263956 | None:intergenic | 45.0% |
| AGACATCCTGAAGTGGTAGT+CGG | + | chr4_3:10263999-10264018 | None:intergenic | 45.0% | |
| CAGGATGTCTACAAGATTGG+AGG | - | chr4_3:10264009-10264028 | Msa0629400:intron | 45.0% | |
| GGAATTGGAACTGTTCCTGT+CGG | - | chr4_3:10264030-10264049 | Msa0629400:intron | 45.0% | |
| TGGTACCATGAAACCTGGAA+TGG | - | chr4_3:10264065-10264084 | Msa0629400:intron | 45.0% | |
| TACCATGAAACCTGGAATGG+TGG | - | chr4_3:10264068-10264087 | Msa0629400:intron | 45.0% | |
| ACTTCAGTTTGCAGTCCAGT+TGG | + | chr4_3:10264105-10264124 | None:intergenic | 45.0% | |
| GCAAACTGAAGTCAAGTCTG+TGG | - | chr4_3:10264113-10264132 | Msa0629400:intron | 45.0% | |
| GCATCATGAATCTCTCACTG+AGG | - | chr4_3:10264140-10264159 | Msa0629400:intron | 45.0% | |
| AAACTTGACAGCAATGTGGG+AGG | + | chr4_3:10264355-10264374 | None:intergenic | 45.0% | |
| CAGCAAACTTGACAGCAATG+TGG | + | chr4_3:10264359-10264378 | None:intergenic | 45.0% | |
| ACTAAGATTGACAGGCGTTC+TGG | - | chr4_3:10264387-10264406 | Msa0629400:intron | 45.0% | |
| TTCTGGTAAGGAGATCGAGA+AGG | - | chr4_3:10264404-10264423 | Msa0629400:intron | 45.0% | |
| TTCCTGAAGAATGGAGATGC+TGG | - | chr4_3:10264435-10264454 | Msa0629400:intron | 45.0% | |
| TACCAGCATCTCCATTCTTC+AGG | + | chr4_3:10264440-10264459 | None:intergenic | 45.0% | |
| CAGAGATATGCGTCAAACTG+TGG | - | chr4_3:10264536-10264555 | Msa0629400:intron | 45.0% | |
| CTGCACGGTTCATTTCTTCT+TGG | + | chr4_3:10264628-10264647 | None:intergenic | 45.0% | |
| CAAGAAGAAATGAACCGTGC+AGG | - | chr4_3:10264626-10264645 | Msa0629400:intron | 45.0% | |
| ! | CCGTGCAGGATGATTTTTCT+TGG | - | chr4_3:10264640-10264659 | Msa0629400:intron | 45.0% |
| !! | AGAACTGGGTTCTAGATCGA+CGG | - | chr4_3:10264787-10264806 | Msa0629400:intron | 45.0% |
| ATCTCATTGCCCAGAATGTC+AGG | - | chr4_3:10264999-10265018 | Msa0629400:five_prime_UTR | 45.0% | |
| !! | TCATTGGCCATGTCGACTCT+GGG | - | chr4_3:10263229-10263248 | Msa0629400:intron | 50.0% |
| TTGACTTCCCAGAGTCGACA+TGG | + | chr4_3:10263239-10263258 | None:intergenic | 50.0% | |
| TCTGGGAAGTCAACTACCAC+TGG | - | chr4_3:10263246-10263265 | Msa0629400:intron | 50.0% | |
| CACTTGATCTACAAGCTCGG+AGG | - | chr4_3:10263270-10263289 | Msa0629400:CDS | 50.0% | |
| TTGACAAGCGTGTGATCGAG+AGG | - | chr4_3:10263295-10263314 | Msa0629400:CDS | 50.0% | |
| AATGAAATCCCTGTGTCCGG+GGG | + | chr4_3:10263472-10263491 | None:intergenic | 50.0% | |
| ! | AGCAAGGAGAGCATGTTCAC+GGG | + | chr4_3:10263595-10263614 | None:intergenic | 50.0% |
| GCTCTCCTTGCTTTCACTCT+TGG | - | chr4_3:10263603-10263622 | Msa0629400:CDS | 50.0% | |
| CACCCAAGTATTCCAAGAGC+AGG | - | chr4_3:10263770-10263789 | Msa0629400:intron | 50.0% | |
| !!! | CGTTCCCATCTCTGGTTTTG+AGG | - | chr4_3:10263864-10263883 | Msa0629400:intron | 50.0% |
| ATCCTGAAGTGGTAGTCGGA+GGG | + | chr4_3:10263995-10264014 | None:intergenic | 50.0% | |
| GAGACTGGTACCATGAAACC+TGG | - | chr4_3:10264060-10264079 | Msa0629400:intron | 50.0% | |
| CACCACCATTCCAGGTTTCA+TGG | + | chr4_3:10264073-10264092 | None:intergenic | 50.0% | |
| GCAAAAGTCACCACCATTCC+AGG | + | chr4_3:10264081-10264100 | None:intergenic | 50.0% | |
| ! | GTGGTGACTTTTGCTCCAAC+TGG | - | chr4_3:10264087-10264106 | Msa0629400:intron | 50.0% |
| TCTGTCAAGGATCTCAAGCG+TGG | - | chr4_3:10264204-10264223 | Msa0629400:intron | 50.0% | |
| !! | TGGGTCATCCTTGGTGTTTG+AGG | + | chr4_3:10264238-10264257 | None:intergenic | 50.0% |
| TGTGAAGTTAGCAGCCTCCT+TGG | + | chr4_3:10264262-10264281 | None:intergenic | 50.0% | |
| ATGAATCACCCTGGCCAGAT+TGG | - | chr4_3:10264297-10264316 | Msa0629400:intron | 50.0% | |
| AGCCATTTCCAATCTGGCCA+GGG | + | chr4_3:10264308-10264327 | None:intergenic | 50.0% | |
| TAGCCATTTCCAATCTGGCC+AGG | + | chr4_3:10264309-10264328 | None:intergenic | 50.0% | |
| GGGCATAGCCATTTCCAATC+TGG | + | chr4_3:10264314-10264333 | None:intergenic | 50.0% | |
| GATTGACAGGCGTTCTGGTA+AGG | - | chr4_3:10264392-10264411 | Msa0629400:intron | 50.0% | |
| GAGCCCAAGTTCCTGAAGAA+TGG | - | chr4_3:10264426-10264445 | Msa0629400:intron | 50.0% | |
| ! | TCAACAACCATGGGCTTGGT+GGG | + | chr4_3:10264477-10264496 | None:intergenic | 50.0% |
| AGTCTCAACAACCATGGGCT+TGG | + | chr4_3:10264481-10264500 | None:intergenic | 50.0% | |
| ATGCGTCAAACTGTGGCTGT+TGG | - | chr4_3:10264543-10264562 | Msa0629400:intron | 50.0% | |
| TGCGTCAAACTGTGGCTGTT+GGG | - | chr4_3:10264544-10264563 | Msa0629400:intron | 50.0% | |
| ! | CATCAAGGGTGTGGAGAAGA+AGG | - | chr4_3:10264569-10264588 | Msa0629400:intron | 50.0% |
| GCGCTAAAACCCTAGCAGCA+AGG | + | chr4_3:10261962-10261981 | None:intergenic | 55.0% | |
| !! | GTCATTGGCCATGTCGACTC+TGG | - | chr4_3:10263228-10263247 | Msa0629400:intron | 55.0% |
| CTCAAGGCTGAGCGTGAAAG+AGG | - | chr4_3:10263381-10263400 | Msa0629400:CDS | 55.0% | |
| TGCACTGTCATTGATGCCCC+CGG | - | chr4_3:10263453-10263472 | Msa0629400:CDS | 55.0% | |
| TTCACGGGTCTGACCATCCT+TGG | + | chr4_3:10263580-10263599 | None:intergenic | 55.0% | |
| CAAGGGCCCAACACTTCTTG+AGG | - | chr4_3:10263927-10263946 | Msa0629400:intron | 55.0% | |
| GGCTTGTCTGATGGCCTCTT+AGG | + | chr4_3:10263973-10263992 | None:intergenic | 55.0% | |
| TCCTGAAGTGGTAGTCGGAG+GGG | + | chr4_3:10263994-10264013 | None:intergenic | 55.0% | |
| CATCCTGAAGTGGTAGTCGG+AGG | + | chr4_3:10263996-10264015 | None:intergenic | 55.0% | |
| ! | TCTCTCACTGAGGCACTTCC+CGG | - | chr4_3:10264150-10264169 | Msa0629400:intron | 55.0% |
| GCACTTCCCGGTGACAATGT+GGG | - | chr4_3:10264162-10264181 | Msa0629400:intron | 55.0% | |
| AGTTAGCAGCCTCCTTGGCT+GGG | + | chr4_3:10264257-10264276 | None:intergenic | 55.0% | |
| AAGTTAGCAGCCTCCTTGGC+TGG | + | chr4_3:10264258-10264277 | None:intergenic | 55.0% | |
| CACCCTGGCCAGATTGGAAA+TGG | - | chr4_3:10264303-10264322 | Msa0629400:intron | 55.0% | |
| AGGTGTGGCAGTCAAGCACA+GGG | + | chr4_3:10264335-10264354 | None:intergenic | 55.0% | |
| TGACAGCAATGTGGGAGGTG+TGG | + | chr4_3:10264350-10264369 | None:intergenic | 55.0% | |
| GATGATTCCCACCAAGCCCA+TGG | - | chr4_3:10264467-10264486 | Msa0629400:intron | 55.0% | |
| CTCAACAACCATGGGCTTGG+TGG | + | chr4_3:10264478-10264497 | None:intergenic | 55.0% | |
| ACAGCAAAACGGCCAAGTGG+AGG | + | chr4_3:10264516-10264535 | None:intergenic | 55.0% | |
| CTGACAGCAAAACGGCCAAG+TGG | + | chr4_3:10264519-10264538 | None:intergenic | 55.0% | |
| GCGTCAAACTGTGGCTGTTG+GGG | - | chr4_3:10264545-10264564 | Msa0629400:intron | 55.0% | |
| TGTGGCTGTTGGGGTCATCA+AGG | - | chr4_3:10264554-10264573 | Msa0629400:intron | 55.0% | |
| GTGGCTGTTGGGGTCATCAA+GGG | - | chr4_3:10264555-10264574 | Msa0629400:intron | 55.0% | |
| TGTTGGGGTCATCAAGGGTG+TGG | - | chr4_3:10264560-10264579 | Msa0629400:intron | 55.0% | |
| GGTGTGGAGAAGAAGGAACC+TGG | - | chr4_3:10264576-10264595 | Msa0629400:intron | 55.0% | |
| !! | ACTGGGTTCTAGATCGACGG+TGG | - | chr4_3:10264790-10264809 | Msa0629400:intron | 55.0% |
| TCATTGATGCCCCCGGACAC+AGG | - | chr4_3:10263460-10263479 | Msa0629400:CDS | 60.0% | |
| CATTGATGCCCCCGGACACA+GGG | - | chr4_3:10263461-10263480 | Msa0629400:CDS | 60.0% | |
| AGTCGGAGGGGCTTGTCTGA+TGG | + | chr4_3:10263982-10264001 | None:intergenic | 60.0% | |
| CCAGTCTCAACACGTCCGAC+AGG | + | chr4_3:10264048-10264067 | None:intergenic | 60.0% | |
| CCTGTCGGACGTGTTGAGAC+TGG | - | chr4_3:10264045-10264064 | Msa0629400:intron | 60.0% | |
| GGCACTTCCCGGTGACAATG+TGG | - | chr4_3:10264161-10264180 | Msa0629400:intron | 60.0% | |
| CACCAAGGATGACCCAGCCA+AGG | - | chr4_3:10264242-10264261 | Msa0629400:intron | 60.0% | |
| CTCCTTGGCTGGGTCATCCT+TGG | + | chr4_3:10264247-10264266 | None:intergenic | 60.0% | |
| CAAGGATGACCCAGCCAAGG+AGG | - | chr4_3:10264245-10264264 | Msa0629400:intron | 60.0% | |
| GGTGTGGCAGTCAAGCACAG+GGG | + | chr4_3:10264334-10264353 | None:intergenic | 60.0% | |
| GAGGTGTGGCAGTCAAGCAC+AGG | + | chr4_3:10264336-10264355 | None:intergenic | 60.0% | |
| GCCCCTCCGACTACCACTTC+AGG | - | chr4_3:10263990-10264009 | Msa0629400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10261888 | 10265025 | 10261888 | ID=Msa0629400;Name=Msa0629400 |
| chr4_3 | mRNA | 10261888 | 10265025 | 10261888 | ID=Msa0629400-mRNA-1;Parent=Msa0629400;Name=Msa0629400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|0.33|0|4|311|447 |
| chr4_3 | exon | 10261888 | 10262164 | 10261888 | ID=Msa0629400-mRNA-1:exon:3122;Parent=Msa0629400-mRNA-1 |
| chr4_3 | exon | 10262241 | 10263156 | 10262241 | ID=Msa0629400-mRNA-1:exon:3121;Parent=Msa0629400-mRNA-1 |
| chr4_3 | exon | 10263257 | 10263749 | 10263257 | ID=Msa0629400-mRNA-1:exon:3120;Parent=Msa0629400-mRNA-1 |
| chr4_3 | exon | 10264921 | 10265025 | 10264921 | ID=Msa0629400-mRNA-1:exon:3119;Parent=Msa0629400-mRNA-1 |
| chr4_3 | five_prime_UTR | 10264921 | 10265025 | 10264921 | ID=Msa0629400-mRNA-1:five_prime_utr;Parent=Msa0629400-mRNA-1 |
| chr4_3 | five_prime_UTR | 10263719 | 10263749 | 10263719 | ID=Msa0629400-mRNA-1:five_prime_utr;Parent=Msa0629400-mRNA-1 |
| chr4_3 | CDS | 10263257 | 10263718 | 10263257 | ID=Msa0629400-mRNA-1:cds;Parent=Msa0629400-mRNA-1 |
| chr4_3 | CDS | 10262275 | 10263156 | 10262275 | ID=Msa0629400-mRNA-1:cds;Parent=Msa0629400-mRNA-1 |
| chr4_3 | three_prime_UTR | 10262241 | 10262274 | 10262241 | ID=Msa0629400-mRNA-1:three_prime_utr;Parent=Msa0629400-mRNA-1 |
| chr4_3 | three_prime_UTR | 10261888 | 10262164 | 10261888 | ID=Msa0629400-mRNA-1:three_prime_utr;Parent=Msa0629400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
