AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659130 MtrunA17_Chr8g0383751 95.367 259 9 1 1 259 10 265 0.0 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659130 AT5G09820.2 54.902 255 99 2 12 254 21 271 2.39e-90 268
Msa0659130 AT5G09820.1 54.506 233 90 2 12 232 21 249 3.82e-78 237
Msa0659130 AT5G09820.3 51.042 192 78 2 12 191 21 208 6.98e-54 174
Msa0659130 AT4G22240.1 30.568 229 115 7 61 250 77 300 8.85e-17 78.6
Msa0659130 AT4G04020.1 28.378 222 110 6 70 250 95 308 1.65e-15 75.1
Msa0659130 AT3G26070.1 30.348 201 96 8 64 254 69 235 2.15e-14 71.2

Find 84 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCACTATCTCTATTT+TGG 0.111980 4_3:-69443500 Msa0659130:CDS
TATTCTGTATTTGATCTTAA+AGG 0.149815 4_3:-69444264 Msa0659130:five_prime_UTR
AAAAGGGTGTCTCAAAATTT+TGG 0.199940 4_3:+69444350 None:intergenic
AGTAGGAGATTTAACTGTTT+TGG 0.236034 4_3:+69442657 None:intergenic
GAAGTTAGAAATTGAAAGTT+TGG 0.249564 4_3:-69443829 Msa0659130:CDS
GGAATCAACAGAGGGATATT+TGG 0.264142 4_3:-69443867 Msa0659130:CDS
ATCATGAAACTTCAAAGATT+TGG 0.272932 4_3:-69444172 Msa0659130:CDS
TGTTGGCCATGTTTCATTCT+AGG 0.280611 4_3:-69441959 Msa0659130:three_prime_UTR
TGGATAAACACTTCAAGATT+TGG 0.298180 4_3:-69444130 Msa0659130:CDS
TCTAGTTCTAGAGTTGGTTC+TGG 0.326515 4_3:+69443777 None:intergenic
TTGAAGTTTCATGATATTCA+TGG 0.326931 4_3:+69444180 None:intergenic
CACAGTTGATGAACCTGTTT+CGG 0.340714 4_3:-69442415 Msa0659130:intron
GATTTGGTGAGAAGCCATTA+TGG 0.349218 4_3:-69444114 Msa0659130:CDS
CAAATACAGAATAATGAAAC+AGG 0.355653 4_3:+69444274 None:intergenic
AAAGTTGCAGAACAATCTTC+TGG 0.358341 4_3:-69444070 Msa0659130:CDS
CCAATGCAATAAAGTCTCTT+AGG 0.361573 4_3:+69443455 None:intergenic
GACCACCTAGTAATCTTTCA+TGG 0.363929 4_3:-69444150 Msa0659130:CDS
CTAAGAGACTTTATTGCATT+GGG 0.375979 4_3:-69443454 Msa0659130:CDS
GCAACTTTAATGATAGTAAT+GGG 0.377037 4_3:+69444085 None:intergenic
TCTAGAGTTGGTTCTGGAGT+TGG 0.385057 4_3:+69443783 None:intergenic
GGATCAAGAAGGACAAAGTT+AGG 0.406396 4_3:-69443478 Msa0659130:CDS
GTGATCAAGTTCAATGCAAA+AGG 0.408117 4_3:-69442733 Msa0659130:CDS
CCTAAGAGACTTTATTGCAT+TGG 0.415989 4_3:-69443455 Msa0659130:CDS
CGAAGTTTGTTTCGACATAG+TGG 0.440289 4_3:-69442012 Msa0659130:three_prime_UTR
TCTTTGTAATATACCTGATC+AGG 0.443928 4_3:+69442523 None:intergenic
GGAAGGTGGATGGGTGTTGG+AGG 0.446955 4_3:-69443528 Msa0659130:intron
TTCCACAATCACTCCTGATC+AGG 0.448356 4_3:-69442536 Msa0659130:intron
TGCAACTTTAATGATAGTAA+TGG 0.449400 4_3:+69444084 None:intergenic
TCCACTTGTATCCATTGTGT+TGG 0.450555 4_3:-69441976 Msa0659130:three_prime_UTR
AAGAGAGCTTTACCAGGCTC+TGG 0.452031 4_3:-69444008 Msa0659130:CDS
TGATTCTCATGTGAGTCCTC+TGG 0.455246 4_3:-69444212 Msa0659130:CDS
GTAATGGGTCTAAACCATAA+TGG 0.465210 4_3:+69444100 None:intergenic
CAAAGGCAATATCTTTGTGT+TGG 0.468289 4_3:-69442161 Msa0659130:CDS
GGGATATTTGGAATTCCATC+TGG 0.474487 4_3:-69443855 Msa0659130:CDS
GTTGATGACAACATGAGAAT+AGG 0.478063 4_3:-69442193 Msa0659130:CDS
TTTATCCATGAAAGATTACT+AGG 0.478881 4_3:+69444145 None:intergenic
ACATGAGAATCATTCATTGA+TGG 0.480197 4_3:+69444223 None:intergenic
CAGAATAAATGTGTCTCATA+CGG 0.484189 4_3:-69441753 Msa0659130:three_prime_UTR
ACTGGAAGGTGGATGGGTGT+TGG 0.486174 4_3:-69443531 Msa0659130:intron
GCAGAACAATCTTCTGGCTA+TGG 0.491323 4_3:-69444064 Msa0659130:CDS
ACCTTCTCTAGTTCTAGAGT+TGG 0.492031 4_3:+69443771 None:intergenic
GACAAAATTACTTTCCGTGA+AGG 0.498911 4_3:+69442082 None:intergenic
TTCTATTACTGGAAGGTGGA+TGG 0.515531 4_3:-69443538 Msa0659130:intron
ATTTCTAACTTCTTGCCAGA+TGG 0.516677 4_3:+69443840 None:intergenic
AGATGCTACCTTCCAGAGCC+TGG 0.516686 4_3:+69443996 None:intergenic
TTTGGAAGCAATCTTGAATG+AGG 0.522835 4_3:+69442675 None:intergenic
TCTATTACTGGAAGGTGGAT+GGG 0.533432 4_3:-69443537 Msa0659130:intron
GAATAATGAAACAGGGTAGA+GGG 0.538460 4_3:+69444282 None:intergenic
AGAATAATGAAACAGGGTAG+AGG 0.550244 4_3:+69444281 None:intergenic
GTGTGGAGAGCTTAGTATTG+AGG 0.553989 4_3:-69442698 Msa0659130:CDS
GTGATTTCTAGCCATCCCTC+TGG 0.559113 4_3:+69442359 None:intergenic
GAAGTTTGTTTCGACATAGT+GGG 0.564277 4_3:-69442011 Msa0659130:three_prime_UTR
TACCTGATCAGGAGTGATTG+TGG 0.569292 4_3:+69442534 None:intergenic
ACAATGGATACAAGTGGAAG+GGG 0.569905 4_3:+69441981 None:intergenic
CACAATGGATACAAGTGGAA+GGG 0.576982 4_3:+69441980 None:intergenic
TTGGGCATCTTCAATCCAGA+GGG 0.577853 4_3:-69442374 Msa0659130:CDS
ACCAACTCTAGAACTAGAGA+AGG 0.579053 4_3:-69443772 Msa0659130:intron
GAGCTTTACCAGGCTCTGGA+AGG 0.579893 4_3:-69444004 Msa0659130:intron
TGATCAAGTTCAATGCAAAA+GGG 0.581171 4_3:-69442732 Msa0659130:CDS
ATGACAACATGAGAATAGGA+AGG 0.590421 4_3:-69442189 Msa0659130:CDS
ATGAAACATGGCCAACACAA+TGG 0.596822 4_3:+69441965 None:intergenic
TGAAACAGGGTAGAGGGTCA+TGG 0.600960 4_3:+69444288 None:intergenic
GAAGAAAAGAGAGCTTTACC+AGG 0.603570 4_3:-69444014 Msa0659130:CDS
TTAGTTGAAGATGAAGCACT+TGG 0.610602 4_3:-69444040 Msa0659130:CDS
TCAGACTATTGATAAAGCCA+AGG 0.616602 4_3:-69443422 Msa0659130:intron
GTTGGGCATCTTCAATCCAG+AGG 0.618538 4_3:-69442375 Msa0659130:CDS
GCCAACACAATGGATACAAG+TGG 0.626649 4_3:+69441975 None:intergenic
ACACAATGGATACAAGTGGA+AGG 0.627896 4_3:+69441979 None:intergenic
TGACAACATGAGAATAGGAA+GGG 0.637950 4_3:-69442188 Msa0659130:CDS
CTTTCCGTGAAGGAAACATG+TGG 0.639124 4_3:+69442092 None:intergenic
GCATCTTCAATCCAGAGGGA+TGG 0.641660 4_3:-69442370 Msa0659130:CDS
GATAGGTCTATCGAGACATG+TGG 0.649263 4_3:+69444434 None:intergenic
TGTTTGAAGGAATCAACAGA+GGG 0.669440 4_3:-69443875 Msa0659130:intron
ACTTGAAAGAACAACGTGCG+AGG 0.669525 4_3:-69444319 Msa0659130:five_prime_UTR
AGAATAGGAAGGGATGACAA+AGG 0.678331 4_3:-69442178 Msa0659130:CDS
CTAACATGTACATAGTTCCA+CGG 0.686297 4_3:-69444376 Msa0659130:five_prime_UTR
AAAGGGTTGATATTGTTGTG+TGG 0.686655 4_3:-69442715 Msa0659130:CDS
GTGTTTGAAGGAATCAACAG+AGG 0.697719 4_3:-69443876 Msa0659130:intron
TTCATGGTTCTACAAACCAG+AGG 0.699055 4_3:+69444196 None:intergenic
ATACTTCCTAGAATGAAACA+TGG 0.703196 4_3:+69441953 None:intergenic
ATCCATGAAAGATTACTAGG+TGG 0.706915 4_3:+69444148 None:intergenic
AACAGGGTAGAGGGTCATGG+TGG 0.709521 4_3:+69444291 None:intergenic
AAATACAGAATAATGAAACA+GGG 0.717835 4_3:+69444275 None:intergenic
TTTGAAAATGAAGAGCAAAG+CGG 0.731147 4_3:-69442761 Msa0659130:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATGATATTTTGTT+GGG - chr4_3:69443801-69443820 Msa0659130:CDS 10.0%
!!! TATTTGATTTTTTCTAATCA+AGG + chr4_3:69441790-69441809 None:intergenic 15.0%
!! GTTTAAAAAAATTGTGATTT+AGG + chr4_3:69442593-69442612 None:intergenic 15.0%
!! ACAAAATCTACATTAAATTA+TGG + chr4_3:69443148-69443167 None:intergenic 15.0%
!! TATTGAGTTTAATTAAACAT+TGG - chr4_3:69443401-69443420 Msa0659130:intron 15.0%
!! AAGTTAAATAAGTAGTTATT+TGG + chr4_3:69443597-69443616 None:intergenic 15.0%
!! AGGAAAAATTAATTAAACAT+AGG + chr4_3:69443749-69443768 None:intergenic 15.0%
!!! GAAAAATTATGATATTTTGT+TGG - chr4_3:69443800-69443819 Msa0659130:CDS 15.0%
!!! ATTTTTTCTAATCAAGGTTT+TGG + chr4_3:69441784-69441803 None:intergenic 20.0%
!!! TTTCAAGTTTTCTGATAAAA+GGG + chr4_3:69441862-69441881 None:intergenic 20.0%
!! AAATACAGAATAATGAAACA+GGG + chr4_3:69441921-69441940 None:intergenic 20.0%
!! TATTCTGTATTTGATCTTAA+AGG - chr4_3:69441929-69441948 Msa0659130:three_prime_UTR 20.0%
!!! AAAGAGTAATTTGTTTGAAA+TGG - chr4_3:69442284-69442303 Msa0659130:intron 20.0%
!!! AAGAGTAATTTGTTTGAAAT+GGG - chr4_3:69442285-69442304 Msa0659130:intron 20.0%
!!! TCAATTGTTTTACAAATTAG+AGG - chr4_3:69443060-69443079 Msa0659130:intron 20.0%
!!! CAATTGTTTTACAAATTAGA+GGG - chr4_3:69443061-69443080 Msa0659130:intron 20.0%
!!! TGTCTCTATTTTTTTTTTCT+TGG - chr4_3:69444351-69444370 Msa0659130:five_prime_UTR 20.0%
!!! GTCTCTATTTTTTTTTTCTT+GGG - chr4_3:69444352-69444371 Msa0659130:five_prime_UTR 20.0%
!!! CTTTCAAGTTTTCTGATAAA+AGG + chr4_3:69441863-69441882 None:intergenic 25.0%
! CAAATACAGAATAATGAAAC+AGG + chr4_3:69441922-69441941 None:intergenic 25.0%
! TTGAAGTTTCATGATATTCA+TGG + chr4_3:69442016-69442035 None:intergenic 25.0%
! ATCATGAAACTTCAAAGATT+TGG - chr4_3:69442021-69442040 Msa0659130:three_prime_UTR 25.0%
! TTTATCCATGAAAGATTACT+AGG + chr4_3:69442051-69442070 None:intergenic 25.0%
! GCAACTTTAATGATAGTAAT+GGG + chr4_3:69442111-69442130 None:intergenic 25.0%
! TGCAACTTTAATGATAGTAA+TGG + chr4_3:69442112-69442131 None:intergenic 25.0%
! GAAGTTAGAAATTGAAAGTT+TGG - chr4_3:69442364-69442383 Msa0659130:CDS 25.0%
!!! CAATGTTTTTTATGTCTTTG+CGG + chr4_3:69442561-69442580 None:intergenic 25.0%
! CATAAAAAACATTGATATCG+AGG - chr4_3:69442567-69442586 Msa0659130:intron 25.0%
!! TCATGTTATGTTTCTATTAC+TGG - chr4_3:69442644-69442663 Msa0659130:intron 25.0%
!! TTATAGCACTATCTCTATTT+TGG - chr4_3:69442693-69442712 Msa0659130:CDS 25.0%
!! TATAGCACTATCTCTATTTT+GGG - chr4_3:69442694-69442713 Msa0659130:CDS 25.0%
! TCTCTAAGTCAAAAGAAAAA+GGG + chr4_3:69442837-69442856 None:intergenic 25.0%
! ATCTCTAAGTCAAAAGAAAA+AGG + chr4_3:69442838-69442857 None:intergenic 25.0%
! AAAAATACGAACTTTGTGAT+TGG + chr4_3:69442914-69442933 None:intergenic 25.0%
!! AATTATGGACCATATGATTT+TGG + chr4_3:69443133-69443152 None:intergenic 25.0%
! AAAATACTAAGCTTGAAATC+TGG - chr4_3:69443185-69443204 Msa0659130:intron 25.0%
!!! ACTTTCTACGATAGTTTTTT+CGG + chr4_3:69443247-69443266 None:intergenic 25.0%
! AATAGACGAGATTATTATGT+TGG + chr4_3:69443372-69443391 None:intergenic 25.0%
!! TATCATAATTTTTCCGAAAC+AGG + chr4_3:69443794-69443813 None:intergenic 25.0%
! AAAACCAATCAACGAAAATT+AGG + chr4_3:69443864-69443883 None:intergenic 25.0%
! ATGTGGAAAACAAAAAAGAA+CGG + chr4_3:69444087-69444106 None:intergenic 25.0%
!! AAAGTAATTTTGTCGAAACA+TGG - chr4_3:69444120-69444139 Msa0659130:CDS 25.0%
! TTACTTAGCAAAAACAAAGA+AGG - chr4_3:69444409-69444428 Msa0659130:five_prime_UTR 25.0%
!!! TTCTAATCAAGGTTTTGGAT+AGG + chr4_3:69441779-69441798 None:intergenic 30.0%
!!! AAAAGGGTGTCTCAAAATTT+TGG + chr4_3:69441846-69441865 None:intergenic 30.0%
ACATGAGAATCATTCATTGA+TGG + chr4_3:69441973-69441992 None:intergenic 30.0%
TGGATAAACACTTCAAGATT+TGG - chr4_3:69442063-69442082 Msa0659130:three_prime_UTR 30.0%
TTGTGAGCTATTGTTAAAAC+TGG - chr4_3:69442249-69442268 Msa0659130:intron 30.0%
GTTAAAACTGGTTAACAAAG+TGG - chr4_3:69442261-69442280 Msa0659130:intron 30.0%
! GTTATGTTTCTATTACTGGA+AGG - chr4_3:69442648-69442667 Msa0659130:intron 30.0%
CTAAGAGACTTTATTGCATT+GGG - chr4_3:69442739-69442758 Msa0659130:CDS 30.0%
CTAGAAATTAAGAGCAAACA+CGG + chr4_3:69442962-69442981 None:intergenic 30.0%
! GTTTTACAAATTAGAGGGTT+TGG - chr4_3:69443066-69443085 Msa0659130:intron 30.0%
!!! AGTTTTTTCGGTTCTAATTC+TGG + chr4_3:69443235-69443254 None:intergenic 30.0%
TATCGTAGAAAGTGAACTAT+AGG - chr4_3:69443254-69443273 Msa0659130:intron 30.0%
GACTCAAACTTTAACAATGT+AGG + chr4_3:69443289-69443308 None:intergenic 30.0%
TTTGAAAATGAAGAGCAAAG+CGG - chr4_3:69443432-69443451 Msa0659130:CDS 30.0%
TGATCAAGTTCAATGCAAAA+GGG - chr4_3:69443461-69443480 Msa0659130:CDS 30.0%
! AGTAGGAGATTTAACTGTTT+TGG + chr4_3:69443539-69443558 None:intergenic 30.0%
TAAATCTCCTACTCTTTGTT+TGG - chr4_3:69443546-69443565 Msa0659130:intron 30.0%
TTCTACTTCAAATTCACAGA+GGG - chr4_3:69443615-69443634 Msa0659130:intron 30.0%
TCTTTGTAATATACCTGATC+AGG + chr4_3:69443673-69443692 None:intergenic 30.0%
! GTACATTTCCTTTTTGTTCT+TGG - chr4_3:69443698-69443717 Msa0659130:intron 30.0%
! TTGATTAGCCAAGAACAAAA+AGG + chr4_3:69443709-69443728 None:intergenic 30.0%
! GTATCCTAATTTTCGTTGAT+TGG - chr4_3:69443857-69443876 Msa0659130:CDS 30.0%
ATACTTCCTAGAATGAAACA+TGG + chr4_3:69444243-69444262 None:intergenic 30.0%
CAGAATAAATGTGTCTCATA+CGG - chr4_3:69444440-69444459 Msa0659130:five_prime_UTR 30.0%
CTAACATGTACATAGTTCCA+CGG - chr4_3:69441817-69441836 Msa0659130:three_prime_UTR 35.0%
GAATAATGAAACAGGGTAGA+GGG + chr4_3:69441914-69441933 None:intergenic 35.0%
AGAATAATGAAACAGGGTAG+AGG + chr4_3:69441915-69441934 None:intergenic 35.0%
ATCCATGAAAGATTACTAGG+TGG + chr4_3:69442048-69442067 None:intergenic 35.0%
!! GTAATGGGTCTAAACCATAA+TGG + chr4_3:69442096-69442115 None:intergenic 35.0%
AAAGTTGCAGAACAATCTTC+TGG - chr4_3:69442123-69442142 Msa0659130:exon 35.0%
! TTAGTTGAAGATGAAGCACT+TGG - chr4_3:69442153-69442172 Msa0659130:CDS 35.0%
GGGTAAACAAATGTGTTTGA+AGG - chr4_3:69442305-69442324 Msa0659130:intron 35.0%
TGTTTGAAGGAATCAACAGA+GGG - chr4_3:69442318-69442337 Msa0659130:intron 35.0%
ATTTCTAACTTCTTGCCAGA+TGG + chr4_3:69442356-69442375 None:intergenic 35.0%
!! TCAAGGCTTTAAAATCGACA+CGG - chr4_3:69442454-69442473 Msa0659130:intron 35.0%
! ATGTTTCTATTACTGGAAGG+TGG - chr4_3:69442651-69442670 Msa0659130:intron 35.0%
!!! TCTCTATTTTGGGATCAAGA+AGG - chr4_3:69442704-69442723 Msa0659130:CDS 35.0%
CCAATGCAATAAAGTCTCTT+AGG + chr4_3:69442741-69442760 None:intergenic 35.0%
CCTAAGAGACTTTATTGCAT+TGG - chr4_3:69442738-69442757 Msa0659130:CDS 35.0%
TCAGACTATTGATAAAGCCA+AGG - chr4_3:69442771-69442790 Msa0659130:intron 35.0%
!! TATGATTTTGGTCAGACAGA+CGG + chr4_3:69443121-69443140 None:intergenic 35.0%
TCTGTCTGACCAAAATCATA+TGG - chr4_3:69443121-69443140 Msa0659130:intron 35.0%
!! CTGGATTGTTTGATTTTGAC+CGG - chr4_3:69443204-69443223 Msa0659130:intron 35.0%
GTGATCAAGTTCAATGCAAA+AGG - chr4_3:69443460-69443479 Msa0659130:CDS 35.0%
!! AAAGGGTTGATATTGTTGTG+TGG - chr4_3:69443478-69443497 Msa0659130:CDS 35.0%
TTTGGAAGCAATCTTGAATG+AGG + chr4_3:69443521-69443540 None:intergenic 35.0%
AAAGCAACCAAACAAAGAGT+AGG + chr4_3:69443556-69443575 None:intergenic 35.0%
CTTCTACTTCAAATTCACAG+AGG - chr4_3:69443614-69443633 Msa0659130:intron 35.0%
!! GTTGATGACAACATGAGAAT+AGG - chr4_3:69444000-69444019 Msa0659130:intron 35.0%
ATGACAACATGAGAATAGGA+AGG - chr4_3:69444004-69444023 Msa0659130:intron 35.0%
TGACAACATGAGAATAGGAA+GGG - chr4_3:69444005-69444024 Msa0659130:CDS 35.0%
CAAAGGCAATATCTTTGTGT+TGG - chr4_3:69444032-69444051 Msa0659130:CDS 35.0%
! TTTTCCACATGTTTCCTTCA+CGG - chr4_3:69444097-69444116 Msa0659130:CDS 35.0%
GACAAAATTACTTTCCGTGA+AGG + chr4_3:69444114-69444133 None:intergenic 35.0%
! AATTTTGTCGAAACATGGTC+AGG - chr4_3:69444125-69444144 Msa0659130:CDS 35.0%
! TTGTAGACACTTTTATCAGC+TGG - chr4_3:69444154-69444173 Msa0659130:CDS 35.0%
! TGTAGACACTTTTATCAGCT+GGG - chr4_3:69444155-69444174 Msa0659130:CDS 35.0%
! GAAGTTTGTTTCGACATAGT+GGG - chr4_3:69444182-69444201 Msa0659130:CDS 35.0%
!! TCTCAAAATTTTGGTGACCG+TGG + chr4_3:69441837-69441856 None:intergenic 40.0%
! TTCATGGTTCTACAAACCAG+AGG + chr4_3:69442000-69442019 None:intergenic 40.0%
GACCACCTAGTAATCTTTCA+TGG - chr4_3:69442043-69442062 Msa0659130:three_prime_UTR 40.0%
!! GATTTGGTGAGAAGCCATTA+TGG - chr4_3:69442079-69442098 Msa0659130:three_prime_UTR 40.0%
GAAGAAAAGAGAGCTTTACC+AGG - chr4_3:69442179-69442198 Msa0659130:CDS 40.0%
GTGTTTGAAGGAATCAACAG+AGG - chr4_3:69442317-69442336 Msa0659130:intron 40.0%
GGAATCAACAGAGGGATATT+TGG - chr4_3:69442326-69442345 Msa0659130:intron 40.0%
! GGGATATTTGGAATTCCATC+TGG - chr4_3:69442338-69442357 Msa0659130:intron 40.0%
!! TCTAGTTCTAGAGTTGGTTC+TGG + chr4_3:69442419-69442438 None:intergenic 40.0%
!! ACCAACTCTAGAACTAGAGA+AGG - chr4_3:69442421-69442440 Msa0659130:intron 40.0%
!! ACCTTCTCTAGTTCTAGAGT+TGG + chr4_3:69442425-69442444 None:intergenic 40.0%
GAGAAGGTAACTTCATGTCA+AGG - chr4_3:69442437-69442456 Msa0659130:intron 40.0%
TGCCACGACTCTTGATATTA+TGG - chr4_3:69442485-69442504 Msa0659130:intron 40.0%
CTCCATAATATCAAGAGTCG+TGG + chr4_3:69442490-69442509 None:intergenic 40.0%
TGGAGAGTTCTCGTTAAATG+TGG - chr4_3:69442505-69442524 Msa0659130:intron 40.0%
! CTCGTTAAATGTGGTTGATG+CGG - chr4_3:69442514-69442533 Msa0659130:intron 40.0%
TTCTATTACTGGAAGGTGGA+TGG - chr4_3:69442655-69442674 Msa0659130:intron 40.0%
TCTATTACTGGAAGGTGGAT+GGG - chr4_3:69442656-69442675 Msa0659130:intron 40.0%
GGATCAAGAAGGACAAAGTT+AGG - chr4_3:69442715-69442734 Msa0659130:CDS 40.0%
AGTGCGTTGTATTTGTACCT+TGG + chr4_3:69442791-69442810 None:intergenic 40.0%
! GGTTCTAATTCTGGATTGTC+CGG + chr4_3:69443226-69443245 None:intergenic 40.0%
! TTGAGTCTTTTAGCACATGC+AGG - chr4_3:69443302-69443321 Msa0659130:intron 40.0%
! TGAGTCTTTTAGCACATGCA+GGG - chr4_3:69443303-69443322 Msa0659130:intron 40.0%
!! CACAGTTGATGAACCTGTTT+CGG - chr4_3:69443778-69443797 Msa0659130:CDS 40.0%
AGAATAGGAAGGGATGACAA+AGG - chr4_3:69444015-69444034 Msa0659130:CDS 40.0%
! CGAAGTTTGTTTCGACATAG+TGG - chr4_3:69444181-69444200 Msa0659130:CDS 40.0%
ACAATGGATACAAGTGGAAG+GGG + chr4_3:69444215-69444234 None:intergenic 40.0%
CACAATGGATACAAGTGGAA+GGG + chr4_3:69444216-69444235 None:intergenic 40.0%
ACACAATGGATACAAGTGGA+AGG + chr4_3:69444217-69444236 None:intergenic 40.0%
TCCACTTGTATCCATTGTGT+TGG - chr4_3:69444217-69444236 Msa0659130:CDS 40.0%
ATGAAACATGGCCAACACAA+TGG + chr4_3:69444231-69444250 None:intergenic 40.0%
TGTTGGCCATGTTTCATTCT+AGG - chr4_3:69444234-69444253 Msa0659130:exon 40.0%
GATAGGTCTATCGAGACATG+TGG + chr4_3:69441762-69441781 None:intergenic 45.0%
ACTTGAAAGAACAACGTGCG+AGG - chr4_3:69441874-69441893 Msa0659130:three_prime_UTR 45.0%
TGATTCTCATGTGAGTCCTC+TGG - chr4_3:69441981-69442000 Msa0659130:three_prime_UTR 45.0%
! GCAGAACAATCTTCTGGCTA+TGG - chr4_3:69442129-69442148 Msa0659130:exon 45.0%
!! TCTAGAGTTGGTTCTGGAGT+TGG + chr4_3:69442413-69442432 None:intergenic 45.0%
GGTTTAGATGTGGCTAACTG+CGG + chr4_3:69443100-69443119 None:intergenic 45.0%
TCAGACAGACGGTTTAGATG+TGG + chr4_3:69443110-69443129 None:intergenic 45.0%
GTGTGGAGAGCTTAGTATTG+AGG - chr4_3:69443495-69443514 Msa0659130:CDS 45.0%
TTCCACAATCACTCCTGATC+AGG - chr4_3:69443657-69443676 Msa0659130:intron 45.0%
TACCTGATCAGGAGTGATTG+TGG + chr4_3:69443662-69443681 None:intergenic 45.0%
CATCAACTGTGCATGCAAGA+AGG + chr4_3:69443769-69443788 None:intergenic 45.0%
TTGGGCATCTTCAATCCAGA+GGG - chr4_3:69443819-69443838 Msa0659130:CDS 45.0%
CTTTCCGTGAAGGAAACATG+TGG + chr4_3:69444104-69444123 None:intergenic 45.0%
GCCAACACAATGGATACAAG+TGG + chr4_3:69444221-69444240 None:intergenic 45.0%
TGAAACAGGGTAGAGGGTCA+TGG + chr4_3:69441908-69441927 None:intergenic 50.0%
AAGAGAGCTTTACCAGGCTC+TGG - chr4_3:69442185-69442204 Msa0659130:CDS 50.0%
!! GGTTGATGCGGTGTCATAAG+CGG - chr4_3:69442526-69442545 Msa0659130:intron 50.0%
! GGTGTCATAAGCGGCTGTTA+TGG - chr4_3:69442535-69442554 Msa0659130:intron 50.0%
GTTGGGCATCTTCAATCCAG+AGG - chr4_3:69443818-69443837 Msa0659130:CDS 50.0%
GCATCTTCAATCCAGAGGGA+TGG - chr4_3:69443823-69443842 Msa0659130:CDS 50.0%
!! GTGATTTCTAGCCATCCCTC+TGG + chr4_3:69443837-69443856 None:intergenic 50.0%
AACAGGGTAGAGGGTCATGG+TGG + chr4_3:69441905-69441924 None:intergenic 55.0%
!! GAGCTTTACCAGGCTCTGGA+AGG - chr4_3:69442189-69442208 Msa0659130:CDS 55.0%
AGATGCTACCTTCCAGAGCC+TGG + chr4_3:69442200-69442219 None:intergenic 55.0%
ACTGGAAGGTGGATGGGTGT+TGG - chr4_3:69442662-69442681 Msa0659130:intron 55.0%
!! GGAAGGTGGATGGGTGTTGG+AGG - chr4_3:69442665-69442684 Msa0659130:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69441752 69444463 69441752 ID=Msa0659130;Name=Msa0659130
chr4_3 mRNA 69441752 69444463 69441752 ID=Msa0659130-mRNA-1;Parent=Msa0659130;Name=Msa0659130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=224|1|1|1|1|1|7|380|259
chr4_3 exon 69441752 69442219 69441752 ID=Msa0659130-mRNA-1:exon:20372;Parent=Msa0659130-mRNA-1
chr4_3 exon 69442359 69442432 69442359 ID=Msa0659130-mRNA-1:exon:20371;Parent=Msa0659130-mRNA-1
chr4_3 exon 69442537 69442581 69442537 ID=Msa0659130-mRNA-1:exon:20370;Parent=Msa0659130-mRNA-1
chr4_3 exon 69442672 69442770 69442672 ID=Msa0659130-mRNA-1:exon:20369;Parent=Msa0659130-mRNA-1
chr4_3 exon 69443423 69443545 69443423 ID=Msa0659130-mRNA-1:exon:20368;Parent=Msa0659130-mRNA-1
chr4_3 exon 69443773 69443888 69443773 ID=Msa0659130-mRNA-1:exon:20367;Parent=Msa0659130-mRNA-1
chr4_3 exon 69444005 69444463 69444005 ID=Msa0659130-mRNA-1:exon:20366;Parent=Msa0659130-mRNA-1
chr4_3 five_prime_UTR 69444240 69444463 69444240 ID=Msa0659130-mRNA-1:five_prime_utr;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69444005 69444239 69444005 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69443773 69443888 69443773 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69443423 69443545 69443423 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69442672 69442770 69442672 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69442537 69442581 69442537 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69442359 69442432 69442359 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 CDS 69442132 69442219 69442132 ID=Msa0659130-mRNA-1:cds;Parent=Msa0659130-mRNA-1
chr4_3 three_prime_UTR 69441752 69442131 69441752 ID=Msa0659130-mRNA-1:three_prime_utr;Parent=Msa0659130-mRNA-1
Gene Sequence

>Msa0659130

ATGAATGATTCTCATGTGAGTCCTCTGGTTTGTAGAACCATGAATATCATGAAACTTCAAAGATTTGGACCACCTAGTAATCTTTCATGGATAAACACTTCAAGATTTGGTGAGAAGCCATTATGGTTTAGACCCATTACTATCATTAAAGTTGCAGAACAATCTTCTGGCTATGGCTTAGTTGAAGATGAAGCACTTGGACAGAAGAAAAGAGAGCTTTACCAGGCTCTGGAAGGAATCAACAGAGGGATATTTGGAATTCCATCTGGCAAGAAGTTAGAAATTGAAAGTTTGGTGAAGCAGCTAGAATCTCAAAATCCAACTCCAGAACCAACTCTAGAACTAGAGAAGGTGGATGGGTGTTGGAGGCTTGTTTATAGCACTATCTCTATTTTGGGATCAAGAAGGACAAAGTTAGGCCTAAGAGACTTTATTGCATTGGGTGATTTCTTTCAGACTATTGATAAAGCCAAGAGCAAAGCGGTGAACGTGATCAAGTTCAATGCAAAAGGGTTGATATTGTTGTGTGGAGAGCTTAGTATTGAGGCCTCATTCAAGATTGCTTCCAAAACAAGGGTTGACATTAATTTTGAAAATTCCACAATCACTCCTGATCAGTTGATGAACCTGTTTCGGAAAAATTATGATATTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTAGAAATCACATATGTTGATGACAACATGAGAATAGGAAGGGATGACAAAGGCAATATCTTTGTGTTGGAAAGATTTGAAGATAATAGCAACTCGTAG

Protein sequence

>Msa0659130

MNDSHVSPLVCRTMNIMKLQRFGPPSNLSWINTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDEALGQKKRELYQALEGINRGIFGIPSGKKLEIESLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSRRTKLGLRDFIALGDFFQTIDKAKSKAVNVIKFNAKGLILLCGELSIEASFKIASKTRVDINFENSTITPDQLMNLFRKNYDILLGIFNPEGWLEITYVDDNMRIGRDDKGNIFVLERFEDNSNS*