AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626890


Find 349 sgRNAs with CRISPR-Local

Find 719 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr4_3 gene 6928745 6941384 6928745 ID=Msa0626890;Name=Msa0626890
chr4_3 mRNA 6928745 6941384 6928745 ID=Msa0626890-mRNA-1;Parent=Msa0626890;Name=Msa0626890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=349|1|1|1|0.95|0.91|24|331|1638
chr4_3 exon 6928745 6928812 6928745 ID=Msa0626890-mRNA-1:exon:2026;Parent=Msa0626890-mRNA-1
chr4_3 exon 6928889 6930642 6928889 ID=Msa0626890-mRNA-1:exon:2025;Parent=Msa0626890-mRNA-1
chr4_3 exon 6931020 6931101 6931020 ID=Msa0626890-mRNA-1:exon:2024;Parent=Msa0626890-mRNA-1
chr4_3 exon 6931191 6931303 6931191 ID=Msa0626890-mRNA-1:exon:2023;Parent=Msa0626890-mRNA-1
chr4_3 exon 6931746 6931877 6931746 ID=Msa0626890-mRNA-1:exon:2022;Parent=Msa0626890-mRNA-1
chr4_3 exon 6931956 6932139 6931956 ID=Msa0626890-mRNA-1:exon:2021;Parent=Msa0626890-mRNA-1
chr4_3 exon 6932245 6932378 6932245 ID=Msa0626890-mRNA-1:exon:2020;Parent=Msa0626890-mRNA-1
chr4_3 exon 6932844 6932948 6932844 ID=Msa0626890-mRNA-1:exon:2019;Parent=Msa0626890-mRNA-1
chr4_3 exon 6933031 6933132 6933031 ID=Msa0626890-mRNA-1:exon:2018;Parent=Msa0626890-mRNA-1
chr4_3 exon 6933235 6933327 6933235 ID=Msa0626890-mRNA-1:exon:2017;Parent=Msa0626890-mRNA-1
chr4_3 exon 6933412 6933729 6933412 ID=Msa0626890-mRNA-1:exon:2016;Parent=Msa0626890-mRNA-1
chr4_3 exon 6933913 6934014 6933913 ID=Msa0626890-mRNA-1:exon:2015;Parent=Msa0626890-mRNA-1
chr4_3 exon 6934109 6934171 6934109 ID=Msa0626890-mRNA-1:exon:2014;Parent=Msa0626890-mRNA-1
chr4_3 exon 6934402 6934870 6934402 ID=Msa0626890-mRNA-1:exon:2013;Parent=Msa0626890-mRNA-1
chr4_3 exon 6935169 6935323 6935169 ID=Msa0626890-mRNA-1:exon:2012;Parent=Msa0626890-mRNA-1
chr4_3 exon 6935883 6936383 6935883 ID=Msa0626890-mRNA-1:exon:2011;Parent=Msa0626890-mRNA-1
chr4_3 exon 6936595 6936636 6936595 ID=Msa0626890-mRNA-1:exon:2010;Parent=Msa0626890-mRNA-1
chr4_3 exon 6937084 6937215 6937084 ID=Msa0626890-mRNA-1:exon:2009;Parent=Msa0626890-mRNA-1
chr4_3 exon 6937706 6937770 6937706 ID=Msa0626890-mRNA-1:exon:2008;Parent=Msa0626890-mRNA-1
chr4_3 exon 6937866 6938198 6937866 ID=Msa0626890-mRNA-1:exon:2007;Parent=Msa0626890-mRNA-1
chr4_3 exon 6940368 6940440 6940368 ID=Msa0626890-mRNA-1:exon:2006;Parent=Msa0626890-mRNA-1
chr4_3 exon 6940587 6940679 6940587 ID=Msa0626890-mRNA-1:exon:2005;Parent=Msa0626890-mRNA-1
chr4_3 exon 6940778 6940842 6940778 ID=Msa0626890-mRNA-1:exon:2004;Parent=Msa0626890-mRNA-1
chr4_3 exon 6940966 6941384 6940966 ID=Msa0626890-mRNA-1:exon:2003;Parent=Msa0626890-mRNA-1
chr4_3 five_prime_UTR 6941036 6941384 6941036 ID=Msa0626890-mRNA-1:five_prime_utr;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6940966 6941035 6940966 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6940778 6940842 6940778 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6940587 6940679 6940587 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6940368 6940440 6940368 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6937866 6938198 6937866 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6937706 6937770 6937706 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6937084 6937215 6937084 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6936595 6936636 6936595 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6935883 6936383 6935883 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6935169 6935323 6935169 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6934402 6934870 6934402 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6934109 6934171 6934109 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6933913 6934014 6933913 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6933412 6933729 6933412 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6933235 6933327 6933235 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6933031 6933132 6933031 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6932844 6932948 6932844 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6932245 6932378 6932245 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6931956 6932139 6931956 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6931746 6931877 6931746 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6931191 6931303 6931191 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6931020 6931101 6931020 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 CDS 6929152 6930642 6929152 ID=Msa0626890-mRNA-1:cds;Parent=Msa0626890-mRNA-1
chr4_3 three_prime_UTR 6928889 6929151 6928889 ID=Msa0626890-mRNA-1:three_prime_utr;Parent=Msa0626890-mRNA-1
chr4_3 three_prime_UTR 6928745 6928812 6928745 ID=Msa0626890-mRNA-1:three_prime_utr;Parent=Msa0626890-mRNA-1
Gene Sequence

>Msa0626890

ATGGCCCCAAAATCAGGGAAAGGAAAAACAAATAAAGCTAAGACAGAGAAGAAGAAAAAGGAGGAGAAAGCTGTGGCACCTTCTCTTGTAGACATTATTGTGGTAACTCCTTATGATTCACAAATTGTATTGAAGGGTATCTCTACTGATAAGATACTTGATGTGAGGAAGCTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAACTATTCTTTATCTCATGAGGTTAAAGGTCAGAGATTAAATGACAGAGTTGAAGTTGTTACCCTAAAGCCATGTCTACTAAGAATGGTTGAAGAGAATTACAATGAAGAATCTCAAGCAACTACACACGTGCGAAGGTTATTGGACATTATAGCCTGCACAACAAAATTCGGAAAGCCCAAACGTAACATAGCAGGCCCAGACTCATCAAAGCCCAAGAAAAACGGAAAAGCCCATAATCAAAACAAGAGCGGTTTGAGCCCACCCGTAACACCGAATGGAGAAACCCGGGTCGGGTCACCAATGTCGGAGCCGCCGGCGTCGCCGATATCGGAGAATGTGGGAATGGTGGCGATTCATCCGACGCCGAAGTTGTCGGATTTTTATGAGTTCTTTTCATTTTCGAATCTCACTCCTCCGATTTTGCATTTGAAGAAATGTGAACTGAAGGAAGAAGATGACAGAGGCAAAGGAGATTACTTTCAGCTTCAGGTTAAAATCAGCAATGGGAAAGTAATAGAAGTGGTTGCTTCAGAGAAAGGCTTTTACAGTGTTGGAAAGCTGTCTCTACAGAGTCACACATTGGTTGATCTTCTGCAACAGCTCAGCAGAGGTTTTGCTAATGCTTATGGATCATTAATGAAAGCTTTTGCGGATCGTAACAAGTTTGGCAATCTTCCATATGGACTCCGATCGAATACATGGCTAGTTGCTCCATCCGTTGGTGAATCTCTTTCAAACTTTCCAGCTCTACCTGCTGAGGACGAAAACTGGGGTGGCAATGGTGGTGGCCAGGGAAGAAATGGAGAATATGAACGTCGACCATGGGCAACAGATTTTGAAATTTTGGCTTCTCTTCCTTCCAAAACTGAGGAGGAGAGGGTGATCAGAGACCGAAAAGCTTTTCTACTTCATAATCAGTTTGTTGATACATCGATATTTAAGGCTGTTGCAGCTATACAGCATGTGATGGAGTCCAAGTCTAGTATGAATTCTTCTCCGGGTTCTGTTATGCACCGAGATCAAGTGGGAGACTTATCCATTGTAGTTGAACGTGGTGGAAATGGAAAGTTTGATTCTACACTGAATGAATCGAGTCAGCATAATGACGATGTTCAGAAGAATTTAATCAAAGGGTTGTCTGCAGATGAAAGTGTCACTGTTAATGACACTTCTTCCTTGGCCGTAGTTGTTGTTCACCACTGTGGATATACAGCTACAGTGAAGGCTGTTGGTAATGCGAATGCAAGGAAACCTAAAGTTCAGGATATCGAAATAGATGATCAACCAGAAGGAGGCGCAAATGCTCTTAACATCAATAGTCTGAGGGCACTGCTTCACAAATCTGGAGCTGATTCATCAGAAGGGACTTTGACGTCCTTGTCAAATTTTGATGACTTGGATGCTTCTAAAGATCTTGTTAGGAAGGTGGTTGAGGAATCCATCGAAAAGATAAAGGAAGAGCCAAGTGTTTCAAAACGGTCGATTCGATGGGAACTTGGTTCTTCTTGGATGCAGCATCTGCAAAAACAGGAAAATTCAACCGATGGCAGTTCCAATAACAAGGATGGAAGTAATGTCGAGCCAGCCGTGAAGGGTCTTGGAAAGCAATTTAAATTATTGAAGAAGAGGGAGAAGAAACCAAGTGACATAAATTGTGCAGATTCTGTGGAGCAAAATAACGATGAGCCAAATAACGATGAACCAAGTAGTTTGAATGAATTAGAGAAACTACTTTCTCCAGAAGCCTTTTTGCGTCTCAAAGAATCCGGATCTGGTCTTCATATGAAGACGGTGGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGTTACGGACTTTGGATCACTTGAACTTTCTCCTGTTGATGGTCGTACACTTACTGATTTCATGCATTTAAGAGGACTGAAGATGGGATCTTTGGGTGAAGTGGTTAAACTTTCAGAGAATCTTCCACACATACAATCACTTTGTATTCATGAGATGATTACTCGAGCATTCAAGCATCTACTTAAAGCAGTCATTGCTTCTGTAGACAATGCAGCAGATTTACCTTCAGTCATTGCCTCGACACTGAATTTTTTTCTTGGAGGGTGTCAAACTGAAGATACAGACCAAACTTTGGGTGATGATTATCATCTCAAAATTCATTGGTTACGTATGTTTTTGTCAAAAAGATTTGGATGGACATTAAAAGATGAATTTCAACATTTGAGAAAGTTATCTATTCTTAGAGGGCTCTGTCACAAGGTTGGATTAGAATTGTTCCCTAGAGATTATGACATGGAGTCCCCTAAGCCCTTTGGAAAGTATGATATTATCAGCCTTGTTCCCGTTTGCAAGCATGTGGGATGCTCCTCAATAGATGGACGCAATTTATTGGAATCATCGAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTTAGTTATGGAACAAAGGCATTAGCAAAGATGATGACTGTTTGTGGTCCATATCATCGAAATACTGCAAGTGCGTATAGTCTTCTTGCTGTGGTTCTCTACCACACAGGAGATTTTAACCAGGCCACCATTTATCAGCAAAAGGCGTTGGATATAAATGAGAGGGAGCTTGGACTTGACCATCCTGACACAATGAAAAGCTATGGGGATCTTTCTGTTTTCTATTACCGTCTGCAACATATTGAGCTGGCTCTGAAGTACGTTAATCGCGCTCTCTTCCTCCTACATTTCACATGCGGTCTGTCTCATCCAAATACAGCTGCTACATATATAAATGTTGCTATGATGGAAGAAGGCATGGGAAATGTTCATGTGGCACTTCGGTACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTGGGAGCAGATCATATACAGACTGCTGCAAGCTATCATGCCATAGCCATAGCACTTTCATTGATGGAAGCATATTCTCTGAGTGTGCAACATGAGCAAACTACACTTAAGATACTTCAGGCGAAGCTTGGCACAGAAGATCTTCGAACTCAGGATGCGGCTGCATGGCTAGAATATTTTGAATCAAAAGCTATAGAGCAGCAAGAAGCAGCAAAAAATGGAACTCCAAAGACAGACACATCCATTGCAAGTAAAGGTCACCTTAGTGTGTCAGATCTCCTGGATTTTATTAGTCCTGACAACGATTCAAAGGGAAATGATGCTCAACGGAAACAAAGGCGTCCAAAGATACTTCCAGTAAGTGATAACAACTCTCAAGAACACGATGATGCTGCAATAGTTGATGATGTCGTTATTGTTGACAATGCAAAAGATGCCACAAAAGCAGTAGAAGGCAAAATAGAAGAAACAAAAGCCAAACATGGAACCGAAGAACCAAAAAAAATTGTTGATCTCAGCATGCACAAGCCAGTGGTGACAGTTGAAGCTGTTTATGAGACATCATCTGATGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGTTCAGGTAACGCTGCTAATCGCAAGTCTGGACGCAGACAACGGCCTCTTCTATCAAAGCTCACTGTTAATGGTTCTGATAATCACATGTACAAGGAAGCCAGTTACAGGAATGACACAACCCTGCACCAAAAAGCAGCTCCAAAAGTAGCTTCAGCTATGTTATCTCCATCTAGAAAATCAAAAACACCAAAAGCTTTGTCATCTAAAATTTCATCAACTCCAGCATCATTGAGTTCTTTGGCCTCAAAGTCTATATCTTACAAAGAAGTCGCTGCTGCACCACCAGGTACAGTTTTAAAGCCATTGTTGGAAAAAACCGAGACAGAAAAGGTAAATGATGAAAATGAGATGCCGAAAAATGAAGGTTCTATCGAAACTTCTAATGCTGATACAGTTCCACAAAAAGATGAAAAAGAACCTTCTGATGCTGATACAGATCCACAACAAGATGAATCTGAACAAGATAACTCTTCATCAGAACTTGAGAAGGTTTCCCCTTCATCTGATCAAGCAAAATCTTCCGAAACAAATGGAAGCAAGCTTTCTGCTGCAGCCAAACCTTTCAGCCCAGGAACGTTGTCCGCGTCTCGCCATTTAAGTCCAGTTCCTCTCGCGAGCATTTATGATGCAAATGGGAGTCAAGGCATTCTTGTAGAGCCTGTTCTTCCTCCTGCTGCTGCCAGGGTCCCTTGTGGCCCTAGATCACCGTTGTATTACAGAACCAATTATACATTCCGCATGAAACACAGTTCGACCAAAATAAGGGAAATGAGTGGATCAGGTGGTCCGAAAATTATGAATCCACATGCTCCTGAGTTTGTTCCAAGAAGTGCTTCTCAAGTAGAAAATGGTGAAAAGAACAGTGCCTCCAAAAACTGTCTTTCTGAATCCGAGAAGTCAGAGATAGCAAGGCAGATATTGCTGAGTTTTCTAGTGAAGTCTGTTCATCAAAATGCTGATGCTGTGGATGAGCCTAAAGTTAGTGAAGGAAAAGTTGAGAACTTTGAAAACTCTTCTGATGAAGTAGCTAAAGACAGCGCTGTCATAAAAATAATGTACGGTACTGAGGAAAAGAATAAGACAGTAGTTAATTCCAGCGATGACAGTGAAGAGCAGGACAATTTAGATGGTGAAGGATTTGTAGTTGTCACAAACAGGAGAAAAAGCAGGCAAAAAACCACAAATGGAGTCGCTGAATTGTACAACCAGCCGTCAATTTGTGCTTCGGTTCGTTGA

Protein sequence

>Msa0626890

MAPKSGKGKTNKAKTEKKKKEEKAVAPSLVDIIVVTPYDSQIVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEVKGQRLNDRVEVVTLKPCLLRMVEENYNEESQATTHVRRLLDIIACTTKFGKPKRNIAGPDSSKPKKNGKAHNQNKSGLSPPVTPNGETRVGSPMSEPPASPISENVGMVAIHPTPKLSDFYEFFSFSNLTPPILHLKKCELKEEDDRGKGDYFQLQVKISNGKVIEVVASEKGFYSVGKLSLQSHTLVDLLQQLSRGFANAYGSLMKAFADRNKFGNLPYGLRSNTWLVAPSVGESLSNFPALPAEDENWGGNGGGQGRNGEYERRPWATDFEILASLPSKTEEERVIRDRKAFLLHNQFVDTSIFKAVAAIQHVMESKSSMNSSPGSVMHRDQVGDLSIVVERGGNGKFDSTLNESSQHNDDVQKNLIKGLSADESVTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNINSLRALLHKSGADSSEGTLTSLSNFDDLDASKDLVRKVVEESIEKIKEEPSVSKRSIRWELGSSWMQHLQKQENSTDGSSNNKDGSNVEPAVKGLGKQFKLLKKREKKPSDINCADSVEQNNDEPNNDEPSSLNELEKLLSPEAFLRLKESGSGLHMKTVDELINMAHKFYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHIQSLCIHEMITRAFKHLLKAVIASVDNAADLPSVIASTLNFFLGGCQTEDTDQTLGDDYHLKIHWLRMFLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFPRDYDMESPKPFGKYDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGTEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKTDTSIASKGHLSVSDLLDFISPDNDSKGNDAQRKQRRPKILPVSDNNSQEHDDAAIVDDVVIVDNAKDATKAVEGKIEETKAKHGTEEPKKIVDLSMHKPVVTVEAVYETSSDEGWQEANSKGRSGNAANRKSGRRQRPLLSKLTVNGSDNHMYKEASYRNDTTLHQKAAPKVASAMLSPSRKSKTPKALSSKISSTPASLSSLASKSISYKEVAAAPPGTVLKPLLEKTETEKVNDENEMPKNEGSIETSNADTVPQKDEKEPSDADTDPQQDESEQDNSSSELEKVSPSSDQAKSSETNGSKLSAAAKPFSPGTLSASRHLSPVPLASIYDANGSQGILVEPVLPPAAARVPCGPRSPLYYRTNYTFRMKHSSTKIREMSGSGGPKIMNPHAPEFVPRSASQVENGEKNSASKNCLSESEKSEIARQILLSFLVKSVHQNADAVDEPKVSEGKVENFENSSDEVAKDSAVIKIMYGTEEKNKTVVNSSDDSEEQDNLDGEGFVVVTNRRKSRQKTTNGVAELYNQPSICASVR*