Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631450 | XP_013454956.1 | 98.193 | 166 | 3 | 0 | 2 | 167 | 116 | 281 | 1.82e-112 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631450 | sp|P93394|UPP_TOBAC | 81.928 | 166 | 30 | 0 | 2 | 167 | 59 | 224 | 1.48e-99 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631450 | A0A072UGW9 | 98.193 | 166 | 3 | 0 | 2 | 167 | 116 | 281 | 8.69e-113 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631450 | Msa0709760 | 0.820269 | 7.498634e-53 | -8.615850e-47 |
| Msa0631450 | Msa0813320 | -0.802852 | 4.609553e-49 | -8.615850e-47 |
| Msa0631450 | Msa1188940 | 0.802118 | 6.529973e-49 | -8.615850e-47 |
| Msa0631450 | Msa1284520 | 0.821761 | 3.399523e-53 | -8.615850e-47 |
| Msa0425940 | Msa0631450 | 0.827634 | 1.403757e-54 | -8.615850e-47 |
| Msa0426020 | Msa0631450 | 0.802332 | 5.899642e-49 | -8.615850e-47 |
| Msa0426160 | Msa0631450 | 0.824567 | 7.527729e-54 | -8.615850e-47 |
| Msa0434940 | Msa0631450 | 0.802765 | 4.802608e-49 | -8.615850e-47 |
| Msa0267760 | Msa0631450 | 0.800156 | 1.645068e-48 | -8.615850e-47 |
| Msa0280900 | Msa0631450 | 0.812151 | 4.897837e-51 | -8.615850e-47 |
| Msa0526710 | Msa0631450 | 0.801462 | 8.902336e-49 | -8.615850e-47 |
| Msa0527600 | Msa0631450 | 0.812519 | 4.069391e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631450 | MtrunA17_Chr4g0008941 | 98.193 | 166 | 3 | 0 | 2 | 167 | 116 | 281 | 1.67e-116 | 331 |
| Msa0631450 | MtrunA17_Chr7g0225691 | 31.507 | 146 | 98 | 2 | 22 | 167 | 329 | 472 | 1.85e-17 | 78.6 |
| Msa0631450 | MtrunA17_Chr4g0057631 | 28.916 | 166 | 114 | 3 | 2 | 167 | 290 | 451 | 1.38e-16 | 75.9 |
| Msa0631450 | MtrunA17_Chr5g0447081 | 29.197 | 137 | 95 | 2 | 31 | 167 | 333 | 467 | 3.18e-15 | 72.0 |
| Msa0631450 | MtrunA17_Chr3g0102981 | 29.927 | 137 | 94 | 2 | 31 | 167 | 331 | 465 | 1.09e-14 | 70.5 |
| Msa0631450 | MtrunA17_Chr6g0457931 | 29.197 | 137 | 95 | 2 | 31 | 167 | 198 | 332 | 5.81e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631450 | AT3G53900.1 | 73.494 | 166 | 44 | 0 | 2 | 167 | 60 | 225 | 2.76e-89 | 260 |
| Msa0631450 | AT3G53900.2 | 73.494 | 166 | 44 | 0 | 2 | 167 | 125 | 290 | 1.03e-88 | 261 |
| Msa0631450 | AT5G40870.1 | 29.878 | 164 | 112 | 3 | 4 | 167 | 321 | 481 | 5.31e-17 | 77.8 |
| Msa0631450 | AT4G26510.3 | 29.518 | 166 | 110 | 4 | 4 | 167 | 306 | 466 | 1.02e-16 | 77.0 |
| Msa0631450 | AT4G26510.2 | 29.518 | 166 | 110 | 4 | 4 | 167 | 306 | 466 | 1.02e-16 | 77.0 |
| Msa0631450 | AT4G26510.4 | 29.518 | 166 | 110 | 4 | 4 | 167 | 306 | 466 | 1.02e-16 | 77.0 |
| Msa0631450 | AT4G26510.1 | 29.518 | 166 | 110 | 4 | 4 | 167 | 306 | 466 | 1.02e-16 | 77.0 |
| Msa0631450 | AT3G27190.1 | 28.313 | 166 | 112 | 4 | 4 | 167 | 321 | 481 | 8.55e-16 | 74.3 |
| Msa0631450 | AT3G27440.1 | 29.268 | 164 | 113 | 3 | 4 | 167 | 287 | 447 | 1.20e-15 | 73.9 |
| Msa0631450 | AT3G27440.3 | 29.268 | 164 | 113 | 3 | 4 | 167 | 240 | 400 | 1.25e-15 | 73.6 |
| Msa0631450 | AT1G55810.3 | 29.927 | 137 | 94 | 2 | 31 | 167 | 329 | 463 | 4.50e-15 | 72.0 |
| Msa0631450 | AT1G55810.1 | 29.927 | 137 | 94 | 2 | 31 | 167 | 329 | 463 | 4.50e-15 | 72.0 |
| Msa0631450 | AT1G55810.6 | 29.927 | 137 | 94 | 2 | 31 | 167 | 329 | 463 | 4.50e-15 | 72.0 |
| Msa0631450 | AT1G55810.7 | 26.506 | 166 | 110 | 4 | 4 | 167 | 293 | 448 | 5.53e-13 | 66.2 |
| Msa0631450 | AT1G55810.5 | 35.789 | 95 | 60 | 1 | 73 | 167 | 392 | 485 | 6.74e-13 | 65.9 |
| Msa0631450 | AT1G55810.4 | 35.789 | 95 | 60 | 1 | 73 | 167 | 392 | 485 | 6.74e-13 | 65.9 |
| Msa0631450 | AT1G55810.2 | 28.467 | 137 | 91 | 2 | 31 | 167 | 329 | 458 | 7.15e-13 | 65.9 |
Find 47 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTAGGTTTATAATTCC+TGG | 0.250188 | 4_3:+14394864 | Msa0631450:intron |
| AAATCAAACTGACCGGAATA+TGG | 0.293449 | 4_3:-14395079 | None:intergenic |
| TGCAGGCTTCATGTGTATAC+TGG | 0.309029 | 4_3:+14394738 | Msa0631450:intron |
| TAAAGTTGTAAACTATTTAT+CGG | 0.317264 | 4_3:+14394964 | Msa0631450:three_prime_UTR |
| GCAAGACCAGCTCTCAAGAT+TGG | 0.385205 | 4_3:-14389924 | None:intergenic |
| GACCCTTCTGCAAACTTGTC+CGG | 0.411067 | 4_3:-14390495 | None:intergenic |
| ATATTCCGGTCAGTTTGATT+TGG | 0.422444 | 4_3:+14395081 | Msa0631450:three_prime_UTR |
| AAGCTAAGCGAGCAGTTCCC+AGG | 0.447452 | 4_3:+14394648 | Msa0631450:CDS |
| AATACATGAATGCTCATTGT+TGG | 0.455917 | 4_3:+14394922 | Msa0631450:exon |
| AGAAGGGTCTAAAGTATTTG+TGG | 0.459625 | 4_3:+14390509 | Msa0631450:CDS |
| CTAACAGCCACAGGCTCCCT+TGG | 0.460972 | 4_3:-14389600 | None:intergenic |
| ATTCCTGGCCTTGGAGATGC+TGG | 0.464404 | 4_3:+14394879 | Msa0631450:CDS |
| AGGTTTATAATTCCTGGCCT+TGG | 0.467282 | 4_3:+14394870 | Msa0631450:intron |
| AACCCTTGGTCATTAAGAAC+GGG | 0.475183 | 4_3:-14394771 | None:intergenic |
| TACTTGTTCAAATATACAGT+TGG | 0.479917 | 4_3:-14390279 | None:intergenic |
| CAGTTTGATTTGGTAGTCAC+CGG | 0.485181 | 4_3:+14395091 | Msa0631450:three_prime_UTR |
| CTCTTAAAAGAACGTGGAGT+TGG | 0.492841 | 4_3:+14393625 | Msa0631450:CDS |
| ATCTGCTTGCTCGTCACCTC+CGG | 0.496919 | 4_3:+14394617 | Msa0631450:CDS |
| GTTGATCCTATGCTTGCAAC+AGG | 0.506785 | 4_3:+14390531 | Msa0631450:CDS |
| TCGCCAGCATCTCCAAGGCC+AGG | 0.513605 | 4_3:-14394882 | None:intergenic |
| TGGAGAGATACAATCACCGC+TGG | 0.517187 | 4_3:+14389551 | Msa0631450:CDS |
| AATTGCAGGTGGTACTATAG+TGG | 0.532764 | 4_3:+14393591 | Msa0631450:intron |
| GATGCTGGCGATCGCAGCTA+TGG | 0.540707 | 4_3:+14394894 | Msa0631450:CDS |
| GACTACCAAATCAAACTGAC+CGG | 0.552817 | 4_3:-14395086 | None:intergenic |
| ATCCCGTTCTTAATGACCAA+GGG | 0.562303 | 4_3:+14394769 | Msa0631450:CDS |
| TGCGATCGCCAGCATCTCCA+AGG | 0.563908 | 4_3:-14394887 | None:intergenic |
| AGCTAAGCGAGCAGTTCCCA+GGG | 0.567648 | 4_3:+14394649 | Msa0631450:CDS |
| GTAATTCCAATCTTGAGAGC+TGG | 0.568731 | 4_3:+14389918 | Msa0631450:CDS |
| CAGTGGAGTTCATTGATCCA+AGG | 0.575844 | 4_3:+14389583 | Msa0631450:CDS |
| CAACCCTTGGTCATTAAGAA+CGG | 0.576224 | 4_3:-14394772 | None:intergenic |
| TTACCGGACAAGTTTGCAGA+AGG | 0.578249 | 4_3:+14390492 | Msa0631450:CDS |
| AGTGGAGTTCATTGATCCAA+GGG | 0.589415 | 4_3:+14389584 | Msa0631450:CDS |
| TACATACCTGTTGCAAGCAT+AGG | 0.594852 | 4_3:-14390537 | None:intergenic |
| CATTGATCCAAGGGAGCCTG+TGG | 0.595205 | 4_3:+14389593 | Msa0631450:CDS |
| ACTATCGAAATGATTTAGAC+CGG | 0.600091 | 4_3:-14395110 | None:intergenic |
| ACCGCTGGGAGTCGCCTCAG+TGG | 0.600355 | 4_3:+14389566 | Msa0631450:CDS |
| TGGCAACAAGCAGATTAAAG+TGG | 0.604641 | 4_3:+14393645 | Msa0631450:CDS |
| TGTATCTCTCCAGACACAGT+TGG | 0.615577 | 4_3:-14389540 | None:intergenic |
| ACAATGAACTAAGTTTCCGA+TGG | 0.629999 | 4_3:-14395137 | None:intergenic |
| TCCACTGAGGCGACTCCCAG+CGG | 0.630429 | 4_3:-14389567 | None:intergenic |
| AGTATGGTACTAACAGCCAC+AGG | 0.638274 | 4_3:-14389609 | None:intergenic |
| TACCGGACAAGTTTGCAGAA+GGG | 0.638294 | 4_3:+14390493 | Msa0631450:CDS |
| GATCCCGTTCTTAATGACCA+AGG | 0.640292 | 4_3:+14394768 | Msa0631450:CDS |
| CATTTCGATAGTCTGACCAT+CGG | 0.647175 | 4_3:+14395121 | Msa0631450:three_prime_UTR |
| GGAGAGATACAATCACCGCT+GGG | 0.653180 | 4_3:+14389552 | Msa0631450:CDS |
| TTGAATCTCTTAAAAGAACG+TGG | 0.656928 | 4_3:+14393619 | Msa0631450:CDS |
| TGGATCAATGAACTCCACTG+AGG | 0.738069 | 4_3:-14389580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAAAATAAAAATT+TGG | + | chr4_3:14393105-14393124 | Msa0631450:intron | 0.0% |
| !!! | TTGTTATTAGATTTTTTTAA+TGG | + | chr4_3:14392959-14392978 | Msa0631450:intron | 10.0% |
| !!! | TTTTATAAAATTAAAACCAT+TGG | - | chr4_3:14393097-14393116 | None:intergenic | 10.0% |
| !! | TTATAAAATAAAAATTTGGA+TGG | + | chr4_3:14393109-14393128 | Msa0631450:intron | 10.0% |
| !! | ATAAACTTATAATAAGATGA+TGG | + | chr4_3:14390105-14390124 | Msa0631450:intron | 15.0% |
| !!! | TTTTAGACATCATAATATAT+AGG | + | chr4_3:14390131-14390150 | Msa0631450:intron | 15.0% |
| !! | TTTAGACATCATAATATATA+GGG | + | chr4_3:14390132-14390151 | Msa0631450:intron | 15.0% |
| !! | TCGTTAAAAAAATGTTAATA+TGG | - | chr4_3:14390956-14390975 | None:intergenic | 15.0% |
| !!! | ATTAACATTTTTTTAACGAA+TGG | + | chr4_3:14390957-14390976 | Msa0631450:intron | 15.0% |
| !! | ATAGTTAACTAAGTAAATTA+AGG | - | chr4_3:14391589-14391608 | None:intergenic | 15.0% |
| !!! | TTTTTATTACTTTTATCCAA+TGG | + | chr4_3:14393078-14393097 | Msa0631450:intron | 15.0% |
| !!! | AAATCTTATTTATTTGCAAA+AGG | - | chr4_3:14393928-14393947 | None:intergenic | 15.0% |
| !! | CTAATATATAAACACTTATA+CGG | + | chr4_3:14394312-14394331 | Msa0631450:intron | 15.0% |
| !!! | TTCTAATTATTAAATTTTGC+AGG | + | chr4_3:14394721-14394740 | Msa0631450:intron | 15.0% |
| !! | TAAAGTTGTAAACTATTTAT+CGG | + | chr4_3:14394964-14394983 | Msa0631450:three_prime_UTR | 15.0% |
| !! | TCAATTATTAAATGTAGAAC+TGG | - | chr4_3:14389700-14389719 | None:intergenic | 20.0% |
| !!! | TTCTTTTGTTTCTTTCAAAA+AGG | + | chr4_3:14390228-14390247 | Msa0631450:intron | 20.0% |
| !!! | AATTTTGGTTTGGATTATAA+TGG | + | chr4_3:14390874-14390893 | Msa0631450:intron | 20.0% |
| !! | TATCATTACATTGAATAAAC+TGG | - | chr4_3:14391310-14391329 | None:intergenic | 20.0% |
| !! | AAATGTAAGTTTAAAAGAAG+TGG | - | chr4_3:14391344-14391363 | None:intergenic | 20.0% |
| !! | AAATACACCAAAATCAAATT+AGG | - | chr4_3:14391793-14391812 | None:intergenic | 20.0% |
| !!! | AATTGTTTTTCATATTAGTG+TGG | - | chr4_3:14391911-14391930 | None:intergenic | 20.0% |
| !! | TTAGAATATTTACCAAACTT+CGG | - | chr4_3:14392468-14392487 | None:intergenic | 20.0% |
| !! | ACAAATAATGTTTAGTTGTT+TGG | + | chr4_3:14392487-14392506 | Msa0631450:intron | 20.0% |
| !! | TATTAAACATCATTATGTCT+TGG | + | chr4_3:14392525-14392544 | Msa0631450:intron | 20.0% |
| !! | AAAAAAAAATACATCGACAT+AGG | + | chr4_3:14392617-14392636 | Msa0631450:intron | 20.0% |
| !!! | ATATTTTATGCAAAACGATT+TGG | + | chr4_3:14392683-14392702 | Msa0631450:intron | 20.0% |
| !! | GTATTATGATTTATCCAATT+TGG | - | chr4_3:14392742-14392761 | None:intergenic | 20.0% |
| !!! | ATTCGTTCAAATTTTTCTAA+AGG | - | chr4_3:14392928-14392947 | None:intergenic | 20.0% |
| !! | TTTAGAAAAATTTGAACGAA+TGG | + | chr4_3:14392927-14392946 | Msa0631450:intron | 20.0% |
| !!! | AGATTTTTTTAATGGAATTG+TGG | + | chr4_3:14392967-14392986 | Msa0631450:intron | 20.0% |
| !!! | AATTTTGGTTTGCATTATAA+TGG | - | chr4_3:14393008-14393027 | None:intergenic | 20.0% |
| !!! | GAAAAAAATAGTTAATGGAT+TGG | - | chr4_3:14393162-14393181 | None:intergenic | 20.0% |
| !! | CAATCGAAAAAAATAGTTAA+TGG | - | chr4_3:14393167-14393186 | None:intergenic | 20.0% |
| !!! | TTAACTATTTTTTTCGATTG+TGG | + | chr4_3:14393167-14393186 | Msa0631450:intron | 20.0% |
| !!! | TGAAATCAACAAAAAGTATA+CGG | - | chr4_3:14393412-14393431 | None:intergenic | 20.0% |
| !!! | TAAATTTTTTTTCCAGTTCA+AGG | - | chr4_3:14393447-14393466 | None:intergenic | 20.0% |
| !! | AGATATTGTAAATAACACTA+GGG | - | chr4_3:14393530-14393549 | None:intergenic | 20.0% |
| !! | TAGATATTGTAAATAACACT+AGG | - | chr4_3:14393531-14393550 | None:intergenic | 20.0% |
| !! | GCTTAAATTTAAAAGAATTC+AGG | - | chr4_3:14393715-14393734 | None:intergenic | 20.0% |
| !! | CAGAAAATAAACTCAAATAA+GGG | - | chr4_3:14394105-14394124 | None:intergenic | 20.0% |
| !! | ACAGAAAATAAACTCAAATA+AGG | - | chr4_3:14394106-14394125 | None:intergenic | 20.0% |
| !! | TTGATTAATTGCCTAATTAA+TGG | + | chr4_3:14394576-14394595 | Msa0631450:intron | 20.0% |
| !! | TAATTAGAAAACTAAATGCT+TGG | - | chr4_3:14394710-14394729 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTCCATATTC+CGG | + | chr4_3:14395067-14395086 | Msa0631450:three_prime_UTR | 20.0% |
| ! | TAAACATATTGAAAGCAGTA+TGG | - | chr4_3:14389628-14389647 | None:intergenic | 25.0% |
| !! | TAAAAATCTGAGCTTAGTTT+TGG | - | chr4_3:14389776-14389795 | None:intergenic | 25.0% |
| ! | GAAAAACTGATATAAGATTC+AGG | - | chr4_3:14389896-14389915 | None:intergenic | 25.0% |
| !! | GAATCTTATATCAGTTTTTC+AGG | + | chr4_3:14389896-14389915 | Msa0631450:intron | 25.0% |
| ! | ATCCAACAAACATGATTTAT+CGG | + | chr4_3:14390035-14390054 | Msa0631450:intron | 25.0% |
| ! | ACATCATAATATATAGGGAA+TGG | + | chr4_3:14390137-14390156 | Msa0631450:intron | 25.0% |
| ! | CATCATAATATATAGGGAAT+GGG | + | chr4_3:14390138-14390157 | Msa0631450:intron | 25.0% |
| ! | ATCATAATATATAGGGAATG+GGG | + | chr4_3:14390139-14390158 | Msa0631450:intron | 25.0% |
| ! | TACTTGTTCAAATATACAGT+TGG | - | chr4_3:14390282-14390301 | None:intergenic | 25.0% |
| ! | ATGTGAATACATAACAAATG+GGG | - | chr4_3:14390453-14390472 | None:intergenic | 25.0% |
| ! | GATGTGAATACATAACAAAT+GGG | - | chr4_3:14390454-14390473 | None:intergenic | 25.0% |
| ! | TGATGTGAATACATAACAAA+TGG | - | chr4_3:14390455-14390474 | None:intergenic | 25.0% |
| ! | CAGATGGAAAAAGAATTAAA+AGG | - | chr4_3:14390612-14390631 | None:intergenic | 25.0% |
| !! | TGATTTTGTAAGTATGAGTA+AGG | - | chr4_3:14390771-14390790 | None:intergenic | 25.0% |
| !! | GTCATTTGTTAATGTGAAAT+TGG | - | chr4_3:14391234-14391253 | None:intergenic | 25.0% |
| ! | GAATACTATATAGTCATATC+TGG | - | chr4_3:14391369-14391388 | None:intergenic | 25.0% |
| !!! | TAAGATGCCTAATTTGATTT+TGG | + | chr4_3:14391783-14391802 | Msa0631450:intron | 25.0% |
| ! | GAAACATTCATCATCTAATT+TGG | - | chr4_3:14391949-14391968 | None:intergenic | 25.0% |
| ! | TGCATCTTATAATGACATTA+TGG | - | chr4_3:14391985-14392004 | None:intergenic | 25.0% |
| ! | TCGATTCTAATCTAAATCAT+GGG | - | chr4_3:14392073-14392092 | None:intergenic | 25.0% |
| !! | ATCGATTCTAATCTAAATCA+TGG | - | chr4_3:14392074-14392093 | None:intergenic | 25.0% |
| !! | TAGAGCAACTATCAATTTTA+TGG | + | chr4_3:14392254-14392273 | Msa0631450:intron | 25.0% |
| !! | AGAGCAACTATCAATTTTAT+GGG | + | chr4_3:14392255-14392274 | Msa0631450:intron | 25.0% |
| ! | AGTTAGGATTAATATCTTTC+AGG | - | chr4_3:14392294-14392313 | None:intergenic | 25.0% |
| ! | GATTAACAACTATCAAAGTT+AGG | - | chr4_3:14392310-14392329 | None:intergenic | 25.0% |
| ! | AGACAATAAAGGTTAGAAAT+TGG | + | chr4_3:14392370-14392389 | Msa0631450:intron | 25.0% |
| ! | TTGATGTAAAATCAGATGAA+GGG | + | chr4_3:14392706-14392725 | Msa0631450:intron | 25.0% |
| !!! | GTTCAAATTTTTCTAAAGGA+TGG | - | chr4_3:14392924-14392943 | None:intergenic | 25.0% |
| ! | AAAAATTTGAACGAATGGAT+TGG | + | chr4_3:14392932-14392951 | Msa0631450:intron | 25.0% |
| !! | AATATGGATGGGATAAATTT+TGG | - | chr4_3:14393023-14393042 | None:intergenic | 25.0% |
| ! | CCGTGTAAAAGAAATTATAA+GGG | - | chr4_3:14393360-14393379 | None:intergenic | 25.0% |
| !! | CCCTTATAATTTCTTTTACA+CGG | + | chr4_3:14393357-14393376 | Msa0631450:intron | 25.0% |
| ! | ACCGTGTAAAAGAAATTATA+AGG | - | chr4_3:14393361-14393380 | None:intergenic | 25.0% |
| !! | TAATTTTTACAACCTTGAAC+TGG | + | chr4_3:14393432-14393451 | Msa0631450:intron | 25.0% |
| ! | TCAATCAAATCAAAACTAGT+TGG | + | chr4_3:14393477-14393496 | Msa0631450:intron | 25.0% |
| !! | ATATCTATGCATCAATTTTG+TGG | + | chr4_3:14393544-14393563 | Msa0631450:intron | 25.0% |
| !! | ATATTTCTTTTCATGCACTT+TGG | + | chr4_3:14393740-14393759 | Msa0631450:intron | 25.0% |
| !! | TATTTCTTTTCATGCACTTT+GGG | + | chr4_3:14393741-14393760 | Msa0631450:intron | 25.0% |
| ! | GTATAATTGAAGTAAGAATG+AGG | + | chr4_3:14393811-14393830 | Msa0631450:intron | 25.0% |
| ! | TTATGAAAGCAGATTAACTT+AGG | + | chr4_3:14393862-14393881 | Msa0631450:intron | 25.0% |
| !!! | TATTTATAAGCTTGTTGAGA+TGG | - | chr4_3:14394013-14394032 | None:intergenic | 25.0% |
| !! | CTTTTATATAAGCTATAGAC+TGG | - | chr4_3:14394240-14394259 | None:intergenic | 25.0% |
| ! | TATAAACACTTATACGGTAA+AGG | + | chr4_3:14394318-14394337 | Msa0631450:intron | 25.0% |
| ! | CTTAAATTTCCTATATGTTG+TGG | + | chr4_3:14394461-14394480 | Msa0631450:intron | 25.0% |
| ! | TTGTCATTAGTCCATTAATT+AGG | - | chr4_3:14394590-14394609 | None:intergenic | 25.0% |
| !! | CTAGTTTAAGTTAAAATGTG+AGG | - | chr4_3:14394801-14394820 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTTCTTTTGTCT+AGG | + | chr4_3:14394850-14394869 | Msa0631450:intron | 25.0% |
| ! | AATAACCAAAAACACTAAAG+AGG | - | chr4_3:14395008-14395027 | None:intergenic | 25.0% |
| ATGATTGTCATAATGATGTG+CGG | + | chr4_3:14389842-14389861 | Msa0631450:intron | 30.0% | |
| TCAGGCAATAACTTACAAAA+AGG | - | chr4_3:14389878-14389897 | None:intergenic | 30.0% | |
| !! | AGATGATATGTTTTTGTTGC+AGG | - | chr4_3:14389978-14389997 | None:intergenic | 30.0% |
| GCAACAAAAACATATCATCT+AGG | + | chr4_3:14389978-14389997 | Msa0631450:CDS | 30.0% | |
| !!! | CATGTATTTTACTAGTTCTG+AGG | + | chr4_3:14390009-14390028 | Msa0631450:intron | 30.0% |
| TCCAACAAACATGATTTATC+GGG | + | chr4_3:14390036-14390055 | Msa0631450:intron | 30.0% | |
| !! | ACCATTGTTTCTCTTTCTTT+TGG | + | chr4_3:14390405-14390424 | Msa0631450:intron | 30.0% |
| CCAAAGAAATTCATATCAGA+TGG | - | chr4_3:14390628-14390647 | None:intergenic | 30.0% | |
| CCATCTGATATGAATTTCTT+TGG | + | chr4_3:14390625-14390644 | Msa0631450:intron | 30.0% | |
| ATGAATTTCTTTGGCATTCA+TGG | + | chr4_3:14390634-14390653 | Msa0631450:intron | 30.0% | |
| TAAGGCTTCTATCTATATGT+TGG | + | chr4_3:14390659-14390678 | Msa0631450:intron | 30.0% | |
| AAGGCTTCTATCTATATGTT+GGG | + | chr4_3:14390660-14390679 | Msa0631450:intron | 30.0% | |
| ATATTCAGATTGGATTGAGT+TGG | + | chr4_3:14390733-14390752 | Msa0631450:intron | 30.0% | |
| AAATCAACTTGTAAGATGAG+AGG | + | chr4_3:14390785-14390804 | Msa0631450:intron | 30.0% | |
| ! | ATGTCTTAACTCTTTTGTAG+CGG | + | chr4_3:14390829-14390848 | Msa0631450:intron | 30.0% |
| !!! | ATGGTGGATTGAATGAATTT+TGG | + | chr4_3:14390859-14390878 | Msa0631450:intron | 30.0% |
| !!! | GGATTGAATGAATTTTGGTT+TGG | + | chr4_3:14390864-14390883 | Msa0631450:intron | 30.0% |
| AGATACACTAACAGATGAAT+TGG | - | chr4_3:14390987-14391006 | None:intergenic | 30.0% | |
| TTCATCTGTTAGTGTATCTT+TGG | + | chr4_3:14390988-14391007 | Msa0631450:intron | 30.0% | |
| TGTTAGTGTATCTTTGGTAT+TGG | + | chr4_3:14390994-14391013 | Msa0631450:intron | 30.0% | |
| GTTAGTGTATCTTTGGTATT+GGG | + | chr4_3:14390995-14391014 | Msa0631450:intron | 30.0% | |
| ! | TCTAAAACTAACTGCATGTT+TGG | - | chr4_3:14391052-14391071 | None:intergenic | 30.0% |
| AAACAGATAATCCAACATGT+GGG | - | chr4_3:14391140-14391159 | None:intergenic | 30.0% | |
| AAAACAGATAATCCAACATG+TGG | - | chr4_3:14391141-14391160 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATTCATGTCTTA+TGG | + | chr4_3:14391155-14391174 | Msa0631450:intron | 30.0% |
| ! | GAAGCTTTTGAATCTATGTA+TGG | + | chr4_3:14391257-14391276 | Msa0631450:intron | 30.0% |
| AAAGTGGTGACATCATAAAA+TGG | + | chr4_3:14391539-14391558 | Msa0631450:intron | 30.0% | |
| ! | ATTGAGTGTATTTTCGTGTT+AGG | + | chr4_3:14392099-14392118 | Msa0631450:intron | 30.0% |
| GAAGGTGATAAATGATTCAA+TGG | + | chr4_3:14392162-14392181 | Msa0631450:intron | 30.0% | |
| ! | AAGAGAGTGTGAAATATACT+AGG | + | chr4_3:14392194-14392213 | Msa0631450:intron | 30.0% |
| ! | AGAGAGTGTGAAATATACTA+GGG | + | chr4_3:14392195-14392214 | Msa0631450:intron | 30.0% |
| AGGATTAATATCTTTCAGGA+GGG | - | chr4_3:14392290-14392309 | None:intergenic | 30.0% | |
| TAGGATTAATATCTTTCAGG+AGG | - | chr4_3:14392291-14392310 | None:intergenic | 30.0% | |
| ATAGTTGTTAATCACAAGAG+TGG | + | chr4_3:14392317-14392336 | Msa0631450:intron | 30.0% | |
| !!! | TTTTTTTTCTCTCCGAAGTT+TGG | + | chr4_3:14392453-14392472 | Msa0631450:intron | 30.0% |
| GTTGATGTAAAATCAGATGA+AGG | + | chr4_3:14392705-14392724 | Msa0631450:intron | 30.0% | |
| GATCACTAAATAAGCAAATG+TGG | + | chr4_3:14393131-14393150 | Msa0631450:intron | 30.0% | |
| ! | TTTCACATGCAAAAGAGTAT+GGG | - | chr4_3:14393196-14393215 | None:intergenic | 30.0% |
| !!! | GGTTTTAAGGATGATAAGTT+AGG | - | chr4_3:14393315-14393334 | None:intergenic | 30.0% |
| ! | ATCTTGCAAGTTAGGTTTTA+AGG | - | chr4_3:14393328-14393347 | None:intergenic | 30.0% |
| AATCAAAACTAGTTGGTTAG+TGG | + | chr4_3:14393484-14393503 | Msa0631450:intron | 30.0% | |
| !!! | TAGTGGATTGGTTCAAATTT+TGG | + | chr4_3:14393501-14393520 | Msa0631450:intron | 30.0% |
| TTATGTTTCGTATGAATTGC+AGG | + | chr4_3:14393577-14393596 | Msa0631450:intron | 30.0% | |
| !! | ACGTTCTTTTAAGAGATTCA+AGG | - | chr4_3:14393620-14393639 | None:intergenic | 30.0% |
| TTGAATCTCTTAAAAGAACG+TGG | + | chr4_3:14393619-14393638 | Msa0631450:CDS | 30.0% | |
| AAAATAAGCTCAATCCAAAC+GGG | - | chr4_3:14393889-14393908 | None:intergenic | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | - | chr4_3:14393890-14393909 | None:intergenic | 30.0% | |
| TAAGATAAGTCAATCCAAAC+AGG | + | chr4_3:14394079-14394098 | Msa0631450:intron | 30.0% | |
| TTGTCTAGGTTTATAATTCC+TGG | + | chr4_3:14394864-14394883 | Msa0631450:intron | 30.0% | |
| AATACATGAATGCTCATTGT+TGG | + | chr4_3:14394922-14394941 | Msa0631450:exon | 30.0% | |
| ACTATCGAAATGATTTAGAC+CGG | - | chr4_3:14395113-14395132 | None:intergenic | 30.0% | |
| GCACATCATTATGACAATCA+TGG | - | chr4_3:14389843-14389862 | None:intergenic | 35.0% | |
| TCCCGATAAATCATGTTTGT+TGG | - | chr4_3:14390040-14390059 | None:intergenic | 35.0% | |
| AGAAGAAGTGAAAGGAGAAA+AGG | - | chr4_3:14390354-14390373 | None:intergenic | 35.0% | |
| TTCTCCTTTCACTTCTTCTA+TGG | + | chr4_3:14390355-14390374 | Msa0631450:intron | 35.0% | |
| GCCAAAAGAAAGAGAAACAA+TGG | - | chr4_3:14390409-14390428 | None:intergenic | 35.0% | |
| ! | ACATCACTTGTCTGATTTTC+AGG | + | chr4_3:14390469-14390488 | Msa0631450:intron | 35.0% |
| !!! | TTGTCTGATTTTCAGGTTAC+CGG | + | chr4_3:14390476-14390495 | Msa0631450:intron | 35.0% |
| ! | AGAAGGGTCTAAAGTATTTG+TGG | + | chr4_3:14390509-14390528 | Msa0631450:CDS | 35.0% |
| GGAAAAAGAATTAAAAGGCC+CGG | - | chr4_3:14390607-14390626 | None:intergenic | 35.0% | |
| TCTTTGGCATTCATGGAATA+AGG | + | chr4_3:14390641-14390660 | Msa0631450:intron | 35.0% | |
| AACTAAATAACATACGCGTG+TGG | + | chr4_3:14390707-14390726 | Msa0631450:intron | 35.0% | |
| AACAGATAATCCAACATGTG+GGG | - | chr4_3:14391139-14391158 | None:intergenic | 35.0% | |
| ! | TGTGTTGCTAGAGTAAAAAG+TGG | + | chr4_3:14391523-14391542 | Msa0631450:intron | 35.0% |
| TAATGTAGAACTCCGTCTTA+TGG | + | chr4_3:14391712-14391731 | Msa0631450:intron | 35.0% | |
| AATGTAGAACTCCGTCTTAT+GGG | + | chr4_3:14391713-14391732 | Msa0631450:intron | 35.0% | |
| CTTCTTCAACATGTCTATCA+TGG | - | chr4_3:14392048-14392067 | None:intergenic | 35.0% | |
| ! | TATTTTCGTGTTAGGCATGT+GGG | + | chr4_3:14392107-14392126 | Msa0631450:intron | 35.0% |
| ! | GAGAGTGTGAAATATACTAG+GGG | + | chr4_3:14392196-14392215 | Msa0631450:intron | 35.0% |
| TGCATTGCAATTTCACTGAA+CGG | + | chr4_3:14392558-14392577 | Msa0631450:intron | 35.0% | |
| ATTTCACTGAACGGATCAAT+AGG | + | chr4_3:14392567-14392586 | Msa0631450:intron | 35.0% | |
| AGGGAATTACAATGCCAAAT+TGG | + | chr4_3:14392725-14392744 | Msa0631450:intron | 35.0% | |
| TACAAATAATCTAGTGAGCG+TGG | + | chr4_3:14392772-14392791 | Msa0631450:intron | 35.0% | |
| TCCATTCCATCTGTTAGTTA+TGG | - | chr4_3:14392898-14392917 | None:intergenic | 35.0% | |
| !! | ATTTGAACGAATGGATTGGA+TGG | + | chr4_3:14392936-14392955 | Msa0631450:intron | 35.0% |
| CTAGTCATATCAATCCATCT+AGG | - | chr4_3:14393052-14393071 | None:intergenic | 35.0% | |
| CACTAAATAAGCAAATGTGG+TGG | + | chr4_3:14393134-14393153 | Msa0631450:intron | 35.0% | |
| GTTTCACATGCAAAAGAGTA+TGG | - | chr4_3:14393197-14393216 | None:intergenic | 35.0% | |
| ! | ACTCTTTTGCATGTGAAACT+TGG | + | chr4_3:14393198-14393217 | Msa0631450:intron | 35.0% |
| TTGTAACGCTCAATGCTATT+AGG | + | chr4_3:14393238-14393257 | Msa0631450:intron | 35.0% | |
| GGTGTGTAACTAATACAGAT+AGG | + | chr4_3:14393264-14393283 | Msa0631450:intron | 35.0% | |
| CTGATTGCAGTTTCTGAATT+AGG | + | chr4_3:14393289-14393308 | Msa0631450:intron | 35.0% | |
| ! | AAAACCTAACTTGCAAGATG+AGG | + | chr4_3:14393329-14393348 | Msa0631450:intron | 35.0% |
| ! | AAACCTAACTTGCAAGATGA+GGG | + | chr4_3:14393330-14393349 | Msa0631450:intron | 35.0% |
| ! | AAACTAGTTGGTTAGTGGAT+TGG | + | chr4_3:14393489-14393508 | Msa0631450:intron | 35.0% |
| ACAAGCAGATTAAAGTGGTA+AGG | + | chr4_3:14393650-14393669 | Msa0631450:intron | 35.0% | |
| AGGGTAATGCATAACAAACT+TGG | - | chr4_3:14394413-14394432 | None:intergenic | 35.0% | |
| TACCATGCACAATGAGTATA+GGG | - | chr4_3:14394432-14394451 | None:intergenic | 35.0% | |
| ATACCATGCACAATGAGTAT+AGG | - | chr4_3:14394433-14394452 | None:intergenic | 35.0% | |
| AATTTCCTATATGTTGTGGC+TGG | + | chr4_3:14394465-14394484 | Msa0631450:intron | 35.0% | |
| ! | TTTTTCCAGCCACAACATAT+AGG | - | chr4_3:14394473-14394492 | None:intergenic | 35.0% |
| TAATATTATGGGACTACCCT+GGG | - | chr4_3:14394668-14394687 | None:intergenic | 35.0% | |
| ATAATATTATGGGACTACCC+TGG | - | chr4_3:14394669-14394688 | None:intergenic | 35.0% | |
| ! | AGTTGCCTCTTTAGTGTTTT+TGG | + | chr4_3:14395000-14395019 | Msa0631450:three_prime_UTR | 35.0% |
| AAATCAAACTGACCGGAATA+TGG | - | chr4_3:14395082-14395101 | None:intergenic | 35.0% | |
| ATATTCCGGTCAGTTTGATT+TGG | + | chr4_3:14395081-14395100 | Msa0631450:three_prime_UTR | 35.0% | |
| ACAATGAACTAAGTTTCCGA+TGG | - | chr4_3:14395140-14395159 | None:intergenic | 35.0% | |
| AGTGGAGTTCATTGATCCAA+GGG | + | chr4_3:14389584-14389603 | Msa0631450:CDS | 40.0% | |
| GTAATTCCAATCTTGAGAGC+TGG | + | chr4_3:14389918-14389937 | Msa0631450:CDS | 40.0% | |
| ATGAAAGTAGAGTACGCTTC+TGG | + | chr4_3:14390172-14390191 | Msa0631450:intron | 40.0% | |
| CAAGCCATAGAAGAAGTGAA+AGG | - | chr4_3:14390362-14390381 | None:intergenic | 40.0% | |
| TACATACCTGTTGCAAGCAT+AGG | - | chr4_3:14390540-14390559 | None:intergenic | 40.0% | |
| TCATGCGTATTCATTAACGC+CGG | + | chr4_3:14390585-14390604 | Msa0631450:intron | 40.0% | |
| CGTGTGGACAATATTCAGAT+TGG | + | chr4_3:14390723-14390742 | Msa0631450:intron | 40.0% | |
| ! | TCTTAACTCTTTTGTAGCGG+TGG | + | chr4_3:14390832-14390851 | Msa0631450:intron | 40.0% |
| ! | CTTTTGTAGCGGTGGAAAAA+TGG | + | chr4_3:14390840-14390859 | Msa0631450:intron | 40.0% |
| ! | GTATTTTCGTGTTAGGCATG+TGG | + | chr4_3:14392106-14392125 | Msa0631450:intron | 40.0% |
| !! | ATCACAAGAGTGGATTGAGT+TGG | + | chr4_3:14392327-14392346 | Msa0631450:intron | 40.0% |
| CCTTTATTGTCTCAGACAGT+CGG | - | chr4_3:14392362-14392381 | None:intergenic | 40.0% | |
| AAATAATCTAGTGAGCGTGG+TGG | + | chr4_3:14392775-14392794 | Msa0631450:intron | 40.0% | |
| ATTTACCCCTAATTGACCTC+AGG | - | chr4_3:14392846-14392865 | None:intergenic | 40.0% | |
| GTCAATTAGGGGTAAATCGA+GGG | + | chr4_3:14392849-14392868 | Msa0631450:intron | 40.0% | |
| GCCATAACTAACAGATGGAA+TGG | + | chr4_3:14392894-14392913 | Msa0631450:intron | 40.0% | |
| CATATCAATCCATCTAGGAG+TGG | - | chr4_3:14393047-14393066 | None:intergenic | 40.0% | |
| ! | AACCTAACTTGCAAGATGAG+GGG | + | chr4_3:14393331-14393350 | Msa0631450:intron | 40.0% |
| TGTTTCGTATGAATTGCAGG+TGG | + | chr4_3:14393580-14393599 | Msa0631450:intron | 40.0% | |
| AATTGCAGGTGGTACTATAG+TGG | + | chr4_3:14393591-14393610 | Msa0631450:intron | 40.0% | |
| CTCTTAAAAGAACGTGGAGT+TGG | + | chr4_3:14393625-14393644 | Msa0631450:CDS | 40.0% | |
| TGGCAACAAGCAGATTAAAG+TGG | + | chr4_3:14393645-14393664 | Msa0631450:CDS | 40.0% | |
| AGATTAACTTAGGTCCCGTT+TGG | + | chr4_3:14393872-14393891 | Msa0631450:intron | 40.0% | |
| AACTCAAATAAGGGCCTGTT+TGG | - | chr4_3:14394096-14394115 | None:intergenic | 40.0% | |
| ACGGTAAAGGTTTATGCTAC+AGG | + | chr4_3:14394331-14394350 | Msa0631450:intron | 40.0% | |
| TACCCTATACTCATTGTGCA+TGG | + | chr4_3:14394427-14394446 | Msa0631450:intron | 40.0% | |
| ATCCCGTTCTTAATGACCAA+GGG | + | chr4_3:14394769-14394788 | Msa0631450:CDS | 40.0% | |
| AACCCTTGGTCATTAAGAAC+GGG | - | chr4_3:14394774-14394793 | None:intergenic | 40.0% | |
| CAACCCTTGGTCATTAAGAA+CGG | - | chr4_3:14394775-14394794 | None:intergenic | 40.0% | |
| AGGTTTATAATTCCTGGCCT+TGG | + | chr4_3:14394870-14394889 | Msa0631450:intron | 40.0% | |
| GACTACCAAATCAAACTGAC+CGG | - | chr4_3:14395089-14395108 | None:intergenic | 40.0% | |
| !! | CAGTTTGATTTGGTAGTCAC+CGG | + | chr4_3:14395091-14395110 | Msa0631450:three_prime_UTR | 40.0% |
| CATTTCGATAGTCTGACCAT+CGG | + | chr4_3:14395121-14395140 | Msa0631450:three_prime_UTR | 40.0% | |
| ! | TGTTTTCAGCCAACTGTGTC+TGG | + | chr4_3:14389531-14389550 | Msa0631450:CDS | 45.0% |
| TGTATCTCTCCAGACACAGT+TGG | - | chr4_3:14389543-14389562 | None:intergenic | 45.0% | |
| TGGATCAATGAACTCCACTG+AGG | - | chr4_3:14389583-14389602 | None:intergenic | 45.0% | |
| CAGTGGAGTTCATTGATCCA+AGG | + | chr4_3:14389583-14389602 | Msa0631450:CDS | 45.0% | |
| AGTATGGTACTAACAGCCAC+AGG | - | chr4_3:14389612-14389631 | None:intergenic | 45.0% | |
| TTACCGGACAAGTTTGCAGA+AGG | + | chr4_3:14390492-14390511 | Msa0631450:CDS | 45.0% | |
| TACCGGACAAGTTTGCAGAA+GGG | + | chr4_3:14390493-14390512 | Msa0631450:CDS | 45.0% | |
| GTTGATCCTATGCTTGCAAC+AGG | + | chr4_3:14390531-14390550 | Msa0631450:CDS | 45.0% | |
| CATGCGTATTCATTAACGCC+GGG | + | chr4_3:14390586-14390605 | Msa0631450:intron | 45.0% | |
| TTGTAGCGGTGGAAAAATGG+TGG | + | chr4_3:14390843-14390862 | Msa0631450:intron | 45.0% | |
| ATCATGCCTCACTATGACTC+TGG | - | chr4_3:14391025-14391044 | None:intergenic | 45.0% | |
| TCCAACATGTGGGGCATATT+GGG | - | chr4_3:14391130-14391149 | None:intergenic | 45.0% | |
| ATCCAACATGTGGGGCATAT+TGG | - | chr4_3:14391131-14391150 | None:intergenic | 45.0% | |
| GTCACAATGTGCCCATAAGA+CGG | - | chr4_3:14391727-14391746 | None:intergenic | 45.0% | |
| GATTGTTCACGCGTGTTTGA+AGG | + | chr4_3:14392144-14392163 | Msa0631450:intron | 45.0% | |
| ! | CCGACTGTCTGAGACAATAA+AGG | + | chr4_3:14392359-14392378 | Msa0631450:intron | 45.0% |
| GGTCAATTAGGGGTAAATCG+AGG | + | chr4_3:14392848-14392867 | Msa0631450:intron | 45.0% | |
| CTAGGAGTGGCAATATGGAT+GGG | - | chr4_3:14393034-14393053 | None:intergenic | 45.0% | |
| TCTAGGAGTGGCAATATGGA+TGG | - | chr4_3:14393035-14393054 | None:intergenic | 45.0% | |
| TCCATATTGCCACTCCTAGA+TGG | + | chr4_3:14393035-14393054 | Msa0631450:intron | 45.0% | |
| TCCATCTAGGAGTGGCAATA+TGG | - | chr4_3:14393039-14393058 | None:intergenic | 45.0% | |
| ACGCTCAATGCTATTAGGCT+AGG | + | chr4_3:14393243-14393262 | Msa0631450:intron | 45.0% | |
| TACACGGTCTCTGTTCAATG+TGG | + | chr4_3:14393373-14393392 | Msa0631450:intron | 45.0% | |
| ACACGGTCTCTGTTCAATGT+GGG | + | chr4_3:14393374-14393393 | Msa0631450:intron | 45.0% | |
| !! | TCGCTTAGCTTTTCAAGAGC+CGG | - | chr4_3:14394639-14394658 | None:intergenic | 45.0% |
| TGCAGGCTTCATGTGTATAC+TGG | + | chr4_3:14394738-14394757 | Msa0631450:intron | 45.0% | |
| GATCCCGTTCTTAATGACCA+AGG | + | chr4_3:14394768-14394787 | Msa0631450:CDS | 45.0% | |
| CGTTCTTAATGACCAAGGGT+TGG | + | chr4_3:14394773-14394792 | Msa0631450:intron | 45.0% | |
| !!! | TTATTTATACTAATATTTTT+AGG | + | chr4_3:14389645-14389664 | Msa0631450:intron | 5.0% |
| !!! | TTTTAACTAAATATTAAATA+CGG | + | chr4_3:14389722-14389741 | Msa0631450:intron | 5.0% |
| !! | GAAAAAAAAAATAATATTAT+GGG | - | chr4_3:14394679-14394698 | None:intergenic | 5.0% |
| !! | TGAAAAAAAAAATAATATTA+TGG | - | chr4_3:14394680-14394699 | None:intergenic | 5.0% |
| TGGAGAGATACAATCACCGC+TGG | + | chr4_3:14389551-14389570 | Msa0631450:CDS | 50.0% | |
| GGAGAGATACAATCACCGCT+GGG | + | chr4_3:14389552-14389571 | Msa0631450:CDS | 50.0% | |
| GCAAGACCAGCTCTCAAGAT+TGG | - | chr4_3:14389927-14389946 | None:intergenic | 50.0% | |
| GACCCTTCTGCAAACTTGTC+CGG | - | chr4_3:14390498-14390517 | None:intergenic | 50.0% | |
| GGTTTGCCAGAGTCATAGTG+AGG | + | chr4_3:14391016-14391035 | Msa0631450:intron | 50.0% | |
| CAACATGTGGGGCATATTGG+GGG | - | chr4_3:14391128-14391147 | None:intergenic | 50.0% | |
| CCAACATGTGGGGCATATTG+GGG | - | chr4_3:14391129-14391148 | None:intergenic | 50.0% | |
| AACAAGGCCCACTAAGAAGC+TGG | + | chr4_3:14392798-14392817 | Msa0631450:intron | 50.0% | |
| ACAAGGCCCACTAAGAAGCT+GGG | + | chr4_3:14392799-14392818 | Msa0631450:intron | 50.0% | |
| TCTCTCCCCAGCTTCTTAGT+GGG | - | chr4_3:14392808-14392827 | None:intergenic | 50.0% | |
| TTCTCTCCCCAGCTTCTTAG+TGG | - | chr4_3:14392809-14392828 | None:intergenic | 50.0% | |
| GTCCGACCTGAGGTCAATTA+GGG | + | chr4_3:14392837-14392856 | Msa0631450:intron | 50.0% | |
| TCCGACCTGAGGTCAATTAG+GGG | + | chr4_3:14392838-14392857 | Msa0631450:intron | 50.0% | |
| ACCCCTAATTGACCTCAGGT+CGG | - | chr4_3:14392842-14392861 | None:intergenic | 50.0% | |
| GGCGAGCCATAACTAACAGA+TGG | + | chr4_3:14392889-14392908 | Msa0631450:intron | 50.0% | |
| CACCCCTCATCTTGCAAGTT+AGG | - | chr4_3:14393336-14393355 | None:intergenic | 50.0% | |
| CATGCACTTTGGGTGTGATC+AGG | + | chr4_3:14393751-14393770 | Msa0631450:intron | 50.0% | |
| !! | CTTAGCTTTTCAAGAGCCGG+AGG | - | chr4_3:14394636-14394655 | None:intergenic | 50.0% |
| ! | AAATGTGAGGCACCAACCCT+TGG | - | chr4_3:14394788-14394807 | None:intergenic | 50.0% |
| CATTGATCCAAGGGAGCCTG+TGG | + | chr4_3:14389593-14389612 | Msa0631450:CDS | 55.0% | |
| AGATTGAGTGGGGGATGACC+AGG | - | chr4_3:14391098-14391117 | None:intergenic | 55.0% | |
| GGCGAATCGAGATTGAGTGG+GGG | - | chr4_3:14391107-14391126 | None:intergenic | 55.0% | |
| GGGCGAATCGAGATTGAGTG+GGG | - | chr4_3:14391108-14391127 | None:intergenic | 55.0% | |
| GGGGCGAATCGAGATTGAGT+GGG | - | chr4_3:14391109-14391128 | None:intergenic | 55.0% | |
| CCCCAATATGCCCCACATGT+TGG | + | chr4_3:14391126-14391145 | Msa0631450:intron | 55.0% | |
| ! | CTAGTGAGCGTGGTGGAACA+AGG | + | chr4_3:14392782-14392801 | Msa0631450:intron | 55.0% |
| CAAGGCCCACTAAGAAGCTG+GGG | + | chr4_3:14392800-14392819 | Msa0631450:intron | 55.0% | |
| AGCTGGGGAGAGAACAGAGA+AGG | + | chr4_3:14392815-14392834 | Msa0631450:intron | 55.0% | |
| AACAGAGAAGGTCCGACCTG+AGG | + | chr4_3:14392827-14392846 | Msa0631450:intron | 55.0% | |
| GGTCCGACCTGAGGTCAATT+AGG | + | chr4_3:14392836-14392855 | Msa0631450:intron | 55.0% | |
| AGGGGTAAATCGAGGGAGAG+TGG | + | chr4_3:14392856-14392875 | Msa0631450:intron | 55.0% | |
| GGGGTAAATCGAGGGAGAGT+GGG | + | chr4_3:14392857-14392876 | Msa0631450:intron | 55.0% | |
| AGTTATGGCTCGCCGTGAGT+TGG | - | chr4_3:14392883-14392902 | None:intergenic | 55.0% | |
| ATCTGCTTGCTCGTCACCTC+CGG | + | chr4_3:14394617-14394636 | Msa0631450:CDS | 55.0% | |
| AAGCTAAGCGAGCAGTTCCC+AGG | + | chr4_3:14394648-14394667 | Msa0631450:CDS | 55.0% | |
| AGCTAAGCGAGCAGTTCCCA+GGG | + | chr4_3:14394649-14394668 | Msa0631450:CDS | 55.0% | |
| !! | ATTCCTGGCCTTGGAGATGC+TGG | + | chr4_3:14394879-14394898 | Msa0631450:CDS | 55.0% |
| CTAACAGCCACAGGCTCCCT+TGG | - | chr4_3:14389603-14389622 | None:intergenic | 60.0% | |
| CCAGGTCGAGTGAAGCATGC+TGG | - | chr4_3:14391080-14391099 | None:intergenic | 60.0% | |
| CCAGCATGCTTCACTCGACC+TGG | + | chr4_3:14391077-14391096 | Msa0631450:intron | 60.0% | |
| GGGGGCGAATCGAGATTGAG+TGG | - | chr4_3:14391110-14391129 | None:intergenic | 60.0% | |
| AGGGAGAGTGGGCCAACTCA+CGG | + | chr4_3:14392868-14392887 | Msa0631450:intron | 60.0% | |
| TGCGATCGCCAGCATCTCCA+AGG | - | chr4_3:14394890-14394909 | None:intergenic | 60.0% | |
| GATGCTGGCGATCGCAGCTA+TGG | + | chr4_3:14394894-14394913 | Msa0631450:CDS | 60.0% | |
| TCCACTGAGGCGACTCCCAG+CGG | - | chr4_3:14389570-14389589 | None:intergenic | 65.0% | |
| TCGCCAGCATCTCCAAGGCC+AGG | - | chr4_3:14394885-14394904 | None:intergenic | 65.0% | |
| ACCGCTGGGAGTCGCCTCAG+TGG | + | chr4_3:14389566-14389585 | Msa0631450:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 14389531 | 14395163 | 14389531 | ID=Msa0631450;Name=Msa0631450 |
| chr4_3 | mRNA | 14389531 | 14395163 | 14389531 | ID=Msa0631450-mRNA-1;Parent=Msa0631450;Name=Msa0631450-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.87|1|0.71|0.75|8|240|167 |
| chr4_3 | exon | 14389531 | 14389617 | 14389531 | ID=Msa0631450-mRNA-1:exon:4027;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14389918 | 14389999 | 14389918 | ID=Msa0631450-mRNA-1:exon:4028;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14390250 | 14390298 | 14390250 | ID=Msa0631450-mRNA-1:exon:4029;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14390491 | 14390552 | 14390491 | ID=Msa0631450-mRNA-1:exon:4030;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14393599 | 14393666 | 14393599 | ID=Msa0631450-mRNA-1:exon:4031;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14394615 | 14394670 | 14394615 | ID=Msa0631450-mRNA-1:exon:4032;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14394743 | 14394790 | 14394743 | ID=Msa0631450-mRNA-1:exon:4033;Parent=Msa0631450-mRNA-1 |
| chr4_3 | exon | 14394872 | 14395163 | 14394872 | ID=Msa0631450-mRNA-1:exon:4034;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14389531 | 14389617 | 14389531 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14389918 | 14389999 | 14389918 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14390250 | 14390298 | 14390250 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14390491 | 14390552 | 14390491 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14393599 | 14393666 | 14393599 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14394615 | 14394670 | 14394615 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14394743 | 14394790 | 14394743 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | CDS | 14394872 | 14394923 | 14394872 | ID=Msa0631450-mRNA-1:cds;Parent=Msa0631450-mRNA-1 |
| chr4_3 | three_prime_UTR | 14394924 | 14395163 | 14394924 | ID=Msa0631450-mRNA-1:three_prime_utr;Parent=Msa0631450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
