AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280900 MtrunA17_Chr2g0294971 95.455 110 4 1 1 110 1 109 2.02e-75 223
Msa0280900 MtrunA17_Chr1g0192511 55.056 89 36 1 20 108 24 108 9.00e-33 115
Msa0280900 MtrunA17_Chr7g0271931 51.685 89 38 1 20 103 32 120 9.28e-30 108
Msa0280900 MtrunA17_Chr7g0269721 43.269 104 57 1 14 115 5 108 1.53e-25 96.3
Msa0280900 MtrunA17_Chr1g0192501 47.887 142 58 8 97 228 3 138 9.67e-24 92.4
Msa0280900 MtrunA17_Chr4g0046711 38.532 109 58 3 1 104 1 105 4.94e-21 84.3
Msa0280900 MtrunA17_Chr7g0271941 48.000 125 57 4 110 228 1 123 2.66e-20 83.2
Msa0280900 MtrunA17_Chr2g0294981 100.000 34 0 0 195 228 8 41 1.51e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280900 AT5G49230.1 47.863 234 93 8 1 228 1 211 2.95e-55 176
Msa0280900 AT3G05700.1 44.770 239 105 9 1 228 1 223 7.47e-52 167
Msa0280900 AT5G49230.2 46.154 234 92 8 1 228 1 206 1.69e-51 166
Msa0280900 AT3G06760.1 49.763 211 88 7 23 228 27 224 2.62e-51 166
Msa0280900 AT5G26990.1 44.167 240 104 9 1 228 1 222 6.27e-51 165
Msa0280900 AT3G05700.2 45.178 197 82 8 1 187 1 181 6.25e-43 144
Msa0280900 AT1G56280.1 42.991 214 87 8 20 226 14 199 2.80e-41 140
Msa0280900 AT1G56280.2 44.162 197 78 8 37 226 34 205 9.33e-38 131
Msa0280900 AT4G02200.1 40.415 193 89 6 39 225 37 209 8.93e-34 121
Msa0280900 AT3G06760.2 41.629 221 101 8 23 228 27 234 3.72e-32 117
Msa0280900 AT4G02200.2 39.459 185 86 6 39 217 37 201 2.69e-30 112
Msa0280900 AT4G02200.3 37.681 207 89 7 39 225 37 223 1.21e-29 110
Msa0280900 AT1G02750.1 36.041 197 97 6 39 227 41 216 3.59e-28 106
Msa0280900 AT1G02750.2 30.928 194 95 4 39 227 41 200 4.46e-21 87.8

Find 70 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTCTATCTTCAATTT+AGG 0.061459 2_3:+16001084 Msa0280900:five_prime_UTR
CACTCTCTATCTTCAATTTA+GGG 0.237702 2_3:+16001085 Msa0280900:five_prime_UTR
GCAGGATTGCATTCTCTTCT+TGG 0.245703 2_3:+16003099 Msa0280900:CDS
GTGGTGGTGGTGATGATTTA+AGG 0.255964 2_3:+16001331 Msa0280900:CDS
CTAGTGTAGCAGCTGAAATA+AGG 0.265670 2_3:-16004083 None:intergenic
TGTAGCTGGTATACTATAAT+AGG 0.281627 2_3:+16003863 Msa0280900:three_prime_UTR
CTACACTAGACTGACATAAT+TGG 0.286778 2_3:+16004097 Msa0280900:three_prime_UTR
TCATAATCTTCAGCACAAAA+AGG 0.288334 2_3:-16001369 None:intergenic
ATTACATATTTACTCGATAA+AGG 0.293138 2_3:-16004008 None:intergenic
AAGTTTACGTGCAGCGTAAA+AGG 0.305767 2_3:+16003022 Msa0280900:CDS
AGAAAAGAGTTGAGGGAAGC+AGG 0.309169 2_3:+16003081 Msa0280900:CDS
TTGAATAGGTGCATATTAGA+TGG 0.343964 2_3:-16004051 None:intergenic
AAAGAAACCAACTTTCAAAA+AGG 0.347692 2_3:-16002514 None:intergenic
ACAGCTTCGTCACCAACAAC+TGG 0.357688 2_3:-16003189 None:intergenic
AACGATTGCAACAAAGTATC+AGG 0.362978 2_3:-16003156 None:intergenic
TTTCGAGCTATCGTTTACTA+TGG 0.363939 2_3:-16003244 None:intergenic
TTCAGGTGTGTCCTGCTTGT+GGG 0.376343 2_3:+16002427 Msa0280900:intron
CAAAGTATCAGGTTCGGAAT+TGG 0.385398 2_3:-16003145 None:intergenic
TGGTGGTGGTGATGATTTAA+GGG 0.397394 2_3:+16001332 Msa0280900:CDS
GTTTACTATGGCAGCTTCAA+TGG 0.397661 2_3:-16003232 None:intergenic
TAATGAATGTATCTATTGTT+AGG 0.400511 2_3:+16004027 Msa0280900:three_prime_UTR
AATATGCACCTATTCAAATA+TGG 0.407575 2_3:+16004057 Msa0280900:three_prime_UTR
TAGTGTAGCAGCTGAAATAA+GGG 0.424904 2_3:-16004082 None:intergenic
ATGAATCAGAGTCCATGTTT+TGG 0.426328 2_3:-16001122 None:intergenic
AGCAGTGCATGCACCTGGTT+TGG 0.430739 2_3:+16004149 Msa0280900:three_prime_UTR
CGCCGTTACTATTCTCGATC+CGG 0.436721 2_3:+16001174 Msa0280900:CDS
TAAGGGGACCATATTTGAAT+AGG 0.442155 2_3:-16004065 None:intergenic
AAAACATGGACTCTGATTCA+TGG 0.453838 2_3:+16001124 Msa0280900:exon
GGATTGCATTCTCTTCTTGG+AGG 0.458470 2_3:+16003102 Msa0280900:CDS
TTTCAGGTGTGTCCTGCTTG+TGG 0.467996 2_3:+16002426 Msa0280900:intron
CGAAGGTTTGATTTCGTGCA+AGG 0.485172 2_3:+16003796 Msa0280900:CDS
GTTATAATTGCAATTGTAGC+TGG 0.487425 2_3:+16003849 Msa0280900:exon
GTTATTTAGAAAAGAGTTGA+GGG 0.489200 2_3:+16003074 Msa0280900:CDS
GATGCTGAACCTGGTGGTGG+TGG 0.514579 2_3:+16001318 Msa0280900:CDS
AGTATCAGGTTCGGAATTGG+AGG 0.520777 2_3:-16003142 None:intergenic
GCAGGAGCTGATCGCGAGGG+AGG 0.524927 2_3:+16003887 Msa0280900:three_prime_UTR
TTATAACTCATCATCAAGAA+TGG 0.527350 2_3:-16003833 None:intergenic
CAGAGTGGCAGTAGCTAGAT+CGG 0.528724 2_3:+16003928 Msa0280900:three_prime_UTR
CGTTATTTAGAAAAGAGTTG+AGG 0.531210 2_3:+16003073 Msa0280900:CDS
TGGTATACTATAATAGGAGC+AGG 0.532207 2_3:+16003869 Msa0280900:three_prime_UTR
CAGGAGCTGATCGCGAGGGA+GGG 0.532264 2_3:+16003888 Msa0280900:three_prime_UTR
CTAAAAGCAGTGCATGCACC+TGG 0.539621 2_3:+16004144 Msa0280900:three_prime_UTR
TAGCTCGAAAGATGATTTCG+TGG 0.542543 2_3:+16003257 Msa0280900:CDS
TTGCAACAAAGTATCAGGTT+CGG 0.543065 2_3:-16003151 None:intergenic
ATCCTCTTCAAGCTAACACT+GGG 0.551131 2_3:+16001427 Msa0280900:CDS
AGGAGCAGGAGCTGATCGCG+AGG 0.557148 2_3:+16003883 Msa0280900:three_prime_UTR
CATCCTCTTCAAGCTAACAC+TGG 0.567489 2_3:+16001426 Msa0280900:CDS
CTTCTCTACTCGATCCTCGT+CGG 0.568903 2_3:-16003770 None:intergenic
GGAAATGATGATGCTGAACC+TGG 0.576479 2_3:+16001309 Msa0280900:CDS
ACCCCAGTGTTAGCTTGAAG+AGG 0.580064 2_3:-16001429 None:intergenic
CGAAAGATGATTTCGTGGAA+AGG 0.582410 2_3:+16003262 Msa0280900:CDS
GGAGCAGGAGCTGATCGCGA+GGG 0.589112 2_3:+16003884 Msa0280900:three_prime_UTR
TTCGGAATTGGAGGAAGCTG+TGG 0.593717 2_3:-16003133 None:intergenic
GAAGGTTTGATTTCGTGCAA+GGG 0.604633 2_3:+16003797 Msa0280900:CDS
CGTAAAAGGAGGGTGAGGAA+AGG 0.608256 2_3:+16003036 Msa0280900:CDS
CAGCTTCGTCACCAACAACT+GGG 0.608504 2_3:-16003188 None:intergenic
TTTACGTGCAGCGTAAAAGG+AGG 0.609185 2_3:+16003025 Msa0280900:CDS
TGCAGCGTAAAAGGAGGGTG+AGG 0.609548 2_3:+16003031 Msa0280900:CDS
AAATCATCACCACCACCACC+AGG 0.612097 2_3:-16001327 None:intergenic
GATGATGCTGAACCTGGTGG+TGG 0.614096 2_3:+16001315 Msa0280900:CDS
TAACTCATCATCAAGAATGG+TGG 0.628185 2_3:-16003830 None:intergenic
TCGTCGGAAAGCTGTACTTG+TGG 0.638527 2_3:-16003754 None:intergenic
AACCGGATCGAGAATAGTAA+CGG 0.650025 2_3:-16001176 None:intergenic
ATCGAGTAGAGAAGACACGA+AGG 0.652664 2_3:+16003779 Msa0280900:CDS
AGTGTAGCAGCTGAAATAAG+GGG 0.660186 2_3:-16004081 None:intergenic
TTACGTGCAGCGTAAAAGGA+GGG 0.661430 2_3:+16003026 Msa0280900:CDS
TTCATTCGAGTGTTACAGAG+TGG 0.673676 2_3:+16003913 Msa0280900:three_prime_UTR
ACAAGTACAGCTTTCCGACG+AGG 0.683663 2_3:+16003756 Msa0280900:CDS
AATGATGATGCTGAACCTGG+TGG 0.756267 2_3:+16001312 Msa0280900:CDS
TCCTCTTCAAGCTAACACTG+GGG 0.784823 2_3:+16001428 Msa0280900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAATGATAATTATGA+TGG - chr2_3:16001206-16001225 None:intergenic 10.0%
!!! AATAAAGATATGTTTAATTT+TGG + chr2_3:16001645-16001664 Msa0280900:intron 10.0%
!!! TTTTATTACATAAATTTGAT+AGG + chr2_3:16002025-16002044 Msa0280900:intron 10.0%
!!! TTTTAATTAAGGTTATACAT+GGG + chr2_3:16001693-16001712 Msa0280900:intron 15.0%
!!! CAACAATTTATTTTAAAATG+TGG + chr2_3:16001772-16001791 Msa0280900:intron 15.0%
!!! TTAAAATGTGGTTATATTTT+AGG + chr2_3:16001784-16001803 Msa0280900:intron 15.0%
!!! TAAAATGTGGTTATATTTTA+GGG + chr2_3:16001785-16001804 Msa0280900:intron 15.0%
!!! TAAAAAATGTACACATTTTT+CGG - chr2_3:16002733-16002752 None:intergenic 15.0%
!!! AAAATGTGTACATTTTTTAA+TGG + chr2_3:16002734-16002753 Msa0280900:intron 15.0%
!!! TTTAGTTTTGTTGAAATTGT+TGG + chr2_3:16001244-16001263 Msa0280900:intron 20.0%
!!! TTTCAGTTTTCACATATATT+AGG + chr2_3:16001541-16001560 Msa0280900:intron 20.0%
!! TTTATTCAAAATTGCAATTG+AGG - chr2_3:16001631-16001650 None:intergenic 20.0%
!!! GTTTTAATTAAGGTTATACA+TGG + chr2_3:16001692-16001711 Msa0280900:intron 20.0%
!!! AAAATGTGGTTATATTTTAG+GGG + chr2_3:16001786-16001805 Msa0280900:intron 20.0%
!!! AAAATATCCTTTTTGAAAGT+TGG + chr2_3:16002507-16002526 Msa0280900:CDS 20.0%
!! AATGCAATAAAATATGAACA+TGG - chr2_3:16002670-16002689 None:intergenic 20.0%
!!! TCAAATAAAATTTGTTTTCC+AGG - chr2_3:16002693-16002712 None:intergenic 20.0%
!!! TCTATATAAAAGTATAGTAC+CGG + chr2_3:16003487-16003506 Msa0280900:intron 20.0%
!! ATTACATATTTACTCGATAA+AGG - chr2_3:16004011-16004030 None:intergenic 20.0%
!! TAATGAATGTATCTATTGTT+AGG + chr2_3:16004027-16004046 Msa0280900:three_prime_UTR 20.0%
!!! ATAATTATGATGGTTCTAAC+CGG - chr2_3:16001196-16001215 None:intergenic 25.0%
!!! GTTTTTAACTTTCAAACACT+TGG + chr2_3:16001667-16001686 Msa0280900:intron 25.0%
!!! ACACTTGGTAGTTTTAATTA+AGG + chr2_3:16001682-16001701 Msa0280900:intron 25.0%
!!! AAATGTGGTTATATTTTAGG+GGG + chr2_3:16001787-16001806 Msa0280900:intron 25.0%
! GTATTTAGTGCAATTTACTT+TGG + chr2_3:16001821-16001840 Msa0280900:intron 25.0%
! AGAAATCATAGATAAGATGA+GGG + chr2_3:16001891-16001910 Msa0280900:intron 25.0%
! CATAAATTTGATAGGTTGTT+TGG + chr2_3:16002033-16002052 Msa0280900:intron 25.0%
! ATATAACATTATGCAGTGTT+TGG + chr2_3:16002123-16002142 Msa0280900:intron 25.0%
! TCTTCATAGAATAGATATAC+AGG + chr2_3:16002174-16002193 Msa0280900:intron 25.0%
! AAAGAAACCAACTTTCAAAA+AGG - chr2_3:16002517-16002536 None:intergenic 25.0%
!! TTCATATTTTATTGCATTCC+TGG + chr2_3:16002672-16002691 Msa0280900:intron 25.0%
! CATGCTAAATATAAACATAC+TGG - chr2_3:16002804-16002823 None:intergenic 25.0%
! TTTATTTCAGTATCGTTAGA+TGG + chr2_3:16002882-16002901 Msa0280900:intron 25.0%
! TAATTAAAACAAGTTGTGTC+TGG + chr2_3:16002945-16002964 Msa0280900:intron 25.0%
! GTTATTTAGAAAAGAGTTGA+GGG + chr2_3:16003074-16003093 Msa0280900:CDS 25.0%
!!! TTTATTTTTAACCCAGTTGT+TGG + chr2_3:16003177-16003196 Msa0280900:CDS 25.0%
! ATGTATATGGATACTATTGT+TGG + chr2_3:16003286-16003305 Msa0280900:intron 25.0%
!!! TAAGTTGTAGGTATTTTTGT+AGG + chr2_3:16003341-16003360 Msa0280900:intron 25.0%
!!! AAGTTGTAGGTATTTTTGTA+GGG + chr2_3:16003342-16003361 Msa0280900:intron 25.0%
! GAGTTAAGTAATCTATATAC+CGG - chr2_3:16003466-16003485 None:intergenic 25.0%
! TTATAACTCATCATCAAGAA+TGG - chr2_3:16003836-16003855 None:intergenic 25.0%
! AATATGCACCTATTCAAATA+TGG + chr2_3:16004057-16004076 Msa0280900:three_prime_UTR 25.0%
ACACTCTCTATCTTCAATTT+AGG + chr2_3:16001084-16001103 Msa0280900:five_prime_UTR 30.0%
CACTCTCTATCTTCAATTTA+GGG + chr2_3:16001085-16001104 Msa0280900:five_prime_UTR 30.0%
!!! TGTTGGTGATGATTTGTTTT+TGG + chr2_3:16001261-16001280 Msa0280900:intron 30.0%
!!! TGTTGTTTCAGATCTGTTTT+TGG + chr2_3:16001284-16001303 Msa0280900:intron 30.0%
!! GTTGTTTCAGATCTGTTTTT+GGG + chr2_3:16001285-16001304 Msa0280900:intron 30.0%
CATAATCTTCAGCACAAAAA+GGG - chr2_3:16001371-16001390 None:intergenic 30.0%
TCATAATCTTCAGCACAAAA+AGG - chr2_3:16001372-16001391 None:intergenic 30.0%
!! GTTATATTTTAGGGGGAAAA+AGG + chr2_3:16001794-16001813 Msa0280900:intron 30.0%
TTTAGTGCAATTTACTTTGG+AGG + chr2_3:16001824-16001843 Msa0280900:intron 30.0%
GAGAAATCATAGATAAGATG+AGG + chr2_3:16001890-16001909 Msa0280900:intron 30.0%
GCTCATTAAAACTAATAAGC+AGG - chr2_3:16002306-16002325 None:intergenic 30.0%
CTGATGATTGTGATAATTGA+TGG + chr2_3:16002390-16002409 Msa0280900:intron 30.0%
! ATTGTGATAATTGATGGCAT+TGG + chr2_3:16002396-16002415 Msa0280900:intron 30.0%
! GCACCATTCATATATGTTTT+CGG + chr2_3:16002588-16002607 Msa0280900:intron 30.0%
ACACCGAAAACATATATGAA+TGG - chr2_3:16002594-16002613 None:intergenic 30.0%
CAATTGATACACAAGTTTGT+TGG + chr2_3:16002631-16002650 Msa0280900:intron 30.0%
CGTTATTTAGAAAAGAGTTG+AGG + chr2_3:16003073-16003092 Msa0280900:CDS 30.0%
!! GATTTCCTTTGCTTTAGAAA+TGG + chr2_3:16003314-16003333 Msa0280900:intron 30.0%
!! ATCATCCATTTCTAAAGCAA+AGG - chr2_3:16003322-16003341 None:intergenic 30.0%
AGAAATGGATGATAAGTTGT+AGG + chr2_3:16003329-16003348 Msa0280900:intron 30.0%
TAGAATATTATTTACCCCAC+CGG + chr2_3:16003444-16003463 Msa0280900:intron 30.0%
TAAGTAATCTATATACCGGT+GGG - chr2_3:16003462-16003481 None:intergenic 30.0%
TTAAGTAATCTATATACCGG+TGG - chr2_3:16003463-16003482 None:intergenic 30.0%
ATCAATGTATGCAGAGTAAA+TGG - chr2_3:16003526-16003545 None:intergenic 30.0%
! GCATACATTGATTAGATTTG+TGG + chr2_3:16003534-16003553 Msa0280900:intron 30.0%
TGATGAAATGTTGTATCCTT+AGG + chr2_3:16003580-16003599 Msa0280900:intron 30.0%
GTTATAATTGCAATTGTAGC+TGG + chr2_3:16003849-16003868 Msa0280900:exon 30.0%
TGTAGCTGGTATACTATAAT+AGG + chr2_3:16003863-16003882 Msa0280900:three_prime_UTR 30.0%
TTGAATAGGTGCATATTAGA+TGG - chr2_3:16004054-16004073 None:intergenic 30.0%
! ATTTTATTAGGTACCAAACC+AGG - chr2_3:16004165-16004184 None:intergenic 30.0%
!!! CCATGTTTTGGTGGAAAATT+CGG - chr2_3:16001113-16001132 None:intergenic 35.0%
! ATGAATCAGAGTCCATGTTT+TGG - chr2_3:16001125-16001144 None:intergenic 35.0%
AAAACATGGACTCTGATTCA+TGG + chr2_3:16001124-16001143 Msa0280900:exon 35.0%
!!! GGATTCGCTACTTTTAAGAT+GGG - chr2_3:16001961-16001980 None:intergenic 35.0%
CATCTTAAAAGTAGCGAATC+CGG + chr2_3:16001960-16001979 Msa0280900:intron 35.0%
CATACTAACTTTCCCATATC+CGG - chr2_3:16001982-16002001 None:intergenic 35.0%
TAGTATGAGTTTGTGTTGAG+TGG + chr2_3:16001995-16002014 Msa0280900:intron 35.0%
CTGTTCTACCAATACTTGTT+TGG + chr2_3:16002255-16002274 Msa0280900:intron 35.0%
CTTGAACACCAAACAAGTAT+TGG - chr2_3:16002266-16002285 None:intergenic 35.0%
GACAAAGACTGACTAAAACA+TGG - chr2_3:16002328-16002347 None:intergenic 35.0%
!!! GGTTGGTGTTTCTTTGTTTT+TGG + chr2_3:16002357-16002376 Msa0280900:intron 35.0%
!!! TGGCATTGGTTATACTTTTC+AGG + chr2_3:16002410-16002429 Msa0280900:intron 35.0%
GAAAAACTTTGCATGTTGAG+TGG - chr2_3:16002487-16002506 None:intergenic 35.0%
! TTGCAACAAAGTATCAGGTT+CGG - chr2_3:16003154-16003173 None:intergenic 35.0%
! AACGATTGCAACAAAGTATC+AGG - chr2_3:16003159-16003178 None:intergenic 35.0%
TTTCGAGCTATCGTTTACTA+TGG - chr2_3:16003247-16003266 None:intergenic 35.0%
! TTCGTGGAAAGGTATGTATA+TGG + chr2_3:16003273-16003292 Msa0280900:intron 35.0%
AAGTAATCTATATACCGGTG+GGG - chr2_3:16003461-16003480 None:intergenic 35.0%
AATGTATGCAGAGTAAATGG+CGG - chr2_3:16003523-16003542 None:intergenic 35.0%
! ATTTGTGGACACTTTGTTTG+AGG + chr2_3:16003549-16003568 Msa0280900:intron 35.0%
GTATCCTTAGGAATAATGTC+TGG + chr2_3:16003592-16003611 Msa0280900:intron 35.0%
GAAACCAGACATTATTCCTA+AGG - chr2_3:16003599-16003618 None:intergenic 35.0%
CTATTACAGTTCAAGTCACA+TGG - chr2_3:16003621-16003640 None:intergenic 35.0%
! TACTGTCAGACTACATGTTT+TGG - chr2_3:16003717-16003736 None:intergenic 35.0%
TAACTCATCATCAAGAATGG+TGG - chr2_3:16003833-16003852 None:intergenic 35.0%
TGGTATACTATAATAGGAGC+AGG + chr2_3:16003869-16003888 Msa0280900:three_prime_UTR 35.0%
TAAGGGGACCATATTTGAAT+AGG - chr2_3:16004068-16004087 None:intergenic 35.0%
TAGTGTAGCAGCTGAAATAA+GGG - chr2_3:16004085-16004104 None:intergenic 35.0%
CTACACTAGACTGACATAAT+TGG + chr2_3:16004097-16004116 Msa0280900:three_prime_UTR 35.0%
GGCTAACATAAAAAAGACTC+TGG + chr2_3:16004118-16004137 Msa0280900:three_prime_UTR 35.0%
! CCGAATTTTCCACCAAAACA+TGG + chr2_3:16001110-16001129 Msa0280900:exon 40.0%
!! AATCAGAGTCCATGTTTTGG+TGG - chr2_3:16001122-16001141 None:intergenic 40.0%
AACCGGATCGAGAATAGTAA+CGG - chr2_3:16001179-16001198 None:intergenic 40.0%
!!! GTTTCAGATCTGTTTTTGGG+TGG + chr2_3:16001288-16001307 Msa0280900:intron 40.0%
!! TGGTGGTGGTGATGATTTAA+GGG + chr2_3:16001332-16001351 Msa0280900:CDS 40.0%
ATCCTCTTCAAGCTAACACT+GGG + chr2_3:16001427-16001446 Msa0280900:CDS 40.0%
!! ATTTTAGGGGGAAAAAGGCT+TGG + chr2_3:16001799-16001818 Msa0280900:intron 40.0%
!!! CGGATTCGCTACTTTTAAGA+TGG - chr2_3:16001962-16001981 None:intergenic 40.0%
AAAAGTAGCGAATCCGGATA+TGG + chr2_3:16001966-16001985 Msa0280900:intron 40.0%
AAAGTAGCGAATCCGGATAT+GGG + chr2_3:16001967-16001986 Msa0280900:intron 40.0%
TCAGTCTTTGTCCATTGTCA+TGG + chr2_3:16002336-16002355 Msa0280900:intron 40.0%
TCTTTGTCCATTGTCATGGT+TGG + chr2_3:16002340-16002359 Msa0280900:intron 40.0%
AGAAACACCAACCATGACAA+TGG - chr2_3:16002350-16002369 None:intergenic 40.0%
! TGCACGTAAACTTCTGGTTA+TGG - chr2_3:16003015-16003034 None:intergenic 40.0%
AAGTTTACGTGCAGCGTAAA+AGG + chr2_3:16003022-16003041 Msa0280900:CDS 40.0%
! CAAAGTATCAGGTTCGGAAT+TGG - chr2_3:16003148-16003167 None:intergenic 40.0%
GTTTACTATGGCAGCTTCAA+TGG - chr2_3:16003235-16003254 None:intergenic 40.0%
TAGCTCGAAAGATGATTTCG+TGG + chr2_3:16003257-16003276 Msa0280900:CDS 40.0%
CGAAAGATGATTTCGTGGAA+AGG + chr2_3:16003262-16003281 Msa0280900:CDS 40.0%
ATGTATGCAGAGTAAATGGC+GGG - chr2_3:16003522-16003541 None:intergenic 40.0%
ATGTAGTCTGACAGTAGCTA+TGG + chr2_3:16003721-16003740 Msa0280900:intron 40.0%
! GAAGGTTTGATTTCGTGCAA+GGG + chr2_3:16003797-16003816 Msa0280900:CDS 40.0%
TTCATTCGAGTGTTACAGAG+TGG + chr2_3:16003913-16003932 Msa0280900:three_prime_UTR 40.0%
AGTGTAGCAGCTGAAATAAG+GGG - chr2_3:16004084-16004103 None:intergenic 40.0%
CTAGTGTAGCAGCTGAAATA+AGG - chr2_3:16004086-16004105 None:intergenic 40.0%
! GGAAATGATGATGCTGAACC+TGG + chr2_3:16001309-16001328 Msa0280900:CDS 45.0%
! AATGATGATGCTGAACCTGG+TGG + chr2_3:16001312-16001331 Msa0280900:CDS 45.0%
!! GTGGTGGTGGTGATGATTTA+AGG + chr2_3:16001331-16001350 Msa0280900:CDS 45.0%
CATCCTCTTCAAGCTAACAC+TGG + chr2_3:16001426-16001445 Msa0280900:CDS 45.0%
TCCTCTTCAAGCTAACACTG+GGG + chr2_3:16001428-16001447 Msa0280900:CDS 45.0%
TTACGCTGCACGTAAACTTC+TGG - chr2_3:16003021-16003040 None:intergenic 45.0%
TTTACGTGCAGCGTAAAAGG+AGG + chr2_3:16003025-16003044 Msa0280900:CDS 45.0%
TTACGTGCAGCGTAAAAGGA+GGG + chr2_3:16003026-16003045 Msa0280900:CDS 45.0%
AGAAAAGAGTTGAGGGAAGC+AGG + chr2_3:16003081-16003100 Msa0280900:CDS 45.0%
GCAGGATTGCATTCTCTTCT+TGG + chr2_3:16003099-16003118 Msa0280900:CDS 45.0%
GGATTGCATTCTCTTCTTGG+AGG + chr2_3:16003102-16003121 Msa0280900:CDS 45.0%
AGTATCAGGTTCGGAATTGG+AGG - chr2_3:16003145-16003164 None:intergenic 45.0%
ATCGAGTAGAGAAGACACGA+AGG + chr2_3:16003779-16003798 Msa0280900:CDS 45.0%
! CGAAGGTTTGATTTCGTGCA+AGG + chr2_3:16003796-16003815 Msa0280900:CDS 45.0%
!! AGGTGCATGCACTGCTTTTA+GGG - chr2_3:16004145-16004164 None:intergenic 45.0%
!!! TAATAAAAATTGTATTTTTA+AGG + chr2_3:16001509-16001528 Msa0280900:intron 5.0%
CGCCGTTACTATTCTCGATC+CGG + chr2_3:16001174-16001193 Msa0280900:CDS 50.0%
AAATCATCACCACCACCACC+AGG - chr2_3:16001330-16001349 None:intergenic 50.0%
! ACCCCAGTGTTAGCTTGAAG+AGG - chr2_3:16001432-16001451 None:intergenic 50.0%
TCTTCAAGCTAACACTGGGG+TGG + chr2_3:16001431-16001450 Msa0280900:intron 50.0%
CTTCAAGCTAACACTGGGGT+GGG + chr2_3:16001432-16001451 Msa0280900:intron 50.0%
! TTTCAGGTGTGTCCTGCTTG+TGG + chr2_3:16002426-16002445 Msa0280900:intron 50.0%
TTCAGGTGTGTCCTGCTTGT+GGG + chr2_3:16002427-16002446 Msa0280900:intron 50.0%
TCCTGCTTGTGGGCAAAAAG+TGG + chr2_3:16002437-16002456 Msa0280900:CDS 50.0%
CCTGCTTGTGGGCAAAAAGT+GGG + chr2_3:16002438-16002457 Msa0280900:CDS 50.0%
CTGCTTGTGGGCAAAAAGTG+GGG + chr2_3:16002439-16002458 Msa0280900:CDS 50.0%
TTGTGGGCAAAAAGTGGGGA+TGG + chr2_3:16002443-16002462 Msa0280900:CDS 50.0%
CGTAAAAGGAGGGTGAGGAA+AGG + chr2_3:16003036-16003055 Msa0280900:CDS 50.0%
TTCGGAATTGGAGGAAGCTG+TGG - chr2_3:16003136-16003155 None:intergenic 50.0%
CAGCTTCGTCACCAACAACT+GGG - chr2_3:16003191-16003210 None:intergenic 50.0%
ACAGCTTCGTCACCAACAAC+TGG - chr2_3:16003192-16003211 None:intergenic 50.0%
! AAATGGCGGGAACATGCATC+CGG - chr2_3:16003509-16003528 None:intergenic 50.0%
TCGTCGGAAAGCTGTACTTG+TGG - chr2_3:16003757-16003776 None:intergenic 50.0%
ACAAGTACAGCTTTCCGACG+AGG + chr2_3:16003756-16003775 Msa0280900:CDS 50.0%
CTTCTCTACTCGATCCTCGT+CGG - chr2_3:16003773-16003792 None:intergenic 50.0%
CAGAGTGGCAGTAGCTAGAT+CGG + chr2_3:16003928-16003947 Msa0280900:three_prime_UTR 50.0%
!! CAGGTGCATGCACTGCTTTT+AGG - chr2_3:16004146-16004165 None:intergenic 50.0%
CTAAAAGCAGTGCATGCACC+TGG + chr2_3:16004144-16004163 Msa0280900:three_prime_UTR 50.0%
GATGATGCTGAACCTGGTGG+TGG + chr2_3:16001315-16001334 Msa0280900:CDS 55.0%
!!! CCCACTTTTTGCCCACAAGC+AGG - chr2_3:16002441-16002460 None:intergenic 55.0%
TGCAGCGTAAAAGGAGGGTG+AGG + chr2_3:16003031-16003050 Msa0280900:CDS 55.0%
AGCAGTGCATGCACCTGGTT+TGG + chr2_3:16004149-16004168 Msa0280900:three_prime_UTR 55.0%
!! GATGCTGAACCTGGTGGTGG+TGG + chr2_3:16001318-16001337 Msa0280900:CDS 60.0%
AGGAGCAGGAGCTGATCGCG+AGG + chr2_3:16003883-16003902 Msa0280900:three_prime_UTR 65.0%
GGAGCAGGAGCTGATCGCGA+GGG + chr2_3:16003884-16003903 Msa0280900:three_prime_UTR 65.0%
CAGGAGCTGATCGCGAGGGA+GGG + chr2_3:16003888-16003907 Msa0280900:three_prime_UTR 65.0%
GCAGGAGCTGATCGCGAGGG+AGG + chr2_3:16003887-16003906 Msa0280900:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 16001005 16004193 16001005 ID=Msa0280900;Name=Msa0280900
chr2_3 mRNA 16001005 16004193 16001005 ID=Msa0280900-mRNA-1;Parent=Msa0280900;Name=Msa0280900-mRNA-1;_AED=0.19;_eAED=0.19;_QI=124|0.75|0.6|1|1|1|5|338|228
chr2_3 exon 16001005 16001195 16001005 ID=Msa0280900-mRNA-1:exon:6630;Parent=Msa0280900-mRNA-1
chr2_3 exon 16001295 16001449 16001295 ID=Msa0280900-mRNA-1:exon:6631;Parent=Msa0280900-mRNA-1
chr2_3 exon 16002432 16002528 16002432 ID=Msa0280900-mRNA-1:exon:6632;Parent=Msa0280900-mRNA-1
chr2_3 exon 16003022 16003283 16003022 ID=Msa0280900-mRNA-1:exon:6633;Parent=Msa0280900-mRNA-1
chr2_3 exon 16003750 16004193 16003750 ID=Msa0280900-mRNA-1:exon:6634;Parent=Msa0280900-mRNA-1
chr2_3 five_prime_UTR 16001005 16001128 16001005 ID=Msa0280900-mRNA-1:five_prime_utr;Parent=Msa0280900-mRNA-1
chr2_3 CDS 16001129 16001195 16001129 ID=Msa0280900-mRNA-1:cds;Parent=Msa0280900-mRNA-1
chr2_3 CDS 16001295 16001449 16001295 ID=Msa0280900-mRNA-1:cds;Parent=Msa0280900-mRNA-1
chr2_3 CDS 16002432 16002528 16002432 ID=Msa0280900-mRNA-1:cds;Parent=Msa0280900-mRNA-1
chr2_3 CDS 16003022 16003283 16003022 ID=Msa0280900-mRNA-1:cds;Parent=Msa0280900-mRNA-1
chr2_3 CDS 16003750 16003855 16003750 ID=Msa0280900-mRNA-1:cds;Parent=Msa0280900-mRNA-1
chr2_3 three_prime_UTR 16003856 16004193 16003856 ID=Msa0280900-mRNA-1:three_prime_utr;Parent=Msa0280900-mRNA-1
Gene Sequence

>Msa0280900

ATGGACTCTGATTCATGGATCTCTTCTCGTCTCTCTAACTCTTCACGCCGTTACTATTCTCGATCCGATCTGTTTTTGGGTGGAAATGATGATGCTGAACCTGGTGGTGGTGGTGATGATTTAAGGGCTGAATATCTTTGCCCTTTTTGTGCTGAAGATTATGATGTTGTTTCTCTTTGTTGTCACATTGATGAAGAACATCCTCTTCAAGCTAACACTGGGGTGTGTCCTGCTTGTGGGCAAAAAGTGGGGATGGATCTTGTTGCACATATTACCACTCAACATGCAAAGTTTTTCAAAATATCCTTTTTGAAAGTTGAAGTTTACGTGCAGCGTAAAAGGAGGGTGAGGAAAGGAGTCACTAACTCAACGTTATTTAGAAAAGAGTTGAGGGAAGCAGGATTGCATTCTCTTCTTGGAGGTTCTTCGTCCACAGCTTCCTCCAATTCCGAACCTGATACTTTGTTGCAATCGTTTATTTTTAACCCAGTTGTTGGTGACGAAGCTGTGAGCGAACAATCTAATTCTTCCATTGAAGCTGCCATAGTAAACGATAGCTCGAAAGATGATTTCGTGGAAAGAAAACCACAAGTACAGCTTTCCGACGAGGATCGAGTAGAGAAGACACGAAGGTTTGATTTCGTGCAAGGGCTGCTGATGTCCACCATTCTTGATGATGAGTTATAA

Protein sequence

>Msa0280900

MDSDSWISSRLSNSSRRYYSRSDLFLGGNDDAEPGGGGDDLRAEYLCPFCAEDYDVVSLCCHIDEEHPLQANTGVCPACGQKVGMDLVAHITTQHAKFFKISFLKVEVYVQRKRRVRKGVTNSTLFRKELREAGLHSLLGGSSSTASSNSEPDTLLQSFIFNPVVGDEAVSEQSNSSIEAAIVNDSSKDDFVERKPQVQLSDEDRVEKTRRFDFVQGLLMSTILDDEL*