AlfalfaGEDB | Msa0426020

M. sativa cultivar zhongmu-4 / Msa0426020

KEGG: K03626
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
PFAM: PF01849.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426020	XP_003602403.1	94.954	218	3	1	1	210	1	218	2.22e-142	406

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426020	sp\|Q94JX9\|NACA2_ARATH	61.364	220	72	4	1	210	1	217	1.77e-67	209

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426020	G7J922	94.954	218	3	1	1	210	1	218	1.06e-142	406

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0426020	0.857840	1.240678e-62	-8.615850e-47
Msa0016670	Msa0426020	0.840302	9.436065e-58	-8.615850e-47
Msa0017510	Msa0426020	0.816176	6.329025e-52	-8.615850e-47
Msa0017940	Msa0426020	0.807491	4.926031e-50	-8.615850e-47
Msa0024680	Msa0426020	0.845179	4.773670e-59	-8.615850e-47
Msa0027540	Msa0426020	0.837827	4.130036e-57	-8.615850e-47
Msa0028060	Msa0426020	0.805346	1.395557e-49	-8.615850e-47
Msa0029540	Msa0426020	-0.821375	4.175024e-53	-8.615850e-47
Msa0030380	Msa0426020	0.819366	1.206178e-52	-8.615850e-47
Msa0030430	Msa0426020	0.827926	1.194627e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426020	MtrunA17_Chr3g0128051	94.954	218	3	1	1	210	1	218	2.04e-146	406
Msa0426020	MtrunA17_Chr3g0128041	74.123	228	40	5	1	210	1	227	1.62e-98	285
Msa0426020	MtrunA17_Chr7g0255421	66.000	150	38	3	69	210	59	203	8.84e-60	186
Msa0426020	MtrunA17_Chr3g0128591	61.364	132	33	3	83	210	382	499	4.20e-38	137
Msa0426020	MtrunA17_Chr3g0128571	92.857	42	3	0	168	209	21	62	5.47e-20	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426020	AT3G49470.1	61.364	220	72	4	1	210	1	217	1.80e-68	209
Msa0426020	AT3G49470.2	67.614	176	47	3	36	201	33	208	5.77e-63	195
Msa0426020	AT4G10480.1	69.032	155	39	2	64	209	57	211	3.46e-61	190
Msa0426020	AT4G10480.2	69.737	152	37	2	67	209	59	210	8.10e-61	189
Msa0426020	AT1G33040.1	66.013	153	43	2	67	210	57	209	1.55e-59	186
Msa0426020	AT3G12390.1	64.000	150	43	2	69	210	57	203	8.10e-55	174
Msa0426020	AT5G13850.1	67.105	152	40	2	69	210	53	204	4.61e-54	172

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Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGAAAACCTGGGGAAG+TGG	0.520651	3_2:-76447640	None:intergenic
AACCCATTGATGGTGTTACT+AGG	0.392278	3_2:+76449268	Msa0426020:CDS
AAGGCTCTCAAAACTCACAA+TGG	0.552612	3_2:+76449878	Msa0426020:CDS
AATCTCTGTTTCTTTCTTTC+GGG	0.186468	3_2:+76447500	Msa0426020:five_prime_UTR
AATGATGGGACCTGGAGACA+TGG	0.605793	3_2:-76447548	None:intergenic
ACAATATGAACCATTTGATG+TGG	0.584048	3_2:+76447403	Msa0426020:five_prime_UTR
ACAGCCTGAAGAGGAAGAGG+AGG	0.588386	3_2:+76449778	Msa0426020:CDS
ACAGTTCAGGATGCCAGATA+TGG	0.369124	3_2:+76449709	Msa0426020:CDS
ACCACTCTCTCCACATCAAA+TGG	0.446890	3_2:-76447413	None:intergenic
ACCATTTGATGTGGAGAGAG+TGG	0.663331	3_2:+76447412	Msa0426020:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATATGAACCATTTGATG+TGG	+	chr3_2:76447403-76447422	Msa0426020:five_prime_UTR	30.0%
GAAAGAAACAGAGATTAGAT+AGG	-	chr3_2:76447496-76447515	None:intergenic	30.0%
TACTATAAGATTCTACCTTG+AGG	-	chr3_2:76447813-76447832	None:intergenic	30.0%
AGCCTAAAAAGTAAAAGCTA+AGG	-	chr3_2:76448134-76448153	None:intergenic	30.0%
TTTGGATTTCAATACTTAGG+GGG	-	chr3_2:76448231-76448250	None:intergenic	30.0%
CTTTGGATTTCAATACTTAG+GGG	-	chr3_2:76448232-76448251	None:intergenic	30.0%
GAAATCCAAAGAAAATTAGG+GGG	+	chr3_2:76448241-76448260	Msa0426020:intron	30.0%
TGCCAAAGATTCAATACTTA+GGG	+	chr3_2:76448336-76448355	Msa0426020:intron	30.0%
GAATTCTTGTATTCTTGTTC+TGG	+	chr3_2:76448522-76448541	Msa0426020:intron	30.0%
TAATCTATGTTGCATAGGTA+CGG	-	chr3_2:76448557-76448576	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	76447384	76449937	76447384	ID=Msa0426020;Name=Msa0426020
chr3_2	mRNA	76447384	76449937	76447384	ID=Msa0426020-mRNA-1;Parent=Msa0426020;Name=Msa0426020-mRNA-1;_AED=0.20;_eAED=0.20;_QI=166\|0.66\|0.5\|1\|1\|1\|4\|0\|210
chr3_2	exon	76447384	76447651	76447384	ID=Msa0426020-mRNA-1:exon:19691;Parent=Msa0426020-mRNA-1
chr3_2	exon	76447729	76447816	76447729	ID=Msa0426020-mRNA-1:exon:19692;Parent=Msa0426020-mRNA-1
chr3_2	exon	76449196	76449290	76449196	ID=Msa0426020-mRNA-1:exon:19693;Parent=Msa0426020-mRNA-1
chr3_2	exon	76449590	76449937	76449590	ID=Msa0426020-mRNA-1:exon:19694;Parent=Msa0426020-mRNA-1
chr3_2	five_prime_UTR	76447384	76447549	76447384	ID=Msa0426020-mRNA-1:five_prime_utr;Parent=Msa0426020-mRNA-1
chr3_2	CDS	76447550	76447651	76447550	ID=Msa0426020-mRNA-1:cds;Parent=Msa0426020-mRNA-1
chr3_2	CDS	76447729	76447816	76447729	ID=Msa0426020-mRNA-1:cds;Parent=Msa0426020-mRNA-1
chr3_2	CDS	76449196	76449290	76449196	ID=Msa0426020-mRNA-1:cds;Parent=Msa0426020-mRNA-1
chr3_2	CDS	76449590	76449937	76449590	ID=Msa0426020-mRNA-1:cds;Parent=Msa0426020-mRNA-1

Gene Sequence

>Msa0426020

ATGTCTCCAGGTCCCATCATTGACGCTGCCGCCGACGAAGCCACCGACCAACAACTTCCCTCCGTCGACGAAACAACGCTCAAGAACAAACCACTTCCCCAGGAAGAAGATGATGCTCCTATTGTCGAGGATGATAACGATGACGACAAAGACGAATCTGAGGACGAAGAAGACGACGAATCTCCTCAAGGTGGTACTGAAGGTTCAAAGCAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCCATTGATGGTGTTACTAGGGTTATGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTACGTTATATTTGGGGAGGCAAAAATAGAGGACCTGAGCTCTCAGTTGCAGACACAAGCTGCTCAACAGTTCAGGATGCCAGATATGGGATCTATAATGGCAAAACAAGAACAAGGTACTGCAGCTGATGGAGCACAGCCTGAAGAGGAAGAGGAGGTTGATGAAACTGGCGTGGAGGCCCACGACATTGAGCTGGTAATGACACAAGCTGGGGTGTCAAAAGCCAAGGCTGTCAAGGCTCTCAAAACTCACAATGGGGACATTGTTGGTGCCATCATGGAACTAACTAATTAA

Protein sequence

>Msa0426020

MSPGPIIDAAADEATDQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDDDKDESEDEEDDESPQGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVMFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGTAADGAQPEEEEEVDETGVEAHDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN*