AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632410 MtrunA17_Chr4g0009781 70.161 496 114 3 1 464 524 1017 0.0 668
Msa0632410 MtrunA17_Chr4g0010221 70.140 499 117 5 1 467 522 1020 0.0 659
Msa0632410 MtrunA17_Chr4g0010201 71.227 497 109 6 1 464 523 1018 0.0 654
Msa0632410 MtrunA17_Chr4g0010251 69.539 499 116 5 1 467 523 1017 0.0 639
Msa0632410 MtrunA17_Chr4g0010261 67.530 502 124 8 1 465 522 1021 0.0 607
Msa0632410 MtrunA17_Chr4g0010481 74.359 117 28 2 1 115 65 181 4.88e-48 163
Msa0632410 MtrunA17_Chr5g0410261 40.823 316 158 12 1 297 526 831 1.01e-46 173
Msa0632410 MtrunA17_Chr5g0410261 40.566 106 55 2 349 448 949 1052 1.49e-11 67.0
Msa0632410 MtrunA17_Chr5g0410351 32.495 517 279 19 1 465 494 992 6.45e-46 171
Msa0632410 MtrunA17_Chr5g0410301 32.225 481 267 18 1 443 495 954 2.10e-45 169
Msa0632410 MtrunA17_Chr5g0410161 29.795 537 291 15 1 464 641 1164 2.46e-43 164
Msa0632410 MtrunA17_Chr5g0410481 38.014 292 168 7 14 295 498 786 5.64e-39 150
Msa0632410 MtrunA17_Chr5g0410481 36.134 119 68 2 349 464 913 1026 5.26e-13 71.6
Msa0632410 MtrunA17_Chr3g0082811 41.606 274 126 12 8 267 524 777 3.62e-38 148
Msa0632410 MtrunA17_Chr3g0082881 41.135 282 126 12 13 267 528 796 3.65e-38 148
Msa0632410 MtrunA17_Chr2g0316291 27.440 543 304 16 3 465 533 1065 9.56e-38 147
Msa0632410 MtrunA17_Chr3g0085651 30.658 486 272 18 17 465 543 1000 1.41e-36 144
Msa0632410 MtrunA17_Chr3g0084051 29.787 517 277 21 13 460 546 1045 1.00e-35 141
Msa0632410 MtrunA17_Chr5g0414301 30.263 456 262 17 29 464 103 522 1.01e-35 139
Msa0632410 MtrunA17_Chr3g0083751 38.095 231 134 6 40 264 570 797 5.20e-35 139
Msa0632410 MtrunA17_Chr4g0010231 78.947 76 16 0 322 397 68 143 1.17e-34 126
Msa0632410 MtrunA17_Chr8g0356251 37.391 230 135 6 40 264 591 816 8.61e-34 135
Msa0632410 MtrunA17_Chr3g0082891 39.493 276 136 9 13 267 528 793 1.21e-33 134
Msa0632410 MtrunA17_Chr5g0410401 39.161 286 149 11 21 296 399 669 1.43e-33 134
Msa0632410 MtrunA17_Chr6g0456131 27.327 505 293 21 12 462 535 1019 1.75e-33 134
Msa0632410 MtrunA17_Chr5g0430641 28.139 462 261 15 46 467 561 991 2.27e-33 134
Msa0632410 MtrunA17_Chr7g0244231 29.047 451 245 16 48 443 553 983 3.93e-33 133
Msa0632410 MtrunA17_Chr3g0085561 29.526 464 249 15 39 465 548 970 4.69e-33 133
Msa0632410 MtrunA17_Chr3g0083641 34.733 262 156 8 40 291 541 797 2.82e-32 130
Msa0632410 MtrunA17_Chr3g0080871 30.222 450 273 16 11 448 526 946 3.47e-32 130
Msa0632410 MtrunA17_Chr3g0083721 30.144 418 249 16 44 447 512 900 8.19e-32 129
Msa0632410 MtrunA17_Chr5g0415551 36.364 231 133 7 40 264 425 647 8.84e-32 129
Msa0632410 MtrunA17_Chr3g0113791 29.691 485 286 18 15 465 529 992 1.03e-31 129
Msa0632410 MtrunA17_Chr3g0085331 29.158 463 262 17 39 464 579 1012 1.18e-31 129
Msa0632410 MtrunA17_Chr5g0415471 29.828 466 285 18 15 465 542 980 2.08e-31 128
Msa0632410 MtrunA17_Chr3g0083621 38.095 231 132 7 40 264 576 801 4.13e-31 127
Msa0632410 MtrunA17_Chr5g0414311 28.361 476 288 16 9 463 538 981 7.98e-31 126
Msa0632410 MtrunA17_Chr3g0083681 34.866 261 155 8 40 291 542 796 8.14e-31 126
Msa0632410 MtrunA17_Chr3g0082871 46.857 175 81 5 13 185 528 692 1.17e-30 125
Msa0632410 MtrunA17_Chr3g0113781 29.247 465 245 15 15 464 324 719 1.30e-30 125
Msa0632410 MtrunA17_Chr3g0086091 36.078 255 148 8 17 265 344 589 1.72e-30 125
Msa0632410 MtrunA17_Chr3g0089871 28.261 460 247 20 36 447 566 990 6.79e-30 124
Msa0632410 MtrunA17_Chr1g0164391 28.976 459 267 17 44 462 574 1013 6.95e-30 123
Msa0632410 MtrunA17_Chr3g0113481 36.800 250 145 7 15 262 529 767 8.40e-30 123
Msa0632410 MtrunA17_Chr1g0164581 28.249 531 291 18 14 465 528 1047 1.06e-29 123
Msa0632410 MtrunA17_Chr3g0082131 28.249 531 291 18 14 465 552 1071 1.09e-29 123
Msa0632410 MtrunA17_Chr1g0164611 36.179 246 143 10 10 248 545 783 1.15e-29 123
Msa0632410 MtrunA17_Chr3g0086181 33.922 283 166 9 44 317 557 827 1.48e-29 122
Msa0632410 MtrunA17_Chr5g0430141 29.025 441 254 16 51 443 564 993 1.53e-29 122
Msa0632410 MtrunA17_Chr6g0468451 29.117 419 251 14 66 465 566 957 1.80e-29 122
Msa0632410 MtrunA17_Chr5g0431051 29.481 424 247 16 51 443 564 966 1.83e-29 122
Msa0632410 MtrunA17_Chr5g0430341 28.471 425 250 15 51 443 106 508 2.13e-29 120
Msa0632410 MtrunA17_Chr3g0087581 32.698 315 182 11 17 317 534 832 2.17e-29 122
Msa0632410 MtrunA17_Chr3g0086151 35.206 267 150 10 17 275 533 784 3.06e-29 121
Msa0632410 MtrunA17_Chr8g0352831 34.944 269 152 9 10 266 552 809 3.28e-29 121
Msa0632410 MtrunA17_Chr5g0430511 28.333 420 248 14 68 443 576 986 4.14e-29 121
Msa0632410 MtrunA17_Chr5g0429961 26.651 424 259 14 51 443 559 961 5.28e-29 120
Msa0632410 MtrunA17_Chr3g0086161 34.766 256 150 8 17 265 533 778 7.15e-29 120
Msa0632410 MtrunA17_Chr3g0086221 29.091 385 242 13 16 386 531 898 8.52e-29 120
Msa0632410 MtrunA17_Chr3g0089781 35.249 261 151 9 11 264 541 790 1.25e-28 119
Msa0632410 MtrunA17_Chr3g0086621 34.340 265 155 8 17 275 533 784 1.39e-28 119
Msa0632410 MtrunA17_Chr6g0470081 27.570 428 241 12 66 444 570 977 1.42e-28 119
Msa0632410 MtrunA17_Chr3g0082101 37.736 212 122 7 40 248 527 731 1.45e-28 119
Msa0632410 MtrunA17_Chr4g0008461 35.052 291 170 10 11 291 522 803 1.50e-28 119
Msa0632410 MtrunA17_Chr1g0168901 33.829 269 163 9 4 266 504 763 1.54e-28 119
Msa0632410 MtrunA17_Chr3g0086071 34.211 266 154 9 17 275 153 404 1.63e-28 119
Msa0632410 MtrunA17_Chr4g0027251 27.941 476 262 18 51 465 565 1020 2.11e-28 119
Msa0632410 MtrunA17_Chr3g0089211 27.907 473 289 14 13 447 590 1048 2.65e-28 119
Msa0632410 MtrunA17_Chr3g0091121 27.984 486 293 18 17 461 160 629 2.75e-28 118
Msa0632410 MtrunA17_Chr3g0085801 36.820 239 139 5 32 264 528 760 2.76e-28 119
Msa0632410 MtrunA17_Chr3g0090371 27.932 469 286 18 17 447 548 1002 3.52e-28 118
Msa0632410 MtrunA17_Chr3g0091061 28.931 477 272 23 17 447 547 1002 3.82e-28 118
Msa0632410 MtrunA17_Chr3g0089251 28.870 478 279 18 13 447 572 1031 6.49e-28 117
Msa0632410 MtrunA17_Chr3g0082391 35.798 257 147 10 17 264 547 794 8.93e-28 117
Msa0632410 MtrunA17_Chr3g0082351 29.412 459 276 17 17 446 545 984 1.04e-27 117
Msa0632410 MtrunA17_Chr2g0309721 29.374 463 255 21 35 447 559 999 1.29e-27 117
Msa0632410 MtrunA17_Chr7g0221481 35.833 240 137 6 39 270 564 794 1.31e-27 116
Msa0632410 MtrunA17_Chr3g0085471 28.918 453 262 18 44 465 574 997 1.46e-27 116
Msa0632410 MtrunA17_Chr3g0082791 36.861 274 144 11 34 291 561 821 1.97e-27 116
Msa0632410 MtrunA17_Chr3g0090431 33.858 254 153 7 17 265 420 663 2.00e-27 116
Msa0632410 MtrunA17_Chr3g0089541 28.482 481 280 20 11 447 545 1005 3.60e-27 115
Msa0632410 MtrunA17_Chr6g0468201 27.083 480 251 16 66 464 171 632 3.86e-27 115
Msa0632410 MtrunA17_Chr3g0083591 29.114 474 275 19 17 446 509 965 4.69e-27 115
Msa0632410 MtrunA17_Chr3g0090141 34.766 256 148 9 17 265 548 791 6.30e-27 114
Msa0632410 MtrunA17_Chr3g0090651 35.271 258 144 11 17 264 547 791 6.33e-27 114
Msa0632410 MtrunA17_Chr3g0084031 28.088 502 262 21 39 460 571 1053 7.32e-27 114
Msa0632410 MtrunA17_Chr4g0025391 26.069 491 281 18 10 447 539 1000 8.25e-27 114
Msa0632410 MtrunA17_Chr5g0430441 27.700 426 257 15 48 443 560 964 8.67e-27 114
Msa0632410 MtrunA17_Chr3g0089991 34.483 261 153 8 11 264 545 794 1.08e-26 114
Msa0632410 MtrunA17_Chr6g0470021 27.593 482 258 15 14 444 425 866 1.15e-26 114
Msa0632410 MtrunA17_Chr3g0087701 33.779 299 169 10 28 313 544 826 1.24e-26 114
Msa0632410 MtrunA17_Chr3g0089421 29.025 472 255 20 30 447 559 1004 1.28e-26 114
Msa0632410 MtrunA17_Chr3g0084811 34.100 261 157 8 40 291 716 970 1.28e-26 114
Msa0632410 MtrunA17_Chr1g0169901 29.295 454 262 16 42 462 562 989 1.78e-26 113
Msa0632410 MtrunA17_Chr6g0468121 26.763 482 253 15 66 464 567 1031 2.12e-26 113
Msa0632410 MtrunA17_Chr3g0087301 26.679 521 285 19 28 464 525 1032 2.49e-26 112
Msa0632410 MtrunA17_Chr8g0348931 28.931 477 277 21 13 447 550 1006 2.61e-26 112
Msa0632410 MtrunA17_Chr6g0456121 28.189 486 287 17 16 465 516 975 2.61e-26 112
Msa0632410 MtrunA17_Chr1g0147141 34.364 291 167 9 10 291 543 818 2.98e-26 112
Msa0632410 MtrunA17_Chr3g0091081 27.701 509 283 24 11 460 541 1023 3.86e-26 112
Msa0632410 MtrunA17_Chr6g0468101 26.619 417 260 12 66 465 527 914 7.68e-26 111
Msa0632410 MtrunA17_Chr1g0164631 29.730 444 272 17 17 447 553 969 8.03e-26 111
Msa0632410 MtrunA17_Chr3g0082321 35.965 228 130 8 44 264 519 737 8.46e-26 111
Msa0632410 MtrunA17_Chr8g0392511 34.694 245 141 10 26 263 118 350 8.80e-26 107
Msa0632410 MtrunA17_Chr3g0087841 34.766 256 148 9 17 265 548 791 8.87e-26 111
Msa0632410 MtrunA17_Chr3g0089501 34.866 261 152 8 11 264 539 788 8.99e-26 111
Msa0632410 MtrunA17_Chr6g0484551 35.433 254 149 7 17 265 522 765 1.00e-25 110
Msa0632410 MtrunA17_Chr3g0085931 27.163 416 262 13 66 465 568 958 1.26e-25 110
Msa0632410 MtrunA17_Chr3g0089601 34.866 261 152 8 11 264 539 788 1.30e-25 110
Msa0632410 MtrunA17_Chr5g0430581 28.899 436 257 18 55 467 555 960 1.35e-25 110
Msa0632410 MtrunA17_Chr3g0089441 34.483 261 152 8 11 264 48 296 1.62e-25 110
Msa0632410 MtrunA17_Chr6g0468151 26.829 492 243 15 66 462 572 1041 1.64e-25 110
Msa0632410 MtrunA17_Chr3g0082311 35.965 228 130 8 44 264 573 791 2.42e-25 110
Msa0632410 MtrunA17_Chr3g0092241 36.441 236 135 8 36 264 563 790 3.12e-25 109
Msa0632410 MtrunA17_Chr4g0020501 28.401 419 241 15 55 460 463 835 3.67e-25 109
Msa0632410 MtrunA17_Chr6g0470011 26.995 426 244 12 66 443 570 976 4.15e-25 109
Msa0632410 MtrunA17_Chr5g0430721 28.795 448 233 17 73 467 619 1033 4.32e-25 109
Msa0632410 MtrunA17_Chr6g0468271 27.511 458 258 17 66 466 563 1003 6.27e-25 108
Msa0632410 MtrunA17_Chr3g0085711 34.894 235 142 6 36 264 122 351 6.97e-25 108
Msa0632410 MtrunA17_Chr2g0282991 35.741 263 142 10 14 264 542 789 7.65e-25 108
Msa0632410 MtrunA17_Chr3g0089651 33.977 259 153 9 13 264 547 794 7.73e-25 108
Msa0632410 MtrunA17_Chr3g0090401 33.203 256 132 10 17 265 759 982 1.20e-24 107
Msa0632410 MtrunA17_Chr1g0155321 27.064 436 265 15 68 467 570 988 1.62e-24 107
Msa0632410 MtrunA17_Chr6g0467961 38.251 183 106 4 66 248 564 739 3.01e-24 106
Msa0632410 MtrunA17_Chr3g0084081 34.296 277 145 11 6 267 539 793 3.45e-24 106
Msa0632410 MtrunA17_Chr5g0430291 30.193 467 251 20 47 467 558 995 4.24e-24 106
Msa0632410 MtrunA17_Chr3g0092261 34.510 255 149 9 17 264 591 834 6.65e-24 105
Msa0632410 MtrunA17_Chr3g0085501 26.856 458 266 17 44 464 584 1009 7.63e-24 105
Msa0632410 MtrunA17_Chr5g0430621 25.056 443 275 10 47 443 557 988 9.12e-24 105
Msa0632410 MtrunA17_Chr6g0470001 28.205 429 237 14 66 444 177 584 9.92e-24 104
Msa0632410 MtrunA17_Chr3g0085131 33.761 234 148 5 13 245 531 758 1.23e-23 104
Msa0632410 MtrunA17_Chr3g0090691 34.746 236 138 9 36 264 564 790 1.53e-23 104
Msa0632410 MtrunA17_Chr3g0089961 34.100 261 154 9 11 264 544 793 1.69e-23 104
Msa0632410 MtrunA17_Chr3g0085161 27.481 524 293 23 13 460 395 907 1.73e-23 104
Msa0632410 MtrunA17_Chr3g0089471 36.493 211 120 6 60 264 636 838 2.04e-23 103
Msa0632410 MtrunA17_Chr6g0468021 27.488 422 237 11 66 444 564 959 2.28e-23 103
Msa0632410 MtrunA17_Chr3g0085551 31.907 257 156 8 17 264 425 671 2.47e-23 103
Msa0632410 MtrunA17_Chr5g0414161 35.821 201 115 8 51 248 56 245 2.60e-23 101
Msa0632410 MtrunA17_Chr3g0089761 34.363 259 151 10 13 264 543 789 2.92e-23 103
Msa0632410 MtrunA17_Chr3g0089591 36.493 211 120 6 60 264 639 841 3.42e-23 103
Msa0632410 MtrunA17_Chr3g0085091 27.238 525 293 22 13 460 537 1049 5.19e-23 102
Msa0632410 MtrunA17_Chr3g0085751 27.711 498 276 20 24 449 541 1026 7.03e-23 102
Msa0632410 MtrunA17_Chr2g0299151 26.580 459 263 19 51 461 569 1001 1.22e-22 101
Msa0632410 MtrunA17_Chr3g0084971 33.202 253 154 9 17 264 540 782 2.03e-22 100
Msa0632410 MtrunA17_Chr3g0085451 34.389 221 132 6 51 265 554 767 3.60e-22 100
Msa0632410 MtrunA17_Chr3g0089811 33.333 267 157 9 36 291 563 819 3.87e-22 100
Msa0632410 MtrunA17_Chr5g0429951 28.319 452 251 19 48 467 562 972 4.29e-22 100
Msa0632410 MtrunA17_Chr1g0155991 26.914 431 251 13 68 446 572 990 6.37e-22 99.4
Msa0632410 MtrunA17_Chr5g0415481 38.854 157 91 4 63 219 149 300 6.45e-22 98.2
Msa0632410 MtrunA17_Chr3g0091011 35.176 199 123 4 13 211 513 705 6.52e-22 99.4
Msa0632410 MtrunA17_Chr3g0123111 26.128 421 252 11 66 440 565 972 6.72e-22 99.4
Msa0632410 MtrunA17_Chr3g0087731 25.977 512 280 19 29 465 349 836 8.72e-22 99.0
Msa0632410 MtrunA17_Chr5g0414181 27.842 431 259 18 56 461 566 969 1.13e-21 98.6
Msa0632410 MtrunA17_Chr3g0091961 44.531 128 69 2 40 166 245 371 1.32e-21 96.7
Msa0632410 MtrunA17_Chr3g0085111 34.389 221 136 5 49 264 566 782 2.00e-21 97.8
Msa0632410 MtrunA17_Chr5g0417251 34.842 221 127 8 51 264 334 544 2.85e-21 97.1
Msa0632410 MtrunA17_Chr3g0086741 31.724 290 175 9 39 317 582 859 3.09e-21 97.1
Msa0632410 MtrunA17_Chr8g0351811 27.603 413 250 14 73 465 97 480 3.52e-21 96.7
Msa0632410 MtrunA17_Chr2g0299091 26.735 490 267 19 10 464 516 948 7.29e-21 96.3
Msa0632410 MtrunA17_Chr3g0085521 37.356 174 105 3 36 209 547 716 8.75e-21 95.9
Msa0632410 MtrunA17_Chr3g0085171 35.354 198 123 4 49 245 555 748 9.39e-21 95.9
Msa0632410 MtrunA17_Chr5g0446611 32.168 286 154 11 43 295 569 847 1.12e-20 95.5
Msa0632410 MtrunA17_Chr6g0468361 30.175 285 168 8 1 274 123 387 1.15e-20 94.4
Msa0632410 MtrunA17_Chr7g0248531 32.411 253 156 8 17 264 535 777 1.25e-20 95.5
Msa0632410 MtrunA17_Chr3g0087541 33.929 224 136 6 51 265 580 800 2.98e-20 94.4
Msa0632410 MtrunA17_Chr2g0299121 26.839 503 250 22 10 464 542 974 6.09e-20 93.2
Msa0632410 MtrunA17_Chr4g0071011 27.473 455 241 20 66 467 64 482 1.01e-19 91.7
Msa0632410 MtrunA17_Chr5g0430951 35.294 204 120 7 51 252 561 754 1.44e-19 92.0
Msa0632410 MtrunA17_Chr2g0299101 33.088 272 150 12 10 264 542 798 1.91e-19 91.7
Msa0632410 MtrunA17_Chr3g0084061 28.659 492 264 23 44 460 571 1050 3.25e-19 91.3
Msa0632410 MtrunA17_Chr5g0414201 27.553 421 256 18 56 466 568 949 3.38e-19 90.9
Msa0632410 MtrunA17_Chr6g0467911 37.000 200 98 7 14 209 534 709 4.29e-19 90.5
Msa0632410 MtrunA17_Chr8g0352861 26.962 497 217 20 6 465 544 931 8.52e-19 89.7
Msa0632410 MtrunA17_Chr7g0255751 37.097 186 112 5 44 226 30 213 1.49e-18 84.3
Msa0632410 MtrunA17_Chr5g0413811 32.110 218 134 6 51 264 340 547 5.89e-18 86.7
Msa0632410 MtrunA17_Chr3g0091971 32.020 203 119 8 70 266 533 722 2.14e-17 85.5
Msa0632410 MtrunA17_Chr3g0082371 33.184 223 124 8 63 275 197 404 2.36e-17 84.3
Msa0632410 MtrunA17_Chr2g0282891 37.013 154 87 5 17 169 218 362 2.21e-16 80.5
Msa0632410 MtrunA17_Chr3g0089911 40.441 136 76 3 11 145 540 671 5.30e-16 80.9
Msa0632410 MtrunA17_Chr5g0414221 42.553 94 54 0 56 149 53 146 7.07e-16 74.7
Msa0632410 MtrunA17_Chr7g0248221 38.519 135 70 4 17 149 549 672 1.05e-14 77.0
Msa0632410 MtrunA17_Chr1g0189551 37.778 135 71 4 17 149 570 693 1.63e-14 76.3
Msa0632410 MtrunA17_Chr3g0101251 36.364 143 82 4 39 173 536 677 5.01e-14 74.7
Msa0632410 MtrunA17_Chr5g0404741 38.732 142 80 4 42 181 576 712 2.42e-13 72.4
Msa0632410 MtrunA17_Chr3g0092291 39.316 117 66 3 11 126 93 205 4.57e-13 70.9
Msa0632410 MtrunA17_Chr8g0355411 40.367 109 61 2 42 149 561 666 4.92e-13 71.6
Msa0632410 MtrunA17_Chr2g0299141 34.641 153 84 5 10 153 257 402 5.11e-13 70.9
Msa0632410 MtrunA17_Chr5g0433771 33.514 185 98 7 7 188 551 713 8.43e-13 70.9
Msa0632410 MtrunA17_Chr7g0257201 33.577 137 81 4 14 148 559 687 1.11e-11 67.4
Msa0632410 MtrunA17_Chr8g0374541 37.113 97 59 2 54 148 663 759 1.89e-11 66.6
Msa0632410 MtrunA17_Chr6g0468111 40.217 92 55 0 66 157 408 499 2.30e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632410 AT3G14470.1 33.473 239 146 8 17 248 548 780 1.50e-25 110
Msa0632410 AT3G14470.2 33.473 239 146 8 17 248 548 780 1.50e-25 110
Msa0632410 AT3G14460.1 30.769 325 198 10 10 317 536 850 1.97e-22 101
Msa0632410 AT1G69550.1 34.783 253 129 9 51 292 934 1161 1.88e-18 89.4
Msa0632410 AT1G69550.1 35.514 214 105 9 63 267 995 1184 1.15e-15 80.5
Msa0632410 AT1G69550.1 27.557 479 254 17 6 464 803 1208 2.07e-14 76.6
Msa0632410 AT1G69550.1 25.499 451 241 14 28 461 737 1109 3.09e-12 69.7
Msa0632410 AT5G44510.1 27.946 297 183 12 17 290 641 929 1.29e-13 73.9
Msa0632410 AT5G44510.4 27.946 297 183 12 17 290 641 929 1.61e-13 73.6
Msa0632410 AT5G44510.2 27.946 297 183 12 17 290 641 929 1.67e-13 73.6
Msa0632410 AT5G44510.3 27.946 297 183 12 17 290 641 929 1.83e-13 73.6
Msa0632410 AT3G25510.2 25.161 465 261 18 11 465 419 806 8.28e-13 71.2
Msa0632410 AT3G25510.1 25.161 465 261 18 11 465 419 806 8.28e-13 71.2
Msa0632410 AT3G44630.2 51.316 76 35 2 63 137 848 922 8.65e-12 68.2
Msa0632410 AT3G44630.1 51.316 76 35 2 63 137 848 922 8.65e-12 68.2
Msa0632410 AT3G44630.4 51.316 76 35 2 63 137 848 922 8.65e-12 68.2
Msa0632410 AT3G44630.3 51.316 76 35 2 63 137 848 922 9.16e-12 68.2
Msa0632410 AT3G04220.3 35.537 121 70 3 36 148 725 845 1.34e-11 67.4
Msa0632410 AT3G04220.1 35.537 121 70 3 36 148 696 816 1.57e-11 67.4
Msa0632410 AT4G16890.5 26.970 330 167 13 7 294 812 1109 4.05e-11 66.2
Msa0632410 AT4G16890.1 26.970 330 167 13 7 294 821 1118 4.12e-11 66.2

Find 84 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCAATGCTCACAAATTA+AGG 0.231814 4_3:+16380861 Msa0632410:CDS
TAGTTTGGTCAATTTAAATT+TGG 0.233497 4_3:+16381576 Msa0632410:CDS
TATTGATAATGCCTTGATAT+TGG 0.260905 4_3:-16381527 None:intergenic
TACCAACTTCCAAAGATCTT+TGG 0.263797 4_3:-16381164 None:intergenic
GCTAAGCATATGAATTTAAC+AGG 0.285076 4_3:+16381400 Msa0632410:CDS
GAGAGATTTCAAATTGAGTA+TGG 0.308611 4_3:-16381993 None:intergenic
AGGGGACAACTCGAGATAAA+TGG 0.322086 4_3:+16381346 Msa0632410:CDS
GCTTTGAATTGGATTCTTCC+TGG 0.326722 4_3:+16380822 None:intergenic
GAGAGTTGCCCAAAGATCTT+TGG 0.339595 4_3:+16381155 Msa0632410:CDS
ACCAACTTCCAAAGATCTTT+GGG 0.343827 4_3:-16381163 None:intergenic
GTTGAGGCAAATATTCCATT+TGG 0.352868 4_3:-16381669 None:intergenic
AAGAGAAGTTGGAACTTTCC+AGG 0.361598 4_3:-16380840 None:intergenic
CATAGAACTTCAACACTTTG+AGG 0.367054 4_3:-16382135 None:intergenic
TTCATATGCTTAGCTTCTGT+TGG 0.369235 4_3:-16381391 None:intergenic
CATTTCTATTACCAAAAGAT+TGG 0.374852 4_3:+16380885 Msa0632410:CDS
ATATTGCAATCTTGAACAAT+TGG 0.387028 4_3:-16381614 None:intergenic
ATCAAGGCATTATCAATAGA+TGG 0.402232 4_3:+16381532 Msa0632410:CDS
ACTTCTATGCCGCATGAGAT+AGG 0.408761 4_3:+16381226 Msa0632410:CDS
TTCCACAACACAAACATATC+AGG 0.408980 4_3:+16381888 Msa0632410:CDS
TAGGAGGATTGAATAATTTG+AGG 0.412930 4_3:+16381326 Msa0632410:CDS
CCTTATTGATCTTTCACCTT+CGG 0.422973 4_3:-16382298 None:intergenic
CCGAAGGTGAAAGATCAATA+AGG 0.425278 4_3:+16382298 Msa0632410:CDS
CAGGAAAGTACGTCTTATAA+AGG 0.427844 4_3:+16381907 Msa0632410:CDS
ATGGTTGTTACAGCATGAAA+TGG 0.439045 4_3:+16382098 Msa0632410:CDS
TTAAGTCAGTTATAGACCTT+GGG 0.448665 4_3:-16381090 None:intergenic
TGAGCATTGAGAAGAGAAGT+TGG 0.451834 4_3:-16380851 None:intergenic
ATCTTACCTCTATACCTGAA+TGG 0.459938 4_3:+16382239 Msa0632410:CDS
TGGTGTGAAATTGTCTAGTT+TGG 0.461269 4_3:+16381561 Msa0632410:CDS
ATAACAGTTACCAATCGATA+AGG 0.470500 4_3:-16381854 None:intergenic
ATTAAGTCAGTTATAGACCT+TGG 0.473139 4_3:-16381091 None:intergenic
GCCCAAAGATCTTTGGAAGT+TGG 0.474845 4_3:+16381162 Msa0632410:CDS
TCTTACCTCTATACCTGAAT+GGG 0.475488 4_3:+16382240 Msa0632410:CDS
TATCTGAAGATACTCTACTT+TGG 0.476434 4_3:-16381966 None:intergenic
GTGCTGAATCTTAACTACAT+AGG 0.478811 4_3:+16380986 Msa0632410:CDS
CAGCATGAAATGGAAAGAAC+TGG 0.482841 4_3:+16382108 Msa0632410:CDS
ATTCTTAGAGTTTGTAAAGT+GGG 0.482931 4_3:-16382202 None:intergenic
TGCTGAATCTTAACTACATA+GGG 0.483549 4_3:+16380987 Msa0632410:CDS
TATAACTGACTTAATTAACT+TGG 0.487247 4_3:+16381099 Msa0632410:CDS
TTCCTGATATGTTTGTGTTG+TGG 0.492504 4_3:-16381890 None:intergenic
TTCATTCTACCAATACTAGC+TGG 0.494273 4_3:-16381022 None:intergenic
GCATGTCAAACGCCTCCAAA+TGG 0.504874 4_3:+16381654 Msa0632410:CDS
AAGTTATTATACAGGTTCAC+TGG 0.505019 4_3:+16380916 Msa0632410:CDS
GGAATGTGCTGAAGCCCCTC+AGG 0.509444 4_3:-16382181 None:intergenic
GCATTATCAATAGATGGATT+CGG 0.512942 4_3:+16381538 Msa0632410:CDS
TGCTTAGCTTCTGTTGGACA+TGG 0.516617 4_3:-16381385 None:intergenic
AGGAGGATTGAATAATTTGA+GGG 0.520552 4_3:+16381327 Msa0632410:CDS
AAATCTAAAACAAGTGAGCT+AGG 0.526340 4_3:+16381307 Msa0632410:CDS
GGATTTGTCTAGAACTTGAC+AGG 0.528715 4_3:-16380961 None:intergenic
AGTCTTGAAACCTTATCGAT+TGG 0.534509 4_3:+16381844 Msa0632410:CDS
AAAATGAAATATTTACCTGA+GGG 0.535032 4_3:+16382166 Msa0632410:CDS
CTATTACCAAAAGATTGGAA+TGG 0.546031 4_3:+16380890 Msa0632410:CDS
ACAACTCGAGATAAATGGCT+TGG 0.551914 4_3:+16381351 Msa0632410:CDS
GAGGCAAATATTCCATTTGG+AGG 0.554566 4_3:-16381666 None:intergenic
CATTCTGCACTCCAATATCA+AGG 0.555191 4_3:+16381516 Msa0632410:CDS
TGGAGGCGTTTGACATGCAA+CGG 0.555636 4_3:-16381649 None:intergenic
TTCATCGATTGACATTGAAG+TGG 0.557218 4_3:+16381434 Msa0632410:CDS
GTAACAAGGTTGAGCTCCCA+AGG 0.558013 4_3:+16381074 Msa0632410:CDS
AGGAAGATTCCAGCTAGTAT+TGG 0.564225 4_3:+16381013 Msa0632410:CDS
TTGTCTAGAACTTGACAGGA+TGG 0.570264 4_3:-16380957 None:intergenic
GATCCGTGCAATGATGAAGA+TGG 0.578357 4_3:+16382079 Msa0632410:CDS
TGATCTTTCTCATTGTAACA+AGG 0.581989 4_3:+16381060 Msa0632410:CDS
GTCATCTTTCCTATCTCATG+CGG 0.589750 4_3:-16381235 None:intergenic
GTAGCGAAGAAGAAATCTCA+AGG 0.592619 4_3:+16381800 Msa0632410:intron
AAGTCTTAGACATCTTGAGT+TGG 0.599330 4_3:+16381186 Msa0632410:CDS
CAACCATCTTCATCATTGCA+CGG 0.601113 4_3:-16382082 None:intergenic
CATCTTGAGTTGGATGATTG+TGG 0.605830 4_3:+16381196 Msa0632410:CDS
GATTCTTAGAGTTTGTAAAG+TGG 0.617114 4_3:-16382203 None:intergenic
AATGTCAATCGATGAAGATG+TGG 0.617722 4_3:-16381427 None:intergenic
ATCTTAACTACATAGGGTCA+AGG 0.620948 4_3:+16380993 Msa0632410:CDS
TTGACTATGCACTCTAGTTG+AGG 0.621511 4_3:-16381685 None:intergenic
AAATGAAATATTTACCTGAG+GGG 0.634211 4_3:+16382167 Msa0632410:CDS
TAGCGAAGAAGAAATCTCAA+GGG 0.636151 4_3:+16381801 Msa0632410:intron
TGTAGTTAAGATTCAGCACA+CGG 0.638814 4_3:-16380982 None:intergenic
TGCATAGTCAATGATAACAA+TGG 0.639380 4_3:+16381697 Msa0632410:CDS
CTCAATTTGAAATCTCTCAG+TGG 0.656330 4_3:+16381998 Msa0632410:CDS
TGATATCAAAGATTGTCCGA+AGG 0.658739 4_3:+16382282 Msa0632410:CDS
TCTAAAACAAGTGAGCTAGG+AGG 0.662934 4_3:+16381310 Msa0632410:CDS
TAAATGGCTTGGAACATCTG+AGG 0.662980 4_3:+16381362 Msa0632410:CDS
GGAGGATTGAATAATTTGAG+GGG 0.674634 4_3:+16381328 Msa0632410:CDS
CTAAGCATATGAATTTAACA+GGG 0.683781 4_3:+16381401 Msa0632410:CDS
AGCGAAGAAGAAATCTCAAG+GGG 0.691044 4_3:+16381802 Msa0632410:intron
TTATCAATAGATGGATTCGG+TGG 0.692618 4_3:+16381541 Msa0632410:CDS
AAGTGGAAACAACACACTGT+TGG 0.711182 4_3:+16381451 Msa0632410:CDS
ATTGCGTATCGAAAATTGCG+AGG 0.711518 4_3:+16382051 Msa0632410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGGAAAAAGTTATTATAC+AGG + chr4_3:16380908-16380927 Msa0632410:CDS 20.0%
!!! TATAACTGACTTAATTAACT+TGG + chr4_3:16381099-16381118 Msa0632410:CDS 20.0%
!! TAGTTTGGTCAATTTAAATT+TGG + chr4_3:16381576-16381595 Msa0632410:CDS 20.0%
!!! CAGGTAAATATTTCATTTTT+GGG - chr4_3:16382165-16382184 None:intergenic 20.0%
!!! TCAGGTAAATATTTCATTTT+TGG - chr4_3:16382166-16382185 None:intergenic 20.0%
!! AAAAATGAAATATTTACCTG+AGG + chr4_3:16382165-16382184 Msa0632410:CDS 20.0%
!! AAAATGAAATATTTACCTGA+GGG + chr4_3:16382166-16382185 Msa0632410:CDS 20.0%
!! AATGGAAAAAGTTATTATAC+AGG + chr4_3:16380908-16380927 Msa0632410:CDS 20.0%
!!! TATAACTGACTTAATTAACT+TGG + chr4_3:16381099-16381118 Msa0632410:CDS 20.0%
!! TAGTTTGGTCAATTTAAATT+TGG + chr4_3:16381576-16381595 Msa0632410:CDS 20.0%
!!! CAGGTAAATATTTCATTTTT+GGG - chr4_3:16382165-16382184 None:intergenic 20.0%
!!! TCAGGTAAATATTTCATTTT+TGG - chr4_3:16382166-16382185 None:intergenic 20.0%
!! AAAAATGAAATATTTACCTG+AGG + chr4_3:16382165-16382184 Msa0632410:CDS 20.0%
!! AAAATGAAATATTTACCTGA+GGG + chr4_3:16382166-16382185 Msa0632410:CDS 20.0%
! CATTTCTATTACCAAAAGAT+TGG + chr4_3:16380885-16380904 Msa0632410:CDS 25.0%
! CTAAGCATATGAATTTAACA+GGG + chr4_3:16381401-16381420 Msa0632410:CDS 25.0%
!!! TATTGATAATGCCTTGATAT+TGG - chr4_3:16381530-16381549 None:intergenic 25.0%
! ATATTGCAATCTTGAACAAT+TGG - chr4_3:16381617-16381636 None:intergenic 25.0%
! TTTCACTTAACAAATCTGAA+AGG + chr4_3:16381766-16381785 Msa0632410:intron 25.0%
! AAATGAAATATTTACCTGAG+GGG + chr4_3:16382167-16382186 Msa0632410:CDS 25.0%
! ATTCTTAGAGTTTGTAAAGT+GGG - chr4_3:16382205-16382224 None:intergenic 25.0%
! CATTTCTATTACCAAAAGAT+TGG + chr4_3:16380885-16380904 Msa0632410:CDS 25.0%
! CTAAGCATATGAATTTAACA+GGG + chr4_3:16381401-16381420 Msa0632410:CDS 25.0%
!!! TATTGATAATGCCTTGATAT+TGG - chr4_3:16381530-16381549 None:intergenic 25.0%
! ATATTGCAATCTTGAACAAT+TGG - chr4_3:16381617-16381636 None:intergenic 25.0%
! TTTCACTTAACAAATCTGAA+AGG + chr4_3:16381766-16381785 Msa0632410:intron 25.0%
! AAATGAAATATTTACCTGAG+GGG + chr4_3:16382167-16382186 Msa0632410:CDS 25.0%
! ATTCTTAGAGTTTGTAAAGT+GGG - chr4_3:16382205-16382224 None:intergenic 25.0%
TTCTCAATGCTCACAAATTA+AGG + chr4_3:16380861-16380880 Msa0632410:CDS 30.0%
CTATTACCAAAAGATTGGAA+TGG + chr4_3:16380890-16380909 Msa0632410:CDS 30.0%
! CTTTTTCCATTCCAATCTTT+TGG - chr4_3:16380899-16380918 None:intergenic 30.0%
AAGTTATTATACAGGTTCAC+TGG + chr4_3:16380916-16380935 Msa0632410:CDS 30.0%
TGCTGAATCTTAACTACATA+GGG + chr4_3:16380987-16381006 Msa0632410:CDS 30.0%
TGATCTTTCTCATTGTAACA+AGG + chr4_3:16381060-16381079 Msa0632410:CDS 30.0%
TTAAGTCAGTTATAGACCTT+GGG - chr4_3:16381093-16381112 None:intergenic 30.0%
ATTAAGTCAGTTATAGACCT+TGG - chr4_3:16381094-16381113 None:intergenic 30.0%
! AAATCTAAAACAAGTGAGCT+AGG + chr4_3:16381307-16381326 Msa0632410:CDS 30.0%
TAGGAGGATTGAATAATTTG+AGG + chr4_3:16381326-16381345 Msa0632410:CDS 30.0%
AGGAGGATTGAATAATTTGA+GGG + chr4_3:16381327-16381346 Msa0632410:CDS 30.0%
GCTAAGCATATGAATTTAAC+AGG + chr4_3:16381400-16381419 Msa0632410:CDS 30.0%
! ATCAAGGCATTATCAATAGA+TGG + chr4_3:16381532-16381551 Msa0632410:CDS 30.0%
! GCATTATCAATAGATGGATT+CGG + chr4_3:16381538-16381557 Msa0632410:CDS 30.0%
TGCATAGTCAATGATAACAA+TGG + chr4_3:16381697-16381716 Msa0632410:CDS 30.0%
ACTTAACAAATCTGAAAGGA+TGG + chr4_3:16381770-16381789 Msa0632410:intron 30.0%
ATAACAGTTACCAATCGATA+AGG - chr4_3:16381857-16381876 None:intergenic 30.0%
TATCTGAAGATACTCTACTT+TGG - chr4_3:16381969-16381988 None:intergenic 30.0%
GAGAGATTTCAAATTGAGTA+TGG - chr4_3:16381996-16382015 None:intergenic 30.0%
GATTCTTAGAGTTTGTAAAG+TGG - chr4_3:16382206-16382225 None:intergenic 30.0%
TTCTCAATGCTCACAAATTA+AGG + chr4_3:16380861-16380880 Msa0632410:CDS 30.0%
CTATTACCAAAAGATTGGAA+TGG + chr4_3:16380890-16380909 Msa0632410:CDS 30.0%
! CTTTTTCCATTCCAATCTTT+TGG - chr4_3:16380899-16380918 None:intergenic 30.0%
AAGTTATTATACAGGTTCAC+TGG + chr4_3:16380916-16380935 Msa0632410:CDS 30.0%
TGCTGAATCTTAACTACATA+GGG + chr4_3:16380987-16381006 Msa0632410:CDS 30.0%
TGATCTTTCTCATTGTAACA+AGG + chr4_3:16381060-16381079 Msa0632410:CDS 30.0%
TTAAGTCAGTTATAGACCTT+GGG - chr4_3:16381093-16381112 None:intergenic 30.0%
ATTAAGTCAGTTATAGACCT+TGG - chr4_3:16381094-16381113 None:intergenic 30.0%
! AAATCTAAAACAAGTGAGCT+AGG + chr4_3:16381307-16381326 Msa0632410:CDS 30.0%
TAGGAGGATTGAATAATTTG+AGG + chr4_3:16381326-16381345 Msa0632410:CDS 30.0%
AGGAGGATTGAATAATTTGA+GGG + chr4_3:16381327-16381346 Msa0632410:CDS 30.0%
GCTAAGCATATGAATTTAAC+AGG + chr4_3:16381400-16381419 Msa0632410:CDS 30.0%
! ATCAAGGCATTATCAATAGA+TGG + chr4_3:16381532-16381551 Msa0632410:CDS 30.0%
! GCATTATCAATAGATGGATT+CGG + chr4_3:16381538-16381557 Msa0632410:CDS 30.0%
TGCATAGTCAATGATAACAA+TGG + chr4_3:16381697-16381716 Msa0632410:CDS 30.0%
ACTTAACAAATCTGAAAGGA+TGG + chr4_3:16381770-16381789 Msa0632410:intron 30.0%
ATAACAGTTACCAATCGATA+AGG - chr4_3:16381857-16381876 None:intergenic 30.0%
TATCTGAAGATACTCTACTT+TGG - chr4_3:16381969-16381988 None:intergenic 30.0%
GAGAGATTTCAAATTGAGTA+TGG - chr4_3:16381996-16382015 None:intergenic 30.0%
GATTCTTAGAGTTTGTAAAG+TGG - chr4_3:16382206-16382225 None:intergenic 30.0%
TGTAGTTAAGATTCAGCACA+CGG - chr4_3:16380985-16381004 None:intergenic 35.0%
GTGCTGAATCTTAACTACAT+AGG + chr4_3:16380986-16381005 Msa0632410:CDS 35.0%
ATCTTAACTACATAGGGTCA+AGG + chr4_3:16380993-16381012 Msa0632410:CDS 35.0%
TTCATTCTACCAATACTAGC+TGG - chr4_3:16381025-16381044 None:intergenic 35.0%
! TTGGAGACTCTTTTACTCAA+TGG + chr4_3:16381118-16381137 Msa0632410:CDS 35.0%
ACCAACTTCCAAAGATCTTT+GGG - chr4_3:16381166-16381185 None:intergenic 35.0%
TACCAACTTCCAAAGATCTT+TGG - chr4_3:16381167-16381186 None:intergenic 35.0%
AAGTCTTAGACATCTTGAGT+TGG + chr4_3:16381186-16381205 Msa0632410:CDS 35.0%
GGAGGATTGAATAATTTGAG+GGG + chr4_3:16381328-16381347 Msa0632410:CDS 35.0%
TTCATATGCTTAGCTTCTGT+TGG - chr4_3:16381394-16381413 None:intergenic 35.0%
AATGTCAATCGATGAAGATG+TGG - chr4_3:16381430-16381449 None:intergenic 35.0%
! TTCATCGATTGACATTGAAG+TGG + chr4_3:16381434-16381453 Msa0632410:CDS 35.0%
! TTATCAATAGATGGATTCGG+TGG + chr4_3:16381541-16381560 Msa0632410:CDS 35.0%
TGGTGTGAAATTGTCTAGTT+TGG + chr4_3:16381561-16381580 Msa0632410:CDS 35.0%
GTTGAGGCAAATATTCCATT+TGG - chr4_3:16381672-16381691 None:intergenic 35.0%
TAGCGAAGAAGAAATCTCAA+GGG + chr4_3:16381801-16381820 Msa0632410:intron 35.0%
AGTCTTGAAACCTTATCGAT+TGG + chr4_3:16381844-16381863 Msa0632410:CDS 35.0%
TTCCACAACACAAACATATC+AGG + chr4_3:16381888-16381907 Msa0632410:CDS 35.0%
TTCCTGATATGTTTGTGTTG+TGG - chr4_3:16381893-16381912 None:intergenic 35.0%
! CAGGAAAGTACGTCTTATAA+AGG + chr4_3:16381907-16381926 Msa0632410:CDS 35.0%
! CTCAATTTGAAATCTCTCAG+TGG + chr4_3:16381998-16382017 Msa0632410:CDS 35.0%
ATGGTTGTTACAGCATGAAA+TGG + chr4_3:16382098-16382117 Msa0632410:CDS 35.0%
CATAGAACTTCAACACTTTG+AGG - chr4_3:16382138-16382157 None:intergenic 35.0%
ATCTTACCTCTATACCTGAA+TGG + chr4_3:16382239-16382258 Msa0632410:CDS 35.0%
TCTTACCTCTATACCTGAAT+GGG + chr4_3:16382240-16382259 Msa0632410:CDS 35.0%
! TTTTACCCATTCAGGTATAG+AGG - chr4_3:16382248-16382267 None:intergenic 35.0%
TGATATCAAAGATTGTCCGA+AGG + chr4_3:16382282-16382301 Msa0632410:CDS 35.0%
TGTAGTTAAGATTCAGCACA+CGG - chr4_3:16380985-16381004 None:intergenic 35.0%
GTGCTGAATCTTAACTACAT+AGG + chr4_3:16380986-16381005 Msa0632410:CDS 35.0%
ATCTTAACTACATAGGGTCA+AGG + chr4_3:16380993-16381012 Msa0632410:CDS 35.0%
TTCATTCTACCAATACTAGC+TGG - chr4_3:16381025-16381044 None:intergenic 35.0%
! TTGGAGACTCTTTTACTCAA+TGG + chr4_3:16381118-16381137 Msa0632410:CDS 35.0%
ACCAACTTCCAAAGATCTTT+GGG - chr4_3:16381166-16381185 None:intergenic 35.0%
TACCAACTTCCAAAGATCTT+TGG - chr4_3:16381167-16381186 None:intergenic 35.0%
AAGTCTTAGACATCTTGAGT+TGG + chr4_3:16381186-16381205 Msa0632410:CDS 35.0%
GGAGGATTGAATAATTTGAG+GGG + chr4_3:16381328-16381347 Msa0632410:CDS 35.0%
TTCATATGCTTAGCTTCTGT+TGG - chr4_3:16381394-16381413 None:intergenic 35.0%
AATGTCAATCGATGAAGATG+TGG - chr4_3:16381430-16381449 None:intergenic 35.0%
! TTCATCGATTGACATTGAAG+TGG + chr4_3:16381434-16381453 Msa0632410:CDS 35.0%
! TTATCAATAGATGGATTCGG+TGG + chr4_3:16381541-16381560 Msa0632410:CDS 35.0%
TGGTGTGAAATTGTCTAGTT+TGG + chr4_3:16381561-16381580 Msa0632410:CDS 35.0%
GTTGAGGCAAATATTCCATT+TGG - chr4_3:16381672-16381691 None:intergenic 35.0%
TAGCGAAGAAGAAATCTCAA+GGG + chr4_3:16381801-16381820 Msa0632410:intron 35.0%
AGTCTTGAAACCTTATCGAT+TGG + chr4_3:16381844-16381863 Msa0632410:CDS 35.0%
TTCCACAACACAAACATATC+AGG + chr4_3:16381888-16381907 Msa0632410:CDS 35.0%
TTCCTGATATGTTTGTGTTG+TGG - chr4_3:16381893-16381912 None:intergenic 35.0%
! CAGGAAAGTACGTCTTATAA+AGG + chr4_3:16381907-16381926 Msa0632410:CDS 35.0%
! CTCAATTTGAAATCTCTCAG+TGG + chr4_3:16381998-16382017 Msa0632410:CDS 35.0%
ATGGTTGTTACAGCATGAAA+TGG + chr4_3:16382098-16382117 Msa0632410:CDS 35.0%
CATAGAACTTCAACACTTTG+AGG - chr4_3:16382138-16382157 None:intergenic 35.0%
ATCTTACCTCTATACCTGAA+TGG + chr4_3:16382239-16382258 Msa0632410:CDS 35.0%
TCTTACCTCTATACCTGAAT+GGG + chr4_3:16382240-16382259 Msa0632410:CDS 35.0%
! TTTTACCCATTCAGGTATAG+AGG - chr4_3:16382248-16382267 None:intergenic 35.0%
TGATATCAAAGATTGTCCGA+AGG + chr4_3:16382282-16382301 Msa0632410:CDS 35.0%
AAGAGAAGTTGGAACTTTCC+AGG - chr4_3:16380843-16380862 None:intergenic 40.0%
!! TGAGCATTGAGAAGAGAAGT+TGG - chr4_3:16380854-16380873 None:intergenic 40.0%
! TTGTCTAGAACTTGACAGGA+TGG - chr4_3:16380960-16380979 None:intergenic 40.0%
! GGATTTGTCTAGAACTTGAC+AGG - chr4_3:16380964-16380983 None:intergenic 40.0%
AGGAAGATTCCAGCTAGTAT+TGG + chr4_3:16381013-16381032 Msa0632410:CDS 40.0%
!! CATCTTGAGTTGGATGATTG+TGG + chr4_3:16381196-16381215 Msa0632410:CDS 40.0%
GTCATCTTTCCTATCTCATG+CGG - chr4_3:16381238-16381257 None:intergenic 40.0%
! TCTAAAACAAGTGAGCTAGG+AGG + chr4_3:16381310-16381329 Msa0632410:CDS 40.0%
ACAACTCGAGATAAATGGCT+TGG + chr4_3:16381351-16381370 Msa0632410:CDS 40.0%
! TAAATGGCTTGGAACATCTG+AGG + chr4_3:16381362-16381381 Msa0632410:CDS 40.0%
AAGTGGAAACAACACACTGT+TGG + chr4_3:16381451-16381470 Msa0632410:CDS 40.0%
CATTCTGCACTCCAATATCA+AGG + chr4_3:16381516-16381535 Msa0632410:CDS 40.0%
GAGGCAAATATTCCATTTGG+AGG - chr4_3:16381669-16381688 None:intergenic 40.0%
TTGACTATGCACTCTAGTTG+AGG - chr4_3:16381688-16381707 None:intergenic 40.0%
GTAGCGAAGAAGAAATCTCA+AGG + chr4_3:16381800-16381819 Msa0632410:intron 40.0%
AGCGAAGAAGAAATCTCAAG+GGG + chr4_3:16381802-16381821 Msa0632410:intron 40.0%
ATTGCGTATCGAAAATTGCG+AGG + chr4_3:16382051-16382070 Msa0632410:CDS 40.0%
CAACCATCTTCATCATTGCA+CGG - chr4_3:16382085-16382104 None:intergenic 40.0%
CAGCATGAAATGGAAAGAAC+TGG + chr4_3:16382108-16382127 Msa0632410:CDS 40.0%
! TGCAGTGATTTTACCCATTC+AGG - chr4_3:16382256-16382275 None:intergenic 40.0%
AAGAGAAGTTGGAACTTTCC+AGG - chr4_3:16380843-16380862 None:intergenic 40.0%
!! TGAGCATTGAGAAGAGAAGT+TGG - chr4_3:16380854-16380873 None:intergenic 40.0%
! TTGTCTAGAACTTGACAGGA+TGG - chr4_3:16380960-16380979 None:intergenic 40.0%
! GGATTTGTCTAGAACTTGAC+AGG - chr4_3:16380964-16380983 None:intergenic 40.0%
AGGAAGATTCCAGCTAGTAT+TGG + chr4_3:16381013-16381032 Msa0632410:CDS 40.0%
!! CATCTTGAGTTGGATGATTG+TGG + chr4_3:16381196-16381215 Msa0632410:CDS 40.0%
GTCATCTTTCCTATCTCATG+CGG - chr4_3:16381238-16381257 None:intergenic 40.0%
! TCTAAAACAAGTGAGCTAGG+AGG + chr4_3:16381310-16381329 Msa0632410:CDS 40.0%
ACAACTCGAGATAAATGGCT+TGG + chr4_3:16381351-16381370 Msa0632410:CDS 40.0%
! TAAATGGCTTGGAACATCTG+AGG + chr4_3:16381362-16381381 Msa0632410:CDS 40.0%
AAGTGGAAACAACACACTGT+TGG + chr4_3:16381451-16381470 Msa0632410:CDS 40.0%
CATTCTGCACTCCAATATCA+AGG + chr4_3:16381516-16381535 Msa0632410:CDS 40.0%
GAGGCAAATATTCCATTTGG+AGG - chr4_3:16381669-16381688 None:intergenic 40.0%
TTGACTATGCACTCTAGTTG+AGG - chr4_3:16381688-16381707 None:intergenic 40.0%
GTAGCGAAGAAGAAATCTCA+AGG + chr4_3:16381800-16381819 Msa0632410:intron 40.0%
AGCGAAGAAGAAATCTCAAG+GGG + chr4_3:16381802-16381821 Msa0632410:intron 40.0%
ATTGCGTATCGAAAATTGCG+AGG + chr4_3:16382051-16382070 Msa0632410:CDS 40.0%
CAACCATCTTCATCATTGCA+CGG - chr4_3:16382085-16382104 None:intergenic 40.0%
CAGCATGAAATGGAAAGAAC+TGG + chr4_3:16382108-16382127 Msa0632410:CDS 40.0%
! TGCAGTGATTTTACCCATTC+AGG - chr4_3:16382256-16382275 None:intergenic 40.0%
GAGAGTTGCCCAAAGATCTT+TGG + chr4_3:16381155-16381174 Msa0632410:CDS 45.0%
! GCCCAAAGATCTTTGGAAGT+TGG + chr4_3:16381162-16381181 Msa0632410:CDS 45.0%
ACTTCTATGCCGCATGAGAT+AGG + chr4_3:16381226-16381245 Msa0632410:CDS 45.0%
AGGGGACAACTCGAGATAAA+TGG + chr4_3:16381346-16381365 Msa0632410:CDS 45.0%
TGCTTAGCTTCTGTTGGACA+TGG - chr4_3:16381388-16381407 None:intergenic 45.0%
GATCCGTGCAATGATGAAGA+TGG + chr4_3:16382079-16382098 Msa0632410:CDS 45.0%
GAGAGTTGCCCAAAGATCTT+TGG + chr4_3:16381155-16381174 Msa0632410:CDS 45.0%
! GCCCAAAGATCTTTGGAAGT+TGG + chr4_3:16381162-16381181 Msa0632410:CDS 45.0%
ACTTCTATGCCGCATGAGAT+AGG + chr4_3:16381226-16381245 Msa0632410:CDS 45.0%
AGGGGACAACTCGAGATAAA+TGG + chr4_3:16381346-16381365 Msa0632410:CDS 45.0%
TGCTTAGCTTCTGTTGGACA+TGG - chr4_3:16381388-16381407 None:intergenic 45.0%
GATCCGTGCAATGATGAAGA+TGG + chr4_3:16382079-16382098 Msa0632410:CDS 45.0%
GTAACAAGGTTGAGCTCCCA+AGG + chr4_3:16381074-16381093 Msa0632410:CDS 50.0%
!! TGGAGGCGTTTGACATGCAA+CGG - chr4_3:16381652-16381671 None:intergenic 50.0%
GCATGTCAAACGCCTCCAAA+TGG + chr4_3:16381654-16381673 Msa0632410:CDS 50.0%
GTAACAAGGTTGAGCTCCCA+AGG + chr4_3:16381074-16381093 Msa0632410:CDS 50.0%
!! TGGAGGCGTTTGACATGCAA+CGG - chr4_3:16381652-16381671 None:intergenic 50.0%
GCATGTCAAACGCCTCCAAA+TGG + chr4_3:16381654-16381673 Msa0632410:CDS 50.0%
GGAATGTGCTGAAGCCCCTC+AGG - chr4_3:16382184-16382203 None:intergenic 60.0%
GGAATGTGCTGAAGCCCCTC+AGG - chr4_3:16382184-16382203 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 16380830 16382318 16380830 ID=Msa0632410;Name=Msa0632410
chr4_3 mRNA 16380830 16382318 16380830 ID=Msa0632410-mRNA-1;Parent=Msa0632410;Name=Msa0632410-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|467
chr4_3 exon 16380830 16381718 16380830 ID=Msa0632410-mRNA-1:exon:4611;Parent=Msa0632410-mRNA-1
chr4_3 exon 16381804 16382318 16381804 ID=Msa0632410-mRNA-1:exon:4612;Parent=Msa0632410-mRNA-1
chr4_3 CDS 16380830 16381718 16380830 ID=Msa0632410-mRNA-1:cds;Parent=Msa0632410-mRNA-1
chr4_3 CDS 16381804 16382318 16381804 ID=Msa0632410-mRNA-1:cds;Parent=Msa0632410-mRNA-1
Gene Sequence

>Msa0632410

TTGGATTCTTCCTGGAAAGTTCCAACTTCTCTTCTCAATGCTCACAAATTAAGGACATTTCTATTACCAAAAGATTGGAATGGAAAAAGTTATTATACAGGTTCACTGGAAGTGTCTGTTTGTAATTCCATCCTGTCAAGTTCTAGACAAATCCGTGTGCTGAATCTTAACTACATAGGGTCAAGGAAGATTCCAGCTAGTATTGGTAGAATGAAACATCTAAGATATCTTGATCTTTCTCATTGTAACAAGGTTGAGCTCCCAAGGTCTATAACTGACTTAATTAACTTGGAGACTCTTTTACTCAATGGTTGTTCTAAATTGAGAGAGTTGCCCAAAGATCTTTGGAAGTTGGTAAGTCTTAGACATCTTGAGTTGGATGATTGTGGTGACTTAACTTCTATGCCGCATGAGATAGGAAAGATGACTAATCTTCAAACACTGACACAGTTTGTGTTAGATACGACTTCTAGAGACAAATCTAAAACAAGTGAGCTAGGAGGATTGAATAATTTGAGGGGACAACTCGAGATAAATGGCTTGGAACATCTGAGGCCATGTCCAACAGAAGCTAAGCATATGAATTTAACAGGGAAGCCACATCTTCATCGATTGACATTGAAGTGGAAACAACACACTGTTGGTGATGAAAATGAGTTTGAAAAAGATGATATAATTCTACATGACATTCTGCACTCCAATATCAAGGCATTATCAATAGATGGATTCGGTGGTGTGAAATTGTCTAGTTTGGTCAATTTAAATTTGGCTGAATTGAACTTATCCAATTGTTCAAGATTGCAATATTTTGAACTCTCACCGTTGCATGTCAAACGCCTCCAAATGGAATATTTGCCTCAACTAGAGTGCATAGTCAATGATAACAATGCGAAGAAGAAATCTCAAGGGGTTGTTGTCATCAGTTTCAGAGTCTTGAAACCTTATCGATTGGTAACTGTTATACTAGTTTCAATTCCACAACACAAACATATCAGGAAAGTACGTCTTATAAAGGTCACAGAGAAGATATTACAGCAAGCAGTCAATCATTCCAAAGTAGAGTATCTTCAGATATATTCCATACTCAATTTGAAATCTCTCAGTGGAGTCTTTCAGCATCTAAGTTCACTGTCTGAATTGCGTATCGAAAATTGCGAGGAGTTTGATCCGTGCAATGATGAAGATGGTTGTTACAGCATGAAATGGAAAGAACTGGTGAACCTCAAAGTGTTGAAGTTCTATGATATCCCAAAAATGAAATATTTACCTGAGGGGCTTCAGCACATTCCCACTTTACAAACTCTAAGAATCAGAGATTGTGAGAATCTTACCTCTATACCTGAATGGGTAAAATCACTGCAAGTATTTGATATCAAAGATTGTCCGAAGGTGAAAGATCAATAA
Protein sequence

>Msa0632410

LDSSWKVPTSLLNAHKLRTFLLPKDWNGKSYYTGSLEVSVCNSILSSSRQIRVLNLNYIGSRKIPASIGRMKHLRYLDLSHCNKVELPRSITDLINLETLLLNGCSKLRELPKDLWKLVSLRHLELDDCGDLTSMPHEIGKMTNLQTLTQFVLDTTSRDKSKTSELGGLNNLRGQLEINGLEHLRPCPTEAKHMNLTGKPHLHRLTLKWKQHTVGDENEFEKDDIILHDILHSNIKALSIDGFGGVKLSSLVNLNLAELNLSNCSRLQYFELSPLHVKRLQMEYLPQLECIVNDNNAKKKSQGVVVISFRVLKPYRLVTVILVSIPQHKHIRKVRLIKVTEKILQQAVNHSKVEYLQIYSILNLKSLSGVFQHLSSLSELRIENCEEFDPCNDEDGCYSMKWKELVNLKVLKFYDIPKMKYLPEGLQHIPTLQTLRIRDCENLTSIPEWVKSLQVFDIKDCPKVKDQ*