AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485490 MtrunA17_Chr4g0057791 87.931 174 11 1 1 174 365 528 9.36e-107 315
Msa0485490 MtrunA17_Chr8g0377071 70.303 165 39 1 1 165 530 684 1.89e-75 239
Msa0485490 MtrunA17_Chr3g0122781 62.222 180 43 2 1 165 561 730 2.17e-67 218
Msa0485490 MtrunA17_Chr4g0051261 41.250 160 74 3 1 159 149 289 5.71e-39 134
Msa0485490 MtrunA17_Chr2g0293491 40.625 160 75 3 1 159 149 289 5.90e-39 134
Msa0485490 MtrunA17_Chr1g0187371 42.138 159 73 2 1 159 171 310 3.75e-35 125
Msa0485490 MtrunA17_Chr4g0002001 41.401 157 73 3 1 157 166 303 2.12e-32 117
Msa0485490 MtrunA17_Chr3g0130781 39.326 178 92 6 1 169 174 344 5.58e-32 119
Msa0485490 MtrunA17_Chr8g0358921 40.252 159 77 2 1 159 197 337 9.08e-29 108
Msa0485490 MtrunA17_Chr6g0483151 34.146 164 87 4 1 163 157 300 4.64e-26 102
Msa0485490 MtrunA17_Chr3g0093391 38.854 157 76 4 13 169 195 331 3.96e-25 100
Msa0485490 MtrunA17_Chr3g0093571 38.217 157 77 4 13 169 197 333 1.00e-24 99.8
Msa0485490 MtrunA17_Chr3g0099951 33.133 166 86 4 1 163 159 302 2.67e-24 97.8
Msa0485490 MtrunA17_Chr5g0396361 39.241 158 75 6 13 170 298 434 1.19e-23 96.7
Msa0485490 MtrunA17_Chr7g0248461 36.875 160 83 6 13 172 196 337 1.48e-23 95.1
Msa0485490 MtrunA17_Chr8g0390341 37.748 151 78 2 13 163 285 419 2.18e-23 95.5
Msa0485490 MtrunA17_Chr2g0286421 38.854 157 75 6 13 169 260 395 2.63e-22 92.8
Msa0485490 MtrunA17_Chr4g0066691 39.597 149 72 5 13 161 262 392 1.32e-21 90.9
Msa0485490 MtrunA17_Chr6g0486031 34.437 151 83 2 13 163 272 406 1.60e-21 90.1
Msa0485490 MtrunA17_Chr3g0131861 39.869 153 66 6 13 161 255 385 1.93e-21 90.5
Msa0485490 MtrunA17_Chr4g0030231 39.583 144 71 4 13 156 198 325 2.59e-21 89.0
Msa0485490 MtrunA17_Chr4g0040141 37.500 160 73 5 13 169 287 422 3.71e-21 89.7
Msa0485490 MtrunA17_Chr6g0453711 35.152 165 70 7 13 169 268 403 4.45e-21 89.4
Msa0485490 MtrunA17_Chr8g0348481 33.333 159 86 5 13 170 195 334 8.06e-21 87.8
Msa0485490 MtrunA17_Chr7g0273601 38.217 157 76 6 13 169 265 400 1.26e-20 88.2
Msa0485490 MtrunA17_Chr2g0317501 37.267 161 72 6 13 169 292 427 1.80e-20 87.8
Msa0485490 MtrunA17_Chr4g0045841 34.483 145 78 3 13 157 213 340 3.27e-20 86.3
Msa0485490 MtrunA17_Chr5g0397261 36.667 150 69 4 13 157 199 327 4.92e-20 85.5
Msa0485490 MtrunA17_Chr8g0387401 35.172 145 78 4 13 157 210 338 5.63e-20 85.5
Msa0485490 MtrunA17_Chr4g0061141 34.591 159 79 6 13 169 263 398 4.61e-19 83.6
Msa0485490 MtrunA17_Chr8g0378831 33.333 159 79 5 5 159 186 321 6.07e-19 82.4
Msa0485490 MtrunA17_Chr7g0218071 33.333 165 74 6 13 169 278 414 7.35e-19 83.2
Msa0485490 MtrunA17_Chr1g0191221 35.625 160 76 6 13 169 280 415 9.91e-19 82.4
Msa0485490 MtrunA17_Chr8g0385971 36.025 161 74 6 13 169 248 383 2.03e-18 81.6
Msa0485490 MtrunA17_Chr3g0102571 34.694 147 79 4 13 159 239 368 3.66e-18 80.5
Msa0485490 MtrunA17_Chr8g0360761 36.232 138 56 3 21 158 80 185 3.76e-18 77.8
Msa0485490 MtrunA17_Chr4g0030151 34.014 147 81 4 13 159 197 327 4.91e-18 80.1
Msa0485490 MtrunA17_Chr3g0141871 36.129 155 81 4 13 166 191 328 2.91e-17 77.8
Msa0485490 MtrunA17_Chr2g0324461 34.545 165 71 6 13 169 299 434 3.28e-17 78.2
Msa0485490 MtrunA17_Chr8g0369451 33.113 151 76 4 12 158 155 284 7.98e-17 77.0
Msa0485490 MtrunA17_Chr8g0339221 29.697 165 99 4 7 170 150 298 2.90e-16 75.5
Msa0485490 MtrunA17_Chr8g0392811 33.784 148 79 5 12 157 278 408 8.22e-16 74.3
Msa0485490 MtrunA17_Chr5g0409421 32.450 151 77 4 12 158 155 284 9.95e-16 73.9
Msa0485490 MtrunA17_Chr4g0065851 34.694 147 77 6 13 157 187 316 9.98e-16 73.9
Msa0485490 MtrunA17_Chr1g0201571 38.000 150 73 4 13 162 284 413 1.49e-15 73.6
Msa0485490 MtrunA17_Chr1g0193081 30.263 152 76 4 14 159 234 361 6.64e-15 71.2
Msa0485490 MtrunA17_Chr1g0194201 30.263 152 76 4 14 159 234 361 4.02e-14 69.3
Msa0485490 MtrunA17_Chr8g0350311 28.947 152 78 4 14 159 298 425 8.35e-14 68.2
Msa0485490 MtrunA17_Chr2g0287271 34.459 148 78 6 13 158 187 317 9.25e-14 68.2
Msa0485490 MtrunA17_Chr2g0320011 29.452 146 85 3 14 159 247 374 1.06e-13 67.8
Msa0485490 MtrunA17_Chr4g0030241 44.737 76 32 1 13 88 59 124 1.31e-13 65.5
Msa0485490 MtrunA17_Chr7g0270371 28.947 152 78 4 14 159 234 361 2.54e-13 67.0
Msa0485490 MtrunA17_Chr6g0482681 37.162 148 74 6 13 158 251 381 3.58e-13 66.6
Msa0485490 MtrunA17_Chr7g0246591 29.605 152 77 4 14 159 300 427 5.22e-13 65.9
Msa0485490 MtrunA17_Chr2g0277011 28.571 147 87 3 13 159 248 376 7.60e-13 65.5
Msa0485490 MtrunA17_Chr5g0443351 35.616 146 77 4 13 157 184 313 9.74e-13 65.1
Msa0485490 MtrunA17_Chr4g0058241 33.553 152 84 5 15 157 280 423 1.89e-12 64.3
Msa0485490 MtrunA17_Chr8g0359091 35.374 147 78 3 13 158 188 318 8.21e-12 62.8
Msa0485490 MtrunA17_Chr8g0383451 34.667 150 78 5 13 162 156 285 8.58e-12 62.4
Msa0485490 MtrunA17_Chr3g0116701 33.333 159 89 5 15 164 276 426 1.60e-11 61.6
Msa0485490 MtrunA17_Chr3g0096631 34.899 149 78 6 12 158 186 317 2.12e-11 61.6
Msa0485490 MtrunA17_Chr3g0102601 30.435 138 79 4 22 159 86 206 8.60e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485490 AT1G67580.1 65.698 172 48 2 1 171 551 712 2.17e-72 232
Msa0485490 AT1G67580.2 65.698 172 48 2 1 171 551 712 2.17e-72 232
Msa0485490 AT5G63370.2 56.977 172 63 2 1 171 313 474 2.02e-61 197
Msa0485490 AT5G63370.3 56.977 172 63 2 1 171 313 474 2.02e-61 197
Msa0485490 AT5G63370.7 56.977 172 63 2 1 171 447 608 3.33e-60 197
Msa0485490 AT5G63370.8 56.977 172 63 2 1 171 447 608 3.33e-60 197
Msa0485490 AT5G63370.4 56.977 172 63 2 1 171 447 608 3.33e-60 197
Msa0485490 AT5G63370.6 56.977 172 63 2 1 171 447 608 3.33e-60 197
Msa0485490 AT5G63370.1 56.977 172 63 2 1 171 447 608 3.33e-60 197
Msa0485490 AT3G48750.1 42.683 164 75 3 1 163 149 294 7.24e-39 134
Msa0485490 AT1G20930.1 44.099 161 71 3 1 161 169 310 4.13e-38 133
Msa0485490 AT1G76540.1 41.615 161 75 3 1 161 167 308 3.23e-36 128
Msa0485490 AT5G63370.9 54.955 111 40 1 1 111 313 413 1.18e-34 125
Msa0485490 AT5G63370.5 54.955 111 40 1 1 111 447 547 4.65e-34 126
Msa0485490 AT5G63370.10 54.955 111 40 1 1 111 447 547 4.65e-34 126
Msa0485490 AT3G54180.1 42.405 158 70 3 1 157 164 301 1.11e-33 121
Msa0485490 AT2G38620.4 42.405 158 70 3 1 157 104 241 1.14e-33 119
Msa0485490 AT2G38620.2 42.405 158 70 3 1 157 166 303 3.30e-33 120
Msa0485490 AT1G18040.1 37.805 164 81 4 1 163 155 298 4.36e-32 119
Msa0485490 AT1G73690.1 37.805 164 81 4 1 163 154 297 3.53e-31 116
Msa0485490 AT5G63610.1 38.922 167 92 4 1 163 179 339 1.10e-30 116
Msa0485490 AT5G10270.1 42.675 157 70 4 13 169 198 334 3.92e-28 109
Msa0485490 AT5G64960.2 38.509 161 71 4 13 169 145 281 7.91e-27 105
Msa0485490 AT5G64960.1 38.509 161 71 4 13 169 198 334 1.43e-26 105
Msa0485490 AT1G66750.1 34.356 163 88 3 1 163 156 299 1.52e-26 103
Msa0485490 AT1G71530.2 37.576 165 71 3 11 168 303 442 5.91e-24 97.4
Msa0485490 AT1G71530.1 37.576 165 71 3 11 168 303 442 1.29e-23 97.1
Msa0485490 AT3G59790.1 37.241 145 74 4 13 157 218 345 2.44e-23 95.1
Msa0485490 AT3G01085.1 33.537 164 79 5 11 169 271 409 5.08e-23 95.5
Msa0485490 AT3G01085.2 33.537 164 79 5 11 169 271 409 5.08e-23 95.5
Msa0485490 AT3G01085.3 33.537 164 79 5 11 169 271 409 5.66e-23 95.1
Msa0485490 AT4G11330.1 39.007 141 68 4 13 152 201 324 2.61e-22 92.4
Msa0485490 AT1G01560.2 36.076 158 83 5 13 170 198 337 5.23e-22 91.3
Msa0485490 AT1G74330.3 36.095 169 87 5 1 169 269 416 1.05e-21 91.7
Msa0485490 AT4G01370.1 36.709 158 82 5 13 170 201 340 1.08e-21 90.5
Msa0485490 AT1G74330.1 36.095 169 87 5 1 169 269 416 1.12e-21 91.7
Msa0485490 AT1G74330.2 36.095 169 87 5 1 169 269 416 1.27e-21 91.3
Msa0485490 AT5G44290.6 39.490 157 74 5 13 169 295 430 1.82e-21 90.9
Msa0485490 AT5G44290.7 39.490 157 74 5 13 169 295 430 1.89e-21 90.9
Msa0485490 AT1G03740.2 38.272 162 69 7 13 169 371 506 2.12e-21 90.9
Msa0485490 AT1G03740.1 38.272 162 69 7 13 169 371 506 2.36e-21 90.5
Msa0485490 AT5G44290.2 39.490 157 74 5 13 169 295 430 2.78e-21 90.5
Msa0485490 AT5G44290.5 39.490 157 74 5 13 169 295 430 2.78e-21 90.5
Msa0485490 AT5G44290.4 39.490 157 74 5 13 169 295 430 2.78e-21 90.5
Msa0485490 AT5G44290.1 39.490 157 74 5 13 169 295 430 2.78e-21 90.5
Msa0485490 AT5G44290.3 39.490 157 74 5 13 169 295 430 2.78e-21 90.5
Msa0485490 AT1G53050.2 37.580 157 77 6 13 169 292 427 4.44e-21 89.7
Msa0485490 AT1G53050.1 37.580 157 77 6 13 169 292 427 4.44e-21 89.7
Msa0485490 AT5G50860.2 35.625 160 76 6 13 169 272 407 9.03e-21 88.6
Msa0485490 AT5G50860.1 35.625 160 76 6 13 169 272 407 1.24e-20 88.6
Msa0485490 AT1G71530.3 37.500 152 63 3 11 155 303 429 1.26e-20 88.2
Msa0485490 AT2G46070.1 35.172 145 78 4 13 157 199 327 2.64e-20 86.7
Msa0485490 AT2G46070.3 35.172 145 78 4 13 157 233 361 3.37e-20 86.7
Msa0485490 AT1G01560.3 36.957 138 71 4 13 150 198 319 4.79e-20 85.9
Msa0485490 AT5G39420.1 33.333 159 85 5 11 169 261 398 7.50e-20 86.3
Msa0485490 AT4G28980.3 34.437 151 83 2 13 163 290 424 8.06e-20 85.9
Msa0485490 AT4G28980.1 34.437 151 83 2 13 163 290 424 8.06e-20 85.9
Msa0485490 AT4G28980.2 34.437 151 83 2 13 163 290 424 8.06e-20 85.9
Msa0485490 AT1G09600.1 36.601 153 73 5 13 162 321 452 8.77e-20 86.3
Msa0485490 AT4G13020.1 34.177 158 84 5 1 157 145 283 1.20e-19 85.5
Msa0485490 AT4G13020.4 34.177 158 84 5 1 157 145 283 1.43e-19 85.1
Msa0485490 AT4G13020.2 34.177 158 84 5 1 157 153 291 1.45e-19 85.1
Msa0485490 AT4G13020.3 34.177 158 84 5 1 157 153 291 1.45e-19 85.1
Msa0485490 AT4G13020.6 34.177 158 84 5 1 157 145 283 1.45e-19 84.7
Msa0485490 AT4G13020.5 34.177 158 84 5 1 157 154 292 1.48e-19 85.1
Msa0485490 AT1G54610.1 33.544 158 84 3 13 170 276 412 1.65e-19 85.1
Msa0485490 AT1G54610.3 33.544 158 84 3 13 170 276 412 1.65e-19 85.1
Msa0485490 AT1G54610.2 33.544 158 84 3 13 170 276 412 1.65e-19 85.1
Msa0485490 AT4G13020.8 34.177 158 84 5 1 157 154 292 1.80e-19 84.3
Msa0485490 AT4G13020.7 34.177 158 84 5 1 157 145 283 1.90e-19 84.3
Msa0485490 AT1G18670.2 34.545 165 73 6 13 169 290 427 2.07e-19 85.1
Msa0485490 AT4G10010.1 35.897 156 79 5 13 168 134 268 2.09e-19 84.7
Msa0485490 AT1G18670.3 34.545 165 73 6 13 169 290 427 2.13e-19 85.1
Msa0485490 AT1G18670.1 34.545 165 73 6 13 169 290 427 2.21e-19 85.1
Msa0485490 AT4G10010.2 35.897 156 79 5 13 168 314 448 3.25e-19 84.3
Msa0485490 AT3G45640.1 32.716 162 91 6 13 172 196 341 1.38e-18 82.0
Msa0485490 AT1G07880.2 35.172 145 78 3 13 157 191 319 1.55e-18 81.6
Msa0485490 AT1G10210.2 36.076 158 81 6 13 169 191 329 6.22e-18 80.1
Msa0485490 AT1G10210.3 36.076 158 81 6 13 169 191 329 6.22e-18 80.1
Msa0485490 AT1G10210.1 36.076 158 81 6 13 169 191 329 6.22e-18 80.1
Msa0485490 AT4G22940.1 34.568 162 75 6 13 169 262 397 6.39e-18 80.5
Msa0485490 AT4G36450.1 34.911 169 89 7 1 169 179 326 6.83e-18 80.1
Msa0485490 AT4G22940.2 34.568 162 75 6 13 169 262 397 7.08e-18 80.5
Msa0485490 AT2G46070.2 35.556 135 71 4 13 147 199 317 7.30e-18 79.7
Msa0485490 AT2G38620.3 58.182 55 23 0 1 55 166 220 1.65e-17 77.8
Msa0485490 AT2G38620.1 58.182 55 23 0 1 55 166 220 1.65e-17 77.8
Msa0485490 AT4G19110.3 33.784 148 79 6 12 158 99 228 2.52e-17 78.6
Msa0485490 AT1G59580.2 35.758 165 72 6 13 169 191 329 4.19e-17 77.8
Msa0485490 AT1G59580.1 35.758 165 72 6 13 169 191 329 4.19e-17 77.8
Msa0485490 AT4G19110.1 33.557 149 78 6 12 158 155 284 4.56e-17 78.2
Msa0485490 AT4G19110.2 33.557 149 78 6 12 158 155 284 5.25e-17 77.8
Msa0485490 AT5G45430.1 32.468 154 73 6 12 158 155 284 1.49e-16 76.6
Msa0485490 AT5G45430.2 32.468 154 73 6 12 158 155 284 1.50e-16 76.6
Msa0485490 AT1G33770.1 37.086 151 77 5 13 163 299 431 2.36e-16 76.3
Msa0485490 AT2G18170.1 35.135 148 74 6 13 157 191 319 2.57e-16 75.5
Msa0485490 AT2G43790.1 32.877 146 79 3 13 157 221 348 3.75e-16 75.1
Msa0485490 AT2G01450.3 36.054 147 77 5 13 158 178 308 3.98e-16 75.5
Msa0485490 AT2G01450.1 36.054 147 77 5 13 158 178 308 3.98e-16 75.5
Msa0485490 AT2G01450.2 36.054 147 77 5 13 158 178 308 3.98e-16 75.5
Msa0485490 AT2G01450.4 36.054 147 77 5 13 158 178 308 3.98e-16 75.5
Msa0485490 AT1G73670.1 37.162 148 74 6 12 157 251 381 8.82e-16 74.3
Msa0485490 AT3G61160.4 30.675 163 73 4 14 165 261 394 2.29e-15 73.2
Msa0485490 AT1G57700.1 36.364 154 74 5 13 163 304 436 2.99e-15 73.2
Msa0485490 AT3G61160.1 30.675 163 73 4 14 165 261 394 3.10e-15 72.8
Msa0485490 AT3G61160.2 30.675 163 73 4 14 165 268 401 3.16e-15 72.8
Msa0485490 AT1G71530.4 57.895 57 23 1 11 66 303 359 3.32e-14 69.7
Msa0485490 AT4G00720.1 30.263 152 76 4 14 159 297 424 4.60e-14 69.3
Msa0485490 AT5G19010.1 34.459 148 78 6 13 158 187 317 5.94e-14 69.3
Msa0485490 AT3G05840.2 29.605 152 77 4 14 159 232 359 1.10e-13 68.2
Msa0485490 AT3G05840.1 29.605 152 77 4 14 159 232 359 1.10e-13 68.2
Msa0485490 AT2G30980.1 28.767 146 86 3 14 159 231 358 2.45e-13 67.4
Msa0485490 AT5G26751.1 29.605 152 77 4 14 159 228 355 2.59e-13 67.4
Msa0485490 AT1G09840.11 29.252 147 86 3 13 159 114 242 3.15e-13 66.6
Msa0485490 AT5G14640.1 28.947 152 78 4 14 159 233 360 3.29e-13 67.0
Msa0485490 AT5G14640.2 28.947 152 78 4 14 159 233 360 3.29e-13 67.0
Msa0485490 AT1G57870.1 29.452 146 85 3 14 159 241 368 3.61e-13 67.0
Msa0485490 AT1G57870.4 29.452 146 85 3 14 159 241 368 3.61e-13 67.0
Msa0485490 AT1G57870.2 29.452 146 85 3 14 159 241 368 3.61e-13 67.0
Msa0485490 AT1G06390.2 28.767 146 86 3 14 159 229 356 3.64e-13 66.6
Msa0485490 AT1G06390.1 28.767 146 86 3 14 159 229 356 3.64e-13 66.6
Msa0485490 AT1G57870.3 29.452 146 85 3 14 159 241 368 3.81e-13 66.6
Msa0485490 AT3G61160.5 30.822 146 61 4 14 148 261 377 4.00e-13 66.6
Msa0485490 AT1G01560.4 60.465 43 17 0 13 55 198 240 6.42e-13 65.5
Msa0485490 AT1G01560.1 60.465 43 17 0 13 55 198 240 6.42e-13 65.5
Msa0485490 AT5G67380.1 29.747 158 94 5 4 157 251 395 1.16e-12 65.5
Msa0485490 AT5G67380.2 29.747 158 94 5 4 157 218 362 1.24e-12 65.1
Msa0485490 AT3G05050.3 34.021 97 53 2 6 102 289 374 1.36e-12 65.5
Msa0485490 AT3G05050.2 34.021 97 53 2 6 102 289 374 1.36e-12 65.5
Msa0485490 AT3G05050.1 34.021 97 53 2 6 102 289 374 1.36e-12 65.5
Msa0485490 AT1G09840.3 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.7 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.10 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.6 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.4 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.1 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.9 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.5 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.8 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G09840.2 29.252 147 86 3 13 159 241 369 1.85e-12 64.7
Msa0485490 AT1G18150.3 37.162 148 74 6 12 157 265 395 1.92e-12 64.7
Msa0485490 AT1G18150.2 37.162 148 74 6 12 157 265 395 1.92e-12 64.7
Msa0485490 AT1G18150.1 37.162 148 74 6 12 157 265 395 1.92e-12 64.7
Msa0485490 AT3G61160.3 41.667 72 32 1 14 85 261 322 2.17e-12 64.3
Msa0485490 AT3G61160.6 41.667 72 32 1 14 85 268 329 2.19e-12 64.3
Msa0485490 AT2G42880.1 35.570 149 77 6 12 158 186 317 3.40e-12 64.3
Msa0485490 AT1G07880.1 58.140 43 18 0 13 55 191 233 3.43e-11 60.5
Msa0485490 AT3G18040.2 35.374 147 76 5 13 157 97 226 3.48e-11 61.2
Msa0485490 AT2G42880.2 35.374 147 78 5 13 158 187 317 4.54e-11 60.8
Msa0485490 AT3G18040.5 35.374 147 76 5 13 157 180 309 6.12e-11 60.5
Msa0485490 AT3G18040.1 35.374 147 76 5 13 157 185 314 6.43e-11 60.5

Find 160 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTCTCAAAGCTGAAAT+TGG 0.165019 3_4:-3187786 None:intergenic
AATTAACTGGTGATTGAAAA+TGG 0.213607 3_4:+3189626 Msa0485490:three_prime_UTR
TATGGTATGTTCTTATTCTA+TGG 0.222180 3_4:+3189321 Msa0485490:three_prime_UTR
CGCATCTTTCACTGGTTTGC+CGG 0.223816 3_4:+3188747 Msa0485490:CDS
GATTACTATAAGATTGATTC+TGG 0.244127 3_4:+3187100 Msa0485490:five_prime_UTR
GTATGACCTTAAGCAGTTAT+TGG 0.280165 3_4:+3187917 Msa0485490:five_prime_UTR
GTAAGGAAGCCCACAATTAA+AGG 0.290008 3_4:-3189758 None:intergenic
TCACCTATTTCCGTTTCAAC+TGG 0.293964 3_4:+3189953 Msa0485490:intron
TCTGATTGAGCCTTCCAATT+GGG 0.302931 3_4:+3189364 Msa0485490:three_prime_UTR
TGACTTTGTGACACCATCTT+TGG 0.303330 3_4:-3187235 None:intergenic
TCAAATATCTCCATGATAAC+TGG 0.325806 3_4:+3188006 Msa0485490:five_prime_UTR
GGCTCAATCAGAAAGAAAAT+TGG 0.334103 3_4:-3189353 None:intergenic
GAATCGTTGATAGCTGTTCT+TGG 0.335507 3_4:+3189474 Msa0485490:three_prime_UTR
ATATATTCTTACATATTTGA+TGG 0.336658 3_4:+3189840 Msa0485490:three_prime_UTR
AAGATAAATGAAGGAACTTA+TGG 0.359123 3_4:+3187678 Msa0485490:five_prime_UTR
TTCTGATTGAGCCTTCCAAT+TGG 0.364680 3_4:+3189363 Msa0485490:three_prime_UTR
TAATATATCATTATATTTCC+AGG 0.367849 3_4:-3189585 None:intergenic
ATAGTAATCAAATTCCTTAA+CGG 0.374801 3_4:-3187086 None:intergenic
GAAAATTCTCTCCTATTGTA+TGG 0.374901 3_4:+3187193 Msa0485490:five_prime_UTR
TGTGCCTTTCCTTTAATTGT+GGG 0.381279 3_4:+3189749 Msa0485490:three_prime_UTR
AATGCCACGCCAAGCTTAGT+AGG 0.381481 3_4:-3189716 None:intergenic
CTTCTCTTGTGGTTACACTA+TGG 0.381632 3_4:+3188140 Msa0485490:CDS
AAAGTCGCAGCCTTTCAGTA+TGG 0.383679 3_4:+3187944 Msa0485490:five_prime_UTR
AACATTCTGTTGAATAAAGA+TGG 0.386547 3_4:+3188055 Msa0485490:five_prime_UTR
AACAATAGAGGGATGGTCTA+AGG 0.387197 3_4:-3187823 None:intergenic
CTTAAAACACCATCACCTTC+AGG 0.393316 3_4:-3187276 None:intergenic
TCATCTGCACCATGGTTAAC+AGG 0.395971 3_4:+3189529 Msa0485490:three_prime_UTR
TTAGCGCCCAACAAAAGTTC+AGG 0.400668 3_4:-3188259 None:intergenic
CAGAAAGTAGCCACGAAACT+TGG 0.403685 3_4:-3189392 None:intergenic
AGTATCCACGTTAGAACCTT+GGG 0.409654 3_4:+3190029 Msa0485490:three_prime_UTR
CTCTCCTATTGTATGGGATC+TGG 0.410360 3_4:+3187200 Msa0485490:five_prime_UTR
TTCATGAAGCAACTTCTTGA+AGG 0.411398 3_4:+3187981 Msa0485490:five_prime_UTR
TTGTGCCTTTCCTTTAATTG+TGG 0.420465 3_4:+3189748 Msa0485490:three_prime_UTR
TTGACTCCAATAACTGCTTA+AGG 0.422097 3_4:-3187923 None:intergenic
TTCTTTAACATCAACAATAG+AGG 0.424526 3_4:-3187835 None:intergenic
TACCCCGCATAGAGGGTACT+TGG 0.425991 3_4:-3189254 None:intergenic
AAGCTGCTCTGCGTCATGAT+TGG 0.428822 3_4:+3188933 Msa0485490:CDS
CTGATTGAGCCTTCCAATTG+GGG 0.433111 3_4:+3189365 Msa0485490:three_prime_UTR
TGCCCTTGAAAGTGGCTCCT+TGG 0.436618 3_4:-3188341 None:intergenic
TTTGGAATGTCAAGGCAGTA+TGG 0.439108 3_4:+3188097 Msa0485490:exon
TTGCGATGATGGTACTTATA+TGG 0.439453 3_4:+3187878 Msa0485490:five_prime_UTR
TCCGATGCTTATGAAAATAG+TGG 0.442284 3_4:+3187582 Msa0485490:five_prime_UTR
TTACAAACATGGTTCCGTTA+AGG 0.447171 3_4:+3187072 Msa0485490:five_prime_UTR
CCAGGATTATCCAAGTTGCC+TGG 0.451070 3_4:+3188565 Msa0485490:CDS
TTAGCCAGATCCCATACAAT+AGG 0.452334 3_4:-3187204 None:intergenic
GAGTGTTCAAGAGCATTTCC+TGG 0.454070 3_4:-3189430 None:intergenic
GGAAAAGAGGATAGAGAAGA+AGG 0.461879 3_4:+3187121 Msa0485490:five_prime_UTR
GGAAATGCTCTTGAACACTC+TGG 0.471617 3_4:+3189433 Msa0485490:three_prime_UTR
TGCTTTAGACCCAGGCAACT+TGG 0.472026 3_4:-3188575 None:intergenic
GTGGTCTCTCGGCTGTATAA+TGG 0.480292 3_4:+3188306 Msa0485490:CDS
GGTGAAGATGGACATGGAGA+GGG 0.484702 3_4:+3187755 Msa0485490:five_prime_UTR
GATGATAATGATTGCGATGA+TGG 0.484887 3_4:+3187867 Msa0485490:five_prime_UTR
TGATGGTACTTATATGGTAA+TGG 0.485973 3_4:+3187884 Msa0485490:five_prime_UTR
TTTCTTCTCTTCTCCAGAAG+TGG 0.487204 3_4:-3187174 None:intergenic
CACCTATTTCCGTTTCAACT+GGG 0.489762 3_4:+3189954 Msa0485490:intron
TAAGATTGATTCTGGAAAAG+AGG 0.490965 3_4:+3187108 Msa0485490:five_prime_UTR
TTCAAGAAGTTGCTTCATGA+AGG 0.491847 3_4:-3187979 None:intergenic
TTCCAAGGAGCCACTTTCAA+GGG 0.492351 3_4:+3188339 Msa0485490:CDS
TATTTATCATCATCAGCCAT+TGG 0.492583 3_4:-3187459 None:intergenic
CGTGGAGAATCCAGTTATCA+TGG 0.493075 3_4:-3188016 None:intergenic
GGATGAAGAAAGTGATATGC+AGG 0.495331 3_4:+3187326 Msa0485490:five_prime_UTR
CAGGATTATCCAAGTTGCCT+GGG 0.499457 3_4:+3188566 Msa0485490:CDS
AGAAGGTGAGATCTTGTTGA+TGG 0.499686 3_4:+3187138 Msa0485490:five_prime_UTR
TTTCCAGCCGCATCTTTCAC+TGG 0.504356 3_4:+3188739 Msa0485490:CDS
TAGGATAAACCCAGTTGAAA+CGG 0.504382 3_4:-3189963 None:intergenic
TTTCCAAGGAGCCACTTTCA+AGG 0.507936 3_4:+3188338 Msa0485490:CDS
GCTAAGAACTCTTCCAAAGA+TGG 0.509231 3_4:+3187222 Msa0485490:five_prime_UTR
AAGTTGAAAATATGCGACTT+TGG 0.512959 3_4:+3188079 Msa0485490:five_prime_UTR
GCAGATGATGTTTCTCTACA+TGG 0.513143 3_4:-3189514 None:intergenic
ACAAAATTTGCTTTAGACCC+AGG 0.515280 3_4:-3188583 None:intergenic
GCAATTGATATGTGGTCTCT+CGG 0.515622 3_4:+3188295 Msa0485490:CDS
ATGATTAAGAAGATAAATGA+AGG 0.515867 3_4:+3187669 Msa0485490:five_prime_UTR
AGAAGCTCAAGTGCAGAAGT+TGG 0.515950 3_4:+3187495 Msa0485490:five_prime_UTR
AATGGCTGAATTAATTTCCA+AGG 0.518996 3_4:+3188324 Msa0485490:CDS
AAAGCTAAGGACAAGAAGAC+TGG 0.521089 3_4:+3187711 Msa0485490:five_prime_UTR
TCTAGCTTATGATCCTGAAA+AGG 0.523796 3_4:+3188807 Msa0485490:CDS
TTCTGATGAACTTTCACCAA+TGG 0.526486 3_4:+3187443 Msa0485490:five_prime_UTR
AAATACATATAAGAAAAGTA+AGG 0.526974 3_4:-3189775 None:intergenic
AGACCACATATCAATTGCCT+TGG 0.527683 3_4:-3188290 None:intergenic
TTGCAATCAGATCTCGGAAG+TGG 0.528608 3_4:-3188968 None:intergenic
AGGTGAAGATGGACATGGAG+AGG 0.532841 3_4:+3187754 Msa0485490:five_prime_UTR
AGCATTGAAGAAGGTGAAGA+TGG 0.533853 3_4:+3187743 Msa0485490:five_prime_UTR
ACTCATTTATTATATAGTCA+TGG 0.534624 3_4:-3189292 None:intergenic
TCCTTCGATTTCTTCATCGC+CGG 0.534626 3_4:+3186700 Msa0485490:five_prime_UTR
GTTCCAAGTACCCTCTATGC+GGG 0.537448 3_4:+3189251 Msa0485490:three_prime_UTR
TTCGAAGAATTCGTCTTGTG+TGG 0.537785 3_4:+3187305 Msa0485490:five_prime_UTR
CCAGGCAACTTGGATAATCC+TGG 0.537947 3_4:-3188565 None:intergenic
AAGTATCCACGTTAGAACCT+TGG 0.538031 3_4:+3190028 Msa0485490:three_prime_UTR
AAGTCGCAGCCTTTCAGTAT+GGG 0.541229 3_4:+3187945 Msa0485490:five_prime_UTR
ACTGGATTGCAATCAGATCT+CGG 0.542876 3_4:-3188974 None:intergenic
AAAATTCTCTCCTATTGTAT+GGG 0.543490 3_4:+3187194 Msa0485490:five_prime_UTR
GCAATGCTCCCTACTAAGCT+TGG 0.544563 3_4:+3189707 Msa0485490:three_prime_UTR
TGATGATGATCTTTCACCGA+TGG 0.548912 3_4:+3187380 Msa0485490:five_prime_UTR
ATGATAACTGGATTCTCCAC+GGG 0.550012 3_4:+3188018 Msa0485490:five_prime_UTR
AGAGAAGTATATTGCTTCAG+AGG 0.551431 3_4:-3188124 None:intergenic
TTGTGGTTACACTATGGTAC+AGG 0.554623 3_4:+3188146 Msa0485490:CDS
TACAGTGAACTGAGAAGGTA+CGG 0.556055 3_4:+3189205 Msa0485490:three_prime_UTR
TCTTTAACATCAACAATAGA+GGG 0.557330 3_4:-3187834 None:intergenic
AATCCCGACTCCGATAAAAC+CGG 0.558411 3_4:-3188766 None:intergenic
CCAGATGAGAAAACATGGCC+AGG 0.560135 3_4:+3188547 Msa0485490:CDS
AGAAATTGTAGCATTGAAGA+AGG 0.560660 3_4:+3187734 Msa0485490:five_prime_UTR
TGAATGGTATGAAGAAATGT+TGG 0.563048 3_4:+3189665 Msa0485490:three_prime_UTR
GAGAAGTATATTGCTTCAGA+GGG 0.563382 3_4:-3188123 None:intergenic
GAAATGCTCTTGAACACTCT+GGG 0.563563 3_4:+3189434 Msa0485490:three_prime_UTR
ATTGGTATGATTTCTCAACT+AGG 0.564309 3_4:-3190067 None:intergenic
GTGATTGAAAATGGATTACA+AGG 0.565628 3_4:+3189635 Msa0485490:three_prime_UTR
AACACAGTGATCGACTTCAT+AGG 0.570506 3_4:+3189147 Msa0485490:intron
TGGTGTTGTCTATAAAGCTA+AGG 0.571789 3_4:+3187698 Msa0485490:five_prime_UTR
GAAGCAATATACTTCTCTTG+TGG 0.576987 3_4:+3188129 Msa0485490:CDS
ATTACAAGGAATCAGTTGAA+TGG 0.577091 3_4:+3189649 Msa0485490:three_prime_UTR
CGTCATGATTGGTTTCGTGA+AGG 0.579445 3_4:+3188944 Msa0485490:CDS
TGATTGAGCCTTCCAATTGG+GGG 0.581158 3_4:+3189366 Msa0485490:three_prime_UTR
ATGCCACGCCAAGCTTAGTA+GGG 0.581284 3_4:-3189715 None:intergenic
ACTCCAAGGCAATTGATATG+TGG 0.582844 3_4:+3188287 Msa0485490:CDS
AGCTCAAGTGCAGAAGTTGG+TGG 0.585947 3_4:+3187498 Msa0485490:five_prime_UTR
GATTCTTACAATTACAAACA+TGG 0.586159 3_4:+3187061 Msa0485490:five_prime_UTR
ATGATTTCTCAACTAGGTGG+AGG 0.589157 3_4:-3190061 None:intergenic
TTTATCTCACCCATACTGAA+AGG 0.589770 3_4:-3187954 None:intergenic
AAACCAGTGAAAGATGCGGC+TGG 0.590629 3_4:-3188742 None:intergenic
ACATTCTGTTGAATAAAGAT+GGG 0.593850 3_4:+3188056 Msa0485490:five_prime_UTR
TATTTACAATCATCAGCCAT+CGG 0.595389 3_4:-3187396 None:intergenic
ATAGAATAAGAACATACCAT+AGG 0.599341 3_4:-3189319 None:intergenic
GAAGCCCACAATTAAAGGAA+AGG 0.605851 3_4:-3189753 None:intergenic
CGATGTACAGTGAACTGAGA+AGG 0.607892 3_4:+3189200 Msa0485490:three_prime_UTR
CATGATAACTGGATTCTCCA+CGG 0.608906 3_4:+3188017 Msa0485490:five_prime_UTR
CTTGAACACTCTGGGCACAA+TGG 0.610528 3_4:+3189442 Msa0485490:three_prime_UTR
ACAAGCTCACAAAGTCGAAG+TGG 0.614302 3_4:+3187418 Msa0485490:five_prime_UTR
GGAACATAACGAAGTCGAAG+TGG 0.619384 3_4:+3187352 Msa0485490:five_prime_UTR
GTAGTGGTAGTTGCTCAGAC+AGG 0.625025 3_4:+3189009 Msa0485490:exon
ATGTTGGAACGGTTGCAAGA+AGG 0.630629 3_4:+3189681 Msa0485490:three_prime_UTR
CAAGCTCACAAAGTCGAAGT+GGG 0.631582 3_4:+3187419 Msa0485490:five_prime_UTR
TTAGATGTCTTCAAATCCCG+TGG 0.631636 3_4:-3188034 None:intergenic
TATGCGACTTTGGAATGTCA+AGG 0.633974 3_4:+3188089 Msa0485490:exon
TAACATCAACAATAGAGGGA+TGG 0.639378 3_4:-3187830 None:intergenic
AAGATGGACATGGAGAGGGA+AGG 0.639513 3_4:+3187759 Msa0485490:five_prime_UTR
ATTGAAGGTGTAGTATGCTA+AGG 0.640214 3_4:+3188710 Msa0485490:intron
AAGAAAGTGATATGCAGGGG+TGG 0.647243 3_4:+3187331 Msa0485490:five_prime_UTR
CGTTCCAAGTACCCTCTATG+CGG 0.648901 3_4:+3189250 Msa0485490:three_prime_UTR
GAACATAACGAAGTCGAAGT+GGG 0.650795 3_4:+3187353 Msa0485490:five_prime_UTR
TGGAACGGTTGCAAGAAGGA+TGG 0.652149 3_4:+3189685 Msa0485490:three_prime_UTR
GCTCCCTACTAAGCTTGGCG+TGG 0.654597 3_4:+3189712 Msa0485490:three_prime_UTR
TGATGTTAAAGAAGTAGTCG+TGG 0.657353 3_4:+3187845 Msa0485490:five_prime_UTR
TGAAGTTGAACAACTTGACA+AGG 0.657583 3_4:+3188368 Msa0485490:CDS
GTGGATGAACAAAGTCCTGA+AGG 0.663618 3_4:+3187261 Msa0485490:five_prime_UTR
TATCCACGTTAGAACCTTGG+GGG 0.663657 3_4:+3190031 Msa0485490:three_prime_UTR
GTACACCAGATGAGAAAACA+TGG 0.666035 3_4:+3188542 Msa0485490:CDS
ACCGGCGATGAAGAAATCGA+AGG 0.666811 3_4:-3186701 None:intergenic
GAACAAAGTCCTGAAGGTGA+TGG 0.667925 3_4:+3187267 Msa0485490:five_prime_UTR
GTATCCACGTTAGAACCTTG+GGG 0.670428 3_4:+3190030 Msa0485490:three_prime_UTR
TGGTGTCACAAAGTCATCTG+TGG 0.671863 3_4:+3187242 Msa0485490:five_prime_UTR
GGTATGATTTCTCAACTAGG+TGG 0.675336 3_4:-3190064 None:intergenic
CGGCAAACCAGTGAAAGATG+CGG 0.675862 3_4:-3188746 None:intergenic
ACATCATGACCTGTTAACCA+TGG 0.677276 3_4:-3189538 None:intergenic
GAAGAAGGTGAAGATGGACA+TGG 0.681215 3_4:+3187749 Msa0485490:five_prime_UTR
GAGAAACATCATCTGCACCA+TGG 0.685989 3_4:+3189521 Msa0485490:three_prime_UTR
GGTATGAAGAAATGTTGGAA+CGG 0.692171 3_4:+3189670 Msa0485490:three_prime_UTR
GATGAAGAAAGTGATATGCA+GGG 0.693650 3_4:+3187327 Msa0485490:five_prime_UTR
TTCCAAGTACCCTCTATGCG+GGG 0.694441 3_4:+3189252 Msa0485490:three_prime_UTR
AAATAGTGGAATGATGCATG+TGG 0.700515 3_4:+3187596 Msa0485490:five_prime_UTR
ATGAAGAAAGTGATATGCAG+GGG 0.747653 3_4:+3187328 Msa0485490:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATATAATTTTGATTTA+TGG + chr3_4:3188181-3188200 Msa0485490:intron 10.0%
!! TAATATATCATTATATTTCC+AGG - chr3_4:3189588-3189607 None:intergenic 15.0%
!! GAAAAAATTGTTAAATTAAC+TGG + chr3_4:3189613-3189632 Msa0485490:three_prime_UTR 15.0%
!! AAATACATATAAGAAAAGTA+AGG - chr3_4:3189778-3189797 None:intergenic 15.0%
!! ATATATTCTTACATATTTGA+TGG + chr3_4:3189840-3189859 Msa0485490:three_prime_UTR 15.0%
!!! ATGATGAATAGTTTTCAATT+GGG - chr3_4:3186810-3186829 None:intergenic 20.0%
!!! AATGATGAATAGTTTTCAAT+TGG - chr3_4:3186811-3186830 None:intergenic 20.0%
!! ATAGTAATCAAATTCCTTAA+CGG - chr3_4:3187089-3187108 None:intergenic 20.0%
!! ATGATTAAGAAGATAAATGA+AGG + chr3_4:3187669-3187688 Msa0485490:five_prime_UTR 20.0%
!!! AATAAATAACATACCTTTTC+AGG - chr3_4:3188823-3188842 None:intergenic 20.0%
!!! ATTATGTAATGATATTTTGC+TGG + chr3_4:3188840-3188859 Msa0485490:intron 20.0%
!! TTAGTATATGATCATTAATG+TGG - chr3_4:3189110-3189129 None:intergenic 20.0%
!!! TAGGTCTTTTTGTTATAAAT+TGG + chr3_4:3189166-3189185 Msa0485490:three_prime_UTR 20.0%
!!! TTTTTGTTATAAATTGGAAG+TGG + chr3_4:3189172-3189191 Msa0485490:three_prime_UTR 20.0%
!! ACTCATTTATTATATAGTCA+TGG - chr3_4:3189295-3189314 None:intergenic 20.0%
!!! TAATAAATGAGTTTTTCCTA+TGG + chr3_4:3189303-3189322 Msa0485490:three_prime_UTR 20.0%
!!! TTTATCCTATTTTTCTGATT+AGG + chr3_4:3189977-3189996 Msa0485490:three_prime_UTR 20.0%
!!! TACTTCAATTTTTTCAGATT+AGG - chr3_4:3190013-3190032 None:intergenic 20.0%
! ACATTAGGGTTTGAAAATTT+GGG + chr3_4:3186939-3186958 Msa0485490:intron 25.0%
!! TTTGAAAATTTGGGGATTTT+AGG + chr3_4:3186948-3186967 Msa0485490:intron 25.0%
!! TTGAAAATTTGGGGATTTTA+GGG + chr3_4:3186949-3186968 Msa0485490:intron 25.0%
! GATTCTTACAATTACAAACA+TGG + chr3_4:3187061-3187080 Msa0485490:five_prime_UTR 25.0%
!! GATTACTATAAGATTGATTC+TGG + chr3_4:3187100-3187119 Msa0485490:five_prime_UTR 25.0%
! AAAATTCTCTCCTATTGTAT+GGG + chr3_4:3187194-3187213 Msa0485490:five_prime_UTR 25.0%
! AAGATAAATGAAGGAACTTA+TGG + chr3_4:3187678-3187697 Msa0485490:five_prime_UTR 25.0%
! TCTTTAACATCAACAATAGA+GGG - chr3_4:3187837-3187856 None:intergenic 25.0%
! TTCTTTAACATCAACAATAG+AGG - chr3_4:3187838-3187857 None:intergenic 25.0%
! AACATTCTGTTGAATAAAGA+TGG + chr3_4:3188055-3188074 Msa0485490:five_prime_UTR 25.0%
! ACATTCTGTTGAATAAAGAT+GGG + chr3_4:3188056-3188075 Msa0485490:five_prime_UTR 25.0%
!! AAGCAAATTTTGTTAAGCAA+CGG + chr3_4:3188593-3188612 Msa0485490:CDS 25.0%
!!! GATGTTTATATTTTTTGCAG+AGG + chr3_4:3188900-3188919 Msa0485490:intron 25.0%
! GTTGATACAAAAAAAATCAG+GGG - chr3_4:3189231-3189250 None:intergenic 25.0%
! CGTTGATACAAAAAAAATCA+GGG - chr3_4:3189232-3189251 None:intergenic 25.0%
! ACGTTGATACAAAAAAAATC+AGG - chr3_4:3189233-3189252 None:intergenic 25.0%
! ATAGAATAAGAACATACCAT+AGG - chr3_4:3189322-3189341 None:intergenic 25.0%
! TATGGTATGTTCTTATTCTA+TGG + chr3_4:3189321-3189340 Msa0485490:three_prime_UTR 25.0%
!!! TTGAATTTTATAGTTTTGCC+TGG + chr3_4:3189567-3189586 Msa0485490:three_prime_UTR 25.0%
! AATTAACTGGTGATTGAAAA+TGG + chr3_4:3189626-3189645 Msa0485490:three_prime_UTR 25.0%
! ACAATTCAGATTTAATGTCA+CGG + chr3_4:3189920-3189939 Msa0485490:intron 25.0%
ACACAATCACAATCAACAAT+CGG - chr3_4:3186895-3186914 None:intergenic 30.0%
TGATTCAAATCCTTGACATT+AGG + chr3_4:3186924-3186943 Msa0485490:intron 30.0%
GATTCAAATCCTTGACATTA+GGG + chr3_4:3186925-3186944 Msa0485490:intron 30.0%
! ATTTTCAAACCCTAATGTCA+AGG - chr3_4:3186937-3186956 None:intergenic 30.0%
GACATTAGGGTTTGAAAATT+TGG + chr3_4:3186938-3186957 Msa0485490:intron 30.0%
CATTAGGGTTTGAAAATTTG+GGG + chr3_4:3186940-3186959 Msa0485490:intron 30.0%
! TAAGATTGATTCTGGAAAAG+AGG + chr3_4:3187108-3187127 Msa0485490:five_prime_UTR 30.0%
GAAAATTCTCTCCTATTGTA+TGG + chr3_4:3187193-3187212 Msa0485490:five_prime_UTR 30.0%
TATTTACAATCATCAGCCAT+CGG - chr3_4:3187399-3187418 None:intergenic 30.0%
TATTTATCATCATCAGCCAT+TGG - chr3_4:3187462-3187481 None:intergenic 30.0%
! TCCACTATTTTCATAAGCAT+CGG - chr3_4:3187586-3187605 None:intergenic 30.0%
! AGAAATTGTAGCATTGAAGA+AGG + chr3_4:3187734-3187753 Msa0485490:five_prime_UTR 30.0%
ATTTCTCTCAAAGCTGAAAT+TGG - chr3_4:3187789-3187808 None:intergenic 30.0%
TGATGGTACTTATATGGTAA+TGG + chr3_4:3187884-3187903 Msa0485490:five_prime_UTR 30.0%
TCAAATATCTCCATGATAAC+TGG + chr3_4:3188006-3188025 Msa0485490:five_prime_UTR 30.0%
AAGTTGAAAATATGCGACTT+TGG + chr3_4:3188079-3188098 Msa0485490:five_prime_UTR 30.0%
GGCTTAAATTATCTCTGTTA+TGG + chr3_4:3188202-3188221 Msa0485490:intron 30.0%
AATGGCTGAATTAATTTCCA+AGG + chr3_4:3188324-3188343 Msa0485490:CDS 30.0%
CGTGAAGTTATTGATATTGA+AGG + chr3_4:3188695-3188714 Msa0485490:intron 30.0%
ATCTGTTCAGTTGCATTATT+CGG - chr3_4:3188883-3188902 None:intergenic 30.0%
ATTAATGTGGAAAGACAAGT+TGG - chr3_4:3189097-3189116 None:intergenic 30.0%
!! GTGATTGAAAATGGATTACA+AGG + chr3_4:3189635-3189654 Msa0485490:three_prime_UTR 30.0%
ATTACAAGGAATCAGTTGAA+TGG + chr3_4:3189649-3189668 Msa0485490:three_prime_UTR 30.0%
TGAATGGTATGAAGAAATGT+TGG + chr3_4:3189665-3189684 Msa0485490:three_prime_UTR 30.0%
! TTTTCAGATTAGGTTATCCT+TGG - chr3_4:3190003-3190022 None:intergenic 30.0%
!! TTGAAGAAGACTTTTCAAGG+CGG + chr3_4:3186660-3186679 Msa0485490:five_prime_UTR 35.0%
!!! TTTGGGGATTTTAGGGTTTT+AGG + chr3_4:3186956-3186975 Msa0485490:intron 35.0%
!!! TTGGGGATTTTAGGGTTTTA+GGG + chr3_4:3186957-3186976 Msa0485490:intron 35.0%
!!! AGGGTTTTAGGGTTTCAAAT+TGG + chr3_4:3186968-3186987 Msa0485490:intron 35.0%
!! TTTTGTGCTTGTTAATCCCA+TGG + chr3_4:3187006-3187025 Msa0485490:intron 35.0%
!!! ACAAAGTGTTTTAGGGAAGA+GGG + chr3_4:3187039-3187058 Msa0485490:five_prime_UTR 35.0%
TTACAAACATGGTTCCGTTA+AGG + chr3_4:3187072-3187091 Msa0485490:five_prime_UTR 35.0%
!! TGATGAAATTTTGCCACTTC+TGG + chr3_4:3187161-3187180 Msa0485490:five_prime_UTR 35.0%
GATGAAGAAAGTGATATGCA+GGG + chr3_4:3187327-3187346 Msa0485490:five_prime_UTR 35.0%
ATGAAGAAAGTGATATGCAG+GGG + chr3_4:3187328-3187347 Msa0485490:five_prime_UTR 35.0%
TTCTGATGAACTTTCACCAA+TGG + chr3_4:3187443-3187462 Msa0485490:five_prime_UTR 35.0%
!!! CTATTTTCATAAGCATCGGA+TGG - chr3_4:3187582-3187601 None:intergenic 35.0%
TCCGATGCTTATGAAAATAG+TGG + chr3_4:3187582-3187601 Msa0485490:five_prime_UTR 35.0%
! AAATAGTGGAATGATGCATG+TGG + chr3_4:3187596-3187615 Msa0485490:five_prime_UTR 35.0%
!! TGGTGTTGTCTATAAAGCTA+AGG + chr3_4:3187698-3187717 Msa0485490:five_prime_UTR 35.0%
TAACATCAACAATAGAGGGA+TGG - chr3_4:3187833-3187852 None:intergenic 35.0%
TGATGTTAAAGAAGTAGTCG+TGG + chr3_4:3187845-3187864 Msa0485490:five_prime_UTR 35.0%
! GATGATAATGATTGCGATGA+TGG + chr3_4:3187867-3187886 Msa0485490:five_prime_UTR 35.0%
! TTGCGATGATGGTACTTATA+TGG + chr3_4:3187878-3187897 Msa0485490:five_prime_UTR 35.0%
GTATGACCTTAAGCAGTTAT+TGG + chr3_4:3187917-3187936 Msa0485490:five_prime_UTR 35.0%
TTGACTCCAATAACTGCTTA+AGG - chr3_4:3187926-3187945 None:intergenic 35.0%
TTTATCTCACCCATACTGAA+AGG - chr3_4:3187957-3187976 None:intergenic 35.0%
TTCAAGAAGTTGCTTCATGA+AGG - chr3_4:3187982-3188001 None:intergenic 35.0%
TTCATGAAGCAACTTCTTGA+AGG + chr3_4:3187981-3188000 Msa0485490:five_prime_UTR 35.0%
! GAGAAGTATATTGCTTCAGA+GGG - chr3_4:3188126-3188145 None:intergenic 35.0%
! AGAGAAGTATATTGCTTCAG+AGG - chr3_4:3188127-3188146 None:intergenic 35.0%
GAAGCAATATACTTCTCTTG+TGG + chr3_4:3188129-3188148 Msa0485490:CDS 35.0%
TGAAGTTGAACAACTTGACA+AGG + chr3_4:3188368-3188387 Msa0485490:CDS 35.0%
!! CTTCAGATTTTTCGAACTCT+TGG + chr3_4:3188520-3188539 Msa0485490:CDS 35.0%
! ACAAAATTTGCTTTAGACCC+AGG - chr3_4:3188586-3188605 None:intergenic 35.0%
! ATTGAAGGTGTAGTATGCTA+AGG + chr3_4:3188710-3188729 Msa0485490:intron 35.0%
! TCTAGCTTATGATCCTGAAA+AGG + chr3_4:3188807-3188826 Msa0485490:CDS 35.0%
!!! GCAATCCAGTTTTTTCTTCA+TGG + chr3_4:3188987-3189006 Msa0485490:CDS 35.0%
CACTACCATGAAGAAAAAAC+TGG - chr3_4:3188995-3189014 None:intergenic 35.0%
!!! CAGTTTTTTCTTCATGGTAG+TGG + chr3_4:3188993-3189012 Msa0485490:CDS 35.0%
! AAAGACAAGTTGGAAAAGTG+AGG - chr3_4:3189087-3189106 None:intergenic 35.0%
GGCTCAATCAGAAAGAAAAT+TGG - chr3_4:3189356-3189375 None:intergenic 35.0%
ATTTCCTGGTGTAAAAATGC+AGG - chr3_4:3189419-3189438 None:intergenic 35.0%
GGTATGAAGAAATGTTGGAA+CGG + chr3_4:3189670-3189689 Msa0485490:three_prime_UTR 35.0%
TTGTGCCTTTCCTTTAATTG+TGG + chr3_4:3189748-3189767 Msa0485490:three_prime_UTR 35.0%
TGTGCCTTTCCTTTAATTGT+GGG + chr3_4:3189749-3189768 Msa0485490:three_prime_UTR 35.0%
ATCTGACATTGAAGAATGTC+AGG - chr3_4:3189883-3189902 None:intergenic 35.0%
TAGGATAAACCCAGTTGAAA+CGG - chr3_4:3189966-3189985 None:intergenic 35.0%
CTTGGCCTAATCAGAAAAAT+AGG - chr3_4:3189985-3190004 None:intergenic 35.0%
!! CTATTTTTCTGATTAGGCCA+AGG + chr3_4:3189983-3190002 Msa0485490:three_prime_UTR 35.0%
! GCGTTGAAGAAGACTTTTCA+AGG + chr3_4:3186657-3186676 Msa0485490:five_prime_UTR 40.0%
TGAAAGAAAACCCTAGACGA+TGG - chr3_4:3186765-3186784 None:intergenic 40.0%
!! CAGGGAGACAAAGTGTTTTA+GGG + chr3_4:3187032-3187051 Msa0485490:intron 40.0%
!!! GACAAAGTGTTTTAGGGAAG+AGG + chr3_4:3187038-3187057 Msa0485490:five_prime_UTR 40.0%
GGAAAAGAGGATAGAGAAGA+AGG + chr3_4:3187121-3187140 Msa0485490:five_prime_UTR 40.0%
AGAAGGTGAGATCTTGTTGA+TGG + chr3_4:3187138-3187157 Msa0485490:five_prime_UTR 40.0%
TTTCTTCTCTTCTCCAGAAG+TGG - chr3_4:3187177-3187196 None:intergenic 40.0%
TTAGCCAGATCCCATACAAT+AGG - chr3_4:3187207-3187226 None:intergenic 40.0%
GCTAAGAACTCTTCCAAAGA+TGG + chr3_4:3187222-3187241 Msa0485490:five_prime_UTR 40.0%
TGACTTTGTGACACCATCTT+TGG - chr3_4:3187238-3187257 None:intergenic 40.0%
CTTAAAACACCATCACCTTC+AGG - chr3_4:3187279-3187298 None:intergenic 40.0%
!! GAAGGTGATGGTGTTTTAAG+TGG + chr3_4:3187279-3187298 Msa0485490:five_prime_UTR 40.0%
TTCGAAGAATTCGTCTTGTG+TGG + chr3_4:3187305-3187324 Msa0485490:five_prime_UTR 40.0%
GGATGAAGAAAGTGATATGC+AGG + chr3_4:3187326-3187345 Msa0485490:five_prime_UTR 40.0%
GAACATAACGAAGTCGAAGT+GGG + chr3_4:3187353-3187372 Msa0485490:five_prime_UTR 40.0%
! TGATGATGATCTTTCACCGA+TGG + chr3_4:3187380-3187399 Msa0485490:five_prime_UTR 40.0%
AAAGCTAAGGACAAGAAGAC+TGG + chr3_4:3187711-3187730 Msa0485490:five_prime_UTR 40.0%
! AGCATTGAAGAAGGTGAAGA+TGG + chr3_4:3187743-3187762 Msa0485490:five_prime_UTR 40.0%
AACAATAGAGGGATGGTCTA+AGG - chr3_4:3187826-3187845 None:intergenic 40.0%
CATGATAACTGGATTCTCCA+CGG + chr3_4:3188017-3188036 Msa0485490:five_prime_UTR 40.0%
ATGATAACTGGATTCTCCAC+GGG + chr3_4:3188018-3188037 Msa0485490:five_prime_UTR 40.0%
TTAGATGTCTTCAAATCCCG+TGG - chr3_4:3188037-3188056 None:intergenic 40.0%
!! TATGCGACTTTGGAATGTCA+AGG + chr3_4:3188089-3188108 Msa0485490:exon 40.0%
! TTTGGAATGTCAAGGCAGTA+TGG + chr3_4:3188097-3188116 Msa0485490:exon 40.0%
CTTCTCTTGTGGTTACACTA+TGG + chr3_4:3188140-3188159 Msa0485490:CDS 40.0%
TTGTGGTTACACTATGGTAC+AGG + chr3_4:3188146-3188165 Msa0485490:CDS 40.0%
!! AGAGCACCTGAACTTTTGTT+GGG + chr3_4:3188253-3188272 Msa0485490:intron 40.0%
ACTCCAAGGCAATTGATATG+TGG + chr3_4:3188287-3188306 Msa0485490:CDS 40.0%
AGACCACATATCAATTGCCT+TGG - chr3_4:3188293-3188312 None:intergenic 40.0%
GCAATTGATATGTGGTCTCT+CGG + chr3_4:3188295-3188314 Msa0485490:CDS 40.0%
! TTCAGTTTTGCCCTTGAAAG+TGG - chr3_4:3188352-3188371 None:intergenic 40.0%
GTACACCAGATGAGAAAACA+TGG + chr3_4:3188542-3188561 Msa0485490:CDS 40.0%
ACTGGATTGCAATCAGATCT+CGG - chr3_4:3188977-3188996 None:intergenic 40.0%
TGGAAAAGTGAGGTTAACAC+AGG - chr3_4:3189077-3189096 None:intergenic 40.0%
! AACACAGTGATCGACTTCAT+AGG + chr3_4:3189147-3189166 Msa0485490:intron 40.0%
TACAGTGAACTGAGAAGGTA+CGG + chr3_4:3189205-3189224 Msa0485490:three_prime_UTR 40.0%
! CATATTTTACCCCGCATAGA+GGG - chr3_4:3189264-3189283 None:intergenic 40.0%
! ACATATTTTACCCCGCATAG+AGG - chr3_4:3189265-3189284 None:intergenic 40.0%
TTCTGATTGAGCCTTCCAAT+TGG + chr3_4:3189363-3189382 Msa0485490:three_prime_UTR 40.0%
TCTGATTGAGCCTTCCAATT+GGG + chr3_4:3189364-3189383 Msa0485490:three_prime_UTR 40.0%
GAAATGCTCTTGAACACTCT+GGG + chr3_4:3189434-3189453 Msa0485490:three_prime_UTR 40.0%
!! GAATCGTTGATAGCTGTTCT+TGG + chr3_4:3189474-3189493 Msa0485490:three_prime_UTR 40.0%
GCAGATGATGTTTCTCTACA+TGG - chr3_4:3189517-3189536 None:intergenic 40.0%
ACATCATGACCTGTTAACCA+TGG - chr3_4:3189541-3189560 None:intergenic 40.0%
GAAGCCCACAATTAAAGGAA+AGG - chr3_4:3189756-3189775 None:intergenic 40.0%
GTAAGGAAGCCCACAATTAA+AGG - chr3_4:3189761-3189780 None:intergenic 40.0%
TCACCTATTTCCGTTTCAAC+TGG + chr3_4:3189953-3189972 Msa0485490:intron 40.0%
CACCTATTTCCGTTTCAACT+GGG + chr3_4:3189954-3189973 Msa0485490:intron 40.0%
AACCCAGTTGAAACGGAAAT+AGG - chr3_4:3189959-3189978 None:intergenic 40.0%
AAGTATCCACGTTAGAACCT+TGG + chr3_4:3190028-3190047 Msa0485490:three_prime_UTR 40.0%
AGTATCCACGTTAGAACCTT+GGG + chr3_4:3190029-3190048 Msa0485490:three_prime_UTR 40.0%
TCCTTCGATTTCTTCATCGC+CGG + chr3_4:3186700-3186719 Msa0485490:five_prime_UTR 45.0%
GAGGTTACGAATTGCCTTAC+CGG - chr3_4:3186722-3186741 None:intergenic 45.0%
! TGTGCTTGTTAATCCCATGG+CGG + chr3_4:3187009-3187028 Msa0485490:intron 45.0%
!! GCAGGGAGACAAAGTGTTTT+AGG + chr3_4:3187031-3187050 Msa0485490:intron 45.0%
CTCTCCTATTGTATGGGATC+TGG + chr3_4:3187200-3187219 Msa0485490:five_prime_UTR 45.0%
!! TGGTGTCACAAAGTCATCTG+TGG + chr3_4:3187242-3187261 Msa0485490:five_prime_UTR 45.0%
GTGGATGAACAAAGTCCTGA+AGG + chr3_4:3187261-3187280 Msa0485490:five_prime_UTR 45.0%
GAACAAAGTCCTGAAGGTGA+TGG + chr3_4:3187267-3187286 Msa0485490:five_prime_UTR 45.0%
AAGAAAGTGATATGCAGGGG+TGG + chr3_4:3187331-3187350 Msa0485490:five_prime_UTR 45.0%
GGAACATAACGAAGTCGAAG+TGG + chr3_4:3187352-3187371 Msa0485490:five_prime_UTR 45.0%
ACAAGCTCACAAAGTCGAAG+TGG + chr3_4:3187418-3187437 Msa0485490:five_prime_UTR 45.0%
CAAGCTCACAAAGTCGAAGT+GGG + chr3_4:3187419-3187438 Msa0485490:five_prime_UTR 45.0%
AGAAGCTCAAGTGCAGAAGT+TGG + chr3_4:3187495-3187514 Msa0485490:five_prime_UTR 45.0%
GAAGAAGGTGAAGATGGACA+TGG + chr3_4:3187749-3187768 Msa0485490:five_prime_UTR 45.0%
AAAGTCGCAGCCTTTCAGTA+TGG + chr3_4:3187944-3187963 Msa0485490:five_prime_UTR 45.0%
AAGTCGCAGCCTTTCAGTAT+GGG + chr3_4:3187945-3187964 Msa0485490:five_prime_UTR 45.0%
CGTGGAGAATCCAGTTATCA+TGG - chr3_4:3188019-3188038 None:intergenic 45.0%
!! CAGAGCACCTGAACTTTTGT+TGG + chr3_4:3188252-3188271 Msa0485490:intron 45.0%
TTAGCGCCCAACAAAAGTTC+AGG - chr3_4:3188262-3188281 None:intergenic 45.0%
GGGCGCTAAAAAATACTCCA+AGG + chr3_4:3188273-3188292 Msa0485490:CDS 45.0%
! TTTCCAAGGAGCCACTTTCA+AGG + chr3_4:3188338-3188357 Msa0485490:CDS 45.0%
! TTCCAAGGAGCCACTTTCAA+GGG + chr3_4:3188339-3188358 Msa0485490:CDS 45.0%
CAGGATTATCCAAGTTGCCT+GGG + chr3_4:3188566-3188585 Msa0485490:CDS 45.0%
!!! CACTGGTTTGCCGGTTTTAT+CGG + chr3_4:3188756-3188775 Msa0485490:CDS 45.0%
!!! TTTGCCGGTTTTATCGGAGT+CGG + chr3_4:3188762-3188781 Msa0485490:CDS 45.0%
AATCCCGACTCCGATAAAAC+CGG - chr3_4:3188769-3188788 None:intergenic 45.0%
!! CGTCATGATTGGTTTCGTGA+AGG + chr3_4:3188944-3188963 Msa0485490:CDS 45.0%
TTGCAATCAGATCTCGGAAG+TGG - chr3_4:3188971-3188990 None:intergenic 45.0%
ACAGGTACTTATGCTAGAGC+TGG + chr3_4:3189027-3189046 Msa0485490:intron 45.0%
!! GTTAACACAGGCATTGGTCT+TGG - chr3_4:3189065-3189084 None:intergenic 45.0%
AGTGAGGTTAACACAGGCAT+TGG - chr3_4:3189071-3189090 None:intergenic 45.0%
CGATGTACAGTGAACTGAGA+AGG + chr3_4:3189200-3189219 Msa0485490:three_prime_UTR 45.0%
CTGATTGAGCCTTCCAATTG+GGG + chr3_4:3189365-3189384 Msa0485490:three_prime_UTR 45.0%
TGATTGAGCCTTCCAATTGG+GGG + chr3_4:3189366-3189385 Msa0485490:three_prime_UTR 45.0%
CAGAAAGTAGCCACGAAACT+TGG - chr3_4:3189395-3189414 None:intergenic 45.0%
! CTGTCCTGCATTTTTACACC+AGG + chr3_4:3189412-3189431 Msa0485490:three_prime_UTR 45.0%
!! GAGTGTTCAAGAGCATTTCC+TGG - chr3_4:3189433-3189452 None:intergenic 45.0%
GGAAATGCTCTTGAACACTC+TGG + chr3_4:3189433-3189452 Msa0485490:three_prime_UTR 45.0%
GAGAAACATCATCTGCACCA+TGG + chr3_4:3189521-3189540 Msa0485490:three_prime_UTR 45.0%
TCATCTGCACCATGGTTAAC+AGG + chr3_4:3189529-3189548 Msa0485490:three_prime_UTR 45.0%
ATGTTGGAACGGTTGCAAGA+AGG + chr3_4:3189681-3189700 Msa0485490:three_prime_UTR 45.0%
GTATCCACGTTAGAACCTTG+GGG + chr3_4:3190030-3190049 Msa0485490:three_prime_UTR 45.0%
TATCCACGTTAGAACCTTGG+GGG + chr3_4:3190031-3190050 Msa0485490:three_prime_UTR 45.0%
ACCGGCGATGAAGAAATCGA+AGG - chr3_4:3186704-3186723 None:intergenic 50.0%
CGATTTCTTCATCGCCGGTA+AGG + chr3_4:3186705-3186724 Msa0485490:intron 50.0%
TGCGTCGTGAATGGTATCAG+AGG - chr3_4:3186741-3186760 None:intergenic 50.0%
TTGTTAATCCCATGGCGGCA+GGG + chr3_4:3187014-3187033 Msa0485490:intron 50.0%
AGCTCAAGTGCAGAAGTTGG+TGG + chr3_4:3187498-3187517 Msa0485490:five_prime_UTR 50.0%
AGGTGAAGATGGACATGGAG+AGG + chr3_4:3187754-3187773 Msa0485490:five_prime_UTR 50.0%
GGTGAAGATGGACATGGAGA+GGG + chr3_4:3187755-3187774 Msa0485490:five_prime_UTR 50.0%
AAGATGGACATGGAGAGGGA+AGG + chr3_4:3187759-3187778 Msa0485490:five_prime_UTR 50.0%
GTGGTCTCTCGGCTGTATAA+TGG + chr3_4:3188306-3188325 Msa0485490:CDS 50.0%
! CCTGGCCATGTTTTCTCATC+TGG - chr3_4:3188550-3188569 None:intergenic 50.0%
CCAGATGAGAAAACATGGCC+AGG + chr3_4:3188547-3188566 Msa0485490:CDS 50.0%
CCAGGCAACTTGGATAATCC+TGG - chr3_4:3188568-3188587 None:intergenic 50.0%
CCAGGATTATCCAAGTTGCC+TGG + chr3_4:3188565-3188584 Msa0485490:CDS 50.0%
! TGCTTTAGACCCAGGCAACT+TGG - chr3_4:3188578-3188597 None:intergenic 50.0%
TTTCCAGCCGCATCTTTCAC+TGG + chr3_4:3188739-3188758 Msa0485490:CDS 50.0%
AAACCAGTGAAAGATGCGGC+TGG - chr3_4:3188745-3188764 None:intergenic 50.0%
CGGCAAACCAGTGAAAGATG+CGG - chr3_4:3188749-3188768 None:intergenic 50.0%
!! CGCATCTTTCACTGGTTTGC+CGG + chr3_4:3188747-3188766 Msa0485490:CDS 50.0%
!!! TTGCCGGTTTTATCGGAGTC+GGG + chr3_4:3188763-3188782 Msa0485490:CDS 50.0%
AAGCTGCTCTGCGTCATGAT+TGG + chr3_4:3188933-3188952 Msa0485490:CDS 50.0%
GTAGTGGTAGTTGCTCAGAC+AGG + chr3_4:3189009-3189028 Msa0485490:exon 50.0%
CGTTCCAAGTACCCTCTATG+CGG + chr3_4:3189250-3189269 Msa0485490:three_prime_UTR 50.0%
GTTCCAAGTACCCTCTATGC+GGG + chr3_4:3189251-3189270 Msa0485490:three_prime_UTR 50.0%
TTCCAAGTACCCTCTATGCG+GGG + chr3_4:3189252-3189271 Msa0485490:three_prime_UTR 50.0%
GAAACTTGGAAGCCCCCAAT+TGG - chr3_4:3189381-3189400 None:intergenic 50.0%
CTTGAACACTCTGGGCACAA+TGG + chr3_4:3189442-3189461 Msa0485490:three_prime_UTR 50.0%
TGGAACGGTTGCAAGAAGGA+TGG + chr3_4:3189685-3189704 Msa0485490:three_prime_UTR 50.0%
GCAATGCTCCCTACTAAGCT+TGG + chr3_4:3189707-3189726 Msa0485490:three_prime_UTR 50.0%
ATGCCACGCCAAGCTTAGTA+GGG - chr3_4:3189718-3189737 None:intergenic 50.0%
AATGCCACGCCAAGCTTAGT+AGG - chr3_4:3189719-3189738 None:intergenic 50.0%
CTTGTTAATCCCATGGCGGC+AGG + chr3_4:3187013-3187032 Msa0485490:intron 55.0%
TGCCCTTGAAAGTGGCTCCT+TGG - chr3_4:3188344-3188363 None:intergenic 55.0%
!! TACCCCGCATAGAGGGTACT+TGG - chr3_4:3189257-3189276 None:intergenic 55.0%
CTTGGAAGCCCCCAATTGGA+AGG - chr3_4:3189377-3189396 None:intergenic 55.0%
TTGGGGGCTTCCAAGTTTCG+TGG + chr3_4:3189382-3189401 Msa0485490:three_prime_UTR 55.0%
! TCACCCCCAAGGTTCTAACG+TGG - chr3_4:3190037-3190056 None:intergenic 55.0%
GACGATGGCTGCGTCGTGAA+TGG - chr3_4:3186750-3186769 None:intergenic 60.0%
TCACGACGCAGCCATCGTCT+AGG + chr3_4:3186751-3186770 Msa0485490:intron 60.0%
CACGACGCAGCCATCGTCTA+GGG + chr3_4:3186752-3186771 Msa0485490:intron 60.0%
CTTTGTCTCCCTGCCGCCAT+GGG - chr3_4:3187025-3187044 None:intergenic 60.0%
ACTTTGTCTCCCTGCCGCCA+TGG - chr3_4:3187026-3187045 None:intergenic 60.0%
GCTCCCTACTAAGCTTGGCG+TGG + chr3_4:3189712-3189731 Msa0485490:three_prime_UTR 60.0%
GTGGAGGAAGTTCACCCCCA+AGG - chr3_4:3190048-3190067 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3186638 3190078 3186638 ID=Msa0485490;Name=Msa0485490
chr3_4 mRNA 3186638 3190078 3186638 ID=Msa0485490-mRNA-1;Parent=Msa0485490;Name=Msa0485490-mRNA-1;_AED=0.12;_eAED=0.13;_QI=1152|0.85|0.87|1|0.57|0.37|8|858|174
chr3_4 exon 3186638 3186721 3186638 ID=Msa0485490-mRNA-1:exon:1098;Parent=Msa0485490-mRNA-1
chr3_4 exon 3187035 3188167 3187035 ID=Msa0485490-mRNA-1:exon:1099;Parent=Msa0485490-mRNA-1
chr3_4 exon 3188255 3188389 3188255 ID=Msa0485490-mRNA-1:exon:1100;Parent=Msa0485490-mRNA-1
chr3_4 exon 3188495 3188614 3188495 ID=Msa0485490-mRNA-1:exon:1101;Parent=Msa0485490-mRNA-1
chr3_4 exon 3188717 3188828 3188717 ID=Msa0485490-mRNA-1:exon:1102;Parent=Msa0485490-mRNA-1
chr3_4 exon 3188920 3189030 3188920 ID=Msa0485490-mRNA-1:exon:1103;Parent=Msa0485490-mRNA-1
chr3_4 exon 3189154 3189875 3189154 ID=Msa0485490-mRNA-1:exon:1104;Parent=Msa0485490-mRNA-1
chr3_4 exon 3189961 3190078 3189961 ID=Msa0485490-mRNA-1:exon:1105;Parent=Msa0485490-mRNA-1
chr3_4 five_prime_UTR 3186638 3186721 3186638 ID=Msa0485490-mRNA-1:five_prime_utr;Parent=Msa0485490-mRNA-1
chr3_4 five_prime_UTR 3187035 3188102 3187035 ID=Msa0485490-mRNA-1:five_prime_utr;Parent=Msa0485490-mRNA-1
chr3_4 CDS 3188103 3188167 3188103 ID=Msa0485490-mRNA-1:cds;Parent=Msa0485490-mRNA-1
chr3_4 CDS 3188255 3188389 3188255 ID=Msa0485490-mRNA-1:cds;Parent=Msa0485490-mRNA-1
chr3_4 CDS 3188495 3188614 3188495 ID=Msa0485490-mRNA-1:cds;Parent=Msa0485490-mRNA-1
chr3_4 CDS 3188717 3188828 3188717 ID=Msa0485490-mRNA-1:cds;Parent=Msa0485490-mRNA-1
chr3_4 CDS 3188920 3189012 3188920 ID=Msa0485490-mRNA-1:cds;Parent=Msa0485490-mRNA-1
chr3_4 three_prime_UTR 3189013 3189030 3189013 ID=Msa0485490-mRNA-1:three_prime_utr;Parent=Msa0485490-mRNA-1
chr3_4 three_prime_UTR 3189154 3189875 3189154 ID=Msa0485490-mRNA-1:three_prime_utr;Parent=Msa0485490-mRNA-1
chr3_4 three_prime_UTR 3189961 3190078 3189961 ID=Msa0485490-mRNA-1:three_prime_utr;Parent=Msa0485490-mRNA-1
Gene Sequence

>Msa0485490

ATGTCAAGGCAGTATGGAAGCCCTCTGAAGCAATATACTTCTCTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGCGCTAAAAAATACTCCAAGGCAATTGATATGTGGTCTCTCGGCTGTATAATGGCTGAATTAATTTCCAAGGAGCCACTTTCAAGGGCAAAACTGAAGTTGAACAACTTGACAAGTAACATTGTTTTGTTTGTTATCTGTCTTCAGATTTTTCGAACTCTTGGTACACCAGATGAGAAAACATGGCCAGGATTATCCAAGTTGCCTGGGTCTAAAGCAAATTTTGTTAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCCGCATCTTTCACTGGTTTGCCGGTTTTATCGGAGTCGGGATTTGACTTGTTGAATAAACTTCTAGCTTATGATCCTGAAAAGAGGATATCTGCAGAAGCTGCTCTGCGTCATGATTGGTTTCGTGAAGGTCCACTTCCGAGATCTGATTGCAATCCAGTTTTTTCTTCATGGTAG
Protein sequence

>Msa0485490

MSRQYGSPLKQYTSLVVTLWYRAPELLLGAKKYSKAIDMWSLGCIMAELISKEPLSRAKLKLNNLTSNIVLFVICLQIFRTLGTPDEKTWPGLSKLPGSKANFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLNKLLAYDPEKRISAEAALRHDWFREGPLPRSDCNPVFSSW*