Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637710 | XP_003594432.1 | 90.476 | 42 | 4 | 0 | 116 | 157 | 452 | 493 | 9.82e-14 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637710 | G7IFT2 | 90.476 | 42 | 4 | 0 | 116 | 157 | 452 | 493 | 4.69e-14 | 79.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637710 | Msa0876500 | -0.809224 | 2.102948e-50 | -8.615850e-47 |
| Msa0637710 | Msa0930830 | -0.832594 | 8.646910e-56 | -8.615850e-47 |
| Msa0637710 | Msa0960720 | 0.810067 | 1.385931e-50 | -8.615850e-47 |
| Msa0637710 | Msa0974080 | 0.800315 | 1.526625e-48 | -8.615850e-47 |
| Msa0637710 | Msa0994030 | 0.818415 | 1.983479e-52 | -8.615850e-47 |
| Msa0637710 | Msa1094200 | 0.829929 | 3.909090e-55 | -8.615850e-47 |
| Msa0637710 | Msa1113170 | 0.825181 | 5.392889e-54 | -8.615850e-47 |
| Msa0637710 | Msa1407640 | -0.821818 | 3.298757e-53 | -8.615850e-47 |
| Msa0637710 | Msa1419030 | 0.810264 | 1.256577e-50 | -8.615850e-47 |
| Msa0302580 | Msa0637710 | -0.811935 | 5.459419e-51 | -8.615850e-47 |
| Msa0549910 | Msa0637710 | 0.830986 | 2.155848e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637710 | MtrunA17_Chr2g0291491 | 90.476 | 42 | 4 | 0 | 116 | 157 | 452 | 493 | 9.03e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATGATTTAATTAATT+TGG | 0.125418 | 4_3:+30067437 | Msa0637710:three_prime_UTR |
| AGGCATGCACATATTCATTT+AGG | 0.184173 | 4_3:+30064679 | Msa0637710:intron |
| GATTATAACCACAATGTTTA+TGG | 0.205666 | 4_3:+30067294 | Msa0637710:three_prime_UTR |
| AACAGAATTGCATACCTTAA+TGG | 0.214783 | 4_3:-30064772 | None:intergenic |
| GGCATGCACATATTCATTTA+GGG | 0.295957 | 4_3:+30064680 | Msa0637710:intron |
| TGCTATTCTATGTTCTGGTT+GGG | 0.302164 | 4_3:+30067272 | Msa0637710:three_prime_UTR |
| CCACAGATTGGCTACAAGTT+TGG | 0.334146 | 4_3:+30067108 | Msa0637710:intron |
| TGTCAAGGCGGAAGGAGTTT+TGG | 0.341406 | 4_3:+30064713 | Msa0637710:CDS |
| TGTCAAAGTTGAGGGAGTTT+TGG | 0.346649 | 4_3:+30063786 | Msa0637710:CDS |
| ATAGAATTGTAAAGGAATAA+TGG | 0.350742 | 4_3:-30067388 | None:intergenic |
| TGCAGGGTTTGGCGCAGATT+TGG | 0.355003 | 4_3:+30067199 | Msa0637710:three_prime_UTR |
| TGATCATGATGTGGGCATTA+TGG | 0.365375 | 4_3:+30066796 | Msa0637710:CDS |
| TGACTTGCTATTCTATGTTC+TGG | 0.379033 | 4_3:+30067267 | Msa0637710:three_prime_UTR |
| AAACATTACATAAAACAATA+AGG | 0.382586 | 4_3:-30067335 | None:intergenic |
| TGCCGAAGCTAAGAAGTTAT+CGG | 0.383309 | 4_3:+30066757 | Msa0637710:CDS |
| TTGCTATTCTATGTTCTGGT+TGG | 0.406133 | 4_3:+30067271 | Msa0637710:three_prime_UTR |
| ATCCGATAACTTCTTAGCTT+CGG | 0.411066 | 4_3:-30066759 | None:intergenic |
| TGCATTTGTAGTGCAGGGTT+TGG | 0.412983 | 4_3:+30067188 | Msa0637710:three_prime_UTR |
| AATAGAATCGTAGACCTTGA+TGG | 0.414187 | 4_3:-30063845 | None:intergenic |
| CGCAGATTTGGACGCATGAA+TGG | 0.426098 | 4_3:+30067211 | Msa0637710:three_prime_UTR |
| TAAATCATGAAATTAACAAT+AGG | 0.435392 | 4_3:-30067427 | None:intergenic |
| GCTGGTTGCATTTGTAGTGC+AGG | 0.435561 | 4_3:+30067182 | Msa0637710:three_prime_UTR |
| GATTTAATTAATTTGGAAAG+TGG | 0.436350 | 4_3:+30067444 | Msa0637710:three_prime_UTR |
| GTAGATCTGAACAATACAAC+CGG | 0.453348 | 4_3:-30063705 | None:intergenic |
| GGAAAAGCCGGCACCATTTG+AGG | 0.460251 | 4_3:+30064067 | Msa0637710:CDS |
| AGAGGCAGCTGAAGTTCTAA+AGG | 0.461651 | 4_3:+30066823 | Msa0637710:CDS |
| TTGAGAGATGCTAGGTGGGC+TGG | 0.474727 | 4_3:+30067164 | Msa0637710:exon |
| TGTCATAAGAGTACCTCAAA+TGG | 0.482854 | 4_3:-30064080 | None:intergenic |
| AAAACTCCTTCCGCCTTGAC+AGG | 0.486371 | 4_3:-30064711 | None:intergenic |
| TTGCTATCTGTCAAAGTTGA+GGG | 0.486908 | 4_3:+30063778 | Msa0637710:CDS |
| TAGGGGTTTGCTACCTGTCA+AGG | 0.497476 | 4_3:+30064698 | Msa0637710:CDS |
| CTACAAGTTTGGTTCTGAAA+CGG | 0.505762 | 4_3:+30067119 | Msa0637710:CDS |
| AAGTAAAAGTCATCACTGTA+AGG | 0.511723 | 4_3:+30064046 | Msa0637710:intron |
| TCAAGATAATAGAATTGTAA+AGG | 0.512123 | 4_3:-30067396 | None:intergenic |
| CTGGTTGCATTTGTAGTGCA+GGG | 0.512901 | 4_3:+30067183 | Msa0637710:three_prime_UTR |
| CCACATCATGATCAGCTAGC+TGG | 0.533202 | 4_3:-30066787 | None:intergenic |
| TTGTTCATTTGAGAGATGCT+AGG | 0.544381 | 4_3:+30067156 | Msa0637710:exon |
| TTCATTTGAGAGATGCTAGG+TGG | 0.548091 | 4_3:+30067159 | Msa0637710:exon |
| TCATCACTGTAAGGAAAAGC+CGG | 0.553814 | 4_3:+30064055 | Msa0637710:CDS |
| AAGAGTACCTCAAATGGTGC+CGG | 0.568151 | 4_3:-30064074 | None:intergenic |
| TTGCTACCTGTCAAGGCGGA+AGG | 0.570703 | 4_3:+30064705 | Msa0637710:CDS |
| GCATGCACATATTCATTTAG+GGG | 0.580614 | 4_3:+30064681 | Msa0637710:CDS |
| CCAGCTAGCTGATCATGATG+TGG | 0.595217 | 4_3:+30066787 | Msa0637710:CDS |
| TTTGCTATCTGTCAAAGTTG+AGG | 0.599028 | 4_3:+30063777 | Msa0637710:CDS |
| TCATTTGAGAGATGCTAGGT+GGG | 0.601475 | 4_3:+30067160 | Msa0637710:exon |
| GGAAAATGCATCAAAACCAA+AGG | 0.618038 | 4_3:-30063683 | None:intergenic |
| TTGAGAGAGACATAGCAGAA+AGG | 0.625276 | 4_3:-30063644 | None:intergenic |
| ATGATAGACCATAAACATTG+TGG | 0.634331 | 4_3:-30067302 | None:intergenic |
| CAGCTAGCTGATCATGATGT+GGG | 0.635721 | 4_3:+30066788 | Msa0637710:CDS |
| TGTGGGCATTATGGAAAGAG+AGG | 0.640887 | 4_3:+30066805 | Msa0637710:CDS |
| TAGATCTGAACAATACAACC+GGG | 0.692630 | 4_3:-30063704 | None:intergenic |
| GGGTTTGCTACCTGTCAAGG+CGG | 0.712618 | 4_3:+30064701 | Msa0637710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATAATTACTTTTAGA+TGG | + | chr4_3:30065385-30065404 | Msa0637710:intron | 10.0% |
| !!! | GTAGTATTTTTATTTTTTTT+CGG | - | chr4_3:30066496-30066515 | None:intergenic | 10.0% |
| !! | AAAATAAAAATACTACTAAA+AGG | + | chr4_3:30066500-30066519 | Msa0637710:intron | 10.0% |
| !! | ATTTCATGATTTAATTAATT+TGG | + | chr4_3:30067437-30067456 | Msa0637710:three_prime_UTR | 10.0% |
| !! | AATTAATAGGAAAAAACTAT+AGG | + | chr4_3:30064280-30064299 | Msa0637710:intron | 15.0% |
| !!! | ATTTTTTCTTGTTTTTAAGA+AGG | + | chr4_3:30064817-30064836 | Msa0637710:intron | 15.0% |
| !!! | TTTTTTCTTGTTTTTAAGAA+GGG | + | chr4_3:30064818-30064837 | Msa0637710:intron | 15.0% |
| !!! | TGAAATTTTAGAGAAAAAAT+TGG | + | chr4_3:30065550-30065569 | Msa0637710:intron | 15.0% |
| !!! | GAAATTTTAGAGAAAAAATT+GGG | + | chr4_3:30065551-30065570 | Msa0637710:intron | 15.0% |
| !!! | TTCTCTTTGATTATTTATTT+TGG | + | chr4_3:30066114-30066133 | Msa0637710:intron | 15.0% |
| !! | TAAAGATAAAAATAAGAATC+CGG | - | chr4_3:30066855-30066874 | None:intergenic | 15.0% |
| !! | AAACATTACATAAAACAATA+AGG | - | chr4_3:30067338-30067357 | None:intergenic | 15.0% |
| !! | TAAATCATGAAATTAACAAT+AGG | - | chr4_3:30067430-30067449 | None:intergenic | 15.0% |
| !! | AAATAAGAAAAGCTAAAACA+TGG | - | chr4_3:30064217-30064236 | None:intergenic | 20.0% |
| !!! | ATTAATTTGAAATCAAAGAC+TGG | - | chr4_3:30064267-30064286 | None:intergenic | 20.0% |
| !!! | GTCTTTGATTTCAAATTAAT+AGG | + | chr4_3:30064267-30064286 | Msa0637710:intron | 20.0% |
| !!! | TTTTTTTATCAGTATGGTAA+TGG | + | chr4_3:30064434-30064453 | Msa0637710:intron | 20.0% |
| !! | TGTTATTGTCATTAAACTAT+AGG | - | chr4_3:30064569-30064588 | None:intergenic | 20.0% |
| !!! | TTGTTTTATGTTACTTGTAT+CGG | + | chr4_3:30064628-30064647 | Msa0637710:intron | 20.0% |
| !!! | TTGAACTTATAGCTTTTTTT+TGG | + | chr4_3:30065038-30065057 | Msa0637710:intron | 20.0% |
| !! | AAAACTGAAATGTTAAAGAT+TGG | - | chr4_3:30066141-30066160 | None:intergenic | 20.0% |
| !! | AGAGTTAAATTTACTAAACA+AGG | - | chr4_3:30066218-30066237 | None:intergenic | 20.0% |
| !! | TTTCAATTGTTATGATTTGA+CGG | + | chr4_3:30066237-30066256 | Msa0637710:intron | 20.0% |
| !! | TACACTTAAAGAATATGATA+TGG | + | chr4_3:30066463-30066482 | Msa0637710:intron | 20.0% |
| !!! | TTTTTTATTGAAATTGCATG+AGG | + | chr4_3:30067015-30067034 | Msa0637710:intron | 20.0% |
| !! | ATAGAATTGTAAAGGAATAA+TGG | - | chr4_3:30067391-30067410 | None:intergenic | 20.0% |
| !! | TCAAGATAATAGAATTGTAA+AGG | - | chr4_3:30067399-30067418 | None:intergenic | 20.0% |
| ! | TAATGCAAAGATTGAAAAGT+AGG | - | chr4_3:30064140-30064159 | None:intergenic | 25.0% |
| ! | TAAAGAGGACTAAAAATGAT+TGG | + | chr4_3:30064360-30064379 | Msa0637710:intron | 25.0% |
| !!! | ATAGGCTTTTTTTATCAGTA+TGG | + | chr4_3:30064428-30064447 | Msa0637710:intron | 25.0% |
| !! | ATTAAACTATAGGATTTGGT+GGG | - | chr4_3:30064559-30064578 | None:intergenic | 25.0% |
| ! | TGTCATTAAACTATAGGATT+TGG | - | chr4_3:30064563-30064582 | None:intergenic | 25.0% |
| ! | CAATAACAACTATATTATGC+AGG | + | chr4_3:30064581-30064600 | Msa0637710:intron | 25.0% |
| ! | CAAGAAAAAATAGATACTGA+AGG | - | chr4_3:30064808-30064827 | None:intergenic | 25.0% |
| ! | TGAAAAGGAAAAATTAGACA+TGG | + | chr4_3:30065119-30065138 | Msa0637710:intron | 25.0% |
| ! | TTAATCTATCACTTACAAAC+TGG | + | chr4_3:30065229-30065248 | Msa0637710:intron | 25.0% |
| ! | TAATCTATCACTTACAAACT+GGG | + | chr4_3:30065230-30065249 | Msa0637710:intron | 25.0% |
| !! | ACCACTTAATTTGAGAATTT+AGG | + | chr4_3:30065513-30065532 | Msa0637710:intron | 25.0% |
| ! | ACCTAAATTCTCAAATTAAG+TGG | - | chr4_3:30065517-30065536 | None:intergenic | 25.0% |
| ! | AAAGTTAAACATCAAAATGC+AGG | - | chr4_3:30065966-30065985 | None:intergenic | 25.0% |
| ! | ACATAAACATTGTCAGAAAA+AGG | - | chr4_3:30066571-30066590 | None:intergenic | 25.0% |
| ! | AGTTGTATTTGAACCAAATT+GGG | + | chr4_3:30066886-30066905 | Msa0637710:intron | 25.0% |
| ! | GATTATAACCACAATGTTTA+TGG | + | chr4_3:30067294-30067313 | Msa0637710:three_prime_UTR | 25.0% |
| !!! | GTTGATTTTGATTATCTGTA+TGG | + | chr4_3:30067358-30067377 | Msa0637710:three_prime_UTR | 25.0% |
| !!! | TTTTGATTATCTGTATGGAT+TGG | + | chr4_3:30067363-30067382 | Msa0637710:three_prime_UTR | 25.0% |
| ! | AAGGTCTACGATTCTATTTT+TGG | + | chr4_3:30063850-30063869 | Msa0637710:intron | 30.0% |
| !!! | AGTTGCTGATTTTTCTGATT+TGG | + | chr4_3:30063883-30063902 | Msa0637710:intron | 30.0% |
| TAAAATAGACATGCGTGTAA+TGG | + | chr4_3:30064004-30064023 | Msa0637710:intron | 30.0% | |
| AAGTAAAAGTCATCACTGTA+AGG | + | chr4_3:30064046-30064065 | Msa0637710:intron | 30.0% | |
| !! | TTGCTAAAGAGCATTAATGA+GGG | + | chr4_3:30064318-30064337 | Msa0637710:intron | 30.0% |
| GCTAGAAACAATTCAGATTT+AGG | - | chr4_3:30064402-30064421 | None:intergenic | 30.0% | |
| AGGTTGCTCTAATTGATATA+AGG | + | chr4_3:30064497-30064516 | Msa0637710:intron | 30.0% | |
| CATTAAACTATAGGATTTGG+TGG | - | chr4_3:30064560-30064579 | None:intergenic | 30.0% | |
| !!! | GACTGTTTTGATCGATTTTT+TGG | + | chr4_3:30064749-30064768 | Msa0637710:CDS | 30.0% |
| AACAGAATTGCATACCTTAA+TGG | - | chr4_3:30064775-30064794 | None:intergenic | 30.0% | |
| GCAAACAAGGTTTCAAAAAA+CGG | + | chr4_3:30064842-30064861 | Msa0637710:intron | 30.0% | |
| ! | TTTTTGTTCTCAACGTGAAA+AGG | - | chr4_3:30064930-30064949 | None:intergenic | 30.0% |
| TGTTGTGTTGTATGTTTATG+AGG | - | chr4_3:30065288-30065307 | None:intergenic | 30.0% | |
| TCATCTCTTATCTAAGTTCA+AGG | + | chr4_3:30065463-30065482 | Msa0637710:intron | 30.0% | |
| !!! | AGTTGCTTTTTCGTTTAGTT+GGG | + | chr4_3:30065864-30065883 | Msa0637710:intron | 30.0% |
| AGATATCTTTGTGTACTTTG+TGG | + | chr4_3:30066019-30066038 | Msa0637710:intron | 30.0% | |
| TGAACACACAAGTAATTGAA+AGG | - | chr4_3:30066166-30066185 | None:intergenic | 30.0% | |
| AATTGTTATGATTTGACGGT+GGG | + | chr4_3:30066241-30066260 | Msa0637710:intron | 30.0% | |
| GTTAACTATGAACTTTAGAC+TGG | - | chr4_3:30066417-30066436 | None:intergenic | 30.0% | |
| GTTTATGTTACACTCTTTGT+TGG | + | chr4_3:30066583-30066602 | Msa0637710:intron | 30.0% | |
| TCACAAGGAGAGATAATTTA+TGG | - | chr4_3:30066628-30066647 | None:intergenic | 30.0% | |
| !! | TTGTTGATTTATTCACTACC+TGG | + | chr4_3:30066679-30066698 | Msa0637710:intron | 30.0% |
| TCATATGGACATGATAAAGA+AGG | + | chr4_3:30066706-30066725 | Msa0637710:intron | 30.0% | |
| !! | GAAGTTCTAAAGGTAAAATC+CGG | + | chr4_3:30066833-30066852 | Msa0637710:intron | 30.0% |
| CAGTTGTATTTGAACCAAAT+TGG | + | chr4_3:30066885-30066904 | Msa0637710:intron | 30.0% | |
| GTTGTATTTGAACCAAATTG+GGG | + | chr4_3:30066887-30066906 | Msa0637710:intron | 30.0% | |
| TTGTATTTGAACCAAATTGG+GGG | + | chr4_3:30066888-30066907 | Msa0637710:intron | 30.0% | |
| ATGATAGACCATAAACATTG+TGG | - | chr4_3:30067305-30067324 | None:intergenic | 30.0% | |
| !! | GTTTAAGATGCGTTTTCCTT+TGG | + | chr4_3:30063667-30063686 | Msa0637710:CDS | 35.0% |
| GGAAAATGCATCAAAACCAA+AGG | - | chr4_3:30063686-30063705 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGATGCATTTTCC+CGG | + | chr4_3:30063686-30063705 | Msa0637710:CDS | 35.0% |
| TAGATCTGAACAATACAACC+GGG | - | chr4_3:30063707-30063726 | None:intergenic | 35.0% | |
| GTAGATCTGAACAATACAAC+CGG | - | chr4_3:30063708-30063727 | None:intergenic | 35.0% | |
| !!! | TCCAGCTAACTTGTCATTTT+TGG | + | chr4_3:30063742-30063761 | Msa0637710:CDS | 35.0% |
| !!! | CCAGCTAACTTGTCATTTTT+GGG | + | chr4_3:30063743-30063762 | Msa0637710:CDS | 35.0% |
| ! | TTTGCTATCTGTCAAAGTTG+AGG | + | chr4_3:30063777-30063796 | Msa0637710:CDS | 35.0% |
| TTGCTATCTGTCAAAGTTGA+GGG | + | chr4_3:30063778-30063797 | Msa0637710:CDS | 35.0% | |
| !!! | AGTTTTGGTGCTTTGTTTTG+CGG | + | chr4_3:30063801-30063820 | Msa0637710:CDS | 35.0% |
| ! | GATTGGATTTTTCACCATCA+AGG | + | chr4_3:30063831-30063850 | Msa0637710:CDS | 35.0% |
| AATAGAATCGTAGACCTTGA+TGG | - | chr4_3:30063848-30063867 | None:intergenic | 35.0% | |
| !! | TGTCATAAGAGTACCTCAAA+TGG | - | chr4_3:30064083-30064102 | None:intergenic | 35.0% |
| GCAAAGATTGAAAAGTAGGT+AGG | - | chr4_3:30064136-30064155 | None:intergenic | 35.0% | |
| ACTGGTGACAACAATATCAT+TGG | - | chr4_3:30064249-30064268 | None:intergenic | 35.0% | |
| !! | GTTGCTAAAGAGCATTAATG+AGG | + | chr4_3:30064317-30064336 | Msa0637710:intron | 35.0% |
| !! | CAAGTTGATCAATGCTAAAG+AGG | + | chr4_3:30064345-30064364 | Msa0637710:intron | 35.0% |
| !! | ATTGTTTCTAGCTTCTCGAT+AGG | + | chr4_3:30064410-30064429 | Msa0637710:intron | 35.0% |
| TCATGTGTATGTACATGTAC+AGG | + | chr4_3:30064659-30064678 | Msa0637710:intron | 35.0% | |
| AGGCATGCACATATTCATTT+AGG | + | chr4_3:30064679-30064698 | Msa0637710:intron | 35.0% | |
| GGCATGCACATATTCATTTA+GGG | + | chr4_3:30064680-30064699 | Msa0637710:intron | 35.0% | |
| GCATGCACATATTCATTTAG+GGG | + | chr4_3:30064681-30064700 | Msa0637710:CDS | 35.0% | |
| !!! | GATCGATTTTTTGGCCATTA+AGG | + | chr4_3:30064758-30064777 | Msa0637710:CDS | 35.0% |
| !! | TTTTAAGAAGGGTGCAAACA+AGG | + | chr4_3:30064829-30064848 | Msa0637710:intron | 35.0% |
| AACGTGAAAAGGTCCAAAAA+CGG | - | chr4_3:30064919-30064938 | None:intergenic | 35.0% | |
| GTCTGTAATAGAGTCAGTAA+CGG | - | chr4_3:30065018-30065037 | None:intergenic | 35.0% | |
| !! | TTAGCTTTTGAATCACGTAG+AGG | + | chr4_3:30065061-30065080 | Msa0637710:intron | 35.0% |
| ! | TAGCTTTTGAATCACGTAGA+GGG | + | chr4_3:30065062-30065081 | Msa0637710:intron | 35.0% |
| AGAGAAAGAGTGAGATGAAA+AGG | + | chr4_3:30065104-30065123 | Msa0637710:intron | 35.0% | |
| ACATGGAGAGACAAATAGAA+TGG | + | chr4_3:30065136-30065155 | Msa0637710:intron | 35.0% | |
| TTTAAGCCCAATAGAATACC+CGG | - | chr4_3:30065256-30065275 | None:intergenic | 35.0% | |
| ! | TGAATGAAGAGTGTGTGTAT+TGG | - | chr4_3:30065350-30065369 | None:intergenic | 35.0% |
| !!! | CAGTTGCTTTTTCGTTTAGT+TGG | + | chr4_3:30065863-30065882 | Msa0637710:intron | 35.0% |
| !!! | GTTGCTTTTTCGTTTAGTTG+GGG | + | chr4_3:30065865-30065884 | Msa0637710:intron | 35.0% |
| ATGGATACAGGGACAAAAAA+AGG | - | chr4_3:30065906-30065925 | None:intergenic | 35.0% | |
| AAATAACCATTGCACTAGCA+GGG | - | chr4_3:30065935-30065954 | None:intergenic | 35.0% | |
| TAAATAACCATTGCACTAGC+AGG | - | chr4_3:30065936-30065955 | None:intergenic | 35.0% | |
| ! | TCTTCAGTCTTTGTTACTTG+TGG | + | chr4_3:30065986-30066005 | Msa0637710:intron | 35.0% |
| AAACTGAACGTTATACCTTG+AGG | - | chr4_3:30066096-30066115 | None:intergenic | 35.0% | |
| CAATTGTTATGATTTGACGG+TGG | + | chr4_3:30066240-30066259 | Msa0637710:intron | 35.0% | |
| ATTGTTATGATTTGACGGTG+GGG | + | chr4_3:30066242-30066261 | Msa0637710:intron | 35.0% | |
| GATGAGAAATCAAGTCCATA+CGG | + | chr4_3:30066539-30066558 | Msa0637710:intron | 35.0% | |
| ACTCTTTGTTGGAGTTAGAT+GGG | + | chr4_3:30066594-30066613 | Msa0637710:intron | 35.0% | |
| ATCCGATAACTTCTTAGCTT+CGG | - | chr4_3:30066762-30066781 | None:intergenic | 35.0% | |
| TTGCATGAGGAAGATTGTAA+TGG | + | chr4_3:30067028-30067047 | Msa0637710:intron | 35.0% | |
| ! | ATGAGGAAGATTGTAATGGA+AGG | + | chr4_3:30067032-30067051 | Msa0637710:intron | 35.0% |
| ! | TTGTAATGGAAGGAGATTTG+TGG | + | chr4_3:30067042-30067061 | Msa0637710:intron | 35.0% |
| !! | CTACAAGTTTGGTTCTGAAA+CGG | + | chr4_3:30067119-30067138 | Msa0637710:CDS | 35.0% |
| TTGTTCATTTGAGAGATGCT+AGG | + | chr4_3:30067156-30067175 | Msa0637710:exon | 35.0% | |
| !! | TGACTTGCTATTCTATGTTC+TGG | + | chr4_3:30067267-30067286 | Msa0637710:three_prime_UTR | 35.0% |
| ! | TTGCTATTCTATGTTCTGGT+TGG | + | chr4_3:30067271-30067290 | Msa0637710:three_prime_UTR | 35.0% |
| ! | TGCTATTCTATGTTCTGGTT+GGG | + | chr4_3:30067272-30067291 | Msa0637710:three_prime_UTR | 35.0% |
| TTGAGAGAGACATAGCAGAA+AGG | - | chr4_3:30063647-30063666 | None:intergenic | 40.0% | |
| CCCAAAAATGACAAGTTAGC+TGG | - | chr4_3:30063746-30063765 | None:intergenic | 40.0% | |
| !!! | TGTCATTTTTGGGTCATTCG+AGG | + | chr4_3:30063753-30063772 | Msa0637710:CDS | 40.0% |
| !!! | GTCATTTTTGGGTCATTCGA+GGG | + | chr4_3:30063754-30063773 | Msa0637710:CDS | 40.0% |
| ! | TGTCAAAGTTGAGGGAGTTT+TGG | + | chr4_3:30063786-30063805 | Msa0637710:CDS | 40.0% |
| TCATCACTGTAAGGAAAAGC+CGG | + | chr4_3:30064055-30064074 | Msa0637710:CDS | 40.0% | |
| GTGTTCATTGTTGACATGTG+TGG | + | chr4_3:30064472-30064491 | Msa0637710:intron | 40.0% | |
| CATTGTTGACATGTGTGGTT+AGG | + | chr4_3:30064477-30064496 | Msa0637710:intron | 40.0% | |
| !! | CTATAGGATTTGGTGGGAAT+TGG | - | chr4_3:30064553-30064572 | None:intergenic | 40.0% |
| CAAGGTTTCAAAAAACGGAC+CGG | + | chr4_3:30064847-30064866 | Msa0637710:intron | 40.0% | |
| AAAAGGTCCAAAAACGGTCA+CGG | - | chr4_3:30064913-30064932 | None:intergenic | 40.0% | |
| GATACAAATAACGGTCTTCG+CGG | - | chr4_3:30065720-30065739 | None:intergenic | 40.0% | |
| !! | AAGGTTCTAAATAACGGTCG+CGG | - | chr4_3:30065797-30065816 | None:intergenic | 40.0% |
| ! | CGACCGTTATTTAGAACCTT+GGG | + | chr4_3:30065797-30065816 | Msa0637710:intron | 40.0% |
| !! | GCACCCAAGGTTCTAAATAA+CGG | - | chr4_3:30065803-30065822 | None:intergenic | 40.0% |
| TGAGAACATATTTGCACCCA+AGG | - | chr4_3:30065816-30065835 | None:intergenic | 40.0% | |
| ! | TTGTGTACTTTGTGGTTTGC+AGG | + | chr4_3:30066027-30066046 | Msa0637710:intron | 40.0% |
| AGGTATCAACGAGTACGATA+AGG | - | chr4_3:30066076-30066095 | None:intergenic | 40.0% | |
| !! | AGGTACTGAACACATGAAAC+AGG | - | chr4_3:30066198-30066217 | None:intergenic | 40.0% |
| AAAAATTGTCGTGTAGTCCG+AGG | - | chr4_3:30066377-30066396 | None:intergenic | 40.0% | |
| AGAAAAAGGAAGAGTCCGTA+TGG | - | chr4_3:30066557-30066576 | None:intergenic | 40.0% | |
| CACTCTTTGTTGGAGTTAGA+TGG | + | chr4_3:30066593-30066612 | Msa0637710:intron | 40.0% | |
| TGTTGGAGTTAGATGGGTAT+TGG | + | chr4_3:30066600-30066619 | Msa0637710:intron | 40.0% | |
| GTCAAACAACAGTCTTCACA+AGG | - | chr4_3:30066643-30066662 | None:intergenic | 40.0% | |
| TCACTACCTGGAAACTCATA+TGG | + | chr4_3:30066691-30066710 | Msa0637710:intron | 40.0% | |
| TCATGTCCATATGAGTTTCC+AGG | - | chr4_3:30066700-30066719 | None:intergenic | 40.0% | |
| TGCCGAAGCTAAGAAGTTAT+CGG | + | chr4_3:30066757-30066776 | Msa0637710:CDS | 40.0% | |
| TGATCATGATGTGGGCATTA+TGG | + | chr4_3:30066796-30066815 | Msa0637710:CDS | 40.0% | |
| TTGAACCAAATTGGGGGAAA+AGG | + | chr4_3:30066894-30066913 | Msa0637710:intron | 40.0% | |
| TTCATTTGAGAGATGCTAGG+TGG | + | chr4_3:30067159-30067178 | Msa0637710:exon | 40.0% | |
| TCATTTGAGAGATGCTAGGT+GGG | + | chr4_3:30067160-30067179 | Msa0637710:exon | 40.0% | |
| !!! | TGCTTTGTTTTGCGGCTGTT+TGG | + | chr4_3:30063809-30063828 | Msa0637710:CDS | 45.0% |
| ! | TGTTTTGCGGCTGTTTGGAT+TGG | + | chr4_3:30063814-30063833 | Msa0637710:CDS | 45.0% |
| !! | AAGAGTACCTCAAATGGTGC+CGG | - | chr4_3:30064077-30064096 | None:intergenic | 45.0% |
| TTCAAAAAACGGACCGGTGT+CGG | + | chr4_3:30064853-30064872 | Msa0637710:intron | 45.0% | |
| !! | CTGCCGATACCGATTTGTAA+CGG | - | chr4_3:30064887-30064906 | None:intergenic | 45.0% |
| TCACAGCAAAATCGCCGTTA+CGG | + | chr4_3:30064950-30064969 | Msa0637710:intron | 45.0% | |
| AATCACGTAGAGGGTGAAGT+TGG | + | chr4_3:30065071-30065090 | Msa0637710:intron | 45.0% | |
| ! | GTAGAGGGTGAAGTTGGTTA+TGG | + | chr4_3:30065077-30065096 | Msa0637710:intron | 45.0% |
| AGAATCAGCAGCAGTGTATG+AGG | + | chr4_3:30065188-30065207 | Msa0637710:intron | 45.0% | |
| AGTGTATGAGGAAGGGAGTA+AGG | + | chr4_3:30065200-30065219 | Msa0637710:intron | 45.0% | |
| ATGAGGAAGGGAGTAAGGTT+AGG | + | chr4_3:30065205-30065224 | Msa0637710:intron | 45.0% | |
| TGAGGAAGGGAGTAAGGTTA+GGG | + | chr4_3:30065206-30065225 | Msa0637710:intron | 45.0% | |
| CTATCACTTACAAACTGGGC+CGG | + | chr4_3:30065234-30065253 | Msa0637710:intron | 45.0% | |
| TATCACTTACAAACTGGGCC+GGG | + | chr4_3:30065235-30065254 | Msa0637710:intron | 45.0% | |
| GGACGCTGCGATACAAATAA+CGG | - | chr4_3:30065729-30065748 | None:intergenic | 45.0% | |
| CGTTAAGGTTGTCGCGATTT+CGG | - | chr4_3:30065759-30065778 | None:intergenic | 45.0% | |
| ! | GCGACCGTTATTTAGAACCT+TGG | + | chr4_3:30065796-30065815 | Msa0637710:intron | 45.0% |
| TTTCGTTTAGTTGGGGCTTG+TGG | + | chr4_3:30065872-30065891 | Msa0637710:intron | 45.0% | |
| CGAGTACGATAAGGAGATCA+AGG | - | chr4_3:30066067-30066086 | None:intergenic | 45.0% | |
| TCGTACTCGTTGATACCTCA+AGG | + | chr4_3:30066078-30066097 | Msa0637710:intron | 45.0% | |
| TTATGATTTGACGGTGGGGT+GGG | + | chr4_3:30066246-30066265 | Msa0637710:intron | 45.0% | |
| TCACTCCTTGTACTTGTCCT+CGG | + | chr4_3:30066357-30066376 | Msa0637710:intron | 45.0% | |
| CAGCTAGCTGATCATGATGT+GGG | + | chr4_3:30066788-30066807 | Msa0637710:CDS | 45.0% | |
| TGTGGGCATTATGGAAAGAG+AGG | + | chr4_3:30066805-30066824 | Msa0637710:CDS | 45.0% | |
| ! | AGAGGCAGCTGAAGTTCTAA+AGG | + | chr4_3:30066823-30066842 | Msa0637710:CDS | 45.0% |
| ! | CAACTCCTTTTCCCCCAATT+TGG | - | chr4_3:30066902-30066921 | None:intergenic | 45.0% |
| CAAATTGGGGGAAAAGGAGT+TGG | + | chr4_3:30066900-30066919 | Msa0637710:intron | 45.0% | |
| TCCTCTACTTGTCCACAGAT+TGG | + | chr4_3:30067096-30067115 | Msa0637710:intron | 45.0% | |
| CCAAACTTGTAGCCAATCTG+TGG | - | chr4_3:30067111-30067130 | None:intergenic | 45.0% | |
| ! | CCACAGATTGGCTACAAGTT+TGG | + | chr4_3:30067108-30067127 | Msa0637710:intron | 45.0% |
| CTGGTTGCATTTGTAGTGCA+GGG | + | chr4_3:30067183-30067202 | Msa0637710:three_prime_UTR | 45.0% | |
| TGCATTTGTAGTGCAGGGTT+TGG | + | chr4_3:30067188-30067207 | Msa0637710:three_prime_UTR | 45.0% | |
| !! | TATTTATTATGTTATAATTA+TGG | + | chr4_3:30065607-30065626 | Msa0637710:intron | 5.0% |
| !!! | AATTTTTAAATAATGATAAT+AGG | + | chr4_3:30066390-30066409 | Msa0637710:intron | 5.0% |
| !! | TAGGGGTTTGCTACCTGTCA+AGG | + | chr4_3:30064698-30064717 | Msa0637710:CDS | 50.0% |
| AAAACTCCTTCCGCCTTGAC+AGG | - | chr4_3:30064714-30064733 | None:intergenic | 50.0% | |
| ! | TGTCAAGGCGGAAGGAGTTT+TGG | + | chr4_3:30064713-30064732 | Msa0637710:CDS | 50.0% |
| TCAAAAAACGGACCGGTGTC+GGG | + | chr4_3:30064854-30064873 | Msa0637710:intron | 50.0% | |
| GGATTGCGGCCGTTACAAAT+CGG | + | chr4_3:30064875-30064894 | Msa0637710:intron | 50.0% | |
| CGGCCGTTACAAATCGGTAT+CGG | + | chr4_3:30064881-30064900 | Msa0637710:intron | 50.0% | |
| GAGTCAGTAACGGTGTTTCG+CGG | - | chr4_3:30065008-30065027 | None:intergenic | 50.0% | |
| TCAGCAGCAGTGTATGAGGA+AGG | + | chr4_3:30065192-30065211 | Msa0637710:intron | 50.0% | |
| CAGCAGCAGTGTATGAGGAA+GGG | + | chr4_3:30065193-30065212 | Msa0637710:intron | 50.0% | |
| AACTGGGCCGGGTATTCTAT+TGG | + | chr4_3:30065246-30065265 | Msa0637710:intron | 50.0% | |
| ACTGGGCCGGGTATTCTATT+GGG | + | chr4_3:30065247-30065266 | Msa0637710:intron | 50.0% | |
| TGTCGCGATTTCGGCTGTAA+CGG | - | chr4_3:30065750-30065769 | None:intergenic | 50.0% | |
| AACCATTGCACTAGCAGGGA+GGG | - | chr4_3:30065931-30065950 | None:intergenic | 50.0% | |
| TAACCATTGCACTAGCAGGG+AGG | - | chr4_3:30065932-30065951 | None:intergenic | 50.0% | |
| GTTATGATTTGACGGTGGGG+TGG | + | chr4_3:30066245-30066264 | Msa0637710:intron | 50.0% | |
| TATGATTTGACGGTGGGGTG+GGG | + | chr4_3:30066247-30066266 | Msa0637710:intron | 50.0% | |
| GTAGTCCGAGGACAAGTACA+AGG | - | chr4_3:30066365-30066384 | None:intergenic | 50.0% | |
| CCACATCATGATCAGCTAGC+TGG | - | chr4_3:30066790-30066809 | None:intergenic | 50.0% | |
| CCAGCTAGCTGATCATGATG+TGG | + | chr4_3:30066787-30066806 | Msa0637710:CDS | 50.0% | |
| GCCAATCTGTGGACAAGTAG+AGG | - | chr4_3:30067100-30067119 | None:intergenic | 50.0% | |
| GCTGGTTGCATTTGTAGTGC+AGG | + | chr4_3:30067182-30067201 | Msa0637710:three_prime_UTR | 50.0% | |
| CGCAGATTTGGACGCATGAA+TGG | + | chr4_3:30067211-30067230 | Msa0637710:three_prime_UTR | 50.0% | |
| GGAAAAGCCGGCACCATTTG+AGG | + | chr4_3:30064067-30064086 | Msa0637710:CDS | 55.0% | |
| !! | GGGTTTGCTACCTGTCAAGG+CGG | + | chr4_3:30064701-30064720 | Msa0637710:CDS | 55.0% |
| TTGCTACCTGTCAAGGCGGA+AGG | + | chr4_3:30064705-30064724 | Msa0637710:CDS | 55.0% | |
| AGGTCCAAAAACGGTCACGG+TGG | - | chr4_3:30064910-30064929 | None:intergenic | 55.0% | |
| CAGGGAGGGAGATGGATACA+GGG | - | chr4_3:30065917-30065936 | None:intergenic | 55.0% | |
| ATGATTTGACGGTGGGGTGG+GGG | + | chr4_3:30066248-30066267 | Msa0637710:intron | 55.0% | |
| TTGAGAGATGCTAGGTGGGC+TGG | + | chr4_3:30067164-30067183 | Msa0637710:exon | 55.0% | |
| TGCAGGGTTTGGCGCAGATT+TGG | + | chr4_3:30067199-30067218 | Msa0637710:three_prime_UTR | 55.0% | |
| ! | GCAGCCACCGTGACCGTTTT+TGG | + | chr4_3:30064903-30064922 | Msa0637710:intron | 60.0% |
| GCCGTTACGGAACGCCGTTA+CGG | + | chr4_3:30064963-30064982 | Msa0637710:intron | 60.0% | |
| GCCGTAACGGCGTTCCGTAA+CGG | - | chr4_3:30064967-30064986 | None:intergenic | 60.0% | |
| ACGGTGTTTCGCGGCCGTAA+CGG | - | chr4_3:30064999-30065018 | None:intergenic | 60.0% | |
| GCAGGGAGGGAGATGGATAC+AGG | - | chr4_3:30065918-30065937 | None:intergenic | 60.0% | |
| TGCACTAGCAGGGAGGGAGA+TGG | - | chr4_3:30065925-30065944 | None:intergenic | 60.0% | |
| CTCCCTCCCTGCTAGTGCAA+TGG | + | chr4_3:30065926-30065945 | Msa0637710:intron | 60.0% | |
| TGATTTGACGGTGGGGTGGG+GGG | + | chr4_3:30066249-30066268 | Msa0637710:intron | 60.0% | |
| ! | ACGGACCGGTGTCGGGATTG+CGG | + | chr4_3:30064861-30064880 | Msa0637710:intron | 65.0% |
| AACGGCCGCAATCCCGACAC+CGG | - | chr4_3:30064869-30064888 | None:intergenic | 65.0% | |
| ACGGCGTTTCGCGGCCGTAA+CGG | - | chr4_3:30064980-30064999 | None:intergenic | 65.0% | |
| ACGGCCGCGAAACGCCGTTA+CGG | + | chr4_3:30064982-30065001 | Msa0637710:intron | 65.0% | |
| TCGCGATCGCGGTCGCGTTA+AGG | - | chr4_3:30065774-30065793 | None:intergenic | 65.0% | |
| GATTTGACGGTGGGGTGGGG+GGG | + | chr4_3:30066250-30066269 | Msa0637710:intron | 65.0% | |
| GCGGCCGTAACGGCGTTTCG+CGG | - | chr4_3:30064989-30065008 | None:intergenic | 70.0% | |
| AACGGTCGCGGTCGCGATCG+CGG | - | chr4_3:30065785-30065804 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 30063641 | 30067466 | 30063641 | ID=Msa0637710;Name=Msa0637710 |
| chr4_3 | mRNA | 30063641 | 30067466 | 30063641 | ID=Msa0637710-mRNA-1;Parent=Msa0637710;Name=Msa0637710-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.5|0.6|1|0.25|0.2|5|299|174 |
| chr4_3 | exon | 30063641 | 30063852 | 30063641 | ID=Msa0637710-mRNA-1:exon:7245;Parent=Msa0637710-mRNA-1 |
| chr4_3 | exon | 30064049 | 30064088 | 30064049 | ID=Msa0637710-mRNA-1:exon:7246;Parent=Msa0637710-mRNA-1 |
| chr4_3 | exon | 30064681 | 30064779 | 30064681 | ID=Msa0637710-mRNA-1:exon:7247;Parent=Msa0637710-mRNA-1 |
| chr4_3 | exon | 30066725 | 30066844 | 30066725 | ID=Msa0637710-mRNA-1:exon:7248;Parent=Msa0637710-mRNA-1 |
| chr4_3 | exon | 30067114 | 30067466 | 30067114 | ID=Msa0637710-mRNA-1:exon:7249;Parent=Msa0637710-mRNA-1 |
| chr4_3 | CDS | 30063641 | 30063852 | 30063641 | ID=Msa0637710-mRNA-1:cds;Parent=Msa0637710-mRNA-1 |
| chr4_3 | CDS | 30064049 | 30064088 | 30064049 | ID=Msa0637710-mRNA-1:cds;Parent=Msa0637710-mRNA-1 |
| chr4_3 | CDS | 30064681 | 30064779 | 30064681 | ID=Msa0637710-mRNA-1:cds;Parent=Msa0637710-mRNA-1 |
| chr4_3 | CDS | 30066725 | 30066844 | 30066725 | ID=Msa0637710-mRNA-1:cds;Parent=Msa0637710-mRNA-1 |
| chr4_3 | CDS | 30067114 | 30067167 | 30067114 | ID=Msa0637710-mRNA-1:cds;Parent=Msa0637710-mRNA-1 |
| chr4_3 | three_prime_UTR | 30067168 | 30067466 | 30067168 | ID=Msa0637710-mRNA-1:three_prime_utr;Parent=Msa0637710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
