AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433410 MtrunA17_Chr3g0139001 92.391 184 14 0 1 184 23 206 5.18e-117 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433410 AT5G10700.2 60.335 179 54 3 6 184 24 185 9.16e-73 218
Msa0433410 AT5G10700.1 60.335 179 54 3 6 184 24 185 9.35e-73 218

Find 64 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCAGTCTTACTGTATT+TGG 0.185411 3_2:-85840114 Msa0433410:three_prime_UTR
GGGTTGACTCATTGAGTTAA+AGG 0.322492 3_2:+85843177 None:intergenic
ACGCTTCTGTTTCCGCGGTT+TGG 0.376613 3_2:-85843018 Msa0433410:CDS
CTGATCGATACTTGGCCATT+AGG 0.378184 3_2:-85843064 Msa0433410:CDS
TTTGTGGGTCCTCTTTCAAT+TGG 0.379259 3_2:-85840252 Msa0433410:three_prime_UTR
TACACTGTATGAAGTATAAC+AGG 0.402947 3_2:-85840220 Msa0433410:three_prime_UTR
ATCTGAAACAGCCATAGTTT+AGG 0.421027 3_2:+85840327 None:intergenic
AGTGGTGGAATCGGTGGAGG+CGG 0.421097 3_2:+85843156 None:intergenic
TGAGTAACCACACTGCCTAA+TGG 0.453176 3_2:+85843049 None:intergenic
GGTGACAGGATCGTCTTTGT+TGG 0.462494 3_2:+85842994 None:intergenic
TACGAAGATACAATTGACTT+AGG 0.468453 3_2:+85840411 None:intergenic
TGGTCCAATACGTGGTGCTC+CGG 0.468634 3_2:-85843093 Msa0433410:CDS
GATACAATTGACTTAGGGTA+AGG 0.468771 3_2:+85840417 None:intergenic
TTGTCTGAGAAGCTGACATC+TGG 0.475783 3_2:-85840504 Msa0433410:CDS
GAGAGTGGTGGAATCGGTGG+AGG 0.477145 3_2:+85843153 None:intergenic
TAAAGGTGAGCTGACTCGTC+CGG 0.477990 3_2:+85843194 None:intergenic
CTCCACTTCAACTGATTCGC+CGG 0.486687 3_2:-85843131 Msa0433410:CDS
GTCGGGGCTACAATAATCAA+TGG 0.500768 3_2:+85842973 None:intergenic
CACGCCGGAGCACCACGTAT+TGG 0.503895 3_2:+85843089 None:intergenic
GGCGTGATCTGATCGATACT+TGG 0.507820 3_2:-85843072 Msa0433410:CDS
TTGTCCAAATACAGTAAGAC+TGG 0.511524 3_2:+85840110 None:intergenic
GGAGAGAGTGGTGGAATCGG+TGG 0.515762 3_2:+85843150 None:intergenic
TGAGAAGGCGAGGTACGAAC+GGG 0.519329 3_2:+85843261 None:intergenic
GTGGTGGAATCGGTGGAGGC+GGG 0.520690 3_2:+85843157 None:intergenic
TTGAGAAGGCGAGGTACGAA+CGG 0.522363 3_2:+85843260 None:intergenic
ATTGAAAGAGGACCCACAAA+AGG 0.525665 3_2:+85840255 None:intergenic
ACGAAGATACAATTGACTTA+GGG 0.534074 3_2:+85840412 None:intergenic
ACAGAAATACCAATTGAAAG+AGG 0.538044 3_2:+85840243 None:intergenic
TTCCGGCGAATCAGTTGAAG+TGG 0.546716 3_2:+85843129 None:intergenic
AGTGGAGAGAGTGGTGGAAT+CGG 0.547804 3_2:+85843147 None:intergenic
TCTACGTGTCAGTCTGTCAA+TGG 0.550680 3_2:-85843320 Msa0433410:exon
CTACAATAATCAATGGTGAC+AGG 0.550910 3_2:+85842980 None:intergenic
AGGCGAGGTACGAACGGGAG+GGG 0.553596 3_2:+85843266 None:intergenic
TTAGGTCACACTTGAAGTGA+AGG 0.554959 3_2:-85840547 Msa0433410:intron
GTGGGATCATTCATAAAGTG+TGG 0.560984 3_2:-85840482 Msa0433410:CDS
GGGTTGAAGAGACGAAGCGT+AGG 0.561056 3_2:+85843286 None:intergenic
TTAGGCAGTGTGGTTACTCA+AGG 0.562328 3_2:-85843046 Msa0433410:CDS
GAAGGCGAGGTACGAACGGG+AGG 0.562660 3_2:+85843264 None:intergenic
AAGGCGAGGTACGAACGGGA+GGG 0.566860 3_2:+85843265 None:intergenic
TCTGAGAAGCTGACATCTGG+TGG 0.567728 3_2:-85840501 Msa0433410:CDS
GCCGGAAAACGTCGATGTTG+TGG 0.569743 3_2:-85843113 Msa0433410:CDS
TGAAGAGACGAAGCGTAGGA+AGG 0.573707 3_2:+85843290 None:intergenic
AGAGGACCCACAAAAGGCAG+AGG 0.576874 3_2:+85840261 None:intergenic
ACTAAACTTCGTTCTTGAGA+AGG 0.577942 3_2:+85843246 None:intergenic
AGTTGAAGTGGAGAGAGTGG+TGG 0.595216 3_2:+85843141 None:intergenic
ATACAGTGGATTCTAAAACT+AGG 0.598395 3_2:+85840016 None:intergenic
GAAGAGACGAAGCGTAGGAA+GGG 0.601157 3_2:+85843291 None:intergenic
GAAACAGCCATAGTTTAGGA+AGG 0.606288 3_2:+85840331 None:intergenic
GAGGACCCACAAAAGGCAGA+GGG 0.612024 3_2:+85840262 None:intergenic
ATCAGTTGAAGTGGAGAGAG+TGG 0.618089 3_2:+85843138 None:intergenic
TAGGTCACACTTGAAGTGAA+GGG 0.618162 3_2:-85840546 Msa0433410:CDS
ACTTCGTTCTTGAGAAGGCG+AGG 0.622634 3_2:+85843251 None:intergenic
CTGAGAAGCTGACATCTGGT+GGG 0.629502 3_2:-85840500 Msa0433410:CDS
TTAACATCCATCGTACGTTG+AGG 0.635696 3_2:-85840135 Msa0433410:three_prime_UTR
TTGCCACGCTTCTGTTTCCG+CGG 0.641384 3_2:-85843023 Msa0433410:CDS
TGAAGTATAACAGGAAGTTG+CGG 0.647231 3_2:-85840211 Msa0433410:three_prime_UTR
ACTGGAACCTCAACGTACGA+TGG 0.649045 3_2:+85840128 None:intergenic
CGATGTTGTGGTCCAATACG+TGG 0.652164 3_2:-85843101 Msa0433410:CDS
GTCTTTGTTGGACCAAACCG+CGG 0.653891 3_2:+85843006 None:intergenic
AAACCGCGGAAACAGAAGCG+TGG 0.664099 3_2:+85843020 None:intergenic
TACTTGGCCATTAGGCAGTG+TGG 0.667910 3_2:-85843056 Msa0433410:CDS
TGGGATCATTCATAAAGTGT+GGG 0.672024 3_2:-85840481 Msa0433410:CDS
GTTTAGTGTCACTTTACACG+CGG 0.717247 3_2:-85843230 Msa0433410:CDS
AAGTATCGATCAGATCACGC+CGG 0.740521 3_2:+85843074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAAATAAAAAATCATA+AGG + chr3_2:85842705-85842724 None:intergenic 10.0%
!! AGTTTAAATAAAAAATCATA+AGG - chr3_2:85842705-85842724 Msa0433410:intron 10.0%
!! AAAAAAAAAATAAAGAAGAG+AGG + chr3_2:85840440-85840459 None:intergenic 15.0%
!! TTTAATATTGTCTTTCTTAT+TGG - chr3_2:85841533-85841552 Msa0433410:intron 15.0%
!! AAGACAAAAAAAAAAAAATG+AGG + chr3_2:85842026-85842045 None:intergenic 15.0%
!! ATGTTTATTATATATACTGT+TGG - chr3_2:85842114-85842133 Msa0433410:intron 15.0%
!!! TTTAAACTTCATTTTTTTTG+AGG - chr3_2:85842579-85842598 Msa0433410:intron 15.0%
!!! TTAAACTTCATTTTTTTTGA+GGG - chr3_2:85842580-85842599 Msa0433410:intron 15.0%
!!! TATGCAATCTGTTTAATTTT+AGG - chr3_2:85840496-85840515 Msa0433410:CDS 20.0%
!!! ATGCAATCTGTTTAATTTTA+GGG - chr3_2:85840497-85840516 Msa0433410:CDS 20.0%
!! ACATTCATTTATCATATACA+TGG + chr3_2:85841297-85841316 None:intergenic 20.0%
!! ATGTTTATGAATATAGTTAC+AGG + chr3_2:85841888-85841907 None:intergenic 20.0%
!! GTAACTATATTCATAAACAT+AGG - chr3_2:85841888-85841907 Msa0433410:intron 20.0%
!!! TACTAAGCAATTTTTTTTTG+AGG - chr3_2:85842509-85842528 Msa0433410:intron 20.0%
!!! ACTAAGCAATTTTTTTTTGA+GGG - chr3_2:85842510-85842529 Msa0433410:intron 20.0%
!!! TAAACTTCATTTTTTTTGAG+GGG - chr3_2:85842581-85842600 Msa0433410:intron 20.0%
!! TTAACATACAATTAGCAATT+TGG - chr3_2:85842747-85842766 Msa0433410:intron 20.0%
!!! GATTATTCAATTCTTTTTTG+AGG - chr3_2:85843160-85843179 Msa0433410:CDS 20.0%
! TAATACTTCTACATAAACCA+CGG - chr3_2:85840635-85840654 Msa0433410:intron 25.0%
! TTTGCCAATGCAAAATAAAA+TGG - chr3_2:85840718-85840737 Msa0433410:intron 25.0%
!!! GAATCCATTTTATTTTGCAT+TGG + chr3_2:85840725-85840744 None:intergenic 25.0%
!!! TCAAACATGTGATTTTTAGT+CGG - chr3_2:85840743-85840762 Msa0433410:intron 25.0%
!!! TTTGTTCATTTTTGTACATG+CGG - chr3_2:85841316-85841335 Msa0433410:intron 25.0%
! TCTAAATTCTAATTGACAGA+GGG + chr3_2:85841416-85841435 None:intergenic 25.0%
! TTCTAAATTCTAATTGACAG+AGG + chr3_2:85841417-85841436 None:intergenic 25.0%
! TCTGTCAATTAGAATTTAGA+AGG - chr3_2:85841416-85841435 Msa0433410:intron 25.0%
! CTGTCAATTAGAATTTAGAA+GGG - chr3_2:85841417-85841436 Msa0433410:intron 25.0%
! TGTCAATTAGAATTTAGAAG+GGG - chr3_2:85841418-85841437 Msa0433410:intron 25.0%
! AAAAAATGAGGATATCATTG+TGG + chr3_2:85842014-85842033 None:intergenic 25.0%
! AATTTGTAGTTAGCTCATTT+AGG + chr3_2:85842084-85842103 None:intergenic 25.0%
!! TAATTTGTCCAGATAAACTA+AGG - chr3_2:85842292-85842311 Msa0433410:intron 25.0%
! AAACTTCATTTGTTCAACTA+TGG - chr3_2:85842436-85842455 Msa0433410:intron 25.0%
!!! CTAAGCAATTTTTTTTTGAG+GGG - chr3_2:85842511-85842530 Msa0433410:intron 25.0%
! CAAACTTCATTTATTCAAAC+TGG - chr3_2:85842609-85842628 Msa0433410:intron 25.0%
! AAACTTCATTTGTTCAACTA+TGG + chr3_2:85842436-85842455 None:intergenic 25.0%
!!! TTTTTTTCCTTCCTAAACTA+TGG - chr3_2:85843011-85843030 Msa0433410:CDS 25.0%
! AGTAAAAAAATCAGGAGAAA+AGG + chr3_2:85843061-85843080 None:intergenic 25.0%
! TGCATAGAATCAATTTTGTC+GGG + chr3_2:85840396-85840415 None:intergenic 30.0%
! GTGCATAGAATCAATTTTGT+CGG + chr3_2:85840397-85840416 None:intergenic 30.0%
TTGATTCTATGCACAAAGTA+AGG - chr3_2:85840403-85840422 Msa0433410:CDS 30.0%
CCTACATTGAACAGAAAATA+AGG + chr3_2:85840466-85840485 None:intergenic 30.0%
!!! CCTTATTTTCTGTTCAATGT+AGG - chr3_2:85840463-85840482 Msa0433410:CDS 30.0%
TAAGCAGTGAAGTAAAAACT+TGG - chr3_2:85840598-85840617 Msa0433410:intron 30.0%
!! GAAAAGTGCTAGAATTAAAC+TGG + chr3_2:85840673-85840692 None:intergenic 30.0%
!!! CAAACATGTGATTTTTAGTC+GGG - chr3_2:85840744-85840763 Msa0433410:intron 30.0%
TAGTTTACTGAGTGTTTAGT+TGG - chr3_2:85840786-85840805 Msa0433410:intron 30.0%
GGGTTGTTCTGATAAATATA+GGG + chr3_2:85841362-85841381 None:intergenic 30.0%
TAAATTCTAATTGACAGAGG+GGG + chr3_2:85841414-85841433 None:intergenic 30.0%
CTAAATTCTAATTGACAGAG+GGG + chr3_2:85841415-85841434 None:intergenic 30.0%
AACAGAAGCAAAAAAAAGCA+GGG + chr3_2:85841489-85841508 None:intergenic 30.0%
AAACAGAAGCAAAAAAAAGC+AGG + chr3_2:85841490-85841509 None:intergenic 30.0%
!!! TGCTTTTTTTTGCTTCTGTT+TGG - chr3_2:85841489-85841508 Msa0433410:intron 30.0%
!!! GCTTTTTTTTGCTTCTGTTT+GGG - chr3_2:85841490-85841509 Msa0433410:intron 30.0%
TTTGGGAGAAACAAAACATT+CGG - chr3_2:85841507-85841526 Msa0433410:intron 30.0%
! TAGGTCTTTTGTACTTTCTT+GGG - chr3_2:85841615-85841634 Msa0433410:intron 30.0%
! TTAGGTACTAGTTTGACATT+TGG - chr3_2:85841657-85841676 Msa0433410:intron 30.0%
!! AACTTTCAGGTTAAAGATCT+AGG + chr3_2:85841819-85841838 None:intergenic 30.0%
! GATCTTTAACCTGAAAGTTT+TGG - chr3_2:85841820-85841839 Msa0433410:intron 30.0%
TTACAGGTGATGAATATGAT+GGG + chr3_2:85841872-85841891 None:intergenic 30.0%
! GTTAGTTTGATAGCATTAGA+AGG - chr3_2:85842056-85842075 Msa0433410:intron 30.0%
ACCAAAACTCTCTTAAGTTT+AGG - chr3_2:85842168-85842187 Msa0433410:intron 30.0%
CCAAAACTCTCTTAAGTTTA+GGG - chr3_2:85842169-85842188 Msa0433410:intron 30.0%
GTCTATCAGTTAGTTAACAA+GGG - chr3_2:85842314-85842333 Msa0433410:intron 30.0%
AATTTGGTCTACGAATTAAC+TGG - chr3_2:85842763-85842782 Msa0433410:intron 30.0%
! ACGAAGATACAATTGACTTA+GGG + chr3_2:85842940-85842959 None:intergenic 30.0%
! TACGAAGATACAATTGACTT+AGG + chr3_2:85842941-85842960 None:intergenic 30.0%
ACAGAAATACCAATTGAAAG+AGG + chr3_2:85843109-85843128 None:intergenic 30.0%
TACACTGTATGAAGTATAAC+AGG - chr3_2:85843129-85843148 Msa0433410:CDS 30.0%
ACTAAACTTCGTTCTTGAGA+AGG + chr3_2:85840106-85840125 None:intergenic 35.0%
CTACAATAATCAATGGTGAC+AGG + chr3_2:85840372-85840391 None:intergenic 35.0%
! GCATAGAATCAATTTTGTCG+GGG + chr3_2:85840395-85840414 None:intergenic 35.0%
!! CGATTTGTTATCTAGTGTTG+TGG - chr3_2:85840564-85840583 Msa0433410:intron 35.0%
ACCCAAAACCTTAAGACATT+GGG - chr3_2:85840902-85840921 Msa0433410:intron 35.0%
! ACCCAATGTCTTAAGGTTTT+GGG + chr3_2:85840906-85840925 None:intergenic 35.0%
! AACCCAATGTCTTAAGGTTT+TGG + chr3_2:85840907-85840926 None:intergenic 35.0%
ACCTTAAGACATTGGGTTTA+TGG - chr3_2:85840909-85840928 Msa0433410:intron 35.0%
CCTTAAGACATTGGGTTTAT+GGG - chr3_2:85840910-85840929 Msa0433410:intron 35.0%
! GACAGTTTAAAGTTCCACAT+TGG - chr3_2:85841097-85841116 Msa0433410:intron 35.0%
! GTTTAAAGTTCCACATTGGA+TGG - chr3_2:85841101-85841120 Msa0433410:intron 35.0%
TTGAGCTACATATTAGAGAG+AGG - chr3_2:85841134-85841153 Msa0433410:intron 35.0%
TCCATAAATCCAATGCCTTA+AGG - chr3_2:85841158-85841177 Msa0433410:intron 35.0%
!! ACCTTAAGGCATTGGATTTA+TGG + chr3_2:85841162-85841181 None:intergenic 35.0%
! AATCCAATGCCTTAAGGTTT+TGG - chr3_2:85841164-85841183 Msa0433410:intron 35.0%
! ATCCAATGCCTTAAGGTTTT+GGG - chr3_2:85841165-85841184 Msa0433410:intron 35.0%
CATCTTAACCCAAAACCTTA+AGG + chr3_2:85841176-85841195 None:intergenic 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG - chr3_2:85841176-85841195 Msa0433410:intron 35.0%
GGGGTTGTTCTGATAAATAT+AGG + chr3_2:85841363-85841382 None:intergenic 35.0%
! GAAAGTACAAAAGACCTAGT+TGG + chr3_2:85841613-85841632 None:intergenic 35.0%
! CTAGGTCTTTTGTACTTTCT+TGG - chr3_2:85841614-85841633 Msa0433410:intron 35.0%
! CTTTTGTACTTTCTTGGGTA+TGG - chr3_2:85841620-85841639 Msa0433410:intron 35.0%
GTCAAACTAGTACCTAATCA+GGG + chr3_2:85841654-85841673 None:intergenic 35.0%
TGTCAAACTAGTACCTAATC+AGG + chr3_2:85841655-85841674 None:intergenic 35.0%
AGTATGCTATGGATGTCTTA+GGG + chr3_2:85841728-85841747 None:intergenic 35.0%
GTATTGAGATAGCTCAATCA+AGG + chr3_2:85841776-85841795 None:intergenic 35.0%
! GGTTGACTATGTTATTTGCT+TGG + chr3_2:85841798-85841817 None:intergenic 35.0%
ACATCTGATCCAAAACTTTC+AGG + chr3_2:85841832-85841851 None:intergenic 35.0%
! TGATGAATATGATGGGATAC+TGG + chr3_2:85841865-85841884 None:intergenic 35.0%
GTTACAGGTGATGAATATGA+TGG + chr3_2:85841873-85841892 None:intergenic 35.0%
TTGTTCAACAGTATGACATG+AGG + chr3_2:85841914-85841933 None:intergenic 35.0%
! TTGGTGACAAACAACTAGTA+CGG + chr3_2:85842153-85842172 None:intergenic 35.0%
! CCCTAAACTTAAGAGAGTTT+TGG + chr3_2:85842172-85842191 None:intergenic 35.0%
CTGATAGACCTTAGTTTATC+TGG + chr3_2:85842303-85842322 None:intergenic 35.0%
GGTCTATCAGTTAGTTAACA+AGG - chr3_2:85842313-85842332 Msa0433410:intron 35.0%
! ATTCAAACTGGTCATTGACT+TGG - chr3_2:85842621-85842640 Msa0433410:intron 35.0%
GGTTGCTGAACTTAAACTTT+AGG - chr3_2:85842784-85842803 Msa0433410:intron 35.0%
! TCAGACAAGTTTTTGATCTG+GGG + chr3_2:85842833-85842852 None:intergenic 35.0%
! CTCAGACAAGTTTTTGATCT+GGG + chr3_2:85842834-85842853 None:intergenic 35.0%
! TCTCAGACAAGTTTTTGATC+TGG + chr3_2:85842835-85842854 None:intergenic 35.0%
TGGGATCATTCATAAAGTGT+GGG - chr3_2:85842868-85842887 Msa0433410:intron 35.0%
! GATACAATTGACTTAGGGTA+AGG + chr3_2:85842935-85842954 None:intergenic 35.0%
! ATCTGAAACAGCCATAGTTT+AGG + chr3_2:85843025-85843044 None:intergenic 35.0%
!!! CTCCTGATTTTTTTACTGAC+TGG - chr3_2:85843064-85843083 Msa0433410:CDS 35.0%
TGAAGTATAACAGGAAGTTG+CGG - chr3_2:85843138-85843157 Msa0433410:CDS 35.0%
TTGTCCAAATACAGTAAGAC+TGG + chr3_2:85843242-85843261 None:intergenic 35.0%
!! GTTTAGTGTCACTTTACACG+CGG - chr3_2:85840119-85840138 Msa0433410:three_prime_UTR 40.0%
! GGGTTGACTCATTGAGTTAA+AGG + chr3_2:85840175-85840194 None:intergenic 40.0%
CTGTTCAATGTAGGCTTTCT+AGG - chr3_2:85840472-85840491 Msa0433410:CDS 40.0%
AATCGATCATGTCTATGCAC+TGG + chr3_2:85840549-85840568 None:intergenic 40.0%
!!! ATTTTTAGTCGGGTTTGCGT+TGG - chr3_2:85840754-85840773 Msa0433410:intron 40.0%
!! TTTTTAGTCGGGTTTGCGTT+GGG - chr3_2:85840755-85840774 Msa0433410:intron 40.0%
TACTGAGTGTTTAGTTGGTC+CGG - chr3_2:85840791-85840810 Msa0433410:intron 40.0%
GTAAGAACAACCACACAAGT+CGG - chr3_2:85840862-85840881 Msa0433410:intron 40.0%
CACCCAAAACCTTAAGACAT+TGG - chr3_2:85840901-85840920 Msa0433410:intron 40.0%
CCCATAAACCCAATGTCTTA+AGG + chr3_2:85840913-85840932 None:intergenic 40.0%
ATACCATTGTTGGGTCATGA+GGG + chr3_2:85840980-85840999 None:intergenic 40.0%
ATCAAAACATCTCTCCCTTG+AGG + chr3_2:85841068-85841087 None:intergenic 40.0%
AAAGTTCCACATTGGATGGA+AGG - chr3_2:85841105-85841124 Msa0433410:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG + chr3_2:85841170-85841189 None:intergenic 40.0%
GTACTTTCTTGGGTATGGAA+AGG - chr3_2:85841625-85841644 Msa0433410:intron 40.0%
GTATGCTATGGATGTCTTAG+GGG + chr3_2:85841727-85841746 None:intergenic 40.0%
GAGTATGCTATGGATGTCTT+AGG + chr3_2:85841729-85841748 None:intergenic 40.0%
CATCCATAGCATACTCTATG+CGG - chr3_2:85841733-85841752 Msa0433410:intron 40.0%
TTTCCGCATAGAGTATGCTA+TGG + chr3_2:85841739-85841758 None:intergenic 40.0%
GAGGATATCATTGTGGTTGT+GGG + chr3_2:85842007-85842026 None:intergenic 40.0%
TGAGGATATCATTGTGGTTG+TGG + chr3_2:85842008-85842027 None:intergenic 40.0%
!!! GTACACATTAGCTGGTTTTC+AGG + chr3_2:85842204-85842223 None:intergenic 40.0%
TGTGTGTGTGTGTAAACACT+TGG + chr3_2:85842242-85842261 None:intergenic 40.0%
AACTATGGCTCAATCGTAGT+TGG - chr3_2:85842451-85842470 Msa0433410:intron 40.0%
!! TGGACTAGTGAATTGCAAAC+TGG + chr3_2:85842655-85842674 None:intergenic 40.0%
AACTATGGCTCAATCGTAGT+TGG + chr3_2:85842451-85842470 None:intergenic 40.0%
TTAGGTCACACTTGAAGTGA+AGG - chr3_2:85842802-85842821 Msa0433410:intron 40.0%
TAGGTCACACTTGAAGTGAA+GGG - chr3_2:85842803-85842822 Msa0433410:intron 40.0%
GTGGGATCATTCATAAAGTG+TGG - chr3_2:85842867-85842886 Msa0433410:intron 40.0%
! AGGCAAGTAGGTATGTTTTC+AGG + chr3_2:85842902-85842921 None:intergenic 40.0%
!! TAGGGTAAGGTTTTGTAGCA+AGG + chr3_2:85842922-85842941 None:intergenic 40.0%
GAAACAGCCATAGTTTAGGA+AGG + chr3_2:85843021-85843040 None:intergenic 40.0%
GGCCAGTCAGTAAAAAAATC+AGG + chr3_2:85843069-85843088 None:intergenic 40.0%
ATTGAAAGAGGACCCACAAA+AGG + chr3_2:85843097-85843116 None:intergenic 40.0%
TTTGTGGGTCCTCTTTCAAT+TGG - chr3_2:85843097-85843116 Msa0433410:CDS 40.0%
TTAACATCCATCGTACGTTG+AGG - chr3_2:85843214-85843233 Msa0433410:CDS 40.0%
GGTTCCAGTCTTACTGTATT+TGG - chr3_2:85843235-85843254 Msa0433410:CDS 40.0%
TCTACGTGTCAGTCTGTCAA+TGG - chr3_2:85840029-85840048 Msa0433410:three_prime_UTR 45.0%
! ACTCGTCCGGTTTGAAAAAG+AGG + chr3_2:85840145-85840164 None:intergenic 45.0%
ATCAGTTGAAGTGGAGAGAG+TGG + chr3_2:85840214-85840233 None:intergenic 45.0%
! ACCACAACATCGACGTTTTC+CGG + chr3_2:85840240-85840259 None:intergenic 45.0%
!! AAGTATCGATCAGATCACGC+CGG + chr3_2:85840278-85840297 None:intergenic 45.0%
CTGATCGATACTTGGCCATT+AGG - chr3_2:85840285-85840304 Msa0433410:three_prime_UTR 45.0%
TGAGTAACCACACTGCCTAA+TGG + chr3_2:85840303-85840322 None:intergenic 45.0%
TTAGGCAGTGTGGTTACTCA+AGG - chr3_2:85840303-85840322 Msa0433410:three_prime_UTR 45.0%
GTCGGGGCTACAATAATCAA+TGG + chr3_2:85840379-85840398 None:intergenic 45.0%
ACTGGAGACATTTACTACCG+TGG + chr3_2:85840655-85840674 None:intergenic 45.0%
ACTGAGTGTTTAGTTGGTCC+GGG - chr3_2:85840792-85840811 Msa0433410:intron 45.0%
TTTAGTTGGTCCGGGATGTT+GGG - chr3_2:85840800-85840819 Msa0433410:intron 45.0%
TGTGATGATCGAACCTAGTG+AGG + chr3_2:85840838-85840857 None:intergenic 45.0%
!!! TAAGGTTTTGGGTGAAGACG+TGG + chr3_2:85840895-85840914 None:intergenic 45.0%
TACCATTGTTGGGTCATGAG+GGG + chr3_2:85840979-85840998 None:intergenic 45.0%
GATACCATTGTTGGGTCATG+AGG + chr3_2:85840981-85841000 None:intergenic 45.0%
TATCAGAGCCCGATTAGACT+TGG - chr3_2:85840997-85841016 Msa0433410:intron 45.0%
AATCCCCCACCAAGTCTAAT+CGG + chr3_2:85841009-85841028 None:intergenic 45.0%
!! ATTAGACTTGGTGGGGGATT+AGG - chr3_2:85841009-85841028 Msa0433410:intron 45.0%
! ACCTTGTTTGCTCACAGATG+CGG - chr3_2:85841038-85841057 Msa0433410:intron 45.0%
TGGTGTCCAACTCACTTGTT+TGG - chr3_2:85841196-85841215 Msa0433410:intron 45.0%
GAGCAACCAAACAAGTGAGT+TGG + chr3_2:85841205-85841224 None:intergenic 45.0%
! ACTGGATTGGATCGTCACAT+TGG + chr3_2:85841233-85841252 None:intergenic 45.0%
TGTGACGATCCAATCCAGTT+AGG - chr3_2:85841234-85841253 Msa0433410:intron 45.0%
AAGCACCTAGAGTCATGTGT+TGG + chr3_2:85841273-85841292 None:intergenic 45.0%
TCTAATTGACAGAGGGGGAA+GGG + chr3_2:85841409-85841428 None:intergenic 45.0%
TTCTAATTGACAGAGGGGGA+AGG + chr3_2:85841410-85841429 None:intergenic 45.0%
GTGCTGAAAAGCTTCCAACT+AGG - chr3_2:85841596-85841615 Msa0433410:intron 45.0%
ATGGAAAGGACTCCCTGATT+AGG - chr3_2:85841639-85841658 Msa0433410:intron 45.0%
ATGGATGTCTTAGGGGAAAC+TGG + chr3_2:85841720-85841739 None:intergenic 45.0%
! GCACTGATGTACACATTAGC+TGG + chr3_2:85842212-85842231 None:intergenic 45.0%
GCTAATGTGTACATCAGTGC+TGG - chr3_2:85842212-85842231 Msa0433410:intron 45.0%
!! ACTGGTCATTGACTTGGTGA+AGG - chr3_2:85842627-85842646 Msa0433410:intron 45.0%
TTGTCTGAGAAGCTGACATC+TGG - chr3_2:85842845-85842864 Msa0433410:intron 45.0%
!! GGTTTTGTAGCAAGGCAAGT+AGG + chr3_2:85842914-85842933 None:intergenic 45.0%
GAAGAGACGAAGCGTAGGAA+GGG + chr3_2:85840061-85840080 None:intergenic 50.0%
TGAAGAGACGAAGCGTAGGA+AGG + chr3_2:85840062-85840081 None:intergenic 50.0%
TTGAGAAGGCGAGGTACGAA+CGG + chr3_2:85840092-85840111 None:intergenic 50.0%
ACTTCGTTCTTGAGAAGGCG+AGG + chr3_2:85840101-85840120 None:intergenic 50.0%
!!! ACGCGGCCTCTTTTTCAAAC+CGG - chr3_2:85840136-85840155 Msa0433410:three_prime_UTR 50.0%
!! TAAAGGTGAGCTGACTCGTC+CGG + chr3_2:85840158-85840177 None:intergenic 50.0%
! AGTGGAGAGAGTGGTGGAAT+CGG + chr3_2:85840205-85840224 None:intergenic 50.0%
AGTTGAAGTGGAGAGAGTGG+TGG + chr3_2:85840211-85840230 None:intergenic 50.0%
!! CTCCACTTCAACTGATTCGC+CGG - chr3_2:85840218-85840237 Msa0433410:three_prime_UTR 50.0%
TTCCGGCGAATCAGTTGAAG+TGG + chr3_2:85840223-85840242 None:intergenic 50.0%
CGATGTTGTGGTCCAATACG+TGG - chr3_2:85840248-85840267 Msa0433410:three_prime_UTR 50.0%
GGCGTGATCTGATCGATACT+TGG - chr3_2:85840277-85840296 Msa0433410:three_prime_UTR 50.0%
TACTTGGCCATTAGGCAGTG+TGG - chr3_2:85840293-85840312 Msa0433410:three_prime_UTR 50.0%
GTCTTTGTTGGACCAAACCG+CGG + chr3_2:85840346-85840365 None:intergenic 50.0%
GGTGACAGGATCGTCTTTGT+TGG + chr3_2:85840358-85840377 None:intergenic 50.0%
GTTTAGTTGGTCCGGGATGT+TGG - chr3_2:85840799-85840818 Msa0433410:intron 50.0%
! TGCCTTATTGCCCAACATCC+CGG + chr3_2:85840813-85840832 None:intergenic 50.0%
GCAATAAGGCAAGCCTCACT+AGG - chr3_2:85840822-85840841 Msa0433410:intron 50.0%
GAACAACCACACAAGTCGGT+TGG - chr3_2:85840866-85840885 Msa0433410:intron 50.0%
GAGCAACCACACAAGTGAGT+CGG + chr3_2:85840937-85840956 None:intergenic 50.0%
CTCACTTGTGTGGTTGCTCT+TGG - chr3_2:85840938-85840957 Msa0433410:intron 50.0%
! CGGGCTCTGATACCATTGTT+GGG + chr3_2:85840989-85841008 None:intergenic 50.0%
! TCGGGCTCTGATACCATTGT+TGG + chr3_2:85840990-85841009 None:intergenic 50.0%
! AGAGCCCGATTAGACTTGGT+GGG - chr3_2:85841001-85841020 Msa0433410:intron 50.0%
ATCCCCCACCAAGTCTAATC+GGG + chr3_2:85841008-85841027 None:intergenic 50.0%
TCCGCATCTGTGAGCAAACA+AGG + chr3_2:85841042-85841061 None:intergenic 50.0%
CCTCAACCTTCCATCCAATG+TGG + chr3_2:85841114-85841133 None:intergenic 50.0%
CCACATTGGATGGAAGGTTG+AGG - chr3_2:85841111-85841130 Msa0433410:intron 50.0%
GATTGGGAGCCTAACTGGAT+TGG + chr3_2:85841246-85841265 None:intergenic 50.0%
TCCAGTTAGGCTCCCAATCA+CGG - chr3_2:85841247-85841266 Msa0433410:intron 50.0%
! GTCATGTGTTGGCCGTGATT+GGG + chr3_2:85841262-85841281 None:intergenic 50.0%
! AGTCATGTGTTGGCCGTGAT+TGG + chr3_2:85841263-85841282 None:intergenic 50.0%
AATCTCCCAAACCATGCTCG+AGG - chr3_2:85841942-85841961 Msa0433410:intron 50.0%
ATCTCCCAAACCATGCTCGA+GGG - chr3_2:85841943-85841962 Msa0433410:intron 50.0%
AGGGGTAGTTTGACCGTACA+GGG - chr3_2:85841962-85841981 Msa0433410:intron 50.0%
TAGTTTGACCGTACAGGGCA+GGG - chr3_2:85841967-85841986 Msa0433410:intron 50.0%
TCTGAGAAGCTGACATCTGG+TGG - chr3_2:85842848-85842867 Msa0433410:intron 50.0%
CTGAGAAGCTGACATCTGGT+GGG - chr3_2:85842849-85842868 Msa0433410:intron 50.0%
ACTGGAACCTCAACGTACGA+TGG + chr3_2:85843224-85843243 None:intergenic 50.0%
GGGTTGAAGAGACGAAGCGT+AGG + chr3_2:85840066-85840085 None:intergenic 55.0%
TGAGAAGGCGAGGTACGAAC+GGG + chr3_2:85840091-85840110 None:intergenic 55.0%
GCCGGAAAACGTCGATGTTG+TGG - chr3_2:85840236-85840255 Msa0433410:three_prime_UTR 55.0%
TGGTCCAATACGTGGTGCTC+CGG - chr3_2:85840256-85840275 Msa0433410:three_prime_UTR 55.0%
TTGCCACGCTTCTGTTTCCG+CGG - chr3_2:85840326-85840345 Msa0433410:three_prime_UTR 55.0%
AAACCGCGGAAACAGAAGCG+TGG + chr3_2:85840332-85840351 None:intergenic 55.0%
ACGCTTCTGTTTCCGCGGTT+TGG - chr3_2:85840331-85840350 Msa0433410:three_prime_UTR 55.0%
GTCCGGGATGTTGGGCAATA+AGG - chr3_2:85840808-85840827 Msa0433410:intron 55.0%
!! TGGTGTCCAACCGACTTGTG+TGG + chr3_2:85840875-85840894 None:intergenic 55.0%
ATGGGTCCGACTCACTTGTG+TGG - chr3_2:85840928-85840947 Msa0433410:intron 55.0%
CATGAGGGGAGTCTAGGCAT+TGG + chr3_2:85840965-85840984 None:intergenic 55.0%
TTGGGTCATGAGGGGAGTCT+AGG + chr3_2:85840971-85840990 None:intergenic 55.0%
CTCCCCTCATGACCCAACAA+TGG - chr3_2:85840974-85840993 Msa0433410:intron 55.0%
CAGAGCCCGATTAGACTTGG+TGG - chr3_2:85841000-85841019 Msa0433410:intron 55.0%
!! GAGCCCGATTAGACTTGGTG+GGG - chr3_2:85841002-85841021 Msa0433410:intron 55.0%
!! AGCCCGATTAGACTTGGTGG+GGG - chr3_2:85841003-85841022 Msa0433410:intron 55.0%
ACAGATGCGGAGAGCCTCAA+GGG - chr3_2:85841051-85841070 Msa0433410:intron 55.0%
CACGGCCAACACATGACTCT+AGG - chr3_2:85841265-85841284 Msa0433410:intron 55.0%
AGGGACTAAGGGAGAGAGTG+GGG + chr3_2:85841383-85841402 None:intergenic 55.0%
GAGGGACTAAGGGAGAGAGT+GGG + chr3_2:85841384-85841403 None:intergenic 55.0%
AATTGACAGAGGGGGAAGGG+AGG + chr3_2:85841406-85841425 None:intergenic 55.0%
TCTCCCAAACCATGCTCGAG+GGG - chr3_2:85841944-85841963 Msa0433410:intron 55.0%
CTACCCCTCGAGCATGGTTT+GGG + chr3_2:85841950-85841969 None:intergenic 55.0%
ACTACCCCTCGAGCATGGTT+TGG + chr3_2:85841951-85841970 None:intergenic 55.0%
GTCAAACTACCCCTCGAGCA+TGG + chr3_2:85841956-85841975 None:intergenic 55.0%
GAGGGGTAGTTTGACCGTAC+AGG - chr3_2:85841961-85841980 Msa0433410:intron 55.0%
GTAGTTTGACCGTACAGGGC+AGG - chr3_2:85841966-85841985 Msa0433410:intron 55.0%
GGTTGTGGGTATGTCTCTCG+AGG + chr3_2:85841993-85842012 None:intergenic 55.0%
! ACTGGCCCTCTGCCTTTTGT+GGG - chr3_2:85843082-85843101 Msa0433410:CDS 55.0%
GAGGACCCACAAAAGGCAGA+GGG + chr3_2:85843090-85843109 None:intergenic 55.0%
AGAGGACCCACAAAAGGCAG+AGG + chr3_2:85843091-85843110 None:intergenic 55.0%
AAGGCGAGGTACGAACGGGA+GGG + chr3_2:85840087-85840106 None:intergenic 60.0%
! AGTGGTGGAATCGGTGGAGG+CGG + chr3_2:85840196-85840215 None:intergenic 60.0%
! GAGAGTGGTGGAATCGGTGG+AGG + chr3_2:85840199-85840218 None:intergenic 60.0%
! GGAGAGAGTGGTGGAATCGG+TGG + chr3_2:85840202-85840221 None:intergenic 60.0%
CACAGATGCGGAGAGCCTCA+AGG - chr3_2:85841050-85841069 Msa0433410:intron 60.0%
GCCGTGATTGGGAGCCTAAC+TGG + chr3_2:85841251-85841270 None:intergenic 60.0%
GGGACTAAGGGAGAGAGTGG+GGG + chr3_2:85841382-85841401 None:intergenic 60.0%
GGAGGGACTAAGGGAGAGAG+TGG + chr3_2:85841385-85841404 None:intergenic 60.0%
GGGAAGGGAGGAGGGACTAA+GGG + chr3_2:85841394-85841413 None:intergenic 60.0%
!! GACTGGCCCTCTGCCTTTTG+TGG - chr3_2:85843081-85843100 Msa0433410:CDS 60.0%
AGGCGAGGTACGAACGGGAG+GGG + chr3_2:85840086-85840105 None:intergenic 65.0%
GAAGGCGAGGTACGAACGGG+AGG + chr3_2:85840088-85840107 None:intergenic 65.0%
! GTGGTGGAATCGGTGGAGGC+GGG + chr3_2:85840195-85840214 None:intergenic 65.0%
! CACGCCGGAGCACCACGTAT+TGG + chr3_2:85840263-85840282 None:intergenic 65.0%
GGGGAAGGGAGGAGGGACTA+AGG + chr3_2:85841395-85841414 None:intergenic 65.0%
GACAGAGGGGGAAGGGAGGA+GGG + chr3_2:85841402-85841421 None:intergenic 65.0%
TGACAGAGGGGGAAGGGAGG+AGG + chr3_2:85841403-85841422 None:intergenic 65.0%
TCTCGAGGCCCTGCCCTGTA+CGG + chr3_2:85841978-85841997 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85840021 85843350 85840021 ID=Msa0433410;Name=Msa0433410
chr3_2 mRNA 85840021 85843350 85840021 ID=Msa0433410-mRNA-1;Parent=Msa0433410;Name=Msa0433410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=27|1|1|1|1|1|2|362|184
chr3_2 exon 85840021 85840565 85840021 ID=Msa0433410-mRNA-1:exon:24712;Parent=Msa0433410-mRNA-1
chr3_2 exon 85842952 85843350 85842952 ID=Msa0433410-mRNA-1:exon:24711;Parent=Msa0433410-mRNA-1
chr3_2 five_prime_UTR 85843324 85843350 85843324 ID=Msa0433410-mRNA-1:five_prime_utr;Parent=Msa0433410-mRNA-1
chr3_2 CDS 85842952 85843323 85842952 ID=Msa0433410-mRNA-1:cds;Parent=Msa0433410-mRNA-1
chr3_2 CDS 85840383 85840565 85840383 ID=Msa0433410-mRNA-1:cds;Parent=Msa0433410-mRNA-1
chr3_2 three_prime_UTR 85840021 85840382 85840021 ID=Msa0433410-mRNA-1:three_prime_utr;Parent=Msa0433410-mRNA-1
Gene Sequence

>Msa0433410

ATGGCTTACACCCTTCCTACGCTTCGTCTCTTCAACCCCTCCCGTTCGTACCTCGCCTTCTCAAGAACGAAGTTTAGTGTCACTTTACACGCGGCCTCTTTTTCAAACCGGACGAGTCAGCTCACCTTTAACTCAATGAGTCAACCCGCCTCCACCGATTCCACCACTCTCTCCACTTCAACTGATTCGCCGGAAAACGTCGATGTTGTGGTCCAATACGTGGTGCTCCGGCGTGATCTGATCGATACTTGGCCATTAGGCAGTGTGGTTACTCAAGGTTGCCACGCTTCTGTTTCCGCGGTTTGGTCCAACAAAGACGATCCTGTCACCATTGATTATTGTAGCCCCGACAAAATTGATTCTATGCACAAAGTCACACTTGAAGTGAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTGACATCTGGTGGGATCATTCATAAAGTGTGGGTTGAGCAACCTGAAAACATACCTACTTGCCTTGCTACAAAACCTTACCCTAAGTCAATTGTATCTTCGTATTTTAAGAAGTTGAAACTCTGCAAGTGA

Protein sequence

>Msa0433410

MAYTLPTLRLFNPSRSYLAFSRTKFSVTLHAASFSNRTSQLTFNSMSQPASTDSTTLSTSTDSPENVDVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKDDPVTIDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTSGGIIHKVWVEQPENIPTCLATKPYPKSIVSSYFKKLKLCK*