Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649960 | AET02656.1 | 77.027 | 74 | 6 | 1 | 37 | 99 | 97 | 170 | 1.16e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649960 | sp|A4QLL3|PETG_LOBMA | 86.111 | 36 | 5 | 0 | 63 | 98 | 1 | 36 | 7.54e-15 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649960 | G7L7R5 | 77.027 | 74 | 6 | 1 | 37 | 99 | 97 | 170 | 5.52e-28 | 109 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094760 | Msa0649960 | 0.824869 | 6.389070e-54 | -8.615850e-47 |
| Msa0649960 | Msa1003060 | 0.816581 | 5.137779e-52 | -8.615850e-47 |
| Msa0649960 | Msa1009560 | 0.823771 | 1.157839e-53 | -8.615850e-47 |
| Msa0649960 | Msa1306260 | 0.819300 | 1.248487e-52 | -8.615850e-47 |
| Msa0649960 | Msa1405570 | 0.805532 | 1.275779e-49 | -8.615850e-47 |
| Msa0649960 | Msa1453720 | 0.804369 | 2.233338e-49 | -8.615850e-47 |
| Msa0520410 | Msa0649960 | 0.819799 | 9.605802e-53 | -8.615850e-47 |
| Msa0542240 | Msa0649960 | 0.817952 | 2.524331e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649960 | MtrunA17_Chr8g0355631 | 87.719 | 57 | 7 | 0 | 43 | 99 | 15 | 71 | 1.77e-31 | 105 |
| Msa0649960 | MtrunA17_Chr4g0015761 | 76.056 | 71 | 6 | 1 | 40 | 99 | 1 | 71 | 7.52e-31 | 103 |
| Msa0649960 | MtrunA17_CPg0492811 | 76.056 | 71 | 6 | 1 | 40 | 99 | 1 | 71 | 7.52e-31 | 103 |
| Msa0649960 | MtrunA17_Chr4g0016861 | 85.714 | 35 | 5 | 0 | 63 | 97 | 1 | 35 | 4.62e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649960 | ATCG00600.1 | 83.333 | 36 | 6 | 0 | 63 | 98 | 1 | 36 | 9.87e-15 | 62.8 |
Find 24 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGCCAATTCCTATTTA+AGG | 0.126954 | 4_3:+56684369 | Msa0649960:CDS |
| ATGATTGAAGTTTCTCTGTT+TGG | 0.294603 | 4_3:+56684434 | Msa0649960:CDS |
| GGTAATATCTATCCTTAAAT+AGG | 0.297194 | 4_3:-56684381 | None:intergenic |
| AATAATTCAGCCAAAGTAAT+AGG | 0.317142 | 4_3:-56684476 | None:intergenic |
| AAACTTCAATCATTTGAGTT+TGG | 0.328054 | 4_3:-56684424 | None:intergenic |
| TCTCTGTTTGGAATCATGTT+AGG | 0.339530 | 4_3:+56684446 | Msa0649960:CDS |
| ATCTATCCTTAAATAGGAAT+TGG | 0.360922 | 4_3:-56684375 | None:intergenic |
| ATTGTCCGATGGTCTGTTAT+TGG | 0.395692 | 4_3:-56683089 | None:intergenic |
| AGGTCTAGTTCCTATTACTT+TGG | 0.408917 | 4_3:+56684466 | Msa0649960:CDS |
| AATTGAATTAATTAGTCGTC+AGG | 0.436725 | 4_3:+56683857 | Msa0649960:intron |
| ATCATTTGAGTTTGGTTGAA+GGG | 0.457044 | 4_3:-56684416 | None:intergenic |
| CAATCGCAAAGCCTTGCATA+TGG | 0.463268 | 4_3:+56683130 | Msa0649960:CDS |
| AATTGGCAATTGACATGATA+AGG | 0.468100 | 4_3:-56684358 | None:intergenic |
| ATCGGACAATTCTACAGCCT+TGG | 0.468603 | 4_3:+56683102 | Msa0649960:CDS |
| AATCATTTGAGTTTGGTTGA+AGG | 0.519725 | 4_3:-56684417 | None:intergenic |
| CTCTCGTGCGTAACAAAACT+CGG | 0.544546 | 4_3:+56683159 | Msa0649960:CDS |
| TTTGGCTGAATTATTTGTAA+CGG | 0.545379 | 4_3:+56684484 | Msa0649960:CDS |
| GCTTTGCGATTGTGTTTCCA+AGG | 0.546273 | 4_3:-56683119 | None:intergenic |
| ATACCGACATGGTGATCAGT+TGG | 0.579917 | 4_3:+56684517 | Msa0649960:CDS |
| GAGAGTCTCATCCATATGCA+AGG | 0.633595 | 4_3:-56683141 | None:intergenic |
| GCATATTTACGATACCGACA+TGG | 0.642520 | 4_3:+56684506 | Msa0649960:CDS |
| TATCCAACTGATCACCATGT+CGG | 0.675750 | 4_3:-56684520 | None:intergenic |
| TTAGACCAATAACAGACCAT+CGG | 0.684604 | 4_3:+56683084 | Msa0649960:CDS |
| AAGGCTGTAGAATTGTCCGA+TGG | 0.694060 | 4_3:-56683100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTTAGTTACAT+AGG | - | chr4_3:56684026-56684045 | None:intergenic | 10.0% |
| !! | AAATAAAAATTTAGTTACAT+AGG | - | chr4_3:56684026-56684045 | None:intergenic | 10.0% |
| !!! | TTTACTAATCTTATCTTTTA+TGG | - | chr4_3:56683666-56683685 | None:intergenic | 15.0% |
| !!! | TCTATTTTTGAGATAAAAAT+AGG | - | chr4_3:56684126-56684145 | None:intergenic | 15.0% |
| !!! | TTTACTAATCTTATCTTTTA+TGG | - | chr4_3:56683666-56683685 | None:intergenic | 15.0% |
| !!! | TCTATTTTTGAGATAAAAAT+AGG | - | chr4_3:56684126-56684145 | None:intergenic | 15.0% |
| !!! | ACTCAATGATTTTAAACTAT+GGG | - | chr4_3:56683248-56683267 | None:intergenic | 20.0% |
| !!! | AACTCAATGATTTTAAACTA+TGG | - | chr4_3:56683249-56683268 | None:intergenic | 20.0% |
| !!! | ATTTTCATACCCAAAAAAAT+GGG | - | chr4_3:56683431-56683450 | None:intergenic | 20.0% |
| !! | AAAAATTTAGTTACATAGGT+AGG | - | chr4_3:56684022-56684041 | None:intergenic | 20.0% |
| !! | TATCTCAAAAATAGAAACTT+AGG | + | chr4_3:56684131-56684150 | Msa0649960:intron | 20.0% |
| !!! | TTATTAGTCTGAATAAGATA+TGG | + | chr4_3:56684271-56684290 | Msa0649960:intron | 20.0% |
| !!! | TTGAGATGAATTGTAAATTT+TGG | + | chr4_3:56684312-56684331 | Msa0649960:intron | 20.0% |
| !!! | ACTCAATGATTTTAAACTAT+GGG | - | chr4_3:56683248-56683267 | None:intergenic | 20.0% |
| !!! | AACTCAATGATTTTAAACTA+TGG | - | chr4_3:56683249-56683268 | None:intergenic | 20.0% |
| !!! | ATTTTCATACCCAAAAAAAT+GGG | - | chr4_3:56683431-56683450 | None:intergenic | 20.0% |
| !! | AAAAATTTAGTTACATAGGT+AGG | - | chr4_3:56684022-56684041 | None:intergenic | 20.0% |
| !! | TATCTCAAAAATAGAAACTT+AGG | + | chr4_3:56684131-56684150 | Msa0649960:intron | 20.0% |
| !!! | TTATTAGTCTGAATAAGATA+TGG | + | chr4_3:56684271-56684290 | Msa0649960:intron | 20.0% |
| !!! | TTGAGATGAATTGTAAATTT+TGG | + | chr4_3:56684312-56684331 | Msa0649960:intron | 20.0% |
| ! | TTCCAAAATATGATTGACAT+GGG | - | chr4_3:56683192-56683211 | None:intergenic | 25.0% |
| ! | TTTCCAAAATATGATTGACA+TGG | - | chr4_3:56683193-56683212 | None:intergenic | 25.0% |
| !! | AATGATTTTAAACTATGGGA+AGG | - | chr4_3:56683244-56683263 | None:intergenic | 25.0% |
| !!! | AAAATCATTGAGTTGAATGT+AGG | + | chr4_3:56683255-56683274 | Msa0649960:intron | 25.0% |
| !!! | ATTTGCTCATTGATTCATAT+GGG | - | chr4_3:56683336-56683355 | None:intergenic | 25.0% |
| !!! | AATTTGCTCATTGATTCATA+TGG | - | chr4_3:56683337-56683356 | None:intergenic | 25.0% |
| !! | CATTTTCATACCCAAAAAAA+TGG | - | chr4_3:56683432-56683451 | None:intergenic | 25.0% |
| ! | ACTGTATAAGAATATGTATG+TGG | - | chr4_3:56683627-56683646 | None:intergenic | 25.0% |
| ! | ACATATTCTTATACAGTCAA+AGG | + | chr4_3:56683630-56683649 | Msa0649960:intron | 25.0% |
| ! | CATATTCTTATACAGTCAAA+GGG | + | chr4_3:56683631-56683650 | Msa0649960:intron | 25.0% |
| ! | ATATTCTTATACAGTCAAAG+GGG | + | chr4_3:56683632-56683651 | Msa0649960:intron | 25.0% |
| ! | AATTGAATTAATTAGTCGTC+AGG | + | chr4_3:56683857-56683876 | Msa0649960:intron | 25.0% |
| !! | GATCAAAAAATCTGTTGATT+TGG | + | chr4_3:56683955-56683974 | Msa0649960:intron | 25.0% |
| ! | TTTCAATTGTATCTTTCAAG+TGG | + | chr4_3:56684083-56684102 | Msa0649960:intron | 25.0% |
| !!! | ATCTTTCAAGTGGTATTTTT+TGG | + | chr4_3:56684093-56684112 | Msa0649960:intron | 25.0% |
| ! | ATCTATCCTTAAATAGGAAT+TGG | - | chr4_3:56684378-56684397 | None:intergenic | 25.0% |
| ! | GGTAATATCTATCCTTAAAT+AGG | - | chr4_3:56684384-56684403 | None:intergenic | 25.0% |
| !! | AAACTTCAATCATTTGAGTT+TGG | - | chr4_3:56684427-56684446 | None:intergenic | 25.0% |
| ! | AATAATTCAGCCAAAGTAAT+AGG | - | chr4_3:56684479-56684498 | None:intergenic | 25.0% |
| ! | TTTGGCTGAATTATTTGTAA+CGG | + | chr4_3:56684484-56684503 | Msa0649960:CDS | 25.0% |
| ! | TTCCAAAATATGATTGACAT+GGG | - | chr4_3:56683192-56683211 | None:intergenic | 25.0% |
| ! | TTTCCAAAATATGATTGACA+TGG | - | chr4_3:56683193-56683212 | None:intergenic | 25.0% |
| !! | AATGATTTTAAACTATGGGA+AGG | - | chr4_3:56683244-56683263 | None:intergenic | 25.0% |
| !!! | AAAATCATTGAGTTGAATGT+AGG | + | chr4_3:56683255-56683274 | Msa0649960:intron | 25.0% |
| !!! | ATTTGCTCATTGATTCATAT+GGG | - | chr4_3:56683336-56683355 | None:intergenic | 25.0% |
| !!! | AATTTGCTCATTGATTCATA+TGG | - | chr4_3:56683337-56683356 | None:intergenic | 25.0% |
| !! | CATTTTCATACCCAAAAAAA+TGG | - | chr4_3:56683432-56683451 | None:intergenic | 25.0% |
| ! | ACTGTATAAGAATATGTATG+TGG | - | chr4_3:56683627-56683646 | None:intergenic | 25.0% |
| ! | ACATATTCTTATACAGTCAA+AGG | + | chr4_3:56683630-56683649 | Msa0649960:intron | 25.0% |
| ! | CATATTCTTATACAGTCAAA+GGG | + | chr4_3:56683631-56683650 | Msa0649960:intron | 25.0% |
| ! | ATATTCTTATACAGTCAAAG+GGG | + | chr4_3:56683632-56683651 | Msa0649960:intron | 25.0% |
| ! | AATTGAATTAATTAGTCGTC+AGG | + | chr4_3:56683857-56683876 | Msa0649960:intron | 25.0% |
| !! | GATCAAAAAATCTGTTGATT+TGG | + | chr4_3:56683955-56683974 | Msa0649960:intron | 25.0% |
| ! | TTTCAATTGTATCTTTCAAG+TGG | + | chr4_3:56684083-56684102 | Msa0649960:intron | 25.0% |
| !!! | ATCTTTCAAGTGGTATTTTT+TGG | + | chr4_3:56684093-56684112 | Msa0649960:intron | 25.0% |
| ! | ATCTATCCTTAAATAGGAAT+TGG | - | chr4_3:56684378-56684397 | None:intergenic | 25.0% |
| ! | GGTAATATCTATCCTTAAAT+AGG | - | chr4_3:56684384-56684403 | None:intergenic | 25.0% |
| !! | AAACTTCAATCATTTGAGTT+TGG | - | chr4_3:56684427-56684446 | None:intergenic | 25.0% |
| ! | AATAATTCAGCCAAAGTAAT+AGG | - | chr4_3:56684479-56684498 | None:intergenic | 25.0% |
| ! | TTTGGCTGAATTATTTGTAA+CGG | + | chr4_3:56684484-56684503 | Msa0649960:CDS | 25.0% |
| ! | AACCCATGTCAATCATATTT+TGG | + | chr4_3:56683187-56683206 | Msa0649960:intron | 30.0% |
| TGAATCAATGAGCAAATTGT+AGG | + | chr4_3:56683339-56683358 | Msa0649960:intron | 30.0% | |
| AAATTGTAGGTAATCAAGTC+AGG | + | chr4_3:56683352-56683371 | Msa0649960:intron | 30.0% | |
| TTGCTGAATGAAGAGTAATT+AGG | - | chr4_3:56683383-56683402 | None:intergenic | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | + | chr4_3:56683550-56683569 | Msa0649960:intron | 30.0% |
| TTATTACCAGTATTCGATAC+TGG | - | chr4_3:56683559-56683578 | None:intergenic | 30.0% | |
| TATTCTTATACAGTCAAAGG+GGG | + | chr4_3:56683633-56683652 | Msa0649960:intron | 30.0% | |
| TTAATTAGTCGTCAGGTAAA+AGG | + | chr4_3:56683864-56683883 | Msa0649960:intron | 30.0% | |
| !! | TTGATTTGGAATCACATGAT+GGG | + | chr4_3:56683969-56683988 | Msa0649960:intron | 30.0% |
| CCAAAATAACTCGTTATAGT+GGG | - | chr4_3:56684213-56684232 | None:intergenic | 30.0% | |
| ACCAAAATAACTCGTTATAG+TGG | - | chr4_3:56684214-56684233 | None:intergenic | 30.0% | |
| AATTGGCAATTGACATGATA+AGG | - | chr4_3:56684361-56684380 | None:intergenic | 30.0% | |
| CAATTGCCAATTCCTATTTA+AGG | + | chr4_3:56684369-56684388 | Msa0649960:CDS | 30.0% | |
| ! | ATCATTTGAGTTTGGTTGAA+GGG | - | chr4_3:56684419-56684438 | None:intergenic | 30.0% |
| ! | AATCATTTGAGTTTGGTTGA+AGG | - | chr4_3:56684420-56684439 | None:intergenic | 30.0% |
| ATGATTGAAGTTTCTCTGTT+TGG | + | chr4_3:56684434-56684453 | Msa0649960:CDS | 30.0% | |
| ! | AACCCATGTCAATCATATTT+TGG | + | chr4_3:56683187-56683206 | Msa0649960:intron | 30.0% |
| TGAATCAATGAGCAAATTGT+AGG | + | chr4_3:56683339-56683358 | Msa0649960:intron | 30.0% | |
| AAATTGTAGGTAATCAAGTC+AGG | + | chr4_3:56683352-56683371 | Msa0649960:intron | 30.0% | |
| TTGCTGAATGAAGAGTAATT+AGG | - | chr4_3:56683383-56683402 | None:intergenic | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | + | chr4_3:56683550-56683569 | Msa0649960:intron | 30.0% |
| TTATTACCAGTATTCGATAC+TGG | - | chr4_3:56683559-56683578 | None:intergenic | 30.0% | |
| TATTCTTATACAGTCAAAGG+GGG | + | chr4_3:56683633-56683652 | Msa0649960:intron | 30.0% | |
| TTAATTAGTCGTCAGGTAAA+AGG | + | chr4_3:56683864-56683883 | Msa0649960:intron | 30.0% | |
| !! | TTGATTTGGAATCACATGAT+GGG | + | chr4_3:56683969-56683988 | Msa0649960:intron | 30.0% |
| CCAAAATAACTCGTTATAGT+GGG | - | chr4_3:56684213-56684232 | None:intergenic | 30.0% | |
| ACCAAAATAACTCGTTATAG+TGG | - | chr4_3:56684214-56684233 | None:intergenic | 30.0% | |
| AATTGGCAATTGACATGATA+AGG | - | chr4_3:56684361-56684380 | None:intergenic | 30.0% | |
| CAATTGCCAATTCCTATTTA+AGG | + | chr4_3:56684369-56684388 | Msa0649960:CDS | 30.0% | |
| ! | ATCATTTGAGTTTGGTTGAA+GGG | - | chr4_3:56684419-56684438 | None:intergenic | 30.0% |
| ! | AATCATTTGAGTTTGGTTGA+AGG | - | chr4_3:56684420-56684439 | None:intergenic | 30.0% |
| ATGATTGAAGTTTCTCTGTT+TGG | + | chr4_3:56684434-56684453 | Msa0649960:CDS | 30.0% | |
| TTAGACCAATAACAGACCAT+CGG | + | chr4_3:56683084-56683103 | Msa0649960:CDS | 35.0% | |
| !!! | TCGGATCATCCCATTTTTTT+GGG | + | chr4_3:56683419-56683438 | Msa0649960:intron | 35.0% |
| TATATCCTCCCTATTCATTG+CGG | - | chr4_3:56683519-56683538 | None:intergenic | 35.0% | |
| AAGAATATGTATGTGGAGCT+AGG | - | chr4_3:56683620-56683639 | None:intergenic | 35.0% | |
| ATTCTTATACAGTCAAAGGG+GGG | + | chr4_3:56683634-56683653 | Msa0649960:intron | 35.0% | |
| ! | GATCGTCAATTTTGTACCAA+AGG | + | chr4_3:56683715-56683734 | Msa0649960:intron | 35.0% |
| ! | GAAGGATAGCTATACTGATT+CGG | - | chr4_3:56683756-56683775 | None:intergenic | 35.0% |
| TAGCTATCCTTCTTCTAACA+CGG | + | chr4_3:56683764-56683783 | Msa0649960:intron | 35.0% | |
| ! | AATTTTGCCGTGTTAGAAGA+AGG | - | chr4_3:56683774-56683793 | None:intergenic | 35.0% |
| CGGCAAAATTTCACAATCAA+TGG | + | chr4_3:56683784-56683803 | Msa0649960:intron | 35.0% | |
| !! | GTTGATTTGGAATCACATGA+TGG | + | chr4_3:56683968-56683987 | Msa0649960:intron | 35.0% |
| ! | CCCACTATAACGAGTTATTT+TGG | + | chr4_3:56684210-56684229 | Msa0649960:intron | 35.0% |
| !! | AGCAGTTTTAACAATAACCG+CGG | + | chr4_3:56684242-56684261 | Msa0649960:intron | 35.0% |
| GTTGAAGGGAAAAAAAAGTG+GGG | - | chr4_3:56684405-56684424 | None:intergenic | 35.0% | |
| GGTTGAAGGGAAAAAAAAGT+GGG | - | chr4_3:56684406-56684425 | None:intergenic | 35.0% | |
| TGGTTGAAGGGAAAAAAAAG+TGG | - | chr4_3:56684407-56684426 | None:intergenic | 35.0% | |
| ! | TCTCTGTTTGGAATCATGTT+AGG | + | chr4_3:56684446-56684465 | Msa0649960:CDS | 35.0% |
| ! | AGGTCTAGTTCCTATTACTT+TGG | + | chr4_3:56684466-56684485 | Msa0649960:CDS | 35.0% |
| TTAGACCAATAACAGACCAT+CGG | + | chr4_3:56683084-56683103 | Msa0649960:CDS | 35.0% | |
| !!! | TCGGATCATCCCATTTTTTT+GGG | + | chr4_3:56683419-56683438 | Msa0649960:intron | 35.0% |
| TATATCCTCCCTATTCATTG+CGG | - | chr4_3:56683519-56683538 | None:intergenic | 35.0% | |
| AAGAATATGTATGTGGAGCT+AGG | - | chr4_3:56683620-56683639 | None:intergenic | 35.0% | |
| ATTCTTATACAGTCAAAGGG+GGG | + | chr4_3:56683634-56683653 | Msa0649960:intron | 35.0% | |
| ! | GATCGTCAATTTTGTACCAA+AGG | + | chr4_3:56683715-56683734 | Msa0649960:intron | 35.0% |
| ! | GAAGGATAGCTATACTGATT+CGG | - | chr4_3:56683756-56683775 | None:intergenic | 35.0% |
| TAGCTATCCTTCTTCTAACA+CGG | + | chr4_3:56683764-56683783 | Msa0649960:intron | 35.0% | |
| ! | AATTTTGCCGTGTTAGAAGA+AGG | - | chr4_3:56683774-56683793 | None:intergenic | 35.0% |
| CGGCAAAATTTCACAATCAA+TGG | + | chr4_3:56683784-56683803 | Msa0649960:intron | 35.0% | |
| !! | GTTGATTTGGAATCACATGA+TGG | + | chr4_3:56683968-56683987 | Msa0649960:intron | 35.0% |
| ! | CCCACTATAACGAGTTATTT+TGG | + | chr4_3:56684210-56684229 | Msa0649960:intron | 35.0% |
| !! | AGCAGTTTTAACAATAACCG+CGG | + | chr4_3:56684242-56684261 | Msa0649960:intron | 35.0% |
| GTTGAAGGGAAAAAAAAGTG+GGG | - | chr4_3:56684405-56684424 | None:intergenic | 35.0% | |
| GGTTGAAGGGAAAAAAAAGT+GGG | - | chr4_3:56684406-56684425 | None:intergenic | 35.0% | |
| TGGTTGAAGGGAAAAAAAAG+TGG | - | chr4_3:56684407-56684426 | None:intergenic | 35.0% | |
| ! | TCTCTGTTTGGAATCATGTT+AGG | + | chr4_3:56684446-56684465 | Msa0649960:CDS | 35.0% |
| ! | AGGTCTAGTTCCTATTACTT+TGG | + | chr4_3:56684466-56684485 | Msa0649960:CDS | 35.0% |
| ATTGTCCGATGGTCTGTTAT+TGG | - | chr4_3:56683092-56683111 | None:intergenic | 40.0% | |
| TTTAAACTATGGGAAGGAGC+AGG | - | chr4_3:56683238-56683257 | None:intergenic | 40.0% | |
| !!! | CTCGGATCATCCCATTTTTT+TGG | + | chr4_3:56683418-56683437 | Msa0649960:intron | 40.0% |
| ATAACCAACCCGCAATGAAT+AGG | + | chr4_3:56683507-56683526 | Msa0649960:intron | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | + | chr4_3:56683508-56683527 | Msa0649960:intron | 40.0% | |
| ATATCCTCCCTATTCATTGC+GGG | - | chr4_3:56683518-56683537 | None:intergenic | 40.0% | |
| GTATACTCGAAAGAGACCTT+TGG | - | chr4_3:56683734-56683753 | None:intergenic | 40.0% | |
| ! | ATTTGGAATCACATGATGGG+TGG | + | chr4_3:56683972-56683991 | Msa0649960:intron | 40.0% |
| !! | AACTCGTTATAGTGGGCATA+AGG | - | chr4_3:56684206-56684225 | None:intergenic | 40.0% |
| !! | GCAGTTTTAACAATAACCGC+GGG | + | chr4_3:56684243-56684262 | Msa0649960:intron | 40.0% |
| CAGACTAATAAAAAGACCCG+CGG | - | chr4_3:56684262-56684281 | None:intergenic | 40.0% | |
| GCATATTTACGATACCGACA+TGG | + | chr4_3:56684506-56684525 | Msa0649960:CDS | 40.0% | |
| TATCCAACTGATCACCATGT+CGG | - | chr4_3:56684523-56684542 | None:intergenic | 40.0% | |
| ATTGTCCGATGGTCTGTTAT+TGG | - | chr4_3:56683092-56683111 | None:intergenic | 40.0% | |
| TTTAAACTATGGGAAGGAGC+AGG | - | chr4_3:56683238-56683257 | None:intergenic | 40.0% | |
| !!! | CTCGGATCATCCCATTTTTT+TGG | + | chr4_3:56683418-56683437 | Msa0649960:intron | 40.0% |
| ATAACCAACCCGCAATGAAT+AGG | + | chr4_3:56683507-56683526 | Msa0649960:intron | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | + | chr4_3:56683508-56683527 | Msa0649960:intron | 40.0% | |
| ATATCCTCCCTATTCATTGC+GGG | - | chr4_3:56683518-56683537 | None:intergenic | 40.0% | |
| GTATACTCGAAAGAGACCTT+TGG | - | chr4_3:56683734-56683753 | None:intergenic | 40.0% | |
| ! | ATTTGGAATCACATGATGGG+TGG | + | chr4_3:56683972-56683991 | Msa0649960:intron | 40.0% |
| !! | AACTCGTTATAGTGGGCATA+AGG | - | chr4_3:56684206-56684225 | None:intergenic | 40.0% |
| !! | GCAGTTTTAACAATAACCGC+GGG | + | chr4_3:56684243-56684262 | Msa0649960:intron | 40.0% |
| CAGACTAATAAAAAGACCCG+CGG | - | chr4_3:56684262-56684281 | None:intergenic | 40.0% | |
| GCATATTTACGATACCGACA+TGG | + | chr4_3:56684506-56684525 | Msa0649960:CDS | 40.0% | |
| TATCCAACTGATCACCATGT+CGG | - | chr4_3:56684523-56684542 | None:intergenic | 40.0% | |
| AAGGCTGTAGAATTGTCCGA+TGG | - | chr4_3:56683103-56683122 | None:intergenic | 45.0% | |
| ATCGGACAATTCTACAGCCT+TGG | + | chr4_3:56683102-56683121 | Msa0649960:CDS | 45.0% | |
| GCTTTGCGATTGTGTTTCCA+AGG | - | chr4_3:56683122-56683141 | None:intergenic | 45.0% | |
| CAATCGCAAAGCCTTGCATA+TGG | + | chr4_3:56683130-56683149 | Msa0649960:CDS | 45.0% | |
| GAGAGTCTCATCCATATGCA+AGG | - | chr4_3:56683144-56683163 | None:intergenic | 45.0% | |
| CTCTCGTGCGTAACAAAACT+CGG | + | chr4_3:56683159-56683178 | Msa0649960:CDS | 45.0% | |
| GAGTTGAATGTAGGCAGTGT+TGG | + | chr4_3:56683264-56683283 | Msa0649960:intron | 45.0% | |
| !!! | AGGCAGTGTTGGCTTTTCTT+TGG | + | chr4_3:56683275-56683294 | Msa0649960:intron | 45.0% |
| !! | CAAGCGTTGATTCCATCTCT+CGG | + | chr4_3:56683400-56683419 | Msa0649960:intron | 45.0% |
| AAATGGGATGATCCGAGAGA+TGG | - | chr4_3:56683415-56683434 | None:intergenic | 45.0% | |
| ATACCGACATGGTGATCAGT+TGG | + | chr4_3:56684517-56684536 | Msa0649960:CDS | 45.0% | |
| AAGGCTGTAGAATTGTCCGA+TGG | - | chr4_3:56683103-56683122 | None:intergenic | 45.0% | |
| ATCGGACAATTCTACAGCCT+TGG | + | chr4_3:56683102-56683121 | Msa0649960:CDS | 45.0% | |
| GCTTTGCGATTGTGTTTCCA+AGG | - | chr4_3:56683122-56683141 | None:intergenic | 45.0% | |
| CAATCGCAAAGCCTTGCATA+TGG | + | chr4_3:56683130-56683149 | Msa0649960:CDS | 45.0% | |
| GAGAGTCTCATCCATATGCA+AGG | - | chr4_3:56683144-56683163 | None:intergenic | 45.0% | |
| CTCTCGTGCGTAACAAAACT+CGG | + | chr4_3:56683159-56683178 | Msa0649960:CDS | 45.0% | |
| GAGTTGAATGTAGGCAGTGT+TGG | + | chr4_3:56683264-56683283 | Msa0649960:intron | 45.0% | |
| !!! | AGGCAGTGTTGGCTTTTCTT+TGG | + | chr4_3:56683275-56683294 | Msa0649960:intron | 45.0% |
| !! | CAAGCGTTGATTCCATCTCT+CGG | + | chr4_3:56683400-56683419 | Msa0649960:intron | 45.0% |
| AAATGGGATGATCCGAGAGA+TGG | - | chr4_3:56683415-56683434 | None:intergenic | 45.0% | |
| ATACCGACATGGTGATCAGT+TGG | + | chr4_3:56684517-56684536 | Msa0649960:CDS | 45.0% | |
| CTATGGGAAGGAGCAGGTAA+AGG | - | chr4_3:56683232-56683251 | None:intergenic | 50.0% | |
| TATGTGGAGCTAGGCATGTC+TGG | - | chr4_3:56683611-56683630 | None:intergenic | 50.0% | |
| CTATGGGAAGGAGCAGGTAA+AGG | - | chr4_3:56683232-56683251 | None:intergenic | 50.0% | |
| TATGTGGAGCTAGGCATGTC+TGG | - | chr4_3:56683611-56683630 | None:intergenic | 50.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | - | chr4_3:56683514-56683533 | None:intergenic | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | + | chr4_3:56683511-56683530 | Msa0649960:intron | 55.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | - | chr4_3:56683514-56683533 | None:intergenic | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | + | chr4_3:56683511-56683530 | Msa0649960:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56683080 | 56684547 | 56683080 | ID=Msa0649960;Name=Msa0649960 |
| chr4_3 | mRNA | 56683080 | 56684547 | 56683080 | ID=Msa0649960-mRNA-1;Parent=Msa0649960;Name=Msa0649960-mRNA-1;_AED=0.67;_eAED=0.67;_QI=0|0|0|0.33|1|1|3|0|99 |
| chr4_3 | exon | 56683080 | 56683180 | 56683080 | ID=Msa0649960-mRNA-1:exon:14810;Parent=Msa0649960-mRNA-1 |
| chr4_3 | exon | 56683872 | 56683878 | 56683872 | ID=Msa0649960-mRNA-1:exon:14811;Parent=Msa0649960-mRNA-1 |
| chr4_3 | exon | 56684356 | 56684547 | 56684356 | ID=Msa0649960-mRNA-1:exon:14812;Parent=Msa0649960-mRNA-1 |
| chr4_3 | CDS | 56683080 | 56683180 | 56683080 | ID=Msa0649960-mRNA-1:cds;Parent=Msa0649960-mRNA-1 |
| chr4_3 | CDS | 56683872 | 56683878 | 56683872 | ID=Msa0649960-mRNA-1:cds;Parent=Msa0649960-mRNA-1 |
| chr4_3 | CDS | 56684356 | 56684547 | 56684356 | ID=Msa0649960-mRNA-1:cds;Parent=Msa0649960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
