Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542240 | XP_024641477.2 | 44.503 | 191 | 85 | 6 | 378 | 568 | 932 | 1101 | 2.60e-23 | 117 |
| Msa0542240 | XP_024641477.2 | 80.368 | 163 | 32 | 0 | 216 | 378 | 684 | 846 | 5.25e-88 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542240 | A0A396HCB5 | 44.503 | 191 | 85 | 6 | 378 | 568 | 932 | 1101 | 1.24e-23 | 117 |
| Msa0542240 | A0A396HCB5 | 80.368 | 163 | 32 | 0 | 216 | 378 | 684 | 846 | 2.51e-88 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0542240 | 0.826580 | 2.509485e-54 | -8.615850e-47 |
| Msa0087010 | Msa0542240 | 0.822977 | 1.774476e-53 | -8.615850e-47 |
| Msa0094760 | Msa0542240 | 0.938362 | 7.624680e-99 | -8.615850e-47 |
| Msa0157210 | Msa0542240 | 0.815465 | 9.119586e-52 | -8.615850e-47 |
| Msa0520410 | Msa0542240 | 0.868697 | 5.385984e-66 | -8.615850e-47 |
| Msa0542240 | Msa0606960 | 0.818968 | 1.485874e-52 | -8.615850e-47 |
| Msa0542240 | Msa0649960 | 0.817952 | 2.524331e-52 | -8.615850e-47 |
| Msa0542240 | Msa0655670 | 0.845425 | 4.093822e-59 | -8.615850e-47 |
| Msa0542240 | Msa1003060 | 0.942561 | 5.782471e-102 | -8.615850e-47 |
| Msa0542240 | Msa1009560 | 0.869083 | 4.037394e-66 | -8.615850e-47 |
| Msa0542240 | Msa1306260 | 0.871699 | 5.601502e-67 | -8.615850e-47 |
| Msa0542240 | Msa1405570 | 0.867950 | 9.378269e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542240 | MtrunA17_Chr6g0462901 | 80.368 | 163 | 32 | 0 | 216 | 378 | 684 | 846 | 4.83e-92 | 306 |
| Msa0542240 | MtrunA17_Chr6g0462901 | 44.503 | 191 | 85 | 6 | 378 | 568 | 932 | 1101 | 2.39e-27 | 117 |
| Msa0542240 | MtrunA17_Chr6g0462901 | 36.932 | 176 | 50 | 8 | 25 | 194 | 148 | 268 | 1.54e-15 | 80.5 |
| Msa0542240 | MtrunA17_Chr3g0081981 | 70.552 | 163 | 47 | 1 | 216 | 378 | 241 | 402 | 4.18e-76 | 255 |
| Msa0542240 | MtrunA17_Chr3g0081981 | 50.345 | 145 | 62 | 4 | 378 | 518 | 488 | 626 | 1.79e-23 | 105 |
| Msa0542240 | MtrunA17_Chr6g0455001 | 61.585 | 164 | 63 | 0 | 216 | 379 | 90 | 253 | 4.61e-69 | 229 |
| Msa0542240 | MtrunA17_Chr2g0281381 | 68.098 | 163 | 51 | 1 | 216 | 378 | 640 | 801 | 2.21e-68 | 239 |
| Msa0542240 | MtrunA17_Chr2g0281381 | 70.492 | 61 | 17 | 1 | 378 | 438 | 890 | 949 | 3.59e-18 | 89.0 |
| Msa0542240 | MtrunA17_Chr8g0362211 | 58.333 | 156 | 33 | 2 | 25 | 180 | 152 | 275 | 8.32e-44 | 157 |
| Msa0542240 | MtrunA17_Chr6g0477881 | 38.509 | 161 | 97 | 2 | 216 | 375 | 597 | 756 | 2.06e-32 | 133 |
| Msa0542240 | MtrunA17_Chr6g0477921 | 38.509 | 161 | 97 | 2 | 216 | 375 | 597 | 756 | 2.21e-32 | 133 |
| Msa0542240 | MtrunA17_Chr8g0373261 | 38.750 | 160 | 97 | 1 | 216 | 375 | 583 | 741 | 1.19e-30 | 127 |
| Msa0542240 | MtrunA17_Chr3g0083771 | 76.316 | 76 | 14 | 2 | 414 | 487 | 1 | 74 | 3.72e-26 | 101 |
| Msa0542240 | MtrunA17_Chr1g0190521 | 29.375 | 160 | 107 | 3 | 216 | 371 | 461 | 618 | 8.91e-16 | 80.9 |
| Msa0542240 | MtrunA17_Chr5g0404701 | 35.514 | 107 | 68 | 1 | 269 | 375 | 6 | 111 | 1.48e-15 | 75.5 |
| Msa0542240 | MtrunA17_Chr8g0338951 | 34.848 | 132 | 81 | 3 | 255 | 382 | 1 | 131 | 1.72e-14 | 74.7 |
| Msa0542240 | MtrunA17_Chr1g0190511 | 30.201 | 149 | 102 | 2 | 217 | 365 | 357 | 503 | 2.04e-14 | 76.6 |
| Msa0542240 | MtrunA17_Chr2g0303271 | 39.053 | 169 | 42 | 9 | 19 | 183 | 125 | 236 | 3.30e-13 | 70.5 |
| Msa0542240 | MtrunA17_Chr4g0049281 | 33.613 | 119 | 77 | 2 | 216 | 334 | 273 | 389 | 2.25e-12 | 69.7 |
| Msa0542240 | MtrunA17_Chr2g0297981 | 53.968 | 63 | 21 | 3 | 19 | 78 | 128 | 185 | 6.76e-11 | 61.6 |
| Msa0542240 | MtrunA17_Chr5g0421581 | 42.857 | 105 | 42 | 4 | 25 | 116 | 131 | 230 | 9.56e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 153 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGCTTCTTCTTGATATT+TGG | 0.184548 | 4_1:+26337341 | None:intergenic |
| CCTGGCTTTGCAGATTGTTT+TGG | 0.231455 | 4_1:+26336297 | None:intergenic |
| AATCACAATGACAGAGTTAA+AGG | 0.247572 | 4_1:+26337475 | None:intergenic |
| TGAGTTTGAGTCTCTGATTC+AGG | 0.252292 | 4_1:+26336654 | None:intergenic |
| TTTGGCTTTGACTTTGGGTT+AGG | 0.284690 | 4_1:-26339291 | Msa0542240:CDS |
| GAATCAAGCTTCTCAGGTTC+AGG | 0.295741 | 4_1:-26336541 | Msa0542240:CDS |
| AATGACTTTGGCTTTGACTT+TGG | 0.300051 | 4_1:-26339297 | Msa0542240:CDS |
| GAGCCAAGCTTCTCAGGTTC+AGG | 0.300209 | 4_1:-26336496 | Msa0542240:CDS |
| AGTGCCTTTGGTGTAGATTT+TGG | 0.308847 | 4_1:-26339231 | Msa0542240:CDS |
| AAAGGATATGAAGGAAATTA+AGG | 0.311243 | 4_1:-26337612 | Msa0542240:CDS |
| TTTCCATGATGGAGGATATA+AGG | 0.317413 | 4_1:-26337433 | Msa0542240:CDS |
| ATGACTTTGGCTTTGACTTT+GGG | 0.328457 | 4_1:-26339296 | Msa0542240:CDS |
| TTCTTTCTCCTCTTGTCTCC+TGG | 0.329051 | 4_1:+26336279 | None:intergenic |
| AGAGAAAACGCTGCTGCATC+TGG | 0.338545 | 4_1:-26340518 | Msa0542240:CDS |
| GACAGTGAGGTAGGTGGAAT+TGG | 0.351602 | 4_1:-26339171 | Msa0542240:CDS |
| ACTGTGAATGTGGGTGAGCC+TGG | 0.352244 | 4_1:-26339333 | Msa0542240:CDS |
| AATCATCTTATACAAATAAC+TGG | 0.356241 | 4_1:-26337313 | Msa0542240:CDS |
| AATTCATTCTCATCAATCAT+TGG | 0.356643 | 4_1:+26339516 | None:intergenic |
| GGAGGTGGAGGTGGAGGTGC+AGG | 0.367473 | 4_1:+26336675 | None:intergenic |
| TATGATAATGGGCCTGGATT+AGG | 0.369826 | 4_1:-26339483 | Msa0542240:CDS |
| TGGACTAGGTCAATGTTTAA+AGG | 0.371517 | 4_1:-26337539 | Msa0542240:CDS |
| CTAGCCCTTATCTTCTTAGT+TGG | 0.386193 | 4_1:+26336342 | None:intergenic |
| AGCATTTCTGTATGTAGCTT+TGG | 0.388479 | 4_1:+26337640 | None:intergenic |
| GAAACAACTGGCTTGGACCT+TGG | 0.399081 | 4_1:+26337452 | None:intergenic |
| TAATCAGAGCCAAGCTTCTC+AGG | 0.400512 | 4_1:-26336502 | Msa0542240:CDS |
| AATGCTGATGGTGGTGTAAC+TGG | 0.400907 | 4_1:-26339603 | Msa0542240:CDS |
| TGCTCAGAATCAAGCTTCTC+AGG | 0.401951 | 4_1:-26336547 | Msa0542240:CDS |
| ACAGTTTCCTTCTCTAGCTC+AGG | 0.407647 | 4_1:+26339417 | None:intergenic |
| TTGGCTTTGACTTTGGGTTA+GGG | 0.414490 | 4_1:-26339290 | Msa0542240:CDS |
| GGAGGTGGAGGTGCAGGCAG+TGG | 0.416374 | 4_1:+26336681 | None:intergenic |
| CTGAGATACCTGTGGCTGAC+TGG | 0.423610 | 4_1:+26336593 | None:intergenic |
| GAGGTGGAGGTGCAGGCAGT+GGG | 0.425991 | 4_1:+26336682 | None:intergenic |
| GAAGCAGAGGTGGGAATAGC+AGG | 0.429073 | 4_1:-26339201 | Msa0542240:CDS |
| TGCAGAGGTGGGAGAAGAAT+AGG | 0.434665 | 4_1:-26337400 | Msa0542240:CDS |
| ATGCTCCAACTAAGAAGATA+AGG | 0.434883 | 4_1:-26336347 | Msa0542240:CDS |
| ATTCATTCTCATCAATCATT+GGG | 0.439176 | 4_1:+26339517 | None:intergenic |
| CTAGGGAATGAAAATGACTT+TGG | 0.439593 | 4_1:-26339309 | Msa0542240:CDS |
| AGGTCCCACTGCTGAGGGTG+AGG | 0.448663 | 4_1:-26339631 | Msa0542240:CDS |
| GATTCAGGAGGTGGAGGTGG+AGG | 0.454760 | 4_1:+26336669 | None:intergenic |
| TTGGTTGGTGAGTATGATAA+TGG | 0.458161 | 4_1:-26339495 | Msa0542240:CDS |
| AACTAGGAAGAGAAAGGTTA+AGG | 0.459717 | 4_1:-26336421 | Msa0542240:CDS |
| AATGATTGATGAGAATGAAT+TGG | 0.461256 | 4_1:-26339514 | Msa0542240:CDS |
| ATACAAATAACTGGATAGTA+AGG | 0.464369 | 4_1:-26337304 | Msa0542240:intron |
| AGGGAATGAAAATGAGGATC+TGG | 0.464724 | 4_1:-26339271 | Msa0542240:CDS |
| TCCTCCATCATGGAAACAAC+TGG | 0.468536 | 4_1:+26337440 | None:intergenic |
| ATACAGAAATGCTTGGGAAA+AGG | 0.471617 | 4_1:-26337630 | Msa0542240:CDS |
| AGCTACATACAGAAATGCTT+GGG | 0.475989 | 4_1:-26337636 | Msa0542240:CDS |
| AGGAGACAAGAGGAGAAAGA+AGG | 0.477177 | 4_1:-26336277 | Msa0542240:CDS |
| AATGTGGGTGAGCCTGGGCT+AGG | 0.477801 | 4_1:-26339327 | Msa0542240:CDS |
| TGCTCCAACTAAGAAGATAA+GGG | 0.478396 | 4_1:-26336346 | Msa0542240:CDS |
| TAAATTGCCTAATACTACAT+TGG | 0.482378 | 4_1:+26336237 | None:intergenic |
| TCTGATTCAGGAGGTGGAGG+TGG | 0.482726 | 4_1:+26336666 | None:intergenic |
| ACATTCACAGTTTCTTCCAC+TGG | 0.487456 | 4_1:+26339378 | None:intergenic |
| CATCATGGAAACAACTGGCT+TGG | 0.487845 | 4_1:+26337445 | None:intergenic |
| TGGATCTATTTCACACAGAT+AGG | 0.490360 | 4_1:+26337568 | None:intergenic |
| AGTGAGCTTCTCAGAGATAG+TGG | 0.491169 | 4_1:-26336777 | Msa0542240:CDS |
| ACTTGTGCTTGAGGCTGAGA+TGG | 0.493176 | 4_1:+26336627 | None:intergenic |
| GTCTCTGATTCAGGAGGTGG+AGG | 0.493494 | 4_1:+26336663 | None:intergenic |
| GGTGAGTATGATAATGGGCC+TGG | 0.496335 | 4_1:-26339489 | Msa0542240:CDS |
| CAAATGAAGAGAGCATCATA+TGG | 0.498588 | 4_1:-26336753 | Msa0542240:CDS |
| TGCTTGGGAAAAGGATATGA+AGG | 0.500200 | 4_1:-26337621 | Msa0542240:CDS |
| GAAGTTTGTGACTGAGTAGC+TGG | 0.500286 | 4_1:+26336396 | None:intergenic |
| GAGAAGGAAGACAGTGCCTT+TGG | 0.502273 | 4_1:-26339243 | Msa0542240:CDS |
| TGAGTCTCTGATTCAGGAGG+TGG | 0.503198 | 4_1:+26336660 | None:intergenic |
| CAAAACCTCTGCTCAACCTC+AGG | 0.504401 | 4_1:+26337737 | None:intergenic |
| GATGAGACACAGACTGAAGT+TGG | 0.504679 | 4_1:-26339456 | Msa0542240:CDS |
| GTCTCATCATCTCCTAATCC+AGG | 0.506310 | 4_1:+26339471 | None:intergenic |
| CAAGCCAGTTGTTTCCATGA+TGG | 0.506531 | 4_1:-26337444 | Msa0542240:CDS |
| TATCAAGAAGAAGCTAGAAA+AGG | 0.512265 | 4_1:-26337336 | Msa0542240:CDS |
| AAGCTACATACAGAAATGCT+TGG | 0.513838 | 4_1:-26337637 | Msa0542240:CDS |
| AAAATTACAAGGTTTGATGA+TGG | 0.513906 | 4_1:-26337374 | Msa0542240:CDS |
| GGAGACAAGAGGAGAAAGAA+GGG | 0.515327 | 4_1:-26336276 | Msa0542240:CDS |
| ACATTCACAGTTTCCTCCAC+TGG | 0.519050 | 4_1:+26339345 | None:intergenic |
| AGCCAAGCTTCTCAGGTTCA+GGG | 0.521507 | 4_1:-26336495 | Msa0542240:CDS |
| ATTGACCTAGTCCAATGTCT+TGG | 0.521867 | 4_1:+26337548 | None:intergenic |
| ACTCTGTCATTGTGATTCCA+AGG | 0.523097 | 4_1:-26337469 | Msa0542240:CDS |
| GGAAGCAACAAATCAATAGC+TGG | 0.527319 | 4_1:+26337758 | None:intergenic |
| AATCAAGCTTCTCAGGTTCA+GGG | 0.528452 | 4_1:-26336540 | Msa0542240:CDS |
| TGGTCATTTAAGTCCACCTC+AGG | 0.531490 | 4_1:+26339543 | None:intergenic |
| AATCCTTATATCCTCCATCA+TGG | 0.534274 | 4_1:+26337430 | None:intergenic |
| GGTCCCACTGCTGAGGGTGA+GGG | 0.535123 | 4_1:-26339630 | Msa0542240:CDS |
| TAGTGTAGGTCCCACTGCTG+AGG | 0.536905 | 4_1:-26339637 | Msa0542240:intron |
| TGGGTTAGGGAATGAAAATG+AGG | 0.537603 | 4_1:-26339277 | Msa0542240:CDS |
| GATAGCTGGTGGTTGAAGAT+CGG | 0.537738 | 4_1:+26336845 | None:intergenic |
| TGAGGATCTGGCTGGTGAGA+AGG | 0.539286 | 4_1:-26339259 | Msa0542240:CDS |
| AGCATCAACTAGGAAGAGAA+AGG | 0.547023 | 4_1:-26336427 | Msa0542240:CDS |
| TATTGATTTGTTGCTTCCTG+AGG | 0.547901 | 4_1:-26337753 | Msa0542240:CDS |
| GGATTTATGTCATGCAGAGG+TGG | 0.548528 | 4_1:-26337412 | Msa0542240:CDS |
| GATGGTGGTGTAACTGGTGT+AGG | 0.549726 | 4_1:-26339597 | Msa0542240:CDS |
| GAAGTTGGACAAAATAGTCA+TGG | 0.551663 | 4_1:-26339441 | Msa0542240:CDS |
| CCAAAACAATCTGCAAAGCC+AGG | 0.552811 | 4_1:-26336297 | Msa0542240:CDS |
| TGGTGAGTCAGAAGCAGAGG+TGG | 0.557655 | 4_1:-26339211 | Msa0542240:CDS |
| GGAAATTAAGGCTATAAGTG+AGG | 0.557790 | 4_1:-26337600 | Msa0542240:CDS |
| TACCCTGAACCTGAGAAGCT+TGG | 0.560959 | 4_1:+26336493 | None:intergenic |
| GACAAGAGGAGAAAGAAGGG+AGG | 0.562572 | 4_1:-26336273 | Msa0542240:CDS |
| ATGTGGGTGAGCCTGGGCTA+GGG | 0.564257 | 4_1:-26339326 | Msa0542240:CDS |
| TGGTTGGTGAGTATGATAAT+GGG | 0.565236 | 4_1:-26339494 | Msa0542240:CDS |
| CTGTGAATGTGGGTGAGCCT+GGG | 0.570195 | 4_1:-26339332 | Msa0542240:CDS |
| AGGTGGAATTGGAGTTGATG+TGG | 0.574739 | 4_1:-26339160 | Msa0542240:CDS |
| GTGAAATAGATCCAAGACAT+TGG | 0.574774 | 4_1:-26337559 | Msa0542240:CDS |
| GATTTATGTCATGCAGAGGT+GGG | 0.575651 | 4_1:-26337411 | Msa0542240:CDS |
| TGAGTCTCAACTTGTGCTTG+AGG | 0.576936 | 4_1:+26336618 | None:intergenic |
| GACTCAAACCAGTCAGCCAC+AGG | 0.579599 | 4_1:-26336601 | Msa0542240:CDS |
| TAGATCCAAGACATTGGACT+AGG | 0.580081 | 4_1:-26337553 | Msa0542240:CDS |
| GCCAGTTGTTTCCATGATGG+AGG | 0.583845 | 4_1:-26337441 | Msa0542240:CDS |
| AGTGTAGGTCCCACTGCTGA+GGG | 0.584283 | 4_1:-26339636 | Msa0542240:intron |
| GGAGACTTAGACAGTGAGGT+AGG | 0.591116 | 4_1:-26339180 | Msa0542240:CDS |
| GAGGGTTCAAATGCTGATGG+TGG | 0.595119 | 4_1:-26339612 | Msa0542240:CDS |
| GTTTGAGTCTCTGATTCAGG+AGG | 0.595918 | 4_1:+26336657 | None:intergenic |
| TGCTTCCTGAGGTTGAGCAG+AGG | 0.597230 | 4_1:-26337742 | Msa0542240:CDS |
| ATTGATGAGAATGAATTGGT+TGG | 0.602699 | 4_1:-26339510 | Msa0542240:CDS |
| AGAATAGGCAGAAAATTACA+AGG | 0.607332 | 4_1:-26337385 | Msa0542240:CDS |
| GGTGAGTCAGAAGCAGAGGT+GGG | 0.609791 | 4_1:-26339210 | Msa0542240:CDS |
| CTGGAACAAAGAGAAAATCC+AGG | 0.610932 | 4_1:-26340499 | Msa0542240:intron |
| TCTCATCAATCATTGGGCCA+TGG | 0.611466 | 4_1:+26339523 | None:intergenic |
| CATATGGAATCAAATGCAGT+AGG | 0.612227 | 4_1:-26336737 | Msa0542240:CDS |
| GGTGAGGGTTCAAATGCTGA+TGG | 0.614922 | 4_1:-26339615 | Msa0542240:CDS |
| ACATGCTGATGGGCCTGAGG+TGG | 0.615733 | 4_1:-26339556 | Msa0542240:CDS |
| AGTGGAAGAAACTGTGAATG+TGG | 0.618036 | 4_1:-26339376 | Msa0542240:CDS |
| AGAAACTGTGAATGTGGGTG+AGG | 0.618668 | 4_1:-26339370 | Msa0542240:CDS |
| TGAACCCTCACCCTCAGCAG+TGG | 0.618681 | 4_1:+26339626 | None:intergenic |
| GAACCCTCACCCTCAGCAGT+GGG | 0.619167 | 4_1:+26339627 | None:intergenic |
| AGTGGAGGAAACTGTGAATG+TGG | 0.620332 | 4_1:-26339343 | Msa0542240:CDS |
| AAGTTGGACAAAATAGTCAT+GGG | 0.623438 | 4_1:-26339440 | Msa0542240:CDS |
| TGTTGTGAATCAAACTGAAG+TGG | 0.623562 | 4_1:-26339094 | Msa0542240:CDS |
| GTTGAGTGTACACATGCTGA+TGG | 0.623920 | 4_1:-26339567 | Msa0542240:CDS |
| CTGCAAAGCCAGGAGACAAG+AGG | 0.627386 | 4_1:-26336287 | Msa0542240:CDS |
| TTGAGTGTACACATGCTGAT+GGG | 0.630401 | 4_1:-26339566 | Msa0542240:CDS |
| TCATGGGCCTGAGCTAGAGA+AGG | 0.630984 | 4_1:-26339424 | Msa0542240:CDS |
| TGTGGGTGAGGCACCAGTGG+AGG | 0.631555 | 4_1:-26339358 | Msa0542240:CDS |
| GAATGTGGGTGAGGCACCAG+TGG | 0.632214 | 4_1:-26339361 | Msa0542240:CDS |
| CTCACCAAAATCTACACCAA+AGG | 0.634343 | 4_1:+26339227 | None:intergenic |
| GACTTAGACAGTGAGGTAGG+TGG | 0.634372 | 4_1:-26339177 | Msa0542240:CDS |
| GAATGTGAGTGAGGCACCAG+TGG | 0.639650 | 4_1:-26339394 | Msa0542240:CDS |
| AATTAAGGCTATAAGTGAGG+AGG | 0.641286 | 4_1:-26337597 | Msa0542240:CDS |
| GAGGTGGACTTAAATGACCA+TGG | 0.643375 | 4_1:-26339540 | Msa0542240:CDS |
| AATGAAAATGAGGATCTGGC+TGG | 0.646878 | 4_1:-26339267 | Msa0542240:CDS |
| AATCAAACTGAAGTGGGTGA+AGG | 0.647438 | 4_1:-26339087 | Msa0542240:CDS |
| TACACATGCTGATGGGCCTG+AGG | 0.649535 | 4_1:-26339559 | Msa0542240:CDS |
| TGCAGTAGGTGCAAGCAATG+TGG | 0.650916 | 4_1:-26336723 | Msa0542240:CDS |
| AGCAGGAGACTTAGACAGTG+AGG | 0.654339 | 4_1:-26339184 | Msa0542240:CDS |
| TAAGGATTTATGTCATGCAG+AGG | 0.655039 | 4_1:-26337415 | Msa0542240:CDS |
| GCATGTGTACACTCAACAGT+GGG | 0.657460 | 4_1:+26339573 | None:intergenic |
| GTTGTGAATCAAACTGAAGT+GGG | 0.672017 | 4_1:-26339093 | Msa0542240:CDS |
| AGCATGTGTACACTCAACAG+TGG | 0.691406 | 4_1:+26339572 | None:intergenic |
| GGAAACTGTGAATGTGAGTG+AGG | 0.692474 | 4_1:-26339403 | Msa0542240:CDS |
| TGTTGAGACAGAGACTGAAG+TGG | 0.701597 | 4_1:-26339130 | Msa0542240:CDS |
| GTTTGAGTCTGAGATACCTG+TGG | 0.703378 | 4_1:+26336585 | None:intergenic |
| GTGGAAGAAACTGTGAATGT+GGG | 0.705644 | 4_1:-26339375 | Msa0542240:CDS |
| GTGGAGGAAACTGTGAATGT+GGG | 0.707940 | 4_1:-26339342 | Msa0542240:CDS |
| AGTGGGTGAAGGATCTGTGA+GGG | 0.739409 | 4_1:-26339076 | Msa0542240:intron |
| GTTGAGACAGAGACTGAAGT+GGG | 0.744646 | 4_1:-26339129 | Msa0542240:CDS |
| AAGTGGGTGAAGGATCTGTG+AGG | 0.773976 | 4_1:-26339077 | Msa0542240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAAGGATTATAAA+TGG | - | chr4_1:26338078-26338097 | Msa0542240:intron | 15.0% |
| !! | TAAAATGAAGGATTATAAAT+GGG | - | chr4_1:26338079-26338098 | Msa0542240:intron | 15.0% |
| !! | TCTTAAAATTTCAACTATAA+TGG | - | chr4_1:26338397-26338416 | Msa0542240:intron | 15.0% |
| !! | ATATTTAATCAACATACAAA+TGG | + | chr4_1:26339596-26339615 | None:intergenic | 15.0% |
| !!! | AATATTTTGTATTAAGTTTC+TGG | - | chr4_1:26339611-26339630 | Msa0542240:CDS | 15.0% |
| !! | TTTAGTGCACATATTTAATT+AGG | - | chr4_1:26336710-26336729 | Msa0542240:CDS | 20.0% |
| !! | TTAGTGCACATATTTAATTA+GGG | - | chr4_1:26336711-26336730 | Msa0542240:CDS | 20.0% |
| !!! | AACATAACCTAATCTTTTTA+AGG | + | chr4_1:26336908-26336927 | None:intergenic | 20.0% |
| !! | TTATAGGATATTCTTTCAAT+GGG | + | chr4_1:26337095-26337114 | None:intergenic | 20.0% |
| !! | ATTATAGGATATTCTTTCAA+TGG | + | chr4_1:26337096-26337115 | None:intergenic | 20.0% |
| !! | ATTGAAAGAATATCCTATAA+TGG | - | chr4_1:26337095-26337114 | Msa0542240:intron | 20.0% |
| !!! | TTATAATCCTTCATTTTATC+TGG | + | chr4_1:26338077-26338096 | None:intergenic | 20.0% |
| !!! | AGAATGTATGTATGTTTTAA+GGG | - | chr4_1:26338659-26338678 | Msa0542240:intron | 20.0% |
| !!! | TTTGTTGTATTGTATCTATT+AGG | - | chr4_1:26339012-26339031 | Msa0542240:intron | 20.0% |
| !! | TTGTTGTATTGTATCTATTA+GGG | - | chr4_1:26339013-26339032 | Msa0542240:intron | 20.0% |
| !! | AAAAACTAAAAGAGTTAATG+TGG | - | chr4_1:26339131-26339150 | Msa0542240:CDS | 20.0% |
| !! | AATCATCTTATACAAATAAC+TGG | - | chr4_1:26339488-26339507 | Msa0542240:CDS | 20.0% |
| !!! | AGGTATTAATTTTCATTTGT+AGG | - | chr4_1:26339517-26339536 | Msa0542240:CDS | 20.0% |
| !!! | AATCTTTGGTTTTTCTGATT+AGG | - | chr4_1:26336352-26336371 | Msa0542240:CDS | 25.0% |
| !!! | ATCTTTGGTTTTTCTGATTA+GGG | - | chr4_1:26336353-26336372 | Msa0542240:CDS | 25.0% |
| ! | AACTCATATTTGTTCTGATT+AGG | - | chr4_1:26336471-26336490 | Msa0542240:CDS | 25.0% |
| ! | AGGGATTAGAAAAATTTCTA+AGG | - | chr4_1:26336510-26336529 | Msa0542240:CDS | 25.0% |
| !! | GATGATTTTTGTAGATAGTA+AGG | - | chr4_1:26336546-26336565 | Msa0542240:CDS | 25.0% |
| !!! | CAAAAATCAACTTTTGAAGA+GGG | + | chr4_1:26336608-26336627 | None:intergenic | 25.0% |
| !!! | ACAAAAATCAACTTTTGAAG+AGG | + | chr4_1:26336609-26336628 | None:intergenic | 25.0% |
| ! | TTAGCAACCTTAAAAAGATT+AGG | - | chr4_1:26336898-26336917 | Msa0542240:intron | 25.0% |
| ! | ATATTGCATATCAGTTTGAT+AGG | - | chr4_1:26337016-26337035 | Msa0542240:intron | 25.0% |
| ! | TATTGCATATCAGTTTGATA+GGG | - | chr4_1:26337017-26337036 | Msa0542240:intron | 25.0% |
| ! | ATTCATTCTCATCAATCATT+GGG | + | chr4_1:26337287-26337306 | None:intergenic | 25.0% |
| ! | AATTCATTCTCATCAATCAT+TGG | + | chr4_1:26337288-26337307 | None:intergenic | 25.0% |
| ! | AATGATTGATGAGAATGAAT+TGG | - | chr4_1:26337287-26337306 | Msa0542240:intron | 25.0% |
| ! | TAAAGATAACACTTCTAACA+AGG | - | chr4_1:26337755-26337774 | Msa0542240:CDS | 25.0% |
| ! | AAAGATAACACTTCTAACAA+GGG | - | chr4_1:26337756-26337775 | Msa0542240:CDS | 25.0% |
| ! | ACATTATTGAGCAATTACAA+AGG | - | chr4_1:26337895-26337914 | Msa0542240:intron | 25.0% |
| !!! | TGAGTCAAAGTTAGTTTTTA+TGG | - | chr4_1:26338118-26338137 | Msa0542240:intron | 25.0% |
| !! | AAATTTCAACTATAATGGAG+AGG | - | chr4_1:26338402-26338421 | Msa0542240:intron | 25.0% |
| !! | AATTTCAACTATAATGGAGA+GGG | - | chr4_1:26338403-26338422 | Msa0542240:intron | 25.0% |
| ! | ATTATGCTCATGAATTACTA+AGG | - | chr4_1:26338537-26338556 | Msa0542240:intron | 25.0% |
| !! | GAGAATGTATGTATGTTTTA+AGG | - | chr4_1:26338658-26338677 | Msa0542240:intron | 25.0% |
| !!! | GAATGTATGTATGTTTTAAG+GGG | - | chr4_1:26338660-26338679 | Msa0542240:intron | 25.0% |
| ! | AAGCTTCTCATAAATGATTT+GGG | - | chr4_1:26338860-26338879 | Msa0542240:intron | 25.0% |
| !!! | ATACATTTTGTTTATGTCTC+TGG | - | chr4_1:26338967-26338986 | Msa0542240:intron | 25.0% |
| !!! | AATTTTAGAAAGAGATTTCC+TGG | - | chr4_1:26339106-26339125 | Msa0542240:CDS | 25.0% |
| !!! | AACTCTTTTAGTTTTTTACC+AGG | + | chr4_1:26339127-26339146 | None:intergenic | 25.0% |
| ! | AAAGGATATGAAGGAAATTA+AGG | - | chr4_1:26339189-26339208 | Msa0542240:CDS | 25.0% |
| ! | AAAATTACAAGGTTTGATGA+TGG | - | chr4_1:26339427-26339446 | Msa0542240:CDS | 25.0% |
| ! | ATACAAATAACTGGATAGTA+AGG | - | chr4_1:26339497-26339516 | Msa0542240:CDS | 25.0% |
| ! | TTCATTATGCATTAAGTTTC+TGG | - | chr4_1:26339636-26339655 | Msa0542240:intron | 25.0% |
| ! | ACCTAAAAAGAAAAGAAGAT+TGG | - | chr4_1:26339996-26340015 | Msa0542240:intron | 25.0% |
| !! | TCCAATCTTCTTTTCTTTTT+AGG | + | chr4_1:26340000-26340019 | None:intergenic | 25.0% |
| !! | GAAGTTTTGTATGAATGTGT+TGG | - | chr4_1:26336409-26336428 | Msa0542240:CDS | 30.0% |
| ! | TAGGATTTCGAAATTTTGCT+AGG | - | chr4_1:26336490-26336509 | Msa0542240:CDS | 30.0% |
| ! | AGGATTTCGAAATTTTGCTA+GGG | - | chr4_1:26336491-26336510 | Msa0542240:CDS | 30.0% |
| !!! | TTTCTAAGGTTTTGCAGATA+TGG | - | chr4_1:26336524-26336543 | Msa0542240:CDS | 30.0% |
| ! | TTGATTTTTGTCTGTTGTGT+TGG | - | chr4_1:26336618-26336637 | Msa0542240:CDS | 30.0% |
| !! | GTTTTGAACGAAATAAAGCA+TGG | - | chr4_1:26336643-26336662 | Msa0542240:CDS | 30.0% |
| GTGCACTAAAATCGAAAAAA+TGG | + | chr4_1:26336700-26336719 | None:intergenic | 30.0% | |
| !! | TAGCTTTGAATAGTGACATA+GGG | - | chr4_1:26336977-26336996 | Msa0542240:intron | 30.0% |
| TCATTTGTTTCATTCCTAAC+AGG | + | chr4_1:26337135-26337154 | None:intergenic | 30.0% | |
| ATTGATGAGAATGAATTGGT+TGG | - | chr4_1:26337291-26337310 | Msa0542240:intron | 30.0% | |
| AAGTTGGACAAAATAGTCAT+GGG | - | chr4_1:26337361-26337380 | Msa0542240:CDS | 30.0% | |
| AAGATAACACTTCTAACAAG+GGG | - | chr4_1:26337757-26337776 | Msa0542240:CDS | 30.0% | |
| !!! | TTTCCTGGTTGTTTTTTCTT+GGG | + | chr4_1:26337855-26337874 | None:intergenic | 30.0% |
| !!! | TTTTCCTGGTTGTTTTTTCT+TGG | + | chr4_1:26337856-26337875 | None:intergenic | 30.0% |
| ATAATGTCATCTTCAAACAC+AGG | + | chr4_1:26337882-26337901 | None:intergenic | 30.0% | |
| AATTCTGATGACTTGAATAG+TGG | - | chr4_1:26337996-26338015 | Msa0542240:intron | 30.0% | |
| !! | CATTTTGAAAGTTGGGAATT+TGG | + | chr4_1:26338054-26338073 | None:intergenic | 30.0% |
| !! | TATCTGGCATTTTGAAAGTT+GGG | + | chr4_1:26338061-26338080 | None:intergenic | 30.0% |
| !! | TTATCTGGCATTTTGAAAGT+TGG | + | chr4_1:26338062-26338081 | None:intergenic | 30.0% |
| CAAAATGCCAGATAAAATGA+AGG | - | chr4_1:26338067-26338086 | Msa0542240:intron | 30.0% | |
| AATGAAGGATTATAAATGGG+AGG | - | chr4_1:26338082-26338101 | Msa0542240:intron | 30.0% | |
| AGAATGATAAAGAAAGAGTG+AGG | - | chr4_1:26338192-26338211 | Msa0542240:intron | 30.0% | |
| GAATGATAAAGAAAGAGTGA+GGG | - | chr4_1:26338193-26338212 | Msa0542240:intron | 30.0% | |
| AATTCATCAAACTCACATTG+TGG | + | chr4_1:26338328-26338347 | None:intergenic | 30.0% | |
| TGAGTTTGATGAATTCTAGA+TGG | - | chr4_1:26338333-26338352 | Msa0542240:intron | 30.0% | |
| TTGATGAATTCTAGATGGTT+AGG | - | chr4_1:26338338-26338357 | Msa0542240:intron | 30.0% | |
| GAGAAGTGGAATATTCAAAT+GGG | - | chr4_1:26338431-26338450 | Msa0542240:intron | 30.0% | |
| TAATCTTGACAGTTGAATGA+GGG | + | chr4_1:26338568-26338587 | None:intergenic | 30.0% | |
| TAGGACAAACTATTGCATTT+GGG | + | chr4_1:26338631-26338650 | None:intergenic | 30.0% | |
| !! | ACATACATTCTCTGAAATCT+AGG | + | chr4_1:26338650-26338669 | None:intergenic | 30.0% |
| TTCAAATGCAGAAAGATCAT+TGG | - | chr4_1:26338698-26338717 | Msa0542240:intron | 30.0% | |
| TCAAATGCAGAAAGATCATT+GGG | - | chr4_1:26338699-26338718 | Msa0542240:intron | 30.0% | |
| !! | ATTGGAAGTATTTGGTCATT+TGG | + | chr4_1:26338788-26338807 | None:intergenic | 30.0% |
| !! | CAAATGCAATTGGAAGTATT+TGG | + | chr4_1:26338796-26338815 | None:intergenic | 30.0% |
| AATCATTTATGAGAAGCTTC+AGG | + | chr4_1:26338859-26338878 | None:intergenic | 30.0% | |
| GAAGCTTCTCATAAATGATT+TGG | - | chr4_1:26338859-26338878 | Msa0542240:intron | 30.0% | |
| AATCACAATGACAGAGTTAA+AGG | + | chr4_1:26339329-26339348 | None:intergenic | 30.0% | |
| AGAATAGGCAGAAAATTACA+AGG | - | chr4_1:26339416-26339435 | Msa0542240:CDS | 30.0% | |
| ! | TCTAGCTTCTTCTTGATATT+TGG | + | chr4_1:26339463-26339482 | None:intergenic | 30.0% |
| TATCAAGAAGAAGCTAGAAA+AGG | - | chr4_1:26339465-26339484 | Msa0542240:CDS | 30.0% | |
| AAGAAAATAAACCAGAAACC+AGG | + | chr4_1:26339665-26339684 | None:intergenic | 30.0% | |
| !!! | GGTTTCTGGTTTATTTTCTT+AGG | - | chr4_1:26339665-26339684 | Msa0542240:intron | 30.0% |
| !! | TTTATTTTCTTAGGCAAGGT+GGG | - | chr4_1:26339674-26339693 | Msa0542240:intron | 30.0% |
| AACTTGATAAATGGATCACT+TGG | + | chr4_1:26339711-26339730 | None:intergenic | 30.0% | |
| ! | TTTGTGTTTTATGCAAGCAA+TGG | + | chr4_1:26339818-26339837 | None:intergenic | 30.0% |
| ATATGCTTCTTTCTTGTAGA+TGG | + | chr4_1:26339869-26339888 | None:intergenic | 30.0% | |
| !! | AAAAGCAAAAAGCATCAACT+AGG | - | chr4_1:26340364-26340383 | Msa0542240:intron | 30.0% |
| !!! | ATTTTTTCGCGAAGAAGAAG+AGG | + | chr4_1:26336335-26336354 | None:intergenic | 35.0% |
| CTTCTTCGCGAAAAAATCTT+TGG | - | chr4_1:26336338-26336357 | Msa0542240:CDS | 35.0% | |
| ATAGTAAGGTTCTGTATGCA+TGG | - | chr4_1:26336560-26336579 | Msa0542240:CDS | 35.0% | |
| !! | CCATCTGTTTTGAGCAATTA+AGG | + | chr4_1:26336756-26336775 | None:intergenic | 35.0% |
| CCTTAATTGCTCAAAACAGA+TGG | - | chr4_1:26336753-26336772 | Msa0542240:CDS | 35.0% | |
| GCAAAATAGCTGAAAACATC+TGG | + | chr4_1:26336874-26336893 | None:intergenic | 35.0% | |
| !! | GTAGCTTTGAATAGTGACAT+AGG | - | chr4_1:26336976-26336995 | Msa0542240:intron | 35.0% |
| !! | ACAATTTCAGGTTGTGACAT+GGG | + | chr4_1:26337063-26337082 | None:intergenic | 35.0% |
| !! | TACAATTTCAGGTTGTGACA+TGG | + | chr4_1:26337064-26337083 | None:intergenic | 35.0% |
| TTGTTTCATTCCTAACAGGT+GGG | + | chr4_1:26337131-26337150 | None:intergenic | 35.0% | |
| TTTGTTTCATTCCTAACAGG+TGG | + | chr4_1:26337132-26337151 | None:intergenic | 35.0% | |
| !! | TTGGTTGGTGAGTATGATAA+TGG | - | chr4_1:26337306-26337325 | Msa0542240:CDS | 35.0% |
| !! | TGGTTGGTGAGTATGATAAT+GGG | - | chr4_1:26337307-26337326 | Msa0542240:CDS | 35.0% |
| GAAGTTGGACAAAATAGTCA+TGG | - | chr4_1:26337360-26337379 | Msa0542240:CDS | 35.0% | |
| CTAGGGAATGAAAATGACTT+TGG | - | chr4_1:26337492-26337511 | Msa0542240:CDS | 35.0% | |
| !! | AATGACTTTGGCTTTGACTT+TGG | - | chr4_1:26337504-26337523 | Msa0542240:CDS | 35.0% |
| !! | ATGACTTTGGCTTTGACTTT+GGG | - | chr4_1:26337505-26337524 | Msa0542240:CDS | 35.0% |
| TGTTGTGAATCAAACTGAAG+TGG | - | chr4_1:26337707-26337726 | Msa0542240:CDS | 35.0% | |
| GTTGTGAATCAAACTGAAGT+GGG | - | chr4_1:26337708-26337727 | Msa0542240:CDS | 35.0% | |
| AAGGATTATAAATGGGAGGT+TGG | - | chr4_1:26338086-26338105 | Msa0542240:intron | 35.0% | |
| ATGGAAGCAATGAGAACTTA+TGG | - | chr4_1:26338137-26338156 | Msa0542240:intron | 35.0% | |
| TAGGTGTTAAACTTCATGCA+AGG | - | chr4_1:26338357-26338376 | Msa0542240:intron | 35.0% | |
| AGGTGTTAAACTTCATGCAA+GGG | - | chr4_1:26338358-26338377 | Msa0542240:intron | 35.0% | |
| GGAGAAGTGGAATATTCAAA+TGG | - | chr4_1:26338430-26338449 | Msa0542240:intron | 35.0% | |
| AGTGGAATATTCAAATGGGT+AGG | - | chr4_1:26338435-26338454 | Msa0542240:intron | 35.0% | |
| !! | TATGCAGTGGAATTTGTTGA+AGG | - | chr4_1:26338482-26338501 | Msa0542240:intron | 35.0% |
| !! | ATGCAGTGGAATTTGTTGAA+GGG | - | chr4_1:26338483-26338502 | Msa0542240:intron | 35.0% |
| !! | GCTTTAGAGATCAATACACA+AGG | - | chr4_1:26338507-26338526 | Msa0542240:intron | 35.0% |
| GTAATCTTGACAGTTGAATG+AGG | + | chr4_1:26338569-26338588 | None:intergenic | 35.0% | |
| ATTACATCAACCCCATATGA+AGG | - | chr4_1:26338584-26338603 | Msa0542240:intron | 35.0% | |
| CTAGGACAAACTATTGCATT+TGG | + | chr4_1:26338632-26338651 | None:intergenic | 35.0% | |
| TCAACAACTGCAAATGCAAT+TGG | + | chr4_1:26338806-26338825 | None:intergenic | 35.0% | |
| ATTGCATTTGCAGTTGTTGA+AGG | - | chr4_1:26338806-26338825 | Msa0542240:intron | 35.0% | |
| ! | CTTCTCATAAATGATTTGGG+AGG | - | chr4_1:26338863-26338882 | Msa0542240:intron | 35.0% |
| !! | TATTGATTTGTTGCTTCCTG+AGG | - | chr4_1:26339048-26339067 | Msa0542240:intron | 35.0% |
| AGCATTTCTGTATGTAGCTT+TGG | + | chr4_1:26339164-26339183 | None:intergenic | 35.0% | |
| AAGCTACATACAGAAATGCT+TGG | - | chr4_1:26339164-26339183 | Msa0542240:CDS | 35.0% | |
| AGCTACATACAGAAATGCTT+GGG | - | chr4_1:26339165-26339184 | Msa0542240:CDS | 35.0% | |
| ATACAGAAATGCTTGGGAAA+AGG | - | chr4_1:26339171-26339190 | Msa0542240:CDS | 35.0% | |
| GGAAATTAAGGCTATAAGTG+AGG | - | chr4_1:26339201-26339220 | Msa0542240:CDS | 35.0% | |
| AATTAAGGCTATAAGTGAGG+AGG | - | chr4_1:26339204-26339223 | Msa0542240:CDS | 35.0% | |
| TGGATCTATTTCACACAGAT+AGG | + | chr4_1:26339236-26339255 | None:intergenic | 35.0% | |
| GTGAAATAGATCCAAGACAT+TGG | - | chr4_1:26339242-26339261 | Msa0542240:CDS | 35.0% | |
| ! | TGGACTAGGTCAATGTTTAA+AGG | - | chr4_1:26339262-26339281 | Msa0542240:CDS | 35.0% |
| ! | TTTCCATGATGGAGGATATA+AGG | - | chr4_1:26339368-26339387 | Msa0542240:CDS | 35.0% |
| AATCCTTATATCCTCCATCA+TGG | + | chr4_1:26339374-26339393 | None:intergenic | 35.0% | |
| TAAGGATTTATGTCATGCAG+AGG | - | chr4_1:26339386-26339405 | Msa0542240:CDS | 35.0% | |
| !! | CTGGTTTATTTTCTTAGGCA+AGG | - | chr4_1:26339670-26339689 | Msa0542240:intron | 35.0% |
| !! | GTTTATTTTCTTAGGCAAGG+TGG | - | chr4_1:26339673-26339692 | Msa0542240:intron | 35.0% |
| ! | TTATTTTCTTAGGCAAGGTG+GGG | - | chr4_1:26339675-26339694 | Msa0542240:intron | 35.0% |
| GTGATCCATTTATCAAGTTC+TGG | - | chr4_1:26339712-26339731 | Msa0542240:intron | 35.0% | |
| TGTCTCCAGAACTTGATAAA+TGG | + | chr4_1:26339720-26339739 | None:intergenic | 35.0% | |
| CAGCTATCAAAAAACAACCT+GGG | - | chr4_1:26339971-26339990 | Msa0542240:intron | 35.0% | |
| !! | CAAATGAAGAGAGCATCATA+TGG | - | chr4_1:26340048-26340067 | Msa0542240:intron | 35.0% |
| CATATGGAATCAAATGCAGT+AGG | - | chr4_1:26340064-26340083 | Msa0542240:intron | 35.0% | |
| !! | CTTTTTGCTTTTGAGAAGCT+TGG | + | chr4_1:26340356-26340375 | None:intergenic | 35.0% |
| AACTAGGAAGAGAAAGGTTA+AGG | - | chr4_1:26340380-26340399 | Msa0542240:intron | 35.0% | |
| ATGCTCCAACTAAGAAGATA+AGG | - | chr4_1:26340454-26340473 | Msa0542240:intron | 35.0% | |
| TGCTCCAACTAAGAAGATAA+GGG | - | chr4_1:26340455-26340474 | Msa0542240:intron | 35.0% | |
| CTGGAACAAAGAGAAAATCC+AGG | - | chr4_1:26336302-26336321 | Msa0542240:CDS | 40.0% | |
| AGAAGAAGAGGAAACAAACC+TGG | + | chr4_1:26336323-26336342 | None:intergenic | 40.0% | |
| !! | CTGTTTTGAGCAATTAAGGC+AGG | + | chr4_1:26336752-26336771 | None:intergenic | 40.0% |
| TTTAGTGACCCTGAGTATGT+AGG | - | chr4_1:26336823-26336842 | Msa0542240:CDS | 40.0% | |
| TCACAGTCAAGTACTTCTTC+TGG | + | chr4_1:26336850-26336869 | None:intergenic | 40.0% | |
| ATGTTAGACTGAAGTCCTTG+TGG | - | chr4_1:26336923-26336942 | Msa0542240:intron | 40.0% | |
| AGCAGGATCAAAATACCACA+AGG | + | chr4_1:26336941-26336960 | None:intergenic | 40.0% | |
| !!! | GTGGTATTTTGATCCTGCTA+TGG | - | chr4_1:26336942-26336961 | Msa0542240:intron | 40.0% |
| TTTGATCCTGCTATGGAAGA+TGG | - | chr4_1:26336949-26336968 | Msa0542240:intron | 40.0% | |
| ATAGTGACATAGGGTGTAGA+AGG | - | chr4_1:26336986-26337005 | Msa0542240:intron | 40.0% | |
| !! | CAATTTCAGGTTGTGACATG+GGG | + | chr4_1:26337062-26337081 | None:intergenic | 40.0% |
| GGGTTAAGCTCTACAATTTC+AGG | + | chr4_1:26337075-26337094 | None:intergenic | 40.0% | |
| AATGAAAGTCCCACTAGTGT+AGG | - | chr4_1:26337150-26337169 | Msa0542240:intron | 40.0% | |
| TTGAGTGTACACATGCTGAT+GGG | - | chr4_1:26337235-26337254 | Msa0542240:intron | 40.0% | |
| !! | TATGATAATGGGCCTGGATT+AGG | - | chr4_1:26337318-26337337 | Msa0542240:CDS | 40.0% |
| ACATTCACAGTTTCTTCCAC+TGG | + | chr4_1:26337426-26337445 | None:intergenic | 40.0% | |
| AGTGGAAGAAACTGTGAATG+TGG | - | chr4_1:26337425-26337444 | Msa0542240:CDS | 40.0% | |
| GTGGAAGAAACTGTGAATGT+GGG | - | chr4_1:26337426-26337445 | Msa0542240:CDS | 40.0% | |
| !! | TTTGGCTTTGACTTTGGGTT+AGG | - | chr4_1:26337510-26337529 | Msa0542240:CDS | 40.0% |
| !! | TTGGCTTTGACTTTGGGTTA+GGG | - | chr4_1:26337511-26337530 | Msa0542240:CDS | 40.0% |
| ! | TGGGTTAGGGAATGAAAATG+AGG | - | chr4_1:26337524-26337543 | Msa0542240:CDS | 40.0% |
| AGGGAATGAAAATGAGGATC+TGG | - | chr4_1:26337530-26337549 | Msa0542240:CDS | 40.0% | |
| AATGAAAATGAGGATCTGGC+TGG | - | chr4_1:26337534-26337553 | Msa0542240:CDS | 40.0% | |
| !! | AGTGCCTTTGGTGTAGATTT+TGG | - | chr4_1:26337570-26337589 | Msa0542240:CDS | 40.0% |
| CTCACCAAAATCTACACCAA+AGG | + | chr4_1:26337577-26337596 | None:intergenic | 40.0% | |
| AATCAAACTGAAGTGGGTGA+AGG | - | chr4_1:26337714-26337733 | Msa0542240:CDS | 40.0% | |
| ACACTTCTAACAAGGGGAAA+AGG | - | chr4_1:26337763-26337782 | Msa0542240:CDS | 40.0% | |
| TAACAAGGGGAAAAGGAAGA+AGG | - | chr4_1:26337770-26337789 | Msa0542240:CDS | 40.0% | |
| AACAAGGGGAAAAGGAAGAA+GGG | - | chr4_1:26337771-26337790 | Msa0542240:intron | 40.0% | |
| TCTCAGAAGAAGAGTGAAAC+TGG | - | chr4_1:26337804-26337823 | Msa0542240:intron | 40.0% | |
| CTCAGAAGAAGAGTGAAACT+GGG | - | chr4_1:26337805-26337824 | Msa0542240:intron | 40.0% | |
| AAGAAGAGTGAAACTGGGAA+GGG | - | chr4_1:26337810-26337829 | Msa0542240:intron | 40.0% | |
| AGACCCAAGAAAAAACAACC+AGG | - | chr4_1:26337849-26337868 | Msa0542240:intron | 40.0% | |
| ! | TCAAACACAGGATCTTTTCC+TGG | + | chr4_1:26337870-26337889 | None:intergenic | 40.0% |
| AGAACTTATGGAGTACACTC+TGG | - | chr4_1:26338149-26338168 | Msa0542240:intron | 40.0% | |
| ! | TTATGGAGTACACTCTGGAA+GGG | - | chr4_1:26338154-26338173 | Msa0542240:intron | 40.0% |
| GATAAAGAAAGAGTGAGGGT+TGG | - | chr4_1:26338197-26338216 | Msa0542240:intron | 40.0% | |
| GCATTCTGTGCTAAAATACC+TGG | - | chr4_1:26338245-26338264 | Msa0542240:intron | 40.0% | |
| AAATACCTGGTGAAGAGACA+TGG | - | chr4_1:26338258-26338277 | Msa0542240:intron | 40.0% | |
| ! | AACTATAATGGAGAGGGTTC+AGG | - | chr4_1:26338409-26338428 | Msa0542240:intron | 40.0% |
| ! | TAGAGCAAAGAAGTATGCAG+TGG | - | chr4_1:26338469-26338488 | Msa0542240:intron | 40.0% |
| ! | CTATTGCATTTGGGTTCTCT+AGG | + | chr4_1:26338622-26338641 | None:intergenic | 40.0% |
| !!! | TGTATGTTTTAAGGGGTGCA+TGG | - | chr4_1:26338667-26338686 | Msa0542240:intron | 40.0% |
| AGAAAGATCATTGGGCTTGA+TGG | - | chr4_1:26338707-26338726 | Msa0542240:intron | 40.0% | |
| ! | CTTGATGGTTGCTTCCTTAA+GGG | - | chr4_1:26338722-26338741 | Msa0542240:intron | 40.0% |
| ! | TTGATGGTTGCTTCCTTAAG+GGG | - | chr4_1:26338723-26338742 | Msa0542240:intron | 40.0% |
| GTCATTTGGATCCATTCCAA+TGG | + | chr4_1:26338774-26338793 | None:intergenic | 40.0% | |
| AAGGAGAGACTAAAGAGTCT+TGG | - | chr4_1:26338825-26338844 | Msa0542240:intron | 40.0% | |
| AGACTAAAGAGTCTTGGACA+TGG | - | chr4_1:26338831-26338850 | Msa0542240:intron | 40.0% | |
| CTTCTGTTGATCACTGATGA+TGG | + | chr4_1:26338912-26338931 | None:intergenic | 40.0% | |
| CATCATCAGTGATCAACAGA+AGG | - | chr4_1:26338910-26338929 | Msa0542240:intron | 40.0% | |
| GGAAGCAACAAATCAATAGC+TGG | + | chr4_1:26339046-26339065 | None:intergenic | 40.0% | |
| TGCTTGGGAAAAGGATATGA+AGG | - | chr4_1:26339180-26339199 | Msa0542240:CDS | 40.0% | |
| TAGATCCAAGACATTGGACT+AGG | - | chr4_1:26339248-26339267 | Msa0542240:CDS | 40.0% | |
| ATTGACCTAGTCCAATGTCT+TGG | + | chr4_1:26339256-26339275 | None:intergenic | 40.0% | |
| ACTCTGTCATTGTGATTCCA+AGG | - | chr4_1:26339332-26339351 | Msa0542240:CDS | 40.0% | |
| GATTTATGTCATGCAGAGGT+GGG | - | chr4_1:26339390-26339409 | Msa0542240:CDS | 40.0% | |
| !! | GCATTAAGTTTCTGGTTTCC+TGG | - | chr4_1:26339644-26339663 | Msa0542240:intron | 40.0% |
| GCTTCTTTCTTGTAGATGGA+TGG | + | chr4_1:26339865-26339884 | None:intergenic | 40.0% | |
| AGCATGATATATCCTGCCAA+TGG | - | chr4_1:26339904-26339923 | Msa0542240:intron | 40.0% | |
| ! | CATCCACAGATTTTGTCCAT+TGG | + | chr4_1:26339923-26339942 | None:intergenic | 40.0% |
| ATGGACAAAATCTGTGGATG+AGG | - | chr4_1:26339923-26339942 | Msa0542240:intron | 40.0% | |
| !!! | GGTTGTTTTTTGATAGCTGG+TGG | + | chr4_1:26339970-26339989 | None:intergenic | 40.0% |
| !!! | CCAGGTTGTTTTTTGATAGC+TGG | + | chr4_1:26339973-26339992 | None:intergenic | 40.0% |
| CCAGCTATCAAAAAACAACC+TGG | - | chr4_1:26339970-26339989 | Msa0542240:intron | 40.0% | |
| !!! | CTTTTCTTTTTAGGTCTCCC+AGG | + | chr4_1:26339991-26340010 | None:intergenic | 40.0% |
| TGAGTTTGAGTCTCTGATTC+AGG | + | chr4_1:26340150-26340169 | None:intergenic | 40.0% | |
| AATCAAGCTTCTCAGGTTCA+GGG | - | chr4_1:26340261-26340280 | Msa0542240:intron | 40.0% | |
| AGCATCAACTAGGAAGAGAA+AGG | - | chr4_1:26340374-26340393 | Msa0542240:intron | 40.0% | |
| !!! | CTTTTGAGTTGGTGGAATCT+GGG | + | chr4_1:26340430-26340449 | None:intergenic | 40.0% |
| !!! | GCATTTTGCTTTTGAGTTGG+TGG | + | chr4_1:26340438-26340457 | None:intergenic | 40.0% |
| !! | GGAGCATTTTGCTTTTGAGT+TGG | + | chr4_1:26340441-26340460 | None:intergenic | 40.0% |
| CTAGCCCTTATCTTCTTAGT+TGG | + | chr4_1:26340462-26340481 | None:intergenic | 40.0% | |
| GTAGGACACACTCAAACACT+TGG | + | chr4_1:26336780-26336799 | None:intergenic | 45.0% | |
| AGTGTGTCCTACATCATGCT+GGG | - | chr4_1:26336788-26336807 | Msa0542240:CDS | 45.0% | |
| TTAAGTCCCCAGCATGATGT+AGG | + | chr4_1:26336798-26336817 | None:intergenic | 45.0% | |
| CTTCTGGACCTACATACTCA+GGG | + | chr4_1:26336834-26336853 | None:intergenic | 45.0% | |
| TCTTCTGGACCTACATACTC+AGG | + | chr4_1:26336835-26336854 | None:intergenic | 45.0% | |
| TCCTGCTATGGAAGATGGAA+TGG | - | chr4_1:26336954-26336973 | Msa0542240:intron | 45.0% | |
| ACCATTCCATCTTCCATAGC+AGG | + | chr4_1:26336958-26336977 | None:intergenic | 45.0% | |
| TGGGGTGAACAGCATACAAA+TGG | + | chr4_1:26337044-26337063 | None:intergenic | 45.0% | |
| TCATTCCTAACAGGTGGGAT+AGG | + | chr4_1:26337126-26337145 | None:intergenic | 45.0% | |
| !! | AATGCTGATGGTGGTGTAAC+TGG | - | chr4_1:26337198-26337217 | Msa0542240:intron | 45.0% |
| GCATGTGTACACTCAACAGT+GGG | + | chr4_1:26337231-26337250 | None:intergenic | 45.0% | |
| AGCATGTGTACACTCAACAG+TGG | + | chr4_1:26337232-26337251 | None:intergenic | 45.0% | |
| GTTGAGTGTACACATGCTGA+TGG | - | chr4_1:26337234-26337253 | Msa0542240:intron | 45.0% | |
| TGGTCATTTAAGTCCACCTC+AGG | + | chr4_1:26337261-26337280 | None:intergenic | 45.0% | |
| ! | GAGGTGGACTTAAATGACCA+TGG | - | chr4_1:26337261-26337280 | Msa0542240:intron | 45.0% |
| TCTCATCAATCATTGGGCCA+TGG | + | chr4_1:26337281-26337300 | None:intergenic | 45.0% | |
| GTCTCATCATCTCCTAATCC+AGG | + | chr4_1:26337333-26337352 | None:intergenic | 45.0% | |
| GATGAGACACAGACTGAAGT+TGG | - | chr4_1:26337345-26337364 | Msa0542240:CDS | 45.0% | |
| ! | ACAGTTTCCTTCTCTAGCTC+AGG | + | chr4_1:26337387-26337406 | None:intergenic | 45.0% |
| GGAAACTGTGAATGTGAGTG+AGG | - | chr4_1:26337398-26337417 | Msa0542240:CDS | 45.0% | |
| AGAAACTGTGAATGTGGGTG+AGG | - | chr4_1:26337431-26337450 | Msa0542240:CDS | 45.0% | |
| ACATTCACAGTTTCCTCCAC+TGG | + | chr4_1:26337459-26337478 | None:intergenic | 45.0% | |
| AGTGGAGGAAACTGTGAATG+TGG | - | chr4_1:26337458-26337477 | Msa0542240:CDS | 45.0% | |
| GTGGAGGAAACTGTGAATGT+GGG | - | chr4_1:26337459-26337478 | Msa0542240:CDS | 45.0% | |
| ! | TCATTTTCATTCCCTAGCCC+AGG | + | chr4_1:26337489-26337508 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGTCAGAAGCAG+AGG | - | chr4_1:26337587-26337606 | Msa0542240:CDS | 45.0% |
| !! | AGGTGGAATTGGAGTTGATG+TGG | - | chr4_1:26337641-26337660 | Msa0542240:CDS | 45.0% |
| TGTTGAGACAGAGACTGAAG+TGG | - | chr4_1:26337671-26337690 | Msa0542240:CDS | 45.0% | |
| GTTGAGACAGAGACTGAAGT+GGG | - | chr4_1:26337672-26337691 | Msa0542240:CDS | 45.0% | |
| GAAGAAGAGTGAAACTGGGA+AGG | - | chr4_1:26337809-26337828 | Msa0542240:intron | 45.0% | |
| AGAAGAGTGAAACTGGGAAG+GGG | - | chr4_1:26337811-26337830 | Msa0542240:intron | 45.0% | |
| AAACTGGGAAGGGGAAAAAG+AGG | - | chr4_1:26337820-26337839 | Msa0542240:intron | 45.0% | |
| AGAGACTGCAGTAGCTGATA+GGG | - | chr4_1:26337950-26337969 | Msa0542240:intron | 45.0% | |
| ! | TAGTGGATCTGAGAGTGATG+AGG | - | chr4_1:26338013-26338032 | Msa0542240:intron | 45.0% |
| CTTATGGAGTACACTCTGGA+AGG | - | chr4_1:26338153-26338172 | Msa0542240:intron | 45.0% | |
| ATGCAAGGAAGGATGTCCAT+GGG | - | chr4_1:26338220-26338239 | Msa0542240:intron | 45.0% | |
| AGAGACATGGCAGTTGAGAA+AGG | - | chr4_1:26338271-26338290 | Msa0542240:intron | 45.0% | |
| CAGTTGAGAAAGGTTTACCC+TGG | - | chr4_1:26338281-26338300 | Msa0542240:intron | 45.0% | |
| TGTCACACTCATGATCTCCA+GGG | + | chr4_1:26338301-26338320 | None:intergenic | 45.0% | |
| ATGTCACACTCATGATCTCC+AGG | + | chr4_1:26338302-26338321 | None:intergenic | 45.0% | |
| !! | AACCCCATATGAAGGTACTG+AGG | - | chr4_1:26338592-26338611 | Msa0542240:intron | 45.0% |
| AGCCTCAGTACCTTCATATG+GGG | + | chr4_1:26338597-26338616 | None:intergenic | 45.0% | |
| CAGCCTCAGTACCTTCATAT+GGG | + | chr4_1:26338598-26338617 | None:intergenic | 45.0% | |
| TCAGCCTCAGTACCTTCATA+TGG | + | chr4_1:26338599-26338618 | None:intergenic | 45.0% | |
| ! | GCTTGATGGTTGCTTCCTTA+AGG | - | chr4_1:26338721-26338740 | Msa0542240:intron | 45.0% |
| GCTAGCAACATTCCACCATA+AGG | + | chr4_1:26338749-26338768 | None:intergenic | 45.0% | |
| CATCATGGAAACAACTGGCT+TGG | + | chr4_1:26339359-26339378 | None:intergenic | 45.0% | |
| ! | CAAGCCAGTTGTTTCCATGA+TGG | - | chr4_1:26339357-26339376 | Msa0542240:CDS | 45.0% |
| TCCTCCATCATGGAAACAAC+TGG | + | chr4_1:26339364-26339383 | None:intergenic | 45.0% | |
| GGATTTATGTCATGCAGAGG+TGG | - | chr4_1:26339389-26339408 | Msa0542240:CDS | 45.0% | |
| !! | GTTTCTGGTTTCCTGGTTTC+TGG | - | chr4_1:26339651-26339670 | Msa0542240:intron | 45.0% |
| !! | TGCTGTTAACTTGCAGCAGA+TGG | - | chr4_1:26339744-26339763 | Msa0542240:intron | 45.0% |
| TGCAGGAAATGGTACTTGAC+AGG | - | chr4_1:26339775-26339794 | Msa0542240:intron | 45.0% | |
| GCAGGAAATGGTACTTGACA+GGG | - | chr4_1:26339776-26339795 | Msa0542240:intron | 45.0% | |
| ! | CACAGATTTTGTCCATTGGC+AGG | + | chr4_1:26339919-26339938 | None:intergenic | 45.0% |
| CTGCCAATGGACAAAATCTG+TGG | - | chr4_1:26339917-26339936 | Msa0542240:intron | 45.0% | |
| GATAGCTGGTGGTTGAAGAT+CGG | + | chr4_1:26339959-26339978 | None:intergenic | 45.0% | |
| AGTGAGCTTCTCAGAGATAG+TGG | - | chr4_1:26340024-26340043 | Msa0542240:intron | 45.0% | |
| GTTTGAGTCTCTGATTCAGG+AGG | + | chr4_1:26340147-26340166 | None:intergenic | 45.0% | |
| TGAGTCTCAACTTGTGCTTG+AGG | + | chr4_1:26340186-26340205 | None:intergenic | 45.0% | |
| ! | GTTTGAGTCTGAGATACCTG+TGG | + | chr4_1:26340219-26340238 | None:intergenic | 45.0% |
| TGCTCAGAATCAAGCTTCTC+AGG | - | chr4_1:26340254-26340273 | Msa0542240:intron | 45.0% | |
| GAATCAAGCTTCTCAGGTTC+AGG | - | chr4_1:26340260-26340279 | Msa0542240:intron | 45.0% | |
| TAATCAGAGCCAAGCTTCTC+AGG | - | chr4_1:26340299-26340318 | Msa0542240:intron | 45.0% | |
| GAAGTTTGTGACTGAGTAGC+TGG | + | chr4_1:26340408-26340427 | None:intergenic | 45.0% | |
| !!! | GCTTTTGAGTTGGTGGAATC+TGG | + | chr4_1:26340431-26340450 | None:intergenic | 45.0% |
| !!! | CCTGGCTTTGCAGATTGTTT+TGG | + | chr4_1:26340507-26340526 | None:intergenic | 45.0% |
| CCAAAACAATCTGCAAAGCC+AGG | - | chr4_1:26340504-26340523 | Msa0542240:CDS | 45.0% | |
| TTCTTTCTCCTCTTGTCTCC+TGG | + | chr4_1:26340525-26340544 | None:intergenic | 45.0% | |
| AGGAGACAAGAGGAGAAAGA+AGG | - | chr4_1:26340524-26340543 | Msa0542240:CDS | 45.0% | |
| GGAGACAAGAGGAGAAAGAA+GGG | - | chr4_1:26340525-26340544 | Msa0542240:CDS | 45.0% | |
| AGAGAAAACGCTGCTGCATC+TGG | - | chr4_1:26336283-26336302 | Msa0542240:CDS | 50.0% | |
| CTGTTGTGTTGTGCTGTCTG+TGG | - | chr4_1:26336673-26336692 | Msa0542240:CDS | 50.0% | |
| GAGTGTGTCCTACATCATGC+TGG | - | chr4_1:26336787-26336806 | Msa0542240:CDS | 50.0% | |
| GTGTGTCCTACATCATGCTG+GGG | - | chr4_1:26336789-26336808 | Msa0542240:CDS | 50.0% | |
| TCCTAACAGGTGGGATAGGT+GGG | + | chr4_1:26337122-26337141 | None:intergenic | 50.0% | |
| TTCCTAACAGGTGGGATAGG+TGG | + | chr4_1:26337123-26337142 | None:intergenic | 50.0% | |
| GGTGAGGGTTCAAATGCTGA+TGG | - | chr4_1:26337186-26337205 | Msa0542240:intron | 50.0% | |
| GAGGGTTCAAATGCTGATGG+TGG | - | chr4_1:26337189-26337208 | Msa0542240:intron | 50.0% | |
| ! | GATGGTGGTGTAACTGGTGT+AGG | - | chr4_1:26337204-26337223 | Msa0542240:intron | 50.0% |
| !! | GGTGAGTATGATAATGGGCC+TGG | - | chr4_1:26337312-26337331 | Msa0542240:CDS | 50.0% |
| GAGAAGGAAGACAGTGCCTT+TGG | - | chr4_1:26337558-26337577 | Msa0542240:CDS | 50.0% | |
| AGCAGGAGACTTAGACAGTG+AGG | - | chr4_1:26337617-26337636 | Msa0542240:CDS | 50.0% | |
| GGAGACTTAGACAGTGAGGT+AGG | - | chr4_1:26337621-26337640 | Msa0542240:CDS | 50.0% | |
| GACTTAGACAGTGAGGTAGG+TGG | - | chr4_1:26337624-26337643 | Msa0542240:CDS | 50.0% | |
| GACAGTGAGGTAGGTGGAAT+TGG | - | chr4_1:26337630-26337649 | Msa0542240:CDS | 50.0% | |
| AAGTGGGTGAAGGATCTGTG+AGG | - | chr4_1:26337724-26337743 | Msa0542240:CDS | 50.0% | |
| AGTGGGTGAAGGATCTGTGA+GGG | - | chr4_1:26337725-26337744 | Msa0542240:CDS | 50.0% | |
| TGAAGGATCTGTGAGGGTAG+AGG | - | chr4_1:26337731-26337750 | Msa0542240:CDS | 50.0% | |
| GAAGGATCTGTGAGGGTAGA+GGG | - | chr4_1:26337732-26337751 | Msa0542240:CDS | 50.0% | |
| AAGGGGAAAAGGAAGAAGGG+AGG | - | chr4_1:26337774-26337793 | Msa0542240:intron | 50.0% | |
| GGGAAGGGGAAAAAGAGGAA+AGG | - | chr4_1:26337825-26337844 | Msa0542240:intron | 50.0% | |
| CAGAGACTGCAGTAGCTGAT+AGG | - | chr4_1:26337949-26337968 | Msa0542240:intron | 50.0% | |
| GAGACTGCAGTAGCTGATAG+GGG | - | chr4_1:26337951-26337970 | Msa0542240:intron | 50.0% | |
| GGATCTGAGAGTGATGAGGA+TGG | - | chr4_1:26338017-26338036 | Msa0542240:intron | 50.0% | |
| AAGAGTGAGGGTTGGATGCA+AGG | - | chr4_1:26338205-26338224 | Msa0542240:intron | 50.0% | |
| GATGCAAGGAAGGATGTCCA+TGG | - | chr4_1:26338219-26338238 | Msa0542240:intron | 50.0% | |
| TTAGCACAGAATGCCTCCCA+TGG | + | chr4_1:26338239-26338258 | None:intergenic | 50.0% | |
| AACTGCCATGTCTCTTCACC+AGG | + | chr4_1:26338266-26338285 | None:intergenic | 50.0% | |
| TGCTTCCTTAAGGGGCCTTA+TGG | - | chr4_1:26338731-26338750 | Msa0542240:intron | 50.0% | |
| ! | TTCCTTAAGGGGCCTTATGG+TGG | - | chr4_1:26338734-26338753 | Msa0542240:intron | 50.0% |
| TTCCACCATAAGGCCCCTTA+AGG | + | chr4_1:26338739-26338758 | None:intergenic | 50.0% | |
| GGAATGTTGCTAGCTGCCAT+TGG | - | chr4_1:26338755-26338774 | Msa0542240:intron | 50.0% | |
| GTTGCTAGCTGCCATTGGAA+TGG | - | chr4_1:26338760-26338779 | Msa0542240:intron | 50.0% | |
| CAAAACCTCTGCTCAACCTC+AGG | + | chr4_1:26339067-26339086 | None:intergenic | 50.0% | |
| !! | GAAACAACTGGCTTGGACCT+TGG | + | chr4_1:26339352-26339371 | None:intergenic | 50.0% |
| ! | GCCAGTTGTTTCCATGATGG+AGG | - | chr4_1:26339360-26339379 | Msa0542240:CDS | 50.0% |
| TGCAGAGGTGGGAGAAGAAT+AGG | - | chr4_1:26339401-26339420 | Msa0542240:CDS | 50.0% | |
| TGGTGTGTGACTGCAGGAAA+TGG | - | chr4_1:26339764-26339783 | Msa0542240:intron | 50.0% | |
| CAAGCAATGGCATGACAGCA+TGG | + | chr4_1:26339805-26339824 | None:intergenic | 50.0% | |
| TGCAGTAGGTGCAAGCAATG+TGG | - | chr4_1:26340078-26340097 | Msa0542240:intron | 50.0% | |
| TGAGTCTCTGATTCAGGAGG+TGG | + | chr4_1:26340144-26340163 | None:intergenic | 50.0% | |
| ACTTGTGCTTGAGGCTGAGA+TGG | + | chr4_1:26340177-26340196 | None:intergenic | 50.0% | |
| AGCCAAGCTTCTCAGGTTCA+GGG | - | chr4_1:26340306-26340325 | Msa0542240:intron | 50.0% | |
| TACCCTGAACCTGAGAAGCT+TGG | + | chr4_1:26340266-26340285 | None:intergenic | 50.0% | |
| GACAAGAGGAGAAAGAAGGG+AGG | - | chr4_1:26340528-26340547 | Msa0542240:CDS | 50.0% | |
| GGGATAGGTGGGGCCATTAT+AGG | + | chr4_1:26337111-26337130 | None:intergenic | 55.0% | |
| CCTAACAGGTGGGATAGGTG+GGG | + | chr4_1:26337121-26337140 | None:intergenic | 55.0% | |
| GCAGTGGGACCTACACTAGT+GGG | + | chr4_1:26337162-26337181 | None:intergenic | 55.0% | |
| AGCAGTGGGACCTACACTAG+TGG | + | chr4_1:26337163-26337182 | None:intergenic | 55.0% | |
| TAGTGTAGGTCCCACTGCTG+AGG | - | chr4_1:26337164-26337183 | Msa0542240:intron | 55.0% | |
| AGTGTAGGTCCCACTGCTGA+GGG | - | chr4_1:26337165-26337184 | Msa0542240:intron | 55.0% | |
| ! | TACACATGCTGATGGGCCTG+AGG | - | chr4_1:26337242-26337261 | Msa0542240:intron | 55.0% |
| TCATGGGCCTGAGCTAGAGA+AGG | - | chr4_1:26337377-26337396 | Msa0542240:CDS | 55.0% | |
| ! | GAATGTGAGTGAGGCACCAG+TGG | - | chr4_1:26337407-26337426 | Msa0542240:CDS | 55.0% |
| ACTGTGAATGTGGGTGAGCC+TGG | - | chr4_1:26337468-26337487 | Msa0542240:CDS | 55.0% | |
| CTGTGAATGTGGGTGAGCCT+GGG | - | chr4_1:26337469-26337488 | Msa0542240:CDS | 55.0% | |
| TGAGGATCTGGCTGGTGAGA+AGG | - | chr4_1:26337542-26337561 | Msa0542240:CDS | 55.0% | |
| TGGTGAGTCAGAAGCAGAGG+TGG | - | chr4_1:26337590-26337609 | Msa0542240:CDS | 55.0% | |
| GGTGAGTCAGAAGCAGAGGT+GGG | - | chr4_1:26337591-26337610 | Msa0542240:CDS | 55.0% | |
| GAAGCAGAGGTGGGAATAGC+AGG | - | chr4_1:26337600-26337619 | Msa0542240:CDS | 55.0% | |
| GTGAGGGTTGGATGCAAGGA+AGG | - | chr4_1:26338209-26338228 | Msa0542240:intron | 55.0% | |
| CAAGGAAGGATGTCCATGGG+AGG | - | chr4_1:26338223-26338242 | Msa0542240:intron | 55.0% | |
| TGGAGAGGGTTCAGGAGAAG+TGG | - | chr4_1:26338417-26338436 | Msa0542240:intron | 55.0% | |
| TGCTTCCTGAGGTTGAGCAG+AGG | - | chr4_1:26339059-26339078 | Msa0542240:intron | 55.0% | |
| AGCAGATGGTGTGTGACTGC+AGG | - | chr4_1:26339758-26339777 | Msa0542240:intron | 55.0% | |
| TCTGATTCAGGAGGTGGAGG+TGG | + | chr4_1:26340138-26340157 | None:intergenic | 55.0% | |
| GTCTCTGATTCAGGAGGTGG+AGG | + | chr4_1:26340141-26340160 | None:intergenic | 55.0% | |
| GACTCAAACCAGTCAGCCAC+AGG | - | chr4_1:26340200-26340219 | Msa0542240:intron | 55.0% | |
| CTGAGATACCTGTGGCTGAC+TGG | + | chr4_1:26340211-26340230 | None:intergenic | 55.0% | |
| GAGCCAAGCTTCTCAGGTTC+AGG | - | chr4_1:26340305-26340324 | Msa0542240:intron | 55.0% | |
| CTGCAAAGCCAGGAGACAAG+AGG | - | chr4_1:26340514-26340533 | Msa0542240:CDS | 55.0% | |
| CCCCACCTATCCCACCTGTT+AGG | - | chr4_1:26337118-26337137 | Msa0542240:intron | 60.0% | |
| GAACCCTCACCCTCAGCAGT+GGG | + | chr4_1:26337177-26337196 | None:intergenic | 60.0% | |
| TGAACCCTCACCCTCAGCAG+TGG | + | chr4_1:26337178-26337197 | None:intergenic | 60.0% | |
| ! | ACATGCTGATGGGCCTGAGG+TGG | - | chr4_1:26337245-26337264 | Msa0542240:intron | 60.0% |
| ! | GAATGTGGGTGAGGCACCAG+TGG | - | chr4_1:26337440-26337459 | Msa0542240:CDS | 60.0% |
| AATGTGGGTGAGCCTGGGCT+AGG | - | chr4_1:26337474-26337493 | Msa0542240:CDS | 60.0% | |
| ATGTGGGTGAGCCTGGGCTA+GGG | - | chr4_1:26337475-26337494 | Msa0542240:CDS | 60.0% | |
| GATTCAGGAGGTGGAGGTGG+AGG | + | chr4_1:26340135-26340154 | None:intergenic | 60.0% | |
| AGGTCCCACTGCTGAGGGTG+AGG | - | chr4_1:26337170-26337189 | Msa0542240:intron | 65.0% | |
| GGTCCCACTGCTGAGGGTGA+GGG | - | chr4_1:26337171-26337190 | Msa0542240:intron | 65.0% | |
| ! | TGTGGGTGAGGCACCAGTGG+AGG | - | chr4_1:26337443-26337462 | Msa0542240:CDS | 65.0% |
| ! | GAGGTGGAGGTGCAGGCAGT+GGG | + | chr4_1:26340122-26340141 | None:intergenic | 65.0% |
| ! | GGAGGTGGAGGTGCAGGCAG+TGG | + | chr4_1:26340123-26340142 | None:intergenic | 70.0% |
| ! | GGAGGTGGAGGTGGAGGTGC+AGG | + | chr4_1:26340129-26340148 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26336251 | 26340572 | 26336251 | ID=Msa0542240;Name=Msa0542240 |
| chr4_1 | mRNA | 26336251 | 26340572 | 26336251 | ID=Msa0542240-mRNA-1;Parent=Msa0542240;Name=Msa0542240-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|1|1|4|0|586 |
| chr4_1 | exon | 26340500 | 26340572 | 26340500 | ID=Msa0542240-mRNA-1:exon:7260;Parent=Msa0542240-mRNA-1 |
| chr4_1 | exon | 26339077 | 26339651 | 26339077 | ID=Msa0542240-mRNA-1:exon:7259;Parent=Msa0542240-mRNA-1 |
| chr4_1 | exon | 26337305 | 26337789 | 26337305 | ID=Msa0542240-mRNA-1:exon:7258;Parent=Msa0542240-mRNA-1 |
| chr4_1 | exon | 26336251 | 26336878 | 26336251 | ID=Msa0542240-mRNA-1:exon:7257;Parent=Msa0542240-mRNA-1 |
| chr4_1 | CDS | 26340500 | 26340572 | 26340500 | ID=Msa0542240-mRNA-1:cds;Parent=Msa0542240-mRNA-1 |
| chr4_1 | CDS | 26339077 | 26339651 | 26339077 | ID=Msa0542240-mRNA-1:cds;Parent=Msa0542240-mRNA-1 |
| chr4_1 | CDS | 26337305 | 26337789 | 26337305 | ID=Msa0542240-mRNA-1:cds;Parent=Msa0542240-mRNA-1 |
| chr4_1 | CDS | 26336251 | 26336878 | 26336251 | ID=Msa0542240-mRNA-1:cds;Parent=Msa0542240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
